Query 005288
Match_columns 704
No_of_seqs 396 out of 2485
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 21:05:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10660 tilS tRNA(Ile)-lysidi 100.0 1.7E-44 3.6E-49 399.4 30.7 288 79-402 12-304 (436)
2 PF01171 ATP_bind_3: PP-loop f 100.0 1.5E-45 3.3E-50 362.0 19.5 182 84-291 1-182 (182)
3 COG0037 MesJ tRNA(Ile)-lysidin 100.0 1.7E-38 3.7E-43 331.8 26.8 231 64-320 4-238 (298)
4 PRK10696 tRNA 2-thiocytidine b 100.0 7.8E-37 1.7E-41 316.7 25.8 219 64-308 10-236 (258)
5 TIGR02432 lysidine_TilS_N tRNA 100.0 2.9E-37 6.4E-42 303.2 21.1 188 84-294 1-189 (189)
6 cd01992 PP-ATPase N-terminal d 100.0 2.2E-34 4.9E-39 280.8 21.6 185 84-294 1-185 (185)
7 cd01993 Alpha_ANH_like_II This 100.0 3.2E-32 7E-37 264.5 17.5 177 84-281 1-183 (185)
8 PRK00074 guaA GMP synthase; Re 100.0 3.2E-30 6.9E-35 290.8 14.6 216 23-280 142-392 (511)
9 PLN02347 GMP synthetase 99.9 1.4E-25 3.1E-30 253.9 15.8 213 24-271 156-404 (536)
10 COG0519 GuaA GMP synthase, PP- 99.9 3.3E-25 7.2E-30 228.3 10.9 179 54-272 1-185 (315)
11 PRK00143 mnmA tRNA-specific 2- 99.9 1.8E-24 3.9E-29 233.7 15.0 170 83-286 1-196 (346)
12 cd01990 Alpha_ANH_like_I This 99.9 1E-23 2.2E-28 209.9 12.3 152 85-281 1-157 (202)
13 cd01997 GMP_synthase_C The C-t 99.9 1.1E-23 2.3E-28 223.1 13.1 165 84-278 1-175 (295)
14 TIGR00884 guaA_Cterm GMP synth 99.9 8.3E-23 1.8E-27 217.9 17.3 171 63-276 3-188 (311)
15 cd01998 tRNA_Me_trans tRNA met 99.9 1.2E-22 2.7E-27 219.6 14.1 170 84-284 1-195 (349)
16 PRK00919 GMP synthase subunit 99.9 2.3E-22 5.1E-27 213.9 15.1 155 83-274 22-181 (307)
17 PRK14665 mnmA tRNA-specific 2- 99.9 3.7E-21 8.1E-26 208.9 15.3 181 78-284 1-195 (360)
18 TIGR00268 conserved hypothetic 99.9 4.4E-21 9.5E-26 198.7 14.2 153 82-280 12-168 (252)
19 PRK08349 hypothetical protein; 99.9 1.5E-20 3.1E-25 187.9 17.3 149 84-273 2-161 (198)
20 cd01712 ThiI ThiI is required 99.9 1.8E-20 4E-25 183.3 17.0 152 84-275 1-161 (177)
21 KOG1622 GMP synthase [Nucleoti 99.8 1.4E-20 3.1E-25 203.4 8.6 207 33-274 175-408 (552)
22 cd01713 PAPS_reductase This do 99.8 1.3E-19 2.8E-24 171.6 13.8 152 84-273 1-162 (173)
23 TIGR00420 trmU tRNA (5-methyla 99.8 2.1E-19 4.6E-24 194.8 13.1 171 83-284 1-198 (352)
24 PRK14561 hypothetical protein; 99.8 1.1E-18 2.5E-23 174.5 12.9 151 84-281 2-158 (194)
25 PRK14664 tRNA-specific 2-thiou 99.8 1.3E-18 2.8E-23 189.1 10.3 175 79-284 2-190 (362)
26 PRK13820 argininosuccinate syn 99.8 8.3E-18 1.8E-22 184.4 16.5 146 82-276 2-167 (394)
27 TIGR00342 thiazole biosynthesi 99.8 9.7E-18 2.1E-22 183.0 15.6 161 79-280 169-339 (371)
28 TIGR00364 exsB protein. This p 99.7 5.1E-17 1.1E-21 162.4 13.3 155 85-280 1-184 (201)
29 PRK08384 thiamine biosynthesis 99.7 1.3E-16 2.9E-21 174.5 17.0 153 80-277 178-345 (381)
30 cd01995 ExsB ExsB is a transcr 99.7 1.3E-16 2.9E-21 154.6 14.3 143 84-281 1-149 (169)
31 cd01986 Alpha_ANH_like Adenine 99.7 2.1E-16 4.5E-21 142.0 11.8 83 85-213 1-83 (103)
32 TIGR00552 nadE NAD+ synthetase 99.7 4.6E-16 9.9E-21 161.1 15.9 168 64-280 7-187 (250)
33 COG1606 ATP-utilizing enzymes 99.7 6.2E-16 1.3E-20 158.9 15.6 163 68-280 8-174 (269)
34 PRK01565 thiamine biosynthesis 99.7 2.1E-16 4.5E-21 173.9 11.9 161 79-280 173-343 (394)
35 PRK05253 sulfate adenylyltrans 99.7 4.2E-15 9.2E-20 158.3 19.3 175 83-277 28-210 (301)
36 TIGR00032 argG argininosuccina 99.6 2.4E-15 5.3E-20 165.3 15.2 148 84-277 1-167 (394)
37 PF03054 tRNA_Me_trans: tRNA m 99.6 2.5E-16 5.5E-21 170.8 7.2 176 83-284 1-199 (356)
38 PRK11106 queuosine biosynthesi 99.6 5.3E-15 1.1E-19 152.2 14.0 153 83-272 2-180 (231)
39 PRK00509 argininosuccinate syn 99.6 1.3E-14 2.8E-19 159.6 15.6 148 83-276 3-170 (399)
40 PRK01269 tRNA s(4)U8 sulfurtra 99.6 1.8E-14 3.9E-19 162.4 14.8 160 80-279 175-342 (482)
41 COG0482 TrmU Predicted tRNA(5- 99.5 3.2E-14 7E-19 153.4 11.9 176 82-283 3-196 (356)
42 KOG2840 Uncharacterized conser 99.5 1.5E-14 3.3E-19 152.6 8.9 210 74-305 43-265 (347)
43 PF06508 QueC: Queuosine biosy 99.5 3.5E-14 7.6E-19 144.1 10.2 161 84-277 1-182 (209)
44 cd00553 NAD_synthase NAD+ synt 99.5 2E-13 4.4E-18 141.2 13.6 160 64-272 8-179 (248)
45 PLN00200 argininosuccinate syn 99.5 1.8E-13 3.8E-18 150.9 13.8 150 83-277 6-175 (404)
46 TIGR02039 CysD sulfate adenyly 99.5 1.2E-12 2.5E-17 139.2 18.9 173 84-273 21-198 (294)
47 PRK13980 NAD synthetase; Provi 99.5 1.1E-12 2.4E-17 137.3 18.2 166 66-280 17-191 (265)
48 cd01999 Argininosuccinate_Synt 99.5 3.9E-13 8.5E-18 147.6 14.8 146 85-275 1-166 (385)
49 PRK08576 hypothetical protein; 99.5 8.3E-13 1.8E-17 146.9 15.5 151 83-273 235-388 (438)
50 PRK04527 argininosuccinate syn 99.4 2.7E-13 5.7E-18 149.1 10.2 149 82-277 2-173 (400)
51 cd01996 Alpha_ANH_like_III Thi 99.4 3.5E-13 7.6E-18 128.5 9.4 106 84-205 3-116 (154)
52 COG0603 Predicted PP-loop supe 99.4 4.1E-12 9E-17 129.5 12.2 159 83-274 3-182 (222)
53 PRK02090 phosphoadenosine phos 99.4 1.8E-11 3.9E-16 126.5 16.8 145 83-273 41-195 (241)
54 PF02568 ThiI: Thiamine biosyn 99.3 7.3E-12 1.6E-16 126.3 11.7 149 82-270 3-161 (197)
55 TIGR03573 WbuX N-acetyl sugar 99.3 8.9E-12 1.9E-16 135.1 12.1 142 47-203 22-172 (343)
56 PTZ00323 NAD+ synthase; Provis 99.3 2.3E-11 5E-16 129.5 14.5 187 50-281 19-223 (294)
57 KOG2805 tRNA (5-methylaminomet 99.3 1.8E-11 4E-16 128.8 10.2 177 81-283 4-204 (377)
58 PRK12563 sulfate adenylyltrans 99.3 1.7E-10 3.6E-15 123.5 17.7 174 83-273 38-216 (312)
59 PF02540 NAD_synthase: NAD syn 99.2 3.1E-10 6.7E-15 117.8 13.5 159 64-271 3-169 (242)
60 cd01984 AANH_like Adenine nucl 99.1 1.4E-10 2.9E-15 100.4 7.7 69 85-212 1-69 (86)
61 PF01507 PAPS_reduct: Phosphoa 99.1 2.4E-10 5.2E-15 109.9 9.1 148 84-272 1-155 (174)
62 cd01994 Alpha_ANH_like_IV This 99.0 4.6E-09 1E-13 105.7 15.7 143 84-279 1-147 (194)
63 TIGR00434 cysH phosophoadenyly 98.9 1.4E-08 3.1E-13 102.7 14.1 148 83-272 14-169 (212)
64 KOG2594 Uncharacterized conser 98.9 1.5E-08 3.2E-13 108.7 14.0 196 61-272 34-265 (396)
65 PRK13794 hypothetical protein; 98.9 2.5E-08 5.3E-13 113.0 16.2 150 82-272 247-404 (479)
66 TIGR03679 arCOG00187 arCOG0018 98.9 3.6E-08 7.9E-13 100.8 14.6 140 86-279 1-145 (218)
67 PRK08557 hypothetical protein; 98.9 6.1E-08 1.3E-12 108.0 17.4 149 82-272 181-338 (417)
68 PRK13795 hypothetical protein; 98.8 4.7E-08 1E-12 114.2 15.9 150 82-272 243-400 (636)
69 PRK02628 nadE NAD synthetase; 98.8 4.3E-08 9.2E-13 115.4 15.4 148 81-269 360-522 (679)
70 TIGR02057 PAPS_reductase phosp 98.8 8.8E-08 1.9E-12 98.6 15.7 150 82-272 25-184 (226)
71 PRK05370 argininosuccinate syn 98.8 6.5E-08 1.4E-12 107.5 14.0 152 79-275 8-186 (447)
72 PRK00876 nadE NAD synthetase; 98.8 2.2E-07 4.7E-12 100.6 16.9 82 64-161 17-98 (326)
73 COG0301 ThiI Thiamine biosynth 98.7 9.8E-08 2.1E-12 104.8 13.9 150 80-270 173-332 (383)
74 COG0137 ArgG Argininosuccinate 98.6 3E-07 6.5E-12 100.2 13.7 149 82-275 4-171 (403)
75 cd01991 Asn_Synthase_B_C The C 98.6 5.4E-08 1.2E-12 100.4 7.5 111 80-205 13-130 (269)
76 COG0175 CysH 3'-phosphoadenosi 98.6 2.7E-07 5.9E-12 97.0 12.4 162 83-292 40-209 (261)
77 PF00764 Arginosuc_synth: Argi 98.6 2.3E-07 5E-12 102.3 12.3 145 86-275 1-164 (388)
78 PRK13981 NAD synthetase; Provi 98.6 6.6E-07 1.4E-11 102.6 15.0 161 63-269 260-433 (540)
79 PF00733 Asn_synthase: Asparag 98.5 7.1E-07 1.5E-11 90.2 10.5 125 65-205 1-134 (255)
80 COG2117 Predicted subunit of t 98.5 1.9E-07 4.2E-12 91.0 6.0 159 84-293 2-173 (198)
81 PRK06850 hypothetical protein; 98.5 7.6E-06 1.6E-10 93.2 18.8 169 81-274 33-225 (507)
82 TIGR03183 DNA_S_dndC putative 98.4 1.1E-05 2.4E-10 90.7 17.8 169 82-273 13-205 (447)
83 PRK00768 nadE NAD synthetase; 98.3 5.8E-06 1.3E-10 87.4 13.4 170 68-280 27-211 (268)
84 TIGR01536 asn_synth_AEB aspara 98.3 2.1E-06 4.4E-11 96.8 9.8 130 62-204 230-369 (467)
85 COG0171 NadE NAD synthase [Coe 98.2 2.1E-05 4.6E-10 83.2 13.5 162 65-271 11-185 (268)
86 COG1365 Predicted ATPase (PP-l 98.1 5.4E-06 1.2E-10 84.3 7.4 139 83-272 61-204 (255)
87 TIGR00289 conserved hypothetic 98.0 0.00018 3.8E-09 74.4 15.7 138 84-279 2-143 (222)
88 TIGR02055 APS_reductase thiore 97.9 0.00011 2.3E-09 73.9 12.8 137 92-272 2-148 (191)
89 PLN02549 asparagine synthase ( 97.6 0.00023 5E-09 82.9 9.2 131 63-205 207-349 (578)
90 TIGR00424 APS_reduc 5'-adenyly 97.5 0.0019 4E-08 73.5 15.5 153 82-272 115-279 (463)
91 TIGR00290 MJ0570_dom MJ0570-re 97.4 0.0051 1.1E-07 63.8 15.6 140 84-280 2-145 (223)
92 TIGR00269 conserved hypothetic 97.3 0.00062 1.4E-08 62.3 6.7 58 249-306 3-62 (104)
93 PTZ00077 asparagine synthetase 97.3 0.00078 1.7E-08 78.7 8.9 134 64-205 220-363 (586)
94 PLN02309 5'-adenylylsulfate re 97.3 0.0046 9.9E-08 70.3 14.7 153 82-272 110-274 (457)
95 TIGR03108 eps_aminotran_1 exos 97.2 0.0018 4E-08 75.9 11.6 124 62-205 235-371 (628)
96 PRK09431 asnB asparagine synth 97.2 0.0017 3.8E-08 75.3 11.1 137 64-205 210-355 (554)
97 TIGR03104 trio_amidotrans aspa 97.2 0.0033 7.1E-08 73.5 12.5 124 62-204 237-376 (589)
98 PLN02339 NAD+ synthase (glutam 97.0 0.0089 1.9E-07 71.4 14.8 78 81-160 347-448 (700)
99 PF01902 ATP_bind_4: ATP-bindi 97.0 0.005 1.1E-07 63.6 10.4 140 84-279 2-144 (218)
100 KOG1706 Argininosuccinate synt 96.9 0.0076 1.6E-07 64.7 11.4 152 81-279 4-179 (412)
101 COG0367 AsnB Asparagine syntha 96.7 0.0092 2E-07 69.3 11.3 120 63-205 212-346 (542)
102 COG2102 Predicted ATPases of P 96.4 0.084 1.8E-06 54.8 14.8 135 84-274 2-140 (223)
103 COG3969 Predicted phosphoadeno 96.0 0.013 2.7E-07 63.9 6.2 170 80-272 25-232 (407)
104 cd01987 USP_OKCHK USP domain i 95.1 0.33 7.2E-06 44.0 11.5 102 84-216 1-106 (124)
105 KOG0573 Asparagine synthase [A 93.1 0.32 6.9E-06 55.0 8.3 26 83-108 251-276 (520)
106 PF10288 DUF2392: Protein of u 92.5 0.46 9.9E-06 43.7 7.3 58 205-276 2-61 (107)
107 KOG0571 Asparagine synthase (g 92.5 1.6 3.4E-05 49.5 12.6 131 59-205 203-347 (543)
108 PRK10490 sensor protein KdpD; 92.0 1.3 2.8E-05 54.7 12.5 98 79-203 247-348 (895)
109 cd00293 USP_Like Usp: Universa 91.8 2.7 5.8E-05 36.9 11.2 95 84-204 1-106 (130)
110 cd01988 Na_H_Antiporter_C The 91.3 3 6.4E-05 37.6 11.2 96 84-204 1-107 (132)
111 COG2205 KdpD Osmosensitive K+ 90.9 5.2 0.00011 48.7 15.3 110 80-216 246-364 (890)
112 cd01989 STK_N The N-terminal d 89.4 3 6.5E-05 38.8 9.8 95 84-203 1-115 (146)
113 PF02677 DUF208: Uncharacteriz 86.6 11 0.00024 38.2 12.2 117 87-217 3-135 (176)
114 PRK15118 universal stress glob 84.9 10 0.00022 35.3 10.6 94 83-201 4-113 (144)
115 PRK09982 universal stress prot 84.5 14 0.00029 34.9 11.3 38 83-130 4-41 (142)
116 PRK10116 universal stress prot 84.1 19 0.00042 33.2 12.0 101 83-208 4-119 (142)
117 COG1636 Uncharacterized protei 80.0 20 0.00043 36.9 10.8 102 82-197 3-116 (204)
118 COG0788 PurU Formyltetrahydrof 78.1 32 0.00069 37.2 12.2 107 61-200 62-175 (287)
119 PRK13010 purU formyltetrahydro 74.5 37 0.00081 36.8 12.0 117 59-208 63-186 (289)
120 TIGR00655 PurU formyltetrahydr 73.3 46 0.00099 36.0 12.2 109 60-201 54-170 (280)
121 PRK13011 formyltetrahydrofolat 73.1 54 0.0012 35.5 12.8 117 59-208 59-182 (286)
122 PRK06027 purU formyltetrahydro 72.6 44 0.00095 36.1 11.9 109 59-200 59-174 (286)
123 PRK15005 universal stress prot 69.9 27 0.00059 32.2 8.5 21 182-202 98-118 (144)
124 PF00582 Usp: Universal stress 69.4 51 0.0011 28.9 9.9 94 83-201 3-112 (140)
125 PRK11175 universal stress prot 63.4 60 0.0013 34.1 10.5 99 80-203 150-273 (305)
126 PRK15456 universal stress prot 61.0 1.1E+02 0.0024 28.4 10.8 21 183-203 97-117 (142)
127 KOG2316 Predicted ATPase (PP-l 60.0 1.2E+02 0.0026 32.3 11.4 108 84-213 2-129 (277)
128 PRK11175 universal stress prot 59.5 85 0.0018 33.0 10.9 101 83-208 4-124 (305)
129 PLN02828 formyltetrahydrofolat 59.0 59 0.0013 35.1 9.5 83 61-159 39-131 (268)
130 PTZ00285 glucosamine-6-phospha 57.5 1.1E+02 0.0025 32.1 11.3 103 79-198 29-137 (253)
131 KOG0189 Phosphoadenosine phosp 53.9 99 0.0022 32.5 9.6 146 84-272 48-204 (261)
132 PRK12652 putative monovalent c 50.2 2.4E+02 0.0052 31.7 12.8 105 82-202 5-124 (357)
133 PF11734 TilS_C: TilS substrat 48.0 12 0.00025 32.2 1.8 34 641-676 22-55 (74)
134 cd05565 PTS_IIB_lactose PTS_II 45.3 47 0.001 30.5 5.4 68 84-159 2-80 (99)
135 PRK07765 para-aminobenzoate sy 44.0 11 0.00024 38.7 1.2 35 24-59 146-202 (214)
136 TIGR00853 pts-lac PTS system, 41.9 51 0.0011 29.8 5.0 69 83-159 4-83 (95)
137 PRK00955 hypothetical protein; 41.3 1.8E+02 0.004 35.0 10.7 22 83-104 66-88 (620)
138 PF04748 Polysacc_deac_2: Dive 40.8 1.1E+02 0.0024 31.7 7.9 87 93-206 103-189 (213)
139 COG0541 Ffh Signal recognition 40.1 3.1E+02 0.0067 31.9 11.7 99 85-211 104-202 (451)
140 PRK01254 hypothetical protein; 37.0 1.7E+02 0.0037 35.7 9.6 110 83-219 92-210 (707)
141 cd01400 6PGL 6PGL: 6-Phosphogl 35.9 1.6E+02 0.0036 30.2 8.3 99 82-198 22-126 (219)
142 PRK09522 bifunctional glutamin 33.9 1.3E+02 0.0029 35.4 8.0 19 255-273 330-348 (531)
143 PRK11070 ssDNA exonuclease Rec 33.9 4.5E+02 0.0097 31.5 12.4 107 62-203 54-163 (575)
144 PRK09590 celB cellobiose phosp 33.0 83 0.0018 29.1 5.0 84 83-176 2-98 (104)
145 PRK00443 nagB glucosamine-6-ph 32.4 4.2E+02 0.009 27.6 10.7 102 82-199 32-138 (261)
146 PRK06852 aldolase; Validated 31.8 3.5E+02 0.0076 29.9 10.3 106 82-199 92-209 (304)
147 PF02441 Flavoprotein: Flavopr 31.6 63 0.0014 30.3 4.1 27 83-109 1-27 (129)
148 KOG3425 Uncharacterized conser 31.4 1.9E+02 0.004 28.1 7.0 56 68-135 13-78 (128)
149 PF13481 AAA_25: AAA domain; P 31.0 1.2E+02 0.0025 29.6 6.0 63 137-201 126-189 (193)
150 PTZ00372 endonuclease 4-like p 30.2 9E+02 0.02 27.9 15.1 124 60-202 109-244 (413)
151 PRK07998 gatY putative fructos 28.2 6.3E+02 0.014 27.6 11.4 34 259-292 189-223 (283)
152 PRK08227 autoinducer 2 aldolas 27.2 2.4E+02 0.0052 30.4 7.9 97 82-198 74-178 (264)
153 PRK05920 aromatic acid decarbo 27.0 1.2E+02 0.0025 31.5 5.4 28 82-109 3-30 (204)
154 PF10566 Glyco_hydro_97: Glyco 27.0 1.1E+02 0.0023 33.2 5.3 80 135-214 29-117 (273)
155 PLN02360 probable 6-phosphoglu 26.5 3.6E+02 0.0077 28.8 9.1 83 63-154 19-108 (268)
156 TIGR00502 nagB glucosamine-6-p 26.2 6E+02 0.013 26.7 10.7 111 70-198 20-137 (259)
157 PF00448 SRP54: SRP54-type pro 25.6 2E+02 0.0042 29.3 6.7 58 85-157 5-62 (196)
158 PRK07313 phosphopantothenoylcy 24.8 1.2E+02 0.0025 30.7 4.9 27 83-109 2-28 (182)
159 TIGR00639 PurN phosphoribosylg 24.8 5.7E+02 0.012 26.0 9.8 89 83-201 1-89 (190)
160 PLN02331 phosphoribosylglycina 24.3 5.1E+02 0.011 26.8 9.5 88 84-201 1-88 (207)
161 PRK02122 glucosamine-6-phospha 24.2 6.2E+02 0.013 30.8 11.5 106 79-198 55-165 (652)
162 PRK08305 spoVFB dipicolinate s 23.6 1.3E+02 0.0028 31.0 5.0 29 81-109 4-33 (196)
163 cd05564 PTS_IIB_chitobiose_lic 23.5 1.3E+02 0.0028 27.1 4.4 69 84-160 1-80 (96)
164 TIGR00421 ubiX_pad polyprenyl 23.1 1.2E+02 0.0026 30.7 4.5 26 84-109 1-26 (181)
165 COG1139 Uncharacterized conser 23.0 6.3E+02 0.014 29.4 10.5 47 248-295 149-196 (459)
166 TIGR02113 coaC_strep phosphopa 22.9 1.4E+02 0.003 30.0 5.0 27 83-109 1-27 (177)
167 TIGR01923 menE O-succinylbenzo 22.6 4.7E+02 0.01 28.4 9.4 73 64-158 6-78 (436)
168 PRK06029 3-octaprenyl-4-hydrox 22.6 1.3E+02 0.0028 30.7 4.7 25 83-107 2-26 (185)
169 PRK13390 acyl-CoA synthetase; 22.0 4.5E+02 0.0097 29.4 9.3 73 63-157 30-102 (501)
170 PRK10867 signal recognition pa 21.6 6.4E+02 0.014 29.1 10.5 85 85-197 104-189 (433)
171 COG0299 PurN Folate-dependent 21.3 5.3E+02 0.012 26.9 8.7 89 84-202 2-90 (200)
172 PRK05647 purN phosphoribosylgl 20.8 2.7E+02 0.0059 28.5 6.6 88 83-200 2-89 (200)
173 COG2861 Uncharacterized protei 20.4 4.9E+02 0.011 28.1 8.4 112 59-203 101-218 (250)
174 PF00501 AMP-binding: AMP-bind 20.1 6.7E+02 0.014 27.0 9.9 72 64-157 28-99 (417)
No 1
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=100.00 E-value=1.7e-44 Score=399.44 Aligned_cols=288 Identities=24% Similarity=0.296 Sum_probs=225.3
Q ss_pred CCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEE
Q 005288 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVR 158 (704)
Q Consensus 79 l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~ 158 (704)
+.++++|+||||||+|||||++++.++.... .+.++.|+|||||+|++|++++++|+++|+++||++++.+
T Consensus 12 l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~---------~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~ 82 (436)
T PRK10660 12 LLTSRQILVAFSGGLDSTVLLHLLVQWRTEN---------PGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVER 82 (436)
T ss_pred cCCCCeEEEEecCCHHHHHHHHHHHHHHHhc---------CCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEE
Confidence 5678999999999999999999998764221 2247999999999999999999999999999999999998
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCcccccccccccccccccc
Q 005288 159 CDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238 (704)
Q Consensus 159 ~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~ 238 (704)
+++.. ...++|+.||..||.+|.+.+++. ++|++|||.|||+||+|||+.||+|+.||+||++...
T Consensus 83 ~~~~~---~~~~~e~~AR~~Ry~~~~~~~~~~--~~l~~aHh~DDq~ET~L~~L~rG~g~~gL~gm~~~~~--------- 148 (436)
T PRK10660 83 VQLDQ---RGLGIEAAARQARYQAFARTLLPG--EVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSP--------- 148 (436)
T ss_pred EeccC---CCCCHHHHHHHHHHHHHHHHHHhC--CEEEEcCchHHHHHHHHHHHHcCCChhhccccceecc---------
Confidence 76531 234799999999999999999874 6899999999999999999999999999999987542
Q ss_pred cccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHHhchhcc---ccCHHHHHHHHHHHHHHHH
Q 005288 239 HDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS---SCSFKSELQAVISACRRTR 315 (704)
Q Consensus 239 ~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~~L~pl~---~~~f~~~L~~~a~~~~~~~ 315 (704)
..++.++|||+.++|+||.+||+++|++|++||||.++.|.||+||+.+.|.. +|.+...+.++++.++++.
T Consensus 149 -----~~~~~liRPLL~~~k~ei~~ya~~~~l~~~~D~sN~~~~~~RN~iR~~vlP~L~~~~p~~~~~l~r~a~~~~~~~ 223 (436)
T PRK10660 149 -----FAGTRLIRPLLARSREELEQYAQAHGLRWIEDDSNQDDRYDRNFLRLRVLPLLQQRWPHFAEATARSAALCAEQE 223 (436)
T ss_pred -----cCCCcEeCCCccCCHHHHHHHHHHcCCCEEECCCCCCCccccHHHHHHhhHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 13467999999999999999999999999999999999999999999998875 5889999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCCceeEEeccccCCCchHHHHHHHHHHHHHHHhhCCcccccCchHHHHHHHHHc--CCCCCe
Q 005288 316 SYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRT--FPCKTS 393 (704)
Q Consensus 316 ~~Ld~~~~~ll~~~v~~~~~g~~~ldl~~l~~~~i~~i~l~r~L~~vl~~is~~~~p~r~~~l~~Ll~~l~~--~~~~~~ 393 (704)
+++++.++..+...... .+. +++..|.... ....++++...+.-. ....+....+..++..+.. .+.+..
T Consensus 224 ~~l~~~~~~~~~~~~~~--~~~--l~~~~l~~l~--~~~~~~ll~~~l~~~--~~~~~~~~~l~~~~~~l~~~~~~~~~~ 295 (436)
T PRK10660 224 QLLDELLAEDLAHLQTP--DGT--LSIDPLLAMS--DARRAAILRRWLAGQ--GAPMPSRDQLQRIWQEVALAREDAEPC 295 (436)
T ss_pred HHHHHHHHHHHHHhhcc--CCc--CcHHHHhhCC--HHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHhhccccCCe
Confidence 99998887766654321 222 4544443322 222334444443321 1233444455555555422 122345
Q ss_pred eeecceEEe
Q 005288 394 LTAAGCYLC 402 (704)
Q Consensus 394 ~Tl~Gc~~~ 402 (704)
.+.+|+.+.
T Consensus 296 ~~~~~~~~~ 304 (436)
T PRK10660 296 LRLGAFEIR 304 (436)
T ss_pred EEECCEEEE
Confidence 677888764
No 2
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=100.00 E-value=1.5e-45 Score=362.05 Aligned_cols=182 Identities=42% Similarity=0.608 Sum_probs=149.2
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccC
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~ 163 (704)
||+||||||+|||+|++++.++.... +.++.++|||||+|++|.++++.|+++|+++||++++..+++.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~----------~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~~- 69 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRN----------GIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDED- 69 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTT----------TTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--CH-
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhc----------CCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeeee-
Confidence 69999999999999999999986532 2389999999999999999999999999999999999998872
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccccccccccccccccc
Q 005288 164 GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243 (704)
Q Consensus 164 ~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~~~~~ 243 (704)
.....+.|+.||.+||++|.++|+++|+++|++|||+||++||+|||+.||+|+.|++||++.+.
T Consensus 70 -~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~ET~l~~l~rg~~~~~l~~~~~~~~-------------- 134 (182)
T PF01171_consen 70 -RKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQAETFLMNLLRGSGLRGLAGMPPVSP-------------- 134 (182)
T ss_dssp -CCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHHHHHHHHHHHT--CCCCC-S-SEEE--------------
T ss_pred -ecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCccHHHHHHHHHHhccchhhcccccccc--------------
Confidence 22345789999999999999999999999999999999999999999999999999999997642
Q ss_pred CCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHHh
Q 005288 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMS 291 (704)
Q Consensus 244 ~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~~ 291 (704)
..+++++|||+.++|+||++||+++|+||++||||.|+.|.||+||++
T Consensus 135 ~~~~~~iRPLl~~~k~ei~~~~~~~~i~~~~D~tN~~~~~~Rn~iR~~ 182 (182)
T PF01171_consen 135 FKGIKLIRPLLYVSKDEIRAYAKENGIPYVEDPTNYDERYKRNRIRNE 182 (182)
T ss_dssp ETTCEEE-GGGCS-HHHHHHHHHHTT-SSBS-CCGGCTTSHHHHHHHT
T ss_pred ccCcccCCcchhCCHHHHHHHHHHCCCcEEECcCCCCCcccHHHHhCc
Confidence 245899999999999999999999999999999999999999999985
No 3
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.7e-38 Score=331.78 Aligned_cols=231 Identities=30% Similarity=0.396 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHH
Q 005288 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143 (704)
Q Consensus 64 ~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V 143 (704)
+.+.+.+.+.+...... +++|+||||||+||++|+++|+++... .++.|+|||||+|+.++.+.+.+
T Consensus 4 ~~~~~~v~~~i~~~~~~-~~~ilVavSGGkDS~~ll~~L~~l~~~------------~~~~a~~Vd~~~~~~~~~~~~~~ 70 (298)
T COG0037 4 EKLERKVKRAIREFNLI-EYKILVAVSGGKDSLALLHLLKELGRR------------IEVEAVHVDHGLRGYSDQEAELV 70 (298)
T ss_pred HHHHHHHHHHHHhcccc-CCeEEEEeCCChHHHHHHHHHHHhccC------------ceEEEEEecCCCCCccchHHHHH
Confidence 45566677777765544 899999999999999999999887321 37899999999998889999999
Q ss_pred HHHHHhcCCeEEEEEccccCCCCC--CCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCc
Q 005288 144 SHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGL 221 (704)
Q Consensus 144 ~kl~~~LGIp~~Iv~~~~~~~~~~--~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GL 221 (704)
+++|+.+|+++++.+......... ..++|..||.+||++|.+.|++.|+++|+||||+||++||+|||+.||++..++
T Consensus 71 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~et~lm~l~~g~~~~~l 150 (298)
T COG0037 71 EKLCEKLGIPLIVERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQAETFLMNLLRGSGLRGL 150 (298)
T ss_pred HHHHHHhCCceEEEEEEeeccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHHHHHHHHHHcCcHhhHH
Confidence 999999999999988765543221 237999999999999999999999999999999999999999999999998889
Q ss_pred ccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHHhchhcc--ccC
Q 005288 222 AGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS--SCS 299 (704)
Q Consensus 222 aGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~~L~pl~--~~~ 299 (704)
.+|++.... .++..++|||+.++++||..|+..+|+||++|+||++..|.||++|+.+.|+. .|.
T Consensus 151 ~~~~~~~~~-------------~~~~~~iRPL~~~~~~ei~~~~~~~~l~~~~d~~n~~~~~~R~~~r~~l~~~~~~~p~ 217 (298)
T COG0037 151 RGMPPKRPF-------------EGGLLIIRPLLYVREKEIELYAKEKGLPYIEDESNYDLRYTRNRIREELLPLEEERPG 217 (298)
T ss_pred hhCCccccc-------------CCCCeeeeecccCCHHHHHHHHHHcCCCEeecCCCCCchhhHHHHHHHHHHHHHhCCC
Confidence 999876421 22226999999999999999999999999999999999999999999999986 466
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005288 300 FKSELQAVISACRRTRSYVEH 320 (704)
Q Consensus 300 f~~~L~~~a~~~~~~~~~Ld~ 320 (704)
+...+.+..+...........
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~ 238 (298)
T COG0037 218 LKFSLARAFELLRELRLLLEK 238 (298)
T ss_pred HHHHHHHHHHHhhhhHHhhhh
Confidence 666664444444444444333
No 4
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=100.00 E-value=7.8e-37 Score=316.65 Aligned_cols=219 Identities=15% Similarity=0.190 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHHc-CCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHH
Q 005288 64 TKYREAFSRRMAMA-GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142 (704)
Q Consensus 64 ~~~~e~f~~~i~~~-~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~ 142 (704)
+.+.+.+.+.+.+. ++.++++|+||+|||+||+|||++++++.... ++++++.++|||||+++.+. +.
T Consensus 10 ~~~~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~--------~~~~~l~av~vd~g~~~~~~---~~ 78 (258)
T PRK10696 10 KRLRRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRA--------PINFELVAVNLDQKQPGFPE---HV 78 (258)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhC--------CCCeEEEEEEecCCCCCCCH---HH
Confidence 44666677777765 57899999999999999999999998875432 23458999999999986432 35
Q ss_pred HHHHHHhcCCeEEEEEccccCC----CCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCC
Q 005288 143 VSHRVSDMGIRCEIVRCDWLDG----RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGV 218 (704)
Q Consensus 143 V~kl~~~LGIp~~Iv~~~~~~~----~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl 218 (704)
++++|+++||++++++.++... .+...++|..|+.+||.+|.++|+++|+++|++|||+||++||+|||+.||+|
T Consensus 79 ~~~~~~~lgI~~~v~~~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~Et~l~nl~rg~~- 157 (258)
T PRK10696 79 LPEYLESLGVPYHIEEQDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDILETLFLNMFYGGK- 157 (258)
T ss_pred HHHHHHHhCCCEEEEEecchhhhhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHHHHHHHHHHhCCc-
Confidence 7899999999999988664321 11223689999999999999999999999999999999999999999999975
Q ss_pred CCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCC-CCCCCchhHHHHHHhchhcc-
Q 005288 219 LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDP-TNRSPLFVRNRIRMSLGDLS- 296 (704)
Q Consensus 219 ~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDp-SN~d~~y~RNrIR~~L~pl~- 296 (704)
+.||++... ...+.+.++|||+.++|+||++|++++|+||++++ ||.++.|.||++|+.|..+.
T Consensus 158 --l~~m~~~~~------------~~~~~i~iiRPLl~~~k~eI~~y~~~~~lp~~~~~~~~~~~~~~R~~ir~~l~~L~~ 223 (258)
T PRK10696 158 --LKAMPPKLL------------SDDGKHIVIRPLAYVAEKDIIKFAEAKEFPIIPCNLCGSQENLQRQVVKEMLRDWEK 223 (258)
T ss_pred --ccccCCeee------------cCCCceeEEecCccCCHHHHHHHHHHcCCCEeeCCCCCCCchhHHHHHHHHHHHHHH
Confidence 566765321 12345789999999999999999999999999766 69999999999996665554
Q ss_pred -ccCHHHHHHHHH
Q 005288 297 -SCSFKSELQAVI 308 (704)
Q Consensus 297 -~~~f~~~L~~~a 308 (704)
+|.+..++.+..
T Consensus 224 ~~P~~~~~i~~~~ 236 (258)
T PRK10696 224 EYPGRIETMFRAL 236 (258)
T ss_pred HCccHHHHHHHHH
Confidence 567776666544
No 5
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=100.00 E-value=2.9e-37 Score=303.15 Aligned_cols=188 Identities=41% Similarity=0.568 Sum_probs=166.1
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccC
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~ 163 (704)
||+||+|||+||++|++++.++.+. .+.++.++|||||+++.+.++.+.++++|+.+|||++++++++..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~----------~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 70 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPK----------LKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKA 70 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH----------cCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchh
Confidence 5899999999999999999887543 123689999999999877889999999999999999999887543
Q ss_pred CCC-CCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCcccccccccccccccccccccc
Q 005288 164 GRP-KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242 (704)
Q Consensus 164 ~~~-~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~~~~ 242 (704)
..+ ...+.++.||.+||..|.++|+++|+++|++|||+||++||++|++.+|+|..|+.+|++.+.
T Consensus 71 ~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~e~~l~~~~~g~~~~~l~~~~~~~~------------- 137 (189)
T TIGR02432 71 LAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADDQAETILLRLLRGSGLRGLSGMKPIRI------------- 137 (189)
T ss_pred hccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHHcCCCcccccCCccccc-------------
Confidence 222 234789999999999999999999999999999999999999999999999999999986432
Q ss_pred cCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHHhchh
Q 005288 243 KNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGD 294 (704)
Q Consensus 243 ~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~~L~p 294 (704)
...++.++|||++++|+||++|++++|+||++||||++..|.||+||++|.|
T Consensus 138 ~~~~~~iirPL~~~~k~ei~~~~~~~~lp~~~~~~~~~~~~~R~~~r~~~~p 189 (189)
T TIGR02432 138 LGNGGQIIRPLLGISKSEIEEYLKENGLPWFEDETNQDDKYLRNRIRHELLP 189 (189)
T ss_pred cCCCCEEECCCCCCCHHHHHHHHHHcCCCeeeCCCCCCCcccHHHHHHHhCC
Confidence 1226789999999999999999999999999999999999999999999876
No 6
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=100.00 E-value=2.2e-34 Score=280.77 Aligned_cols=185 Identities=42% Similarity=0.627 Sum_probs=161.0
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccC
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~ 163 (704)
||+||+|||+||+++++++.++... .+.++.++|||||++..+.++.+.+.++|+.+|++++++....
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~----------~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 68 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPR----------LGLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVAL-- 68 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH----------cCCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeecc--
Confidence 5899999999999999999886432 1237899999999987777899999999999999999883211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccccccccccccccccc
Q 005288 164 GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243 (704)
Q Consensus 164 ~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~~~~~ 243 (704)
......++|..||.+||+.|.++|+++|+++|++|||+||++||++|++.||+|..++.+++.. ..
T Consensus 69 ~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~~e~~l~~l~~g~~~~~l~~~~~~--------------~~ 134 (185)
T cd01992 69 APKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQAETVLMRLLRGSGLRGLAGMPAR--------------IP 134 (185)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHHHHccCCcccccCCCcc--------------cC
Confidence 1122347899999999999999999999999999999999999999999999998888777532 12
Q ss_pred CCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHHhchh
Q 005288 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGD 294 (704)
Q Consensus 244 ~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~~L~p 294 (704)
..++.++|||++++|+||++|++++|+||++||||++..|.||+||++|.|
T Consensus 135 ~~~~~virPl~~~~k~eI~~~~~~~~l~~~~~~~~~~~~~~r~~~r~~~~~ 185 (185)
T cd01992 135 FGGGRLIRPLLGITRAEIEAYLRENGLPWWEDPSNEDPRYTRNRIRHELLP 185 (185)
T ss_pred CCCCeEECCCCCCCHHHHHHHHHHcCCCeEECCCCCCCcccHHHHHHhhCC
Confidence 456789999999999999999999999999999999999999999999865
No 7
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=100.00 E-value=3.2e-32 Score=264.48 Aligned_cols=177 Identities=21% Similarity=0.243 Sum_probs=149.3
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccC
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~ 163 (704)
||+||+|||+||++|++++.++.... +++.++.++|||||.+..+.++.+.++++|+++|+++++++.+..+
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 72 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRY--------PYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEEY 72 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhc--------CCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhhhc
Confidence 58999999999999999998874321 1245799999999998777889999999999999999999876321
Q ss_pred ------CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccccccccccc
Q 005288 164 ------GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237 (704)
Q Consensus 164 ------~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~ 237 (704)
..+...+.|..|+.+||..+.+.|+++|+++|++|||+||++||+||++.+|+|..++.++...
T Consensus 73 ~~~~~~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~et~l~~~~~g~~~~~~~~~~~~---------- 142 (185)
T cd01993 73 TDDIEVKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAETLLMNLLRGGILRLMRPGPIL---------- 142 (185)
T ss_pred chhhhhhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHHhcCHHHHcCCCCcc----------
Confidence 1123346788999999999999999999999999999999999999999999987766666520
Q ss_pred ccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCC
Q 005288 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSP 281 (704)
Q Consensus 238 ~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~ 281 (704)
.....++.++|||++++|+||++|++++|+||++|+||.+.
T Consensus 143 ---~~~~~~~~iirPL~~~~k~eI~~~~~~~~l~~~~d~~~~~~ 183 (185)
T cd01993 143 ---YLDEGDVTRIRPLVYVREKEIVLYAELNGLPFVEEECPYAG 183 (185)
T ss_pred ---ccCCCCceEEeecccCCHHHHHHHHHHcCCCcccCCCCCCC
Confidence 12345678999999999999999999999999999999864
No 8
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.97 E-value=3.2e-30 Score=290.81 Aligned_cols=216 Identities=20% Similarity=0.182 Sum_probs=163.7
Q ss_pred hhhhccCcCCC--------cceeeecc--------------chhhhhhhccccCCcCCccCCHHHHHHHHHHHHHHcCCC
Q 005288 23 ARLSLSSVKCR--------IPFTRSQY--------------LPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLK 80 (704)
Q Consensus 23 ~~~~~~~~~~~--------~~~~~~q~--------------~~f~~~~c~~~~~w~~~~~~~~~~~~e~f~~~i~~~~l~ 80 (704)
.++++++..|+ +++||+|| +||++.+|+|+++|+ +....++..+.+++.++.
T Consensus 142 ~~vlA~s~~~~v~ai~~~~~~i~GvQFHPE~~~t~~G~~il~nFl~~i~~~~~~~~--~~~~~~~~~~~l~~~v~~---- 215 (511)
T PRK00074 142 FKVIASTENCPIAAIANEERKFYGVQFHPEVTHTPQGKKLLENFVFDICGCKGDWT--MENFIEEAIEEIREQVGD---- 215 (511)
T ss_pred cEEEEEeCCCCEEEEEeCCCCEEEEeCCCCcCCchhHHHHHHHHHHHhcCCCCCcc--HHHHHHHHHHHHHHhcCC----
Confidence 45677777774 57999999 999999999999999 444555555555555543
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHH-HHHhcCCeEEEEEc
Q 005288 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH-RVSDMGIRCEIVRC 159 (704)
Q Consensus 81 ~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~k-l~~~LGIp~~Iv~~ 159 (704)
++|+||+|||+||+++++++++.. +.++.|+|||||++. ..|.+.+.+ +|+++||+++++++
T Consensus 216 --~~vlva~SGGvDS~vll~ll~~~l-------------g~~v~av~vd~g~~~--~~e~~~~~~~~a~~lgi~~~vvd~ 278 (511)
T PRK00074 216 --KKVILGLSGGVDSSVAAVLLHKAI-------------GDQLTCVFVDHGLLR--KNEAEQVMEMFREHFGLNLIHVDA 278 (511)
T ss_pred --CcEEEEeCCCccHHHHHHHHHHHh-------------CCceEEEEEeCCCCC--HHHHHHHHHHHHHHcCCcEEEEcc
Confidence 899999999999999999998642 237899999999853 345555665 77999999999988
Q ss_pred cccCCCC--CCCChHHH---HHHHHHHHHHHHHHHc-CCCEeecccccchhHHHHHHHHhccCCCC---Ccccccccccc
Q 005288 160 DWLDGRP--KQGHLQEA---ARDMRYRLFQKVCIQH-QIGVLLIAHHADDQAELFILRLSRNSGVL---GLAGMAFSSQI 230 (704)
Q Consensus 160 ~~~~~~~--~~gniEe~---AR~~RY~~L~~~A~e~-G~~~LatGHhaDDqaET~LmrL~RGsGl~---GLaGm~~~~~v 230 (704)
+..+... ...+.+.. +....|.+|.++|+++ |+++|++|||+||++||.+|+ ++++++ ++.||+..
T Consensus 279 ~~~f~~~l~g~~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn~dD~~Et~~~~--~~~~ik~~~~l~Gl~~~--- 353 (511)
T PRK00074 279 SDRFLSALAGVTDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLYPDVIESGGTK--KAATIKSHHNVGGLPED--- 353 (511)
T ss_pred HHHHHHhccCCCCcHHhhhhhhHHHHHHHHHHHHHccCCCEEEECCCcchhhhhcCCC--CccccccccCccCcChh---
Confidence 7543221 11244433 2344588999999999 999999999999999998877 555553 56666642
Q ss_pred cccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce---eeCCCCCC
Q 005288 231 FSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW---VEDPTNRS 280 (704)
Q Consensus 231 f~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~---veDpSN~d 280 (704)
....++|||++++|+||++|++++|+|| +.-|+...
T Consensus 354 --------------~~~~ii~PL~~l~K~EIr~~a~~~gLp~~~~~~~p~p~~ 392 (511)
T PRK00074 354 --------------MKLKLVEPLRELFKDEVRKLGLELGLPEEIVYRHPFPGP 392 (511)
T ss_pred --------------HhcccccchhhcCHHHHHHHHHHcCCCHHHhCCCCCCCC
Confidence 2245999999999999999999999994 44464443
No 9
>PLN02347 GMP synthetase
Probab=99.93 E-value=1.4e-25 Score=253.89 Aligned_cols=213 Identities=16% Similarity=0.087 Sum_probs=163.4
Q ss_pred hhhccCcCCC--------cceeeecc--------------chhhhhhhccccCCcCCccCCHHHHHHHHHHHHHHcCCCC
Q 005288 24 RLSLSSVKCR--------IPFTRSQY--------------LPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKP 81 (704)
Q Consensus 24 ~~~~~~~~~~--------~~~~~~q~--------------~~f~~~~c~~~~~w~~~~~~~~~~~~e~f~~~i~~~~l~~ 81 (704)
.+++++..|+ +++||+|| +||++.+|+|+++|+ +...+++..+.+++.++.
T Consensus 156 ~vlA~s~~~~iaai~~~~~~i~GvQFHPE~~~t~~G~~iL~NFl~~ic~~~~~~~--~~~~~~~~i~~i~~~~~~----- 228 (536)
T PLN02347 156 EVVAKSVQGAVVAIENRERRIYGLQYHPEVTHSPKGMETLRHFLFDVCGVTADWK--MQDVLEEQIELIKATVGP----- 228 (536)
T ss_pred EEEEEeCCCcEEEEEECCCCEEEEEccCCCCccchHHHHHHHHHHHHhCcCCCcC--cchHHHHHHHHHHHHhcc-----
Confidence 3455555553 67999999 899999999999999 666677777777776653
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHH-HHHHHhcCCeEEEEEcc
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV-SHRVSDMGIRCEIVRCD 160 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V-~kl~~~LGIp~~Iv~~~ 160 (704)
.++|+||+|||+||+++|++++++. +.+++|+|||+|+... .|.+.+ +.+|+++|+++++++++
T Consensus 229 ~~~vvvalSGGVDSsvla~l~~~al-------------G~~v~av~id~g~~~~--~E~~~~~~~~a~~lgi~~~vvd~~ 293 (536)
T PLN02347 229 DEHVICALSGGVDSTVAATLVHKAI-------------GDRLHCVFVDNGLLRY--KEQERVMETFKRDLHLPVTCVDAS 293 (536)
T ss_pred CCeEEEEecCChhHHHHHHHHHHHh-------------CCcEEEEEEeCCCCCh--hHHHHHHHHHHHHcCCcEEEEeCc
Confidence 4889999999999999999998752 2478999999999643 344555 77999999999999988
Q ss_pred ccCCCC--CCCChHHHHHHHHH---HHHHHHHHH----cC--CCEeecccccchhHHHHHHHHhccCCC--CCccccccc
Q 005288 161 WLDGRP--KQGHLQEAARDMRY---RLFQKVCIQ----HQ--IGVLLIAHHADDQAELFILRLSRNSGV--LGLAGMAFS 227 (704)
Q Consensus 161 ~~~~~~--~~gniEe~AR~~RY---~~L~~~A~e----~G--~~~LatGHhaDDqaET~LmrL~RGsGl--~GLaGm~~~ 227 (704)
..+... .-.|+|+.|+.++. +.|.+.+++ .| +++|++|+++||.+|+. .| .|. .--..|+.|
T Consensus 294 e~fl~~l~~~~~pe~k~~~~~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~~D~~es~----~r-~g~~~~~~~~ik~h 368 (536)
T PLN02347 294 ERFLSKLKGVTDPEKKRKIIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVIESC----PP-PGSGRTHSHTIKSH 368 (536)
T ss_pred HHHHhhCCCCCChHHhcchhCchHHHHHHHHHHHHHHhhCCCCcEEccCCccccccccc----CC-CCCccccccceeee
Confidence 755433 22289998877776 667766643 34 48999999999999962 11 111 114679999
Q ss_pred ccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc
Q 005288 228 SQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD 271 (704)
Q Consensus 228 ~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp 271 (704)
||+++ .+......++.||.+++|+|||++++++|+|
T Consensus 369 hn~~~--------l~~~~~~~ii~PL~~l~K~eVR~la~~lgl~ 404 (536)
T PLN02347 369 HNVGG--------LPKDMKLKLIEPLKLLFKDEVRKLGRLLGVP 404 (536)
T ss_pred ccccc--------ChHHHHCccccchhhCcHHHHHHHHHHcCCC
Confidence 98754 2333445699999999999999999999999
No 10
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=99.92 E-value=3.3e-25 Score=228.27 Aligned_cols=179 Identities=20% Similarity=0.172 Sum_probs=152.5
Q ss_pred CCcCCccCCHHHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCC
Q 005288 54 AHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133 (704)
Q Consensus 54 ~w~~~~~~~~~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR 133 (704)
+|+ +..++++..+++++++++ +++++|+|||+||++++.|++++ ++++++||+|||||
T Consensus 1 ~w~--~~~~ie~~i~~ir~~vg~------~kvi~alSGGVDSsv~a~L~~~A-------------iGd~l~cvfVD~GL- 58 (315)
T COG0519 1 MWT--MENFIEEAIEEIREQVGD------GKVILALSGGVDSSVAAVLAHRA-------------IGDQLTCVFVDHGL- 58 (315)
T ss_pred CCC--HHHHHHHHHHHHHHHhCC------ceEEEEecCCCcHHHHHHHHHHH-------------hhcceEEEEecCCc-
Confidence 477 666777778888888775 89999999999999999999876 45689999999998
Q ss_pred CCcHHHHHHHHHHHHh-cCCeEEEEEccccCCCCCCC--ChHHHHHHHHHHH---HHHHHHHcCCCEeecccccchhHHH
Q 005288 134 EESKEEANIVSHRVSD-MGIRCEIVRCDWLDGRPKQG--HLQEAARDMRYRL---FQKVCIQHQIGVLLIAHHADDQAEL 207 (704)
Q Consensus 134 ~eS~~Eae~V~kl~~~-LGIp~~Iv~~~~~~~~~~~g--niEe~AR~~RY~~---L~~~A~e~G~~~LatGHhaDDqaET 207 (704)
.+..|.+.|.+.... +|+++..+++...+.....| ++|++.+.+...| |++.|++.++++|++|+.|.|.+|+
T Consensus 59 -lR~~E~e~V~~~f~~~~~~nl~~VdA~~~Fl~~L~GvtDPE~KRKiIG~~FI~VFe~ea~k~~~~~LaQGTiYpDvIES 137 (315)
T COG0519 59 -LRKGEAEQVVEMFREHLGLNLIVVDAKDRFLSALKGVTDPEEKRKIIGREFIEVFEEEAKKLGAEFLAQGTIYPDVIES 137 (315)
T ss_pred -ccCCcHHHHHHHHHhhcCCceEEEchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCcceEEecccccceeee
Confidence 566788889996654 99999999988777554444 7888888777655 8999999999999999999999997
Q ss_pred HHHHHhccCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005288 208 FILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (704)
Q Consensus 208 ~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (704)
. . | .+ .+|++|||+++ +|+++.++++.||.+++|+|+|++++++|+|-
T Consensus 138 ~-----~--g-~~-~~IKSHHNVGG--------LP~~m~lkLvEPLr~LfKDEVR~lg~~LGlp~ 185 (315)
T COG0519 138 G-----T--G-KA-GTIKSHHNVGG--------LPEDMKLKLVEPLRELFKDEVRELGRELGLPE 185 (315)
T ss_pred c-----C--C-CC-CccccccccCC--------CccccceeeeHHHHHHhHHHHHHHHHHhCCCH
Confidence 5 2 2 23 78999999987 68899999999999999999999999999985
No 11
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=99.91 E-value=1.8e-24 Score=233.68 Aligned_cols=170 Identities=15% Similarity=0.162 Sum_probs=139.5
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCC--------CcHHHHHHHHHHHHhcCCeE
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE--------ESKEEANIVSHRVSDMGIRC 154 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~--------eS~~Eae~V~kl~~~LGIp~ 154 (704)
.+|+||+|||+||+++++++++. + .++.++|+|++.++ .+.+|.+.++++|+++|||+
T Consensus 1 ~kVlValSGGvDSsvla~lL~~~---G-----------~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~ 66 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKEQ---G-----------YEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPH 66 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHHc---C-----------CcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcE
Confidence 37999999999999999999752 2 26899999998653 26788999999999999999
Q ss_pred EEEEccccCC------------CCCCCChHHHHHH-HHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCC-
Q 005288 155 EIVRCDWLDG------------RPKQGHLQEAARD-MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLG- 220 (704)
Q Consensus 155 ~Iv~~~~~~~------------~~~~gniEe~AR~-~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~G- 220 (704)
+++++...+. .....+++..|.. +||.+|.++|+++|+++||||||+||++|| +|.||.+..+
T Consensus 67 ~vvd~~~~f~~~vi~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~~~---~L~rg~d~~kD 143 (346)
T PRK00143 67 YVVDFEKEFWDRVIDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATGHYARIRDGR---ELLRGVDPNKD 143 (346)
T ss_pred EEEeCHHHHHHHHHHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccccc---eEEEccCCCcC
Confidence 9998754221 1122367877765 899999999999999999999999999988 8999988776
Q ss_pred ----cccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHH
Q 005288 221 ----LAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRN 286 (704)
Q Consensus 221 ----LaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RN 286 (704)
|.+|+. .....+++||.+++|+||++||+++||||+++|++++..|..+
T Consensus 144 qsy~l~~l~~-----------------~~l~~~i~PL~~~~K~eVr~~A~~~gl~~~~k~~s~~icf~~~ 196 (346)
T PRK00143 144 QSYFLYQLTQ-----------------EQLAKLLFPLGELTKPEVREIAEEAGLPVAKKKDSQGICFIGE 196 (346)
T ss_pred hhhhhccCCH-----------------HHhcceeccCccCCHHHHHHHHHHcCCCcCCCCCCCcccCCCc
Confidence 444432 1122589999999999999999999999999999999777643
No 12
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.90 E-value=1e-23 Score=209.90 Aligned_cols=152 Identities=21% Similarity=0.269 Sum_probs=123.2
Q ss_pred EEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccC-
Q 005288 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD- 163 (704)
Q Consensus 85 VlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~- 163 (704)
|+||+|||+||+++++++++.. + .++.++|||||.+ +.+|.+.++++|+++|+++++++.+...
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~--~-----------~~v~~v~vd~g~~--~~~~~~~~~~~a~~lgi~~~~~~~~~~~~ 65 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL--G-----------DRVLAVTATSPLF--PRRELEEAKRLAKEIGIRHEVIETDELDD 65 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh--C-----------CcEEEEEeCCCCC--CHHHHHHHHHHHHHcCCcEEEEeCCcccc
Confidence 6899999999999999997641 1 1688999999986 4678999999999999999999876321
Q ss_pred --CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccccccccccccccc
Q 005288 164 --GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDD 241 (704)
Q Consensus 164 --~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~~~ 241 (704)
......+.+..||..||.++.++|+++|+++|++|||+||++|+ .. |++..
T Consensus 66 ~~~~~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~----------~~---~~~~~-------------- 118 (202)
T cd01990 66 PEFAKNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDY----------RP---GLKAL-------------- 118 (202)
T ss_pred HHHhcCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCccc----------Ch---HHHHH--------------
Confidence 11112245668999999999999999999999999999999883 11 22211
Q ss_pred ccCCCeEEEeeCC--CCCHHHHHHHHHhCCCceeeCCCCCCC
Q 005288 242 LKNHSILLVRPLL--DFSKDDMYKICQGGNRDWVEDPTNRSP 281 (704)
Q Consensus 242 ~~~~~i~IIRPLL--~lsK~EIr~y~~~~gLp~veDpSN~d~ 281 (704)
.++.++|||+ .++|+||++|++++|+||++||||.+.
T Consensus 119 ---~~~~iirPL~~~~~~K~ei~~~a~~~gl~~~~~~~~~c~ 157 (202)
T cd01990 119 ---RELGVRSPLAEAGLGKAEIRELARELGLPTWDKPAMACL 157 (202)
T ss_pred ---HHcCCcCchhhcCCCHHHHHHHHHHcCCCCcCCCCcchH
Confidence 1245899999 599999999999999999999999763
No 13
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=99.90 E-value=1.1e-23 Score=223.14 Aligned_cols=165 Identities=20% Similarity=0.113 Sum_probs=125.4
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCC-eEEEEEcccc
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDWL 162 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGI-p~~Iv~~~~~ 162 (704)
||+||+|||+||++||+++++.. +.+++|+|||||+.. ..|.+.++++|+++|+ ++++++.+..
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~l-------------G~~v~aV~vd~g~~~--~~E~~~~~~~~~~~g~i~~~vvd~~e~ 65 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAI-------------GDRLTCVFVDNGLLR--KNEAERVEELFSKLLGINLIVVDASER 65 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHh-------------CCcEEEEEecCCCCC--hHHHHHHHHHHHHhCCCcEEEEcCcHH
Confidence 58999999999999999998641 236899999999953 5688899999999887 9999988753
Q ss_pred CCCC--CCCChHHHH---HHHHHHHHHHHHHHcC-CCEeecccccchhHHHHHHHHhccCCCCCcccccccccccccccc
Q 005288 163 DGRP--KQGHLQEAA---RDMRYRLFQKVCIQHQ-IGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY 236 (704)
Q Consensus 163 ~~~~--~~gniEe~A---R~~RY~~L~~~A~e~G-~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~ 236 (704)
+... ...+++..+ ++.+|+.|.++|++.| +++|++|||+||++|+..++.. +. .|+.++++.+
T Consensus 66 fl~~l~~v~npe~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~~Es~~~~~~-~~------~IKs~~n~~G---- 134 (295)
T cd01997 66 FLSALKGVTDPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDVIESGSGKGS-AD------TIKSHHNVGG---- 134 (295)
T ss_pred HHHHhcCCCCHHHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccchhhhcccccc-cc------cccccccccc----
Confidence 3221 123566654 4678999999999999 9999999999999999865433 11 1222222211
Q ss_pred cccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce---eeCCCC
Q 005288 237 SCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW---VEDPTN 278 (704)
Q Consensus 237 ~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~---veDpSN 278 (704)
.+....+.+++||++++|+||+++++++|+|+ +.-|..
T Consensus 135 ----l~a~~~~~vi~PL~~l~K~EVR~lar~lGLp~~~~~~~Pfp 175 (295)
T cd01997 135 ----LPEDMKLKLIEPLRDLFKDEVRELGRELGLPEEIVERHPFP 175 (295)
T ss_pred ----cchHhhCCcccccccCcHHHHHHHHHHcCCCchhhCCCCCC
Confidence 11223456999999999999999999999998 666733
No 14
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=99.89 E-value=8.3e-23 Score=217.91 Aligned_cols=171 Identities=20% Similarity=0.204 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHH
Q 005288 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142 (704)
Q Consensus 63 ~~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~ 142 (704)
+++..+.+++.++. ++|+||+|||+||++|++++++.. +.+++|+|||||++. ..|.+.
T Consensus 3 ~~~~~~~l~~~v~~------~kVvValSGGVDSsvla~ll~~~~-------------G~~v~av~vd~G~~~--~~E~e~ 61 (311)
T TIGR00884 3 IEEAVEEIREQVGD------AKVIIALSGGVDSSVAAVLAHRAI-------------GDRLTCVFVDHGLLR--KGEAEQ 61 (311)
T ss_pred HHHHHHHHHHHhCC------CcEEEEecCChHHHHHHHHHHHHh-------------CCCEEEEEEeCCCCC--hHHHHH
Confidence 44555666665543 899999999999999999997642 237999999999974 356666
Q ss_pred HHHHH-HhcCCeEEEEEccccCCCC--CCCChHHH---HHHHHHHHHHHHHHHcC-CCEeecccccchhHHHHHHHHhcc
Q 005288 143 VSHRV-SDMGIRCEIVRCDWLDGRP--KQGHLQEA---ARDMRYRLFQKVCIQHQ-IGVLLIAHHADDQAELFILRLSRN 215 (704)
Q Consensus 143 V~kl~-~~LGIp~~Iv~~~~~~~~~--~~gniEe~---AR~~RY~~L~~~A~e~G-~~~LatGHhaDDqaET~LmrL~RG 215 (704)
+.+.+ +++||+++++++++.+... ...+++.. +...+|+.|.++|+++| +++|++|||+||++|+.. |
T Consensus 62 ~~~~~~~~lgi~~~vvd~~e~fl~~l~~v~~p~~~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~~Es~~-----G 136 (311)
T TIGR00884 62 VVKTFGDRLGLNLVYVDAKERFLSALKGVTDPEEKRKIIGRVFIEVFEREAKKIGDAEYLAQGTIYPDVIESAA-----G 136 (311)
T ss_pred HHHHHHHHcCCcEEEEeCcHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCChhhhhhcc-----C
Confidence 76654 5899999999987644221 12244443 44567889999999999 999999999999999864 2
Q ss_pred CC-----CCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc---eeeCC
Q 005288 216 SG-----VLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD---WVEDP 276 (704)
Q Consensus 216 sG-----l~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp---~veDp 276 (704)
.. ..++.||+. ...+.+++||++++|+||+++++++|+| .+..|
T Consensus 137 ~~~~iks~~~~~gl~~-----------------~~~~~ii~PL~~l~K~EVr~la~~lgLp~~~~~~~P 188 (311)
T TIGR00884 137 TAHVIKSHHNVGGLPE-----------------DMKLKLVEPLRELFKDEVRKLGKELGLPEEIVWRHP 188 (311)
T ss_pred hhHhhhccCccccCCh-----------------hhcCceEEEcccCcHHHHHHHHHHcCCCHHHhhCCC
Confidence 10 113333432 2335699999999999999999999999 45555
No 15
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=99.88 E-value=1.2e-22 Score=219.63 Aligned_cols=170 Identities=15% Similarity=0.144 Sum_probs=139.1
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCC------CCcHHHHHHHHHHHHhcCCeEEEE
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR------EESKEEANIVSHRVSDMGIRCEIV 157 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR------~eS~~Eae~V~kl~~~LGIp~~Iv 157 (704)
+|+||+|||+||+++++++++. + .+++++|+|++.. ..+.+|.+.++++|+++||+++++
T Consensus 1 kVlValSGGvDSsvla~lL~~~---g-----------~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vv 66 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQ---G-----------YEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVV 66 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHc---C-----------CcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEE
Confidence 5899999999999999999753 2 2689999999752 246788999999999999999999
Q ss_pred EccccCC------------CCCCCChHHHHHH-HHHHHHHHHHHHcCCCEeecccccchhHHH-HHHHHhccCCCCC---
Q 005288 158 RCDWLDG------------RPKQGHLQEAARD-MRYRLFQKVCIQHQIGVLLIAHHADDQAEL-FILRLSRNSGVLG--- 220 (704)
Q Consensus 158 ~~~~~~~------------~~~~gniEe~AR~-~RY~~L~~~A~e~G~~~LatGHhaDDqaET-~LmrL~RGsGl~G--- 220 (704)
+++..+. .....|++..|.+ +||.+|.++|++.|+++||||||++|+.|+ ..+++.||.+..+
T Consensus 67 d~~~~f~~~v~~~~i~~~~~g~tpnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~~~~~~~~l~rg~d~~kdqs 146 (349)
T cd01998 67 NFEKEYWEKVFEPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEEDNNGRYRLLRGVDPNKDQS 146 (349)
T ss_pred ECcHHHHHHHHHHHHHHHHcCCCCCchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeeecCCCceEEeecCCCCCCcc
Confidence 8764221 1123477887755 799999999999999999999999999998 8888889887654
Q ss_pred --cccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchh
Q 005288 221 --LAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFV 284 (704)
Q Consensus 221 --LaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~ 284 (704)
|.+|+.. ....+++||.+++|+||++|++++|+|.+++|.+++..|.
T Consensus 147 y~L~~~~~~-----------------~l~~ii~PL~~~~K~eVr~~A~~~gl~~~~k~~s~~iCFi 195 (349)
T cd01998 147 YFLSQLSQE-----------------QLSRLIFPLGDLTKPEVREIAKELGLPVAKKKDSQGICFI 195 (349)
T ss_pred eEeccCCHH-----------------HHhheeecCCCCCHHHHHHHHHHcCCCCCCCCCCCceEEe
Confidence 5555421 1235999999999999999999999999999999997764
No 16
>PRK00919 GMP synthase subunit B; Validated
Probab=99.88 E-value=2.3e-22 Score=213.92 Aligned_cols=155 Identities=23% Similarity=0.201 Sum_probs=119.0
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~ 162 (704)
++|+||+|||+||++||+++++. ++.+++|+|||||++ +..|.+.++++|+++ +++++++++..
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~~-------------lG~~v~aV~vD~G~~--~~~E~e~a~~~~~~~-i~~~vvd~~e~ 85 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHRA-------------IGDRLTPVFVDTGLM--RKGETERIKETFSDM-LNLRIVDAKDR 85 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHHH-------------hCCeEEEEEEECCCC--CHHHHHHHHHHHhcc-CCcEEEECCHH
Confidence 89999999999999999999764 124799999999996 367899999999988 99999987653
Q ss_pred CCCC--CCCChHH---HHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccccccccccc
Q 005288 163 DGRP--KQGHLQE---AARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237 (704)
Q Consensus 163 ~~~~--~~gniEe---~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~ 237 (704)
+... ...+++. .|++.+|+.|.++|++.|+++|++|||+||++|+. | | +..++++++
T Consensus 86 fl~~L~~v~npe~rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~iE~r------~-~------iks~~nv~g----- 147 (307)
T PRK00919 86 FLDALKGVTDPEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDWIESE------G-G------IKSHHNVGG----- 147 (307)
T ss_pred HHHhccCCCChHHhhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhcc------C-c------ccccccccc-----
Confidence 2111 1124443 34566889999999999999999999999999972 2 1 222222211
Q ss_pred ccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceee
Q 005288 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVE 274 (704)
Q Consensus 238 ~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ve 274 (704)
.+....+.+++||++++|+||+++++++|+|+..
T Consensus 148 ---l~~~~~~~Ii~PL~~l~K~EVr~la~~lGLp~~~ 181 (307)
T PRK00919 148 ---LPEGMVLKIVEPLRDLYKDEVREVARALGLPEEI 181 (307)
T ss_pred ---cChhhcCCcccCchhCcHHHHHHHHHHcCCChhh
Confidence 1122345699999999999999999999999873
No 17
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.86 E-value=3.7e-21 Score=208.89 Aligned_cols=181 Identities=14% Similarity=0.048 Sum_probs=137.8
Q ss_pred CCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEE
Q 005288 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIV 157 (704)
Q Consensus 78 ~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv 157 (704)
+++++++|+||+|||+||+++|+++++. | .+++++|+|++...++.++.+.++++|+++|||++++
T Consensus 1 ~~~~~~kVlValSGGVDSsvaa~LL~~~---G-----------~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vv 66 (360)
T PRK14665 1 MMEKNKRVLLGMSGGTDSSVAAMLLLEA---G-----------YEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITY 66 (360)
T ss_pred CCCCCCEEEEEEcCCHHHHHHHHHHHHc---C-----------CeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEE
Confidence 4678899999999999999999999752 3 3789999998766556778899999999999999999
Q ss_pred EccccCC------------CCCCCChHHHHHH-HHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCcccc
Q 005288 158 RCDWLDG------------RPKQGHLQEAARD-MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM 224 (704)
Q Consensus 158 ~~~~~~~------------~~~~gniEe~AR~-~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm 224 (704)
+++..+. .....+++..|++ +||.+|.++|+++|+++||||||+.++.++...+|.+|.......++
T Consensus 67 d~~~~f~~~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~~~~~~~~~~l~~g~D~~kDQSy 146 (360)
T PRK14665 67 DARKVFRKQIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVRKQWIDGNYYITPAEDVDKDQSF 146 (360)
T ss_pred ecHHHHHHHHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccceeccCCcEEEEeecCCCCCceE
Confidence 8753210 1123478888876 78999999999999999999999998776655667777654432211
Q ss_pred cccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCC-ceeeCCCCCCCchh
Q 005288 225 AFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNR-DWVEDPTNRSPLFV 284 (704)
Q Consensus 225 ~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gL-p~veDpSN~d~~y~ 284 (704)
++...+...--.+++||.+++|+||+++|++.|+ +..+.+..++..|.
T Consensus 147 ------------fL~~l~~~~l~~~ifPLg~~~K~eVr~~A~~~gl~~~a~k~eSq~iCF~ 195 (360)
T PRK14665 147 ------------FLWGLRQEILQRMLLPMGGMTKSEARAYAAERGFEKVAKKRDSLGVCFC 195 (360)
T ss_pred ------------EecCCCHHHHhheeccCcCCCHHHHHHHHHHCCCCccCcCCCCCccccC
Confidence 0001111111257999999999999999999998 55677777776663
No 18
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.85 E-value=4.4e-21 Score=198.68 Aligned_cols=153 Identities=20% Similarity=0.235 Sum_probs=121.7
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccc
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~ 161 (704)
.++|+||+|||+||+++++++++. | .++.++|+|++.. +.+|.+.++++|+.+|+++++++.+.
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~---g-----------~~v~av~~~~~~~--~~~e~~~a~~~a~~lgi~~~ii~~~~ 75 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDA---G-----------TEVLAITVVSPSI--SPRELEDAIIIAKEIGVNHEFVKIDK 75 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHh---C-----------CCEEEEEecCCCC--CHHHHHHHHHHHHHcCCCEEEEEcHH
Confidence 588999999999999999999764 2 2689999999853 46688899999999999999998764
Q ss_pred cC--CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccccccccccccc
Q 005288 162 LD--GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239 (704)
Q Consensus 162 ~~--~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~ 239 (704)
.. ......+.+..|+..+|..+.++|+++|+++|++|||+||++++- .|+.++.
T Consensus 76 ~~~~~~~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~r----------pg~~a~~-------------- 131 (252)
T TIGR00268 76 MINPFRANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHR----------PGYRAVK-------------- 131 (252)
T ss_pred HHHHHHhCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCCccccccc----------HHHHHHH--------------
Confidence 21 111122456678899999999999999999999999999998631 1222221
Q ss_pred ccccCCCeEEEeeCCC--CCHHHHHHHHHhCCCceeeCCCCCC
Q 005288 240 DDLKNHSILLVRPLLD--FSKDDMYKICQGGNRDWVEDPTNRS 280 (704)
Q Consensus 240 ~~~~~~~i~IIRPLL~--lsK~EIr~y~~~~gLp~veDpSN~d 280 (704)
+ . .+++||.+ ++|+||++|++++|+||++||+|.+
T Consensus 132 ---~-~--~~~~PL~~~~l~K~eIr~la~~~gl~~~~~ps~~C 168 (252)
T TIGR00268 132 ---E-F--NGVSPWAEFGITKKEIREIAKSLGISFPDKPSEAC 168 (252)
T ss_pred ---H-c--CCCCcchhcCCCHHHHHHHHHHcCCCccCCCCCCc
Confidence 1 1 13599975 7999999999999999999999877
No 19
>PRK08349 hypothetical protein; Validated
Probab=99.85 E-value=1.5e-20 Score=187.94 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=111.1
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeE---EEEEcc
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRC---EIVRCD 160 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~---~Iv~~~ 160 (704)
|+++++|||+||+++++++++ .| .++.++|+|++. .+.....+.++++++.+|+++ ++++..
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~---~g-----------~~v~av~~d~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 66 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLR---RG-----------VEVYPVHFRQDE-KKEEKVRELVERLQELHGGKLKDPVVVDAF 66 (198)
T ss_pred cEEEEccCChhHHHHHHHHHH---cC-----------CeEEEEEEeCCH-HHHHHHHHHHHHHHHhcCCCcceEEEEcch
Confidence 689999999999999998864 22 379999999953 122222233344444556876 333321
Q ss_pred ccCC-------C-CCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCcccccccccccc
Q 005288 161 WLDG-------R-PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS 232 (704)
Q Consensus 161 ~~~~-------~-~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~ 232 (704)
.... . ....+.+..||.++|.++.++|+++|+++|++|||.||.+++.++++.++..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~a~~~l~nl~~~~~--------------- 131 (198)
T PRK08349 67 EEQGPVFEKLRELKKEKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQVASQTLDNLMVIST--------------- 131 (198)
T ss_pred HHhHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHHhcccc---------------
Confidence 1100 0 1123678889999999999999999999999999999999999999888542
Q ss_pred cccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005288 233 SYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (704)
Q Consensus 233 ~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (704)
..++.++|||+.++|+||++|++++|++..
T Consensus 132 -----------~~~i~i~rPL~~~~K~eI~~~a~~~g~~~~ 161 (198)
T PRK08349 132 -----------ATDLPVLRPLIGLDKEEIVKIAKEIGTFEI 161 (198)
T ss_pred -----------ccCCeEEcCCCCCCHHHHHHHHHHcCChhh
Confidence 123569999999999999999999996644
No 20
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=99.85 E-value=1.8e-20 Score=183.25 Aligned_cols=152 Identities=16% Similarity=0.151 Sum_probs=118.3
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCc--HHHHHHHHHHHHhcCCeEEEEEccc
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES--KEEANIVSHRVSDMGIRCEIVRCDW 161 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS--~~Eae~V~kl~~~LGIp~~Iv~~~~ 161 (704)
+|+||+|||+||+++++++++. | .+++++|+|+|++... .+++..+.+.+..+++++.+..++.
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~---g-----------~~v~av~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 66 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR---G-----------IEVDALHFNSGPFTSEKAREKVEDLARKLARYSPGHKLVVIIF 66 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc---C-----------CeEEEEEEeCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEeC
Confidence 5899999999999999999753 3 3789999999997532 2345556666677877665433322
Q ss_pred cC------C-CCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCcccccccccccccc
Q 005288 162 LD------G-RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY 234 (704)
Q Consensus 162 ~~------~-~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~ 234 (704)
.. . .....+++..||.++|..+.++|+++|+++|++|||+||.+++.++++.+..
T Consensus 67 ~~~~~~~~~~~~~~~~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D~~~~~~~~l~~~~------------------ 128 (177)
T cd01712 67 TFFVQKEIYGYGKEKYRCILCKRMMYRIAEKLAEELGADAIVTGESLGQVASQTLENLLVIS------------------ 128 (177)
T ss_pred cHHHHHHHHHhCCCccHhHHHHHHHHHHHHHHHHHcCCCEEEEccCcccchHHHHHhhhhcc------------------
Confidence 11 1 1123378999999999999999999999999999999999999888776542
Q ss_pred cccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeC
Q 005288 235 AYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVED 275 (704)
Q Consensus 235 ~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veD 275 (704)
...++.++|||+.++|+||+++++++|++-+.-
T Consensus 129 --------~~~~~~i~rPl~~~~K~eI~~~a~~~gl~~~~~ 161 (177)
T cd01712 129 --------SGTDLPILRPLIGFDKEEIIGIARRIGTYDISI 161 (177)
T ss_pred --------cCCCCeEECCCCCCCHHHHHHHHHHcCCcceec
Confidence 012467999999999999999999999987755
No 21
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.82 E-value=1.4e-20 Score=203.39 Aligned_cols=207 Identities=19% Similarity=0.155 Sum_probs=162.5
Q ss_pred Ccceeeecc--------------chhhhhhhccccCCcCCccCCHHHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHH
Q 005288 33 RIPFTRSQY--------------LPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMAL 98 (704)
Q Consensus 33 ~~~~~~~q~--------------~~f~~~~c~~~~~w~~~~~~~~~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaL 98 (704)
.+++||+|| +||++++|+|.++|+ +...+++-+..+++.++. .+|++++|||+||+|+
T Consensus 175 ~kkiyglqfhpEV~~t~~g~~ll~nFl~~vc~~~~n~t--menre~e~I~~i~k~vG~------~~Vl~~vSGgvdStV~ 246 (552)
T KOG1622|consen 175 LKKIYGLQFHPEVTLTPNGKELLKNFLFDVCGCSGNFT--MENREEECINEIRKWVGD------YKVLVAVSGGVDSTVC 246 (552)
T ss_pred hhhhhcCCCCCcccccCchhHHHHHHHHHHcCCccCcc--hhhhhHHHHHHHHHHhcc------cceEEEecCCchHHHH
Confidence 579999999 999999999999999 777777777888887775 7899999999999999
Q ss_pred HHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccCCCCCCC--ChHHHHH
Q 005288 99 CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG--HLQEAAR 176 (704)
Q Consensus 99 L~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~~~~~g--niEe~AR 176 (704)
+.|+.++..- ++++|+|||.|+ ....|++.|++-..++||++++++....+.....+ ++|++.+
T Consensus 247 a~Ll~~alg~------------~R~~ai~vdNG~--mrk~Ea~~V~~tl~~lgi~i~v~~as~~f~s~L~~~~dPE~KRk 312 (552)
T KOG1622|consen 247 AALLRRALGP------------DRVHAIHVDNGF--MRKKEAEQVEKTLVYLGIPITVVDASETFLSKLKGVTDPEEKRK 312 (552)
T ss_pred HHHHHHhhCC------------CceEEEEecccc--hhhhHHHHHHHHHHHcCCceEEeechHHHHHhhcccCCHHHhce
Confidence 9999876432 378999999998 56889999999888899999999988776544333 7888777
Q ss_pred HHHHHH---HHHHHHHc----CC--CEeecccccchhHHHHHHHHhccCCCCCcccccccccccccccccccccccCC--
Q 005288 177 DMRYRL---FQKVCIQH----QI--GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH-- 245 (704)
Q Consensus 177 ~~RY~~---L~~~A~e~----G~--~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~~~~~~~-- 245 (704)
.+...| +...+.+. +- .++|+|+.+.|.+|+.. ..|+| -+..|+.+++..+ +..+.
T Consensus 313 iIG~tfikv~~~~~~~l~~k~~~~~~flaQgtL~Pd~ieS~s---~~g~~--~a~tIKThhn~~~--------L~r~lrk 379 (552)
T KOG1622|consen 313 IIGRTFIKVFDPVASELNKKHGEKESFLAQGTLRPDLIESAS---VYGSG--HAETIKTHHNDTG--------LIRDLRK 379 (552)
T ss_pred ecccceeeeCcHHHHHhhhccCccceeeecccccchhhhhcc---ccCCc--hhhhhhcccccch--------HHHHHHH
Confidence 666544 34444443 32 38999999999999863 33443 2667887776532 11211
Q ss_pred CeEEEeeCCCCCHHHHHHHHHhCCCceee
Q 005288 246 SILLVRPLLDFSKDDMYKICQGGNRDWVE 274 (704)
Q Consensus 246 ~i~IIRPLL~lsK~EIr~y~~~~gLp~ve 274 (704)
..+++.||.++.|+|+++.++.+|+|-.-
T Consensus 380 lgK~ieplk~~~kDEvr~lgk~lGlp~~L 408 (552)
T KOG1622|consen 380 LGKVIEPLKDFHKDEVRELGKDLGLPESL 408 (552)
T ss_pred hcccCchhHHHHHHHHHHhhhhcCCchhh
Confidence 12689999999999999999999998643
No 22
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=99.82 E-value=1.3e-19 Score=171.61 Aligned_cols=152 Identities=18% Similarity=0.184 Sum_probs=123.1
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccC
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~ 163 (704)
+|+||+|||+||+||++|+.++.... .++.++|+|+|. +.++..++++++++++|++++++..+...
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-----------~~~~~v~~dtg~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 67 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-----------KPVPVIFLDTGY--EFPETYEFVDRVAERYGLPLVVVRPPDSP 67 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-----------cCceEEEeCCCC--CCHHHHHHHHHHHHHhCCCeEEECCCccH
Confidence 48999999999999999998753210 257899999998 56788899999999999999998765432
Q ss_pred C---------C-CCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccccccc
Q 005288 164 G---------R-PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSS 233 (704)
Q Consensus 164 ~---------~-~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~ 233 (704)
. . ....+.+..++.+|+..+.+++++.+.+.+++||++||..|+.+++...+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~~r~~~~~~~~~----------------- 130 (173)
T cd01713 68 AEGLALGLKGFPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESARRALLPVVWTD----------------- 130 (173)
T ss_pred HHHHHHhhhccCCccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccchhhhhCcccccc-----------------
Confidence 1 1 112356777899999999999999999999999999999999987655110
Q ss_pred ccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005288 234 YAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (704)
Q Consensus 234 ~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (704)
....++..++||++++++||++|++++|+||.
T Consensus 131 --------~~~~~~~~~~Pl~~w~~~di~~~~~~~~l~~~ 162 (173)
T cd01713 131 --------DGKGGILKVNPLLDWTYEDVWAYLARHGLPYN 162 (173)
T ss_pred --------CCCCCcEEEcchhcCCHHHHHHHHHHcCCCCC
Confidence 11235679999999999999999999999884
No 23
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=99.80 E-value=2.1e-19 Score=194.80 Aligned_cols=171 Identities=16% Similarity=0.124 Sum_probs=127.6
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCC--------CcHHHHHHHHHHHHhcCCeE
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE--------ESKEEANIVSHRVSDMGIRC 154 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~--------eS~~Eae~V~kl~~~LGIp~ 154 (704)
++|+||+|||+||+++|+++++. + .+++++|+++..+. .+.++.+.++++|+.+|||+
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~~---G-----------~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~ 66 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQQ---G-----------YEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPL 66 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHc---C-----------CeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCE
Confidence 37999999999999999999752 2 37899999764331 24568889999999999999
Q ss_pred EEEEccccCC------------CCCCCChHHHHHH-HHHHHHHHHHHHc-CCCEeecccccchhHHHHHHHHhccCCCC-
Q 005288 155 EIVRCDWLDG------------RPKQGHLQEAARD-MRYRLFQKVCIQH-QIGVLLIAHHADDQAELFILRLSRNSGVL- 219 (704)
Q Consensus 155 ~Iv~~~~~~~------------~~~~gniEe~AR~-~RY~~L~~~A~e~-G~~~LatGHhaDDqaET~LmrL~RGsGl~- 219 (704)
++++++..+. .....|+|..|++ +||..|.++|++. |+++||||||++|+-++.-.++.+|....
T Consensus 67 ~vid~~~~f~~~v~~~~~~~y~~g~tpnpC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya~~~~d~~~~~l~~~~d~~k 146 (352)
T TIGR00420 67 EKVNFQKEYWNKVFEPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELLGNDKIATGHYARIAEIEGKSLLLRALDKNK 146 (352)
T ss_pred EEEECHHHHHHHHHHHHHHHHHcCCCCCcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcceEeCCCCcEEEEEccCCCc
Confidence 9998753220 1123478888855 6789999999996 99999999999655433333444544311
Q ss_pred ----CcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchh
Q 005288 220 ----GLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFV 284 (704)
Q Consensus 220 ----GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~ 284 (704)
.|.+++ +..-..+++||.+++|+||++|++++|++|.+.|..++..|.
T Consensus 147 Dqsy~L~~l~-----------------~~~l~~~i~PL~~~~K~EVr~~A~~~gl~~~~k~~Sq~iCFi 198 (352)
T TIGR00420 147 DQSYFLYHLS-----------------HEQLAKLLFPLGELLKPEVRQIAKNAGLPTAEKKDSQGICFI 198 (352)
T ss_pred CcceecccCC-----------------HHHhhhhcccCCCCCHHHHHHHHHHcCCCCCCCCCCCCeEEe
Confidence 233322 112235899999999999999999999999999999987653
No 24
>PRK14561 hypothetical protein; Provisional
Probab=99.78 E-value=1.1e-18 Score=174.54 Aligned_cols=151 Identities=15% Similarity=0.229 Sum_probs=114.8
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccC
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~ 163 (704)
||+||+|||+||+++++++.++ .++.++|+|+|++ .|.+.++++|+.+|+++++++++...
T Consensus 2 kV~ValSGG~DSslll~~l~~~---------------~~v~a~t~~~g~~----~e~~~a~~~a~~lGi~~~~v~~~~~~ 62 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF---------------YDVELVTVNFGVL----DSWKHAREAAKALGFPHRVLELDREI 62 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc---------------CCeEEEEEecCch----hHHHHHHHHHHHhCCCEEEEECCHHH
Confidence 6999999999999999988543 1567999999984 36788999999999999999876532
Q ss_pred CCC------CCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccccccccccc
Q 005288 164 GRP------KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237 (704)
Q Consensus 164 ~~~------~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~ 237 (704)
... ..+.+...+..+++.++...+ .|+++|++|||.||.+||++++..++. .
T Consensus 63 ~~~~~~~~~~~~~P~~~~~~l~~~~l~~~a--~g~~~Ia~G~n~DD~~et~~r~~~~a~--------~------------ 120 (194)
T PRK14561 63 LEKAVDMIIEDGYPNNAIQYVHEHALEALA--EEYDVIADGTRRDDRVPKLSRSEIQSL--------E------------ 120 (194)
T ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHH--cCCCEEEEEecCCCcchhccHHHHhhh--------h------------
Confidence 100 011122334577888888877 899999999999999999998865532 1
Q ss_pred ccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCC
Q 005288 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSP 281 (704)
Q Consensus 238 ~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~ 281 (704)
+..++.++|||+.++|+||+++++++ +..-+-+|+.-+
T Consensus 121 -----~~~gi~iirPL~~~~K~eI~~la~~l-~~~~~~~~~~~~ 158 (194)
T PRK14561 121 -----DRKGVQYIRPLLGFGRKTIDRLVERL-FEIEEGESEEIP 158 (194)
T ss_pred -----cCCCcEEEeeCCCCCHHHHHHHHHhh-EEEEeccCCCcC
Confidence 12356799999999999999999987 445555665443
No 25
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.76 E-value=1.3e-18 Score=189.09 Aligned_cols=175 Identities=13% Similarity=0.113 Sum_probs=129.5
Q ss_pred CCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEE
Q 005288 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVR 158 (704)
Q Consensus 79 l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~ 158 (704)
+.++++|+||+|||+||+++++++++ .| .+++++|+++. .+|.+.++++|+++||++++++
T Consensus 2 ~~~~~kVlVa~SGGvDSsv~a~lL~~---~G-----------~eV~av~~~~~-----~~e~~~a~~va~~LGI~~~vvd 62 (362)
T PRK14664 2 KESKKRVLVGMSGGIDSTATCLMLQE---QG-----------YEIVGVTMRVW-----GDEPQDARELAARMGIEHYVAD 62 (362)
T ss_pred CCCCCEEEEEEeCCHHHHHHHHHHHH---cC-----------CcEEEEEecCc-----chhHHHHHHHHHHhCCCEEEEe
Confidence 45678999999999999999998864 22 36899999873 1244568999999999999998
Q ss_pred ccccCC------------CCCCCChHHHHH-HHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccc
Q 005288 159 CDWLDG------------RPKQGHLQEAAR-DMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMA 225 (704)
Q Consensus 159 ~~~~~~------------~~~~gniEe~AR-~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~ 225 (704)
++..+. .....|+|..|+ .+||..|.++|++.|+++||||||+++......++|.+|.....-..
T Consensus 63 ~~~~f~~~v~~~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~~~~~~~~l~~g~D~~kDQs-- 140 (362)
T PRK14664 63 ERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLEERNGHIYIVAGDDDKKDQS-- 140 (362)
T ss_pred ChHHHHHHHHHHhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCccccccCCCeEEEEEcCCCcchHH--
Confidence 864221 112347899887 56999999999999999999999997744334566777764332111
Q ss_pred ccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce-eeCCCCCCCchh
Q 005288 226 FSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW-VEDPTNRSPLFV 284 (704)
Q Consensus 226 ~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~-veDpSN~d~~y~ 284 (704)
+++...+.+.--.++.||.+++|+||++||+++|++- .+.+..++..|.
T Consensus 141 ----------yfl~~l~~~~l~~~ifPLg~~~K~evr~~A~~~gl~~~a~k~dSq~iCFi 190 (362)
T PRK14664 141 ----------YFLWRLGQDILRRCIFPLGNYTKQTVREYLREKGYEAKSKEGESMEVCFI 190 (362)
T ss_pred ----------HHHHhcCHHHHhHHhccCccCCHHHHHHHHHHcCCCCCCCCCCCCcceee
Confidence 0000011111124899999999999999999999997 777888887775
No 26
>PRK13820 argininosuccinate synthase; Provisional
Probab=99.76 E-value=8.3e-18 Score=184.37 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=114.1
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCC-cEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID-GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCD 160 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~-~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~ 160 (704)
.++|+||+|||+||++|++++++. ++. +++|+|+|+|++ .+|.+.++++|+++|+++++++++
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e~-------------~g~~~Viav~vd~g~~---~~e~~~a~~~a~~lGi~~~vvd~~ 65 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKEK-------------YGYDEVITVTVDVGQP---EEEIKEAEEKAKKLGDKHYTIDAK 65 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHHh-------------cCCCEEEEEEEECCCC---hHHHHHHHHHHHHcCCCEEEEeCH
Confidence 378999999999999999998642 122 799999999986 347778999999999999999886
Q ss_pred ccCCC-----------CCCC--ChHHHHHHHHHHHHHHHHHHcCCCEeeccc--ccchhH--HHHHHHHhccCCCCCccc
Q 005288 161 WLDGR-----------PKQG--HLQEAARDMRYRLFQKVCIQHQIGVLLIAH--HADDQA--ELFILRLSRNSGVLGLAG 223 (704)
Q Consensus 161 ~~~~~-----------~~~g--niEe~AR~~RY~~L~~~A~e~G~~~LatGH--haDDqa--ET~LmrL~RGsGl~GLaG 223 (704)
..+.. ...+ .....||..||..|.++|+++|+++|++|| +.+||+ |+.+ ++. +|
T Consensus 66 eef~~~~i~~~i~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~gnDq~rfe~~~----~a~---~l-- 136 (394)
T PRK13820 66 EEFAKDYIFPAIKANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGKGNDQLRFEAVF----RAS---DL-- 136 (394)
T ss_pred HHHHHHHHHHHHHhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCcchHHHHHHhh----Hhh---cC--
Confidence 32210 0111 345689999999999999999999999999 555999 6652 221 12
Q ss_pred ccccccccccccccccccccCCCeEEEeeCCC--CCHHHHHHHHHhCCCceeeCC
Q 005288 224 MAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD--FSKDDMYKICQGGNRDWVEDP 276 (704)
Q Consensus 224 m~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~--lsK~EIr~y~~~~gLp~veDp 276 (704)
.++.|+.+ ++|+|+++||+++|||+..++
T Consensus 137 ------------------------~viaP~re~~ltK~ei~~ya~~~gip~~~~~ 167 (394)
T PRK13820 137 ------------------------EVIAPIRELNLTREWEIEYAKEKGIPVPVGK 167 (394)
T ss_pred ------------------------eeeCchhccCCCHHHHHHHHHHcCCCCCcCC
Confidence 24556665 899999999999999997554
No 27
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=99.75 E-value=9.7e-18 Score=183.05 Aligned_cols=161 Identities=14% Similarity=0.186 Sum_probs=122.6
Q ss_pred CCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhc---C--Ce
Q 005288 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDM---G--IR 153 (704)
Q Consensus 79 l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~L---G--Ip 153 (704)
+..++++++++|||+||+++++++.+. | .++.++|+|+|.. .+.++.+.++++|+.+ + ++
T Consensus 169 ~g~~~kvlvllSGGiDS~vaa~ll~kr---G-----------~~V~av~~~~~~~-~~~~~~~~v~~l~~~l~~~~~~~~ 233 (371)
T TIGR00342 169 VGTQGKVLALLSGGIDSPVAAFMMMKR---G-----------CRVVAVHFFNEPA-ASEKAREKVERLANSLNETGGSVK 233 (371)
T ss_pred cCcCCeEEEEecCCchHHHHHHHHHHc---C-----------CeEEEEEEeCCCC-ccHHHHHHHHHHHHHHhhcCCCce
Confidence 345699999999999999999999652 3 2789999998864 3467788899999877 3 46
Q ss_pred EEEEEccccCC----CCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccc
Q 005288 154 CEIVRCDWLDG----RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQ 229 (704)
Q Consensus 154 ~~Iv~~~~~~~----~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~ 229 (704)
++++++..... .......+..||+++|.++.++|++.|+++|+||||++|.++++++++. ++..
T Consensus 234 l~~v~~~~~~~~i~~~~~~~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~asqtl~nl~---------~i~~--- 301 (371)
T TIGR00342 234 LYVFDFTDVQEEIIHIIPEGYTCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQVASQTLENLR---------VIQA--- 301 (371)
T ss_pred EEEEeCHHHHHHHHhcCCCCceeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhhhccHHHHHH---------HHhc---
Confidence 66666432211 0112245688999999999999999999999999999999998887752 2211
Q ss_pred ccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCC-ceeeCCCCCC
Q 005288 230 IFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNR-DWVEDPTNRS 280 (704)
Q Consensus 230 vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gL-p~veDpSN~d 280 (704)
..++.++|||+.++|+||++++++.|. ++...|.+.+
T Consensus 302 --------------~~~~~I~rPLi~~~K~EIi~~a~~iG~~~~s~~~~~~c 339 (371)
T TIGR00342 302 --------------VSNTPILRPLIGMDKEEIIELAKEIGTYEISIEPHEDC 339 (371)
T ss_pred --------------cCCCCEEeCCCCCCHHHHHHHHHHhCCcceeecCCCce
Confidence 113469999999999999999999996 4444566644
No 28
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=99.72 E-value=5.1e-17 Score=162.40 Aligned_cols=155 Identities=16% Similarity=0.213 Sum_probs=113.0
Q ss_pred EEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccCC
Q 005288 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG 164 (704)
Q Consensus 85 VlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~ 164 (704)
++|++|||+||+++++++.+. + .++.++|+|+|.+ ..+|.+.++++|+++|+++++++++....
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~~---g-----------~~v~~~~~~~~~~--~~~e~~~a~~~a~~lgi~~~~~~~~~~~~ 64 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKDE---G-----------YEVHAITFDYGQR--HSRELESARKIAEALGIEHHVIDLSLLKQ 64 (201)
T ss_pred CEEEeccHHHHHHHHHHHHHc---C-----------CcEEEEEEECCCC--CHHHHHHHHHHHHHhCCCeEEEechhhcc
Confidence 489999999999999998652 2 2689999999975 46688999999999999999998764211
Q ss_pred -C----------CC-CCChH----H---HHHHHH-HHHHHHHHHHcCCCEeecccccchhH------HHHHHHHhccCCC
Q 005288 165 -R----------PK-QGHLQ----E---AARDMR-YRLFQKVCIQHQIGVLLIAHHADDQA------ELFILRLSRNSGV 218 (704)
Q Consensus 165 -~----------~~-~gniE----e---~AR~~R-Y~~L~~~A~e~G~~~LatGHhaDDqa------ET~LmrL~RGsGl 218 (704)
. +. ..+.+ . -+|... +..+..+|+++|++.|++|||.||.+ ++|++++......
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~~~~~d~~~~f~~~~~~~~~~ 144 (201)
T TIGR00364 65 LGGSALTDESEIPPQKSNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDFSGYPDCRDEFVKAFNHALNL 144 (201)
T ss_pred cccccccCCCCCCCcCccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcCCCCCCCcHHHHHHHHHHHHh
Confidence 0 00 00111 0 123333 36678999999999999999999974 6677665543210
Q ss_pred CCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCC---CceeeCCCCCC
Q 005288 219 LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGN---RDWVEDPTNRS 280 (704)
Q Consensus 219 ~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~g---Lp~veDpSN~d 280 (704)
....+++|+|||++++|.||+++++++| ++| .+|...
T Consensus 145 -----------------------~~~~~~~i~~Pl~~~~K~eI~~la~~~g~~~~~~--~~t~sC 184 (201)
T TIGR00364 145 -----------------------GMLTPVKIRAPLMDLTKAEIVQLADELGVLDLVI--KLTYSC 184 (201)
T ss_pred -----------------------hcCCCeEEEECCcCCCHHHHHHHHHHcCCccccH--hhCCcC
Confidence 0123478999999999999999999999 775 344443
No 29
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=99.71 E-value=1.3e-16 Score=174.48 Aligned_cols=153 Identities=12% Similarity=0.149 Sum_probs=119.8
Q ss_pred CCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcC-------C
Q 005288 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMG-------I 152 (704)
Q Consensus 80 ~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LG-------I 152 (704)
..+.++++++|||.||+|+++++.+ .| .++.++|+|+| ..+.+.|+++|+.++ +
T Consensus 178 Gs~gkvlvllSGGiDSpVAa~ll~k---rG-----------~~V~~v~f~~g-----~~~~e~v~~la~~L~~~~~~~~i 238 (381)
T PRK08384 178 GTQGKVVALLSGGIDSPVAAFLMMK---RG-----------VEVIPVHIYMG-----EKTLEKVRKIWNQLKKYHYGGKA 238 (381)
T ss_pred CCCCcEEEEEeCChHHHHHHHHHHH---cC-----------CeEEEEEEEeC-----HHHHHHHHHHHHHhcccccCCcc
Confidence 3468999999999999999999975 23 37899999988 345778899999888 5
Q ss_pred eEEEEEcccc----C---CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccc
Q 005288 153 RCEIVRCDWL----D---GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMA 225 (704)
Q Consensus 153 p~~Iv~~~~~----~---~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~ 225 (704)
++++++.... . .....+..+..||+++|..+.++|+++|+++|+|||+++|++++.++|+.. +.
T Consensus 239 ~l~~v~~~~~~~v~~~i~~~~~~~~~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqvaSQtl~Nl~~---------i~ 309 (381)
T PRK08384 239 ELIVVKPQERERIIQKLKELKKENYTCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQVASQTLENMYI---------VS 309 (381)
T ss_pred eEEEEChHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcccchhHHHHHHHHHHH---------Hh
Confidence 5777664310 0 011234679999999999999999999999999999999999999887732 11
Q ss_pred ccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCC-CceeeCCC
Q 005288 226 FSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGN-RDWVEDPT 277 (704)
Q Consensus 226 ~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~g-Lp~veDpS 277 (704)
...++.++|||..++|+||++++++.| .+.-.-|.
T Consensus 310 -----------------~~~~lpilRPLi~~dK~EIi~~Ar~iGT~~~s~~~~ 345 (381)
T PRK08384 310 -----------------QASDLPIYRPLIGMDKEEIVAIAKTIGTFELSTLPE 345 (381)
T ss_pred -----------------ccCCCcEEeeCCCCCHHHHHHHHHHcCCcccccCCC
Confidence 112356999999999999999999999 66544444
No 30
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=99.71 E-value=1.3e-16 Score=154.59 Aligned_cols=143 Identities=17% Similarity=0.164 Sum_probs=105.7
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccC
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~ 163 (704)
||+|++|||+||+++++++.+. + .++.++|+|+|.+. ..+.+.++++++.+| |...+..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~---~-----------~~v~~~~~~~~~~~--~~~~~~~~~~~~~~g-~~~~~~~---- 59 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE---G-----------YEVHALSFDYGQRH--AKEEEAAKLIAEKLG-PSTYVPA---- 59 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc---C-----------CcEEEEEEECCCCC--hhHHHHHHHHHHHHC-CCEEEeC----
Confidence 5899999999999999998652 2 26889999999753 446688999999999 4433221
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhH------HHHHHHHhccCCCCCccccccccccccccccc
Q 005288 164 GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA------ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237 (704)
Q Consensus 164 ~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqa------ET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~ 237 (704)
.+ ...+.++.++|.++|++.|++|||.||.+ ++++..+.+..+
T Consensus 60 -----~~------~~~~~~l~~~a~~~g~~~i~~G~~~~d~~~~~~~~~~~~~~~~~~~~-------------------- 108 (169)
T cd01995 60 -----RN------LIFLSIAAAYAEALGAEAIIIGVNAEDYSGYPDCRPEFIEAMNKALN-------------------- 108 (169)
T ss_pred -----cC------HHHHHHHHHHHHHCCCCEEEEeeccCccCCCCCCCHHHHHHHHHHHH--------------------
Confidence 01 13457789999999999999999999974 344322211100
Q ss_pred ccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCC
Q 005288 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSP 281 (704)
Q Consensus 238 ~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~ 281 (704)
.....++.++|||+.++|.||+++++++|+||..+-|-..+
T Consensus 109 ---~~~~~~~~v~~PL~~~~K~ei~~~~~~~g~~~~~s~sC~~~ 149 (169)
T cd01995 109 ---LGTENGIKIHAPLIDLSKAEIVRLGGELGVPLELTWSCYNG 149 (169)
T ss_pred ---hhcCCCeEEEeCcccCCHHHHHHHHhHcCCChhheeeccCC
Confidence 01335678999999999999999999999999876655443
No 31
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=99.69 E-value=2.1e-16 Score=142.03 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=71.5
Q ss_pred EEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccCC
Q 005288 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG 164 (704)
Q Consensus 85 VlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~ 164 (704)
|+||+|||+||+++++++.++. .++.++|+|||++++ .+..+++|++
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~--------------~~~~~~~~~~~~~~~----~~~~~~~~~~--------------- 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG--------------YQVIAVTVDHGISPR----LEDAKEIAKE--------------- 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC--------------CCEEEEEEcCCCccc----HHHHHHHHHH---------------
Confidence 6899999999999999997641 158899999999863 3445555554
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHh
Q 005288 165 RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLS 213 (704)
Q Consensus 165 ~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~ 213 (704)
.||+.+.++|++.|+++|++|||+||++||++++..
T Consensus 48 -------------~r~~~~~~~a~~~g~~~i~~g~~~~D~~~~~~~~~~ 83 (103)
T cd01986 48 -------------AREEAAKRIAKEKGAETIATGTRRDDVANRALGLTA 83 (103)
T ss_pred -------------HHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHHH
Confidence 899999999999999999999999999999999888
No 32
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=99.68 E-value=4.6e-16 Score=161.10 Aligned_cols=168 Identities=14% Similarity=0.171 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHH
Q 005288 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143 (704)
Q Consensus 64 ~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V 143 (704)
+++.+.++..+... ..++|+||+|||+||+++++++.+.. + .++++++++++.. .+.+|.+.+
T Consensus 7 ~~l~~~l~~~v~~~---~~~~V~vglSGGiDSsvla~l~~~~~--~-----------~~~~~~~~~~~~~-~~~~e~~~a 69 (250)
T TIGR00552 7 EEIEDFLRGYVQKS---GAKGVVLGLSGGIDSAVVAALCVEAL--G-----------EQNHALLLPHSVQ-TPEQDVQDA 69 (250)
T ss_pred HHHHHHHHHHHHHh---CCCCEEEECCCcHHHHHHHHHHHHhh--C-----------CceEEEEECCccC-CCHHHHHHH
Confidence 44555556666553 35789999999999999999987642 1 2578899999863 356789999
Q ss_pred HHHHHhcCCeEEEEEccccCC-------C--CCCC--ChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHH
Q 005288 144 SHRVSDMGIRCEIVRCDWLDG-------R--PKQG--HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRL 212 (704)
Q Consensus 144 ~kl~~~LGIp~~Iv~~~~~~~-------~--~~~g--niEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL 212 (704)
+++|+.+||++++++++.... . +... ..+..|.++|+.+|..+|+++|+.+|+||||.++..
T Consensus 70 ~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~E~~~------- 142 (250)
T TIGR00552 70 LALAEPLGINYKNIDIAPIAASFQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKSELML------- 142 (250)
T ss_pred HHHHHHhCCeEEEEcchHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHHHHhh-------
Confidence 999999999999998764321 0 0000 124456679999999999999999999999976521
Q ss_pred hccCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce--eeCCCCCC
Q 005288 213 SRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW--VEDPTNRS 280 (704)
Q Consensus 213 ~RGsGl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~--veDpSN~d 280 (704)
|.+.. .......++||.+++|.||+++++.+|+|. ++.|...+
T Consensus 143 --G~~t~-----------------------~gd~~~~i~PL~~l~K~eV~~lA~~~g~p~~i~~k~psa~ 187 (250)
T TIGR00552 143 --GYFTK-----------------------YGDGGCDIAPIGDLFKTQVYELAKRLNVPERIIEKPPTAD 187 (250)
T ss_pred --CCeec-----------------------ccCCccCccccCCCcHHHHHHHHHHHCccHHHhCCCCCcC
Confidence 21100 001123689999999999999999999995 44444444
No 33
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.68 E-value=6.2e-16 Score=158.91 Aligned_cols=163 Identities=18% Similarity=0.238 Sum_probs=129.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHH
Q 005288 68 EAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRV 147 (704)
Q Consensus 68 e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~ 147 (704)
+.++..++. ..+++||+|||+||++||.++.+.. +.++.|||||... -...+.+.++.++
T Consensus 8 ~~l~~~ik~-----~~kv~vAfSGGvDSslLa~la~~~l-------------G~~v~AvTv~sP~--~p~~e~e~A~~~A 67 (269)
T COG1606 8 ERLKKAIKE-----KKKVVVAFSGGVDSSLLAKLAKEAL-------------GDNVVAVTVDSPY--IPRREIEEAKNIA 67 (269)
T ss_pred HHHHHHHhh-----cCeEEEEecCCccHHHHHHHHHHHh-------------ccceEEEEEecCC--CChhhhhHHHHHH
Confidence 344444544 3599999999999999999997652 2478999999986 3456888899999
Q ss_pred HhcCCeEEEEEccccC--CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccc
Q 005288 148 SDMGIRCEIVRCDWLD--GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMA 225 (704)
Q Consensus 148 ~~LGIp~~Iv~~~~~~--~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~ 225 (704)
+++||.|.+++.+... ......+.|..|++..|..+.+.|.+.|+++|+-|+|+||.-+ .-.|+.+..
T Consensus 68 ~~iGi~H~~i~~~~~~~~~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~----------~RPG~rA~k 137 (269)
T COG1606 68 KEIGIRHEFIKMNRMDPEFKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFD----------YRPGLRALK 137 (269)
T ss_pred HHhCCcceeeehhhcchhhccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcC----------CCcchhhHH
Confidence 9999999999877543 1223457899999999999999999999999999999999654 223444332
Q ss_pred ccccccccccccccccccCCCeEEEeeCCC--CCHHHHHHHHHhCCCceeeCCCCCC
Q 005288 226 FSSQIFSSYAYSCHDDLKNHSILLVRPLLD--FSKDDMYKICQGGNRDWVEDPTNRS 280 (704)
Q Consensus 226 ~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~--lsK~EIr~y~~~~gLp~veDpSN~d 280 (704)
. . .+-.||.+ ++|+||+++++.+|++|++.|+-.+
T Consensus 138 E------------------~--gi~sPl~e~gitk~eIre~a~~lgl~~~~kp~~aC 174 (269)
T COG1606 138 E------------------L--GIRSPLAEFGITKKEIREIAKSLGLPTWDKPSMAC 174 (269)
T ss_pred h------------------c--CCCChHHHhCCcHHHHHHHHHHcCCCcccCccccc
Confidence 1 1 25678875 8999999999999999999888766
No 34
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=99.67 E-value=2.1e-16 Score=173.91 Aligned_cols=161 Identities=16% Similarity=0.170 Sum_probs=118.0
Q ss_pred CCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcC-----Ce
Q 005288 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMG-----IR 153 (704)
Q Consensus 79 l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LG-----Ip 153 (704)
+..++++++++|||+||+++++++.+ .| .++.++|++..- -.+..+.+.+.++|+.++ ++
T Consensus 173 ~g~~gkvvvllSGGiDS~vaa~l~~k---~G-----------~~v~av~~~~~~-~~~~~~~~~~~~~a~~l~~~~~~i~ 237 (394)
T PRK01565 173 VGTSGKALLLLSGGIDSPVAGYLAMK---RG-----------VEIEAVHFHSPP-YTSERAKEKVIDLARILAKYGGRIK 237 (394)
T ss_pred cCCCCCEEEEECCChhHHHHHHHHHH---CC-----------CEEEEEEEeCCC-CCcHHHHHHHHHHHHHHHHhcCCCc
Confidence 34568999999999999999999864 23 278899995411 123556677888887774 99
Q ss_pred EEEEEccccCC--CCCCC--ChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccc
Q 005288 154 CEIVRCDWLDG--RPKQG--HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQ 229 (704)
Q Consensus 154 ~~Iv~~~~~~~--~~~~g--niEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~ 229 (704)
++++++++... ..... ..+-.+|+++|.++..+|++.|+++|+||||++|++++++.+ +.+|...
T Consensus 238 ~~vv~~~~~~~~i~~~~~~~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~~sqt~~~---------l~~i~~~-- 306 (394)
T PRK01565 238 LHVVPFTEIQEEIKKKVPESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVASQTLES---------MYAINAV-- 306 (394)
T ss_pred EEEEECHHHHHHHhhcCCCceEEEeHHHHHHHHHHHHHHHcCCCEEEEccccccccHHHHHH---------HHHHhhc--
Confidence 99999876421 11111 113358899999999999999999999999999998765443 3333211
Q ss_pred ccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCC-ceeeCCCCCC
Q 005288 230 IFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNR-DWVEDPTNRS 280 (704)
Q Consensus 230 vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gL-p~veDpSN~d 280 (704)
.++.|+|||+.++|+||++++++.|. +|...|+..+
T Consensus 307 ---------------~~~~V~rPLig~~K~EI~~lAr~iG~~~~s~~p~~~c 343 (394)
T PRK01565 307 ---------------TNLPVLRPLIGMDKEEIIEIAKEIGTYDISILPYEDC 343 (394)
T ss_pred ---------------cCcEEEECCCCCCHHHHHHHHHHhCCHHHhcCCCcCe
Confidence 13569999999999999999999998 5444455543
No 35
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=99.65 E-value=4.2e-15 Score=158.31 Aligned_cols=175 Identities=13% Similarity=0.012 Sum_probs=121.8
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~ 162 (704)
++++|++|||+||+||++|+.++... ....+.++|||+|. +.++..+++.++|+++|+++++...+..
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~----------~~~~~~vl~iDTG~--~FpEt~ef~d~~a~~~gl~l~v~~~~~~ 95 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYP----------GKLPFPLLHVDTGW--KFPEMIEFRDRRAKELGLELIVHSNPEG 95 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcc----------cCCCeeEEEEeCCC--CCHHHHHHHHHHHHHhCCCEEEEeChHH
Confidence 68999999999999999999875322 11256789999998 4577789999999999999998865421
Q ss_pred CC---CCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhH----HHHHHHHhccCCCCC-cccccccccccccc
Q 005288 163 DG---RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA----ELFILRLSRNSGVLG-LAGMAFSSQIFSSY 234 (704)
Q Consensus 163 ~~---~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqa----ET~LmrL~RGsGl~G-LaGm~~~~~vf~~~ 234 (704)
.. .+...+.+..|..++...|.++++++|++++++||+.||-. |+++.- |.....+ ...++|. .
T Consensus 96 i~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE~~~Ra~e~~fs~--r~~~~~wd~~~q~Pe------l 167 (301)
T PRK05253 96 IARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDEEKSRAKERIFSF--RDEFGQWDPKNQRPE------L 167 (301)
T ss_pred HhcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccchhhhhccCccccc--cccccccCccccChh------h
Confidence 11 11223567888999999999999999999999999999954 333321 1110000 1111111 1
Q ss_pred cccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCC
Q 005288 235 AYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPT 277 (704)
Q Consensus 235 ~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpS 277 (704)
|+.+......+....++||++++..||++|+..+|||+..-.-
T Consensus 168 w~~~~~~~~~g~~~rV~PL~~Wte~DIw~Yi~~~~IP~~pLY~ 210 (301)
T PRK05253 168 WNLYNGRINKGEHIRVFPLSNWTELDIWQYIERENIPIVPLYF 210 (301)
T ss_pred hhhccccccCCCeEEEeehhhCCHHHHHHHHHHcCCCCCcccc
Confidence 1111001123446678999999999999999999999964433
No 36
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=99.63 E-value=2.4e-15 Score=165.31 Aligned_cols=148 Identities=15% Similarity=0.180 Sum_probs=114.9
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCC-eEEEEEcccc
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDWL 162 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGI-p~~Iv~~~~~ 162 (704)
||+||+|||+||+++++++++. | .+++|+|+|+|++ .+|.+.++++|+++|+ ++++++++..
T Consensus 1 kVvla~SGGlDSsvll~~l~e~---g-----------~~V~av~id~Gq~---~~e~~~a~~~a~~lGi~~~~viD~~~e 63 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK---G-----------YEVIAYTADVGQP---EEDIDAIPEKALEYGAENHYTIDAREE 63 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc---C-----------CEEEEEEEecCCC---hHHHHHHHHHHHHhCCCeEEEEeCHHH
Confidence 5899999999999999998652 3 3799999999975 5688889999999998 8999988633
Q ss_pred CCC----C-CCCC---------hHHHHHHHHHHHHHHHHHHcCCCEeeccccc--chhHHHHHHHHhccCCCCCcccccc
Q 005288 163 DGR----P-KQGH---------LQEAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGMAF 226 (704)
Q Consensus 163 ~~~----~-~~gn---------iEe~AR~~RY~~L~~~A~e~G~~~LatGHha--DDqaET~LmrL~RGsGl~GLaGm~~ 226 (704)
+.. + ...+ ....+|.+++..+.++|++.|+++|+.||+. |||+. +.|..+...
T Consensus 64 f~~~~~~~~i~~n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~~gnDqvr--f~r~~~~~~--------- 132 (394)
T TIGR00032 64 FVKDYGFAAIQANAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGKGNDQER--FERSIRLLN--------- 132 (394)
T ss_pred HHHhhchhhhcCCccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccCCcchHHH--HHHHHHHhC---------
Confidence 311 1 1111 1235789999999999999999999999976 58865 223222211
Q ss_pred cccccccccccccccccCCCeEEEeeC--CCCCHHHHHHHHHhCCCceeeCCC
Q 005288 227 SSQIFSSYAYSCHDDLKNHSILLVRPL--LDFSKDDMYKICQGGNRDWVEDPT 277 (704)
Q Consensus 227 ~~~vf~~~~~~~~~~~~~~~i~IIRPL--L~lsK~EIr~y~~~~gLp~veDpS 277 (704)
.++.++.|| ..++|+|+++|++++|||+..++.
T Consensus 133 ------------------~~l~viaPLrew~l~r~ei~~ya~~~Gip~~~~~~ 167 (394)
T TIGR00032 133 ------------------PDLKVIAPWRDLNFTREEEIEYAIQCGIPYPMSKE 167 (394)
T ss_pred ------------------CCCeEECchhhcCCCHHHHHHHHHHcCCCeeEecC
Confidence 135699999 669999999999999999987653
No 37
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=99.63 E-value=2.5e-16 Score=170.84 Aligned_cols=176 Identities=16% Similarity=0.152 Sum_probs=106.8
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCC-------cHHHHHHHHHHHHhcCCeEE
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE-------SKEEANIVSHRVSDMGIRCE 155 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~e-------S~~Eae~V~kl~~~LGIp~~ 155 (704)
+||+||+|||+||+++|+||++ +| .++++||+.+.--++ +.++.+.++++|++||||++
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~---~G-----------~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~ 66 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKE---QG-----------YDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHY 66 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHH---CT------------EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EE
T ss_pred CeEEEEccCCHHHHHHHHHHHh---hc-----------ccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEE
Confidence 4899999999999999999975 33 389999988765422 34678899999999999999
Q ss_pred EEEccccCCC------------CCCCChHHHH-HHHHHHHHHHHHHH-cCCCEeecccccchhHH--HHHHHHhccCCCC
Q 005288 156 IVRCDWLDGR------------PKQGHLQEAA-RDMRYRLFQKVCIQ-HQIGVLLIAHHADDQAE--LFILRLSRNSGVL 219 (704)
Q Consensus 156 Iv~~~~~~~~------------~~~gniEe~A-R~~RY~~L~~~A~e-~G~~~LatGHhaDDqaE--T~LmrL~RGsGl~ 219 (704)
++++...+.. -.+.||+..| |.+++..|.+.|.+ .|+++|||||.+.=.-. +--..|.||.-..
T Consensus 67 v~d~~~~f~~~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~~~~~~~~L~r~~D~~ 146 (356)
T PF03054_consen 67 VVDLREEFWEEVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKDEKNGRYRLLRGADPK 146 (356)
T ss_dssp EEETHHHHHHHTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEES-TTEEEEEE-SSTT
T ss_pred EEChHHHHHHHHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEeeccCCceEEEecCCCC
Confidence 9998754321 1344899888 66899999999999 99999999998753221 2222333333111
Q ss_pred CcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchh
Q 005288 220 GLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFV 284 (704)
Q Consensus 220 GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~ 284 (704)
+.. .+++..++...--.++-||-+++|+||+++|++.|++..+.+..++..|.
T Consensus 147 -----KDQ-------SYfL~~l~~~~L~~~~FPLG~~~K~eVR~iA~~~gl~~a~k~eSq~iCFi 199 (356)
T PF03054_consen 147 -----KDQ-------SYFLSRLPQEQLSRLIFPLGELTKEEVREIAREAGLPVAEKKESQGICFI 199 (356)
T ss_dssp -----C---------GGGGTT--HHHHCCEE-TCCCS-HHHHHHHHHHCT-TTTT-----SSTTT
T ss_pred -----CCc-------eEEEEecCHHHHHhhcCCCCCCCHHHHHHHHHhcCCcccCccccceEEEe
Confidence 111 11111112221225899999999999999999999998887888886653
No 38
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=99.61 E-value=5.3e-15 Score=152.23 Aligned_cols=153 Identities=16% Similarity=0.191 Sum_probs=112.1
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCe-EEEEEccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR-CEIVRCDW 161 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp-~~Iv~~~~ 161 (704)
++++|++|||+||+++++++.+. + .+++++|+|+|.|. ..|.+.++++|+.+|++ |+++++++
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~---~-----------~~v~alt~dygq~~--~~El~~a~~ia~~~gi~~h~vid~~~ 65 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQ---Y-----------DEVHCVTFDYGQRH--RAEIDVARELALKLGARAHKVLDVTL 65 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhc---C-----------CeEEEEEEEeCCCC--HHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 47999999999999999888531 1 26899999999975 56889999999999996 99998886
Q ss_pred cCC--C----------CCC----C---ChHHHHHHHHHHHHHH-HHHHcCCCEeecccccchhHHHHHHHHhccCCCCC-
Q 005288 162 LDG--R----------PKQ----G---HLQEAARDMRYRLFQK-VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLG- 220 (704)
Q Consensus 162 ~~~--~----------~~~----g---niEe~AR~~RY~~L~~-~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~G- 220 (704)
... . +.. . +..--+|.+.+..+.. +|.+.|++.|++|.|++|... -.+|
T Consensus 66 l~~l~~s~Lt~~~~~~p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~~~----------YpDcr 135 (231)
T PRK11106 66 LNELAVSSLTRDSIPVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDFSG----------YPDCR 135 (231)
T ss_pred cccccccccccccccCCccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcCCC----------CCCCC
Confidence 431 0 000 0 1112367777777776 899999999999999999431 1222
Q ss_pred ---cccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCC-Cce
Q 005288 221 ---LAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGN-RDW 272 (704)
Q Consensus 221 ---LaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~g-Lp~ 272 (704)
+..|...-+ ......+.|..||++++|.||+++++++| +||
T Consensus 136 ~~Fi~A~~~~~~-----------~~~~~~i~I~aPl~~lsK~eI~~l~~~lg~v~~ 180 (231)
T PRK11106 136 DEFVKALNHAVS-----------LGMAKDIRFETPLMWLNKAETWALADYYGQLDL 180 (231)
T ss_pred HHHHHHHHHHHH-----------hccCCCcEEEecCCCCCHHHHHHHHHHcCCccc
Confidence 222221111 11123488999999999999999999999 988
No 39
>PRK00509 argininosuccinate synthase; Provisional
Probab=99.59 E-value=1.3e-14 Score=159.55 Aligned_cols=148 Identities=16% Similarity=0.163 Sum_probs=116.4
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCC-eEEEEEccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDW 161 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGI-p~~Iv~~~~ 161 (704)
++|+||+|||+||+++++++++. ++.+++|+|+|+|.+ +|.+.+++.|+++|+ +++++++..
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~-------------lG~eViavt~d~Gq~----~dle~a~~~A~~lGi~~~~viD~~~ 65 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKET-------------YGCEVIAFTADVGQG----EELEPIREKALKSGASEIYVEDLRE 65 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHh-------------hCCeEEEEEEecCCH----HHHHHHHHHHHHcCCCeEEEEcCHH
Confidence 68999999999999999998652 123799999999974 578889999999998 678777763
Q ss_pred cCC--------------CCCCCChHHHHHHHHHHHHHHHHHHcCCCEeeccccc--chhHHHHHHHHhccCCCCCccccc
Q 005288 162 LDG--------------RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGMA 225 (704)
Q Consensus 162 ~~~--------------~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHha--DDqaET~LmrL~RGsGl~GLaGm~ 225 (704)
.+. .-...+++..||...+..+.++|++.|+++|++||+. +||..-- .|+.++.
T Consensus 66 ef~~~~i~~~i~~n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~kGnDq~rf~----------~g~~al~ 135 (399)
T PRK00509 66 EFVRDYVFPAIRANALYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTGKGNDQVRFE----------LGIAALA 135 (399)
T ss_pred HHHHHhHHHHHHhChHhcCcCCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCcCCCCHHHHH----------HHHHHhC
Confidence 221 0122367889999999999999999999999999999 9998621 1222332
Q ss_pred ccccccccccccccccccCCCeEEEeeCCCC---CHHHHHHHHHhCCCceeeCC
Q 005288 226 FSSQIFSSYAYSCHDDLKNHSILLVRPLLDF---SKDDMYKICQGGNRDWVEDP 276 (704)
Q Consensus 226 ~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~l---sK~EIr~y~~~~gLp~veDp 276 (704)
| .+.++-|+.++ +|+|+++|++++|||.-.++
T Consensus 136 p-------------------el~VisPlre~~~~tK~eir~~A~~~Gipv~~~~ 170 (399)
T PRK00509 136 P-------------------DLKVIAPWREWDLKSREELIAYAEEHGIPIPVTK 170 (399)
T ss_pred C-------------------CCeeecchhhcCCCCHHHHHHHHHHcCCCCCCCC
Confidence 2 23589999987 99999999999999985433
No 40
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.57 E-value=1.8e-14 Score=162.39 Aligned_cols=160 Identities=14% Similarity=0.119 Sum_probs=112.9
Q ss_pred CCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhc----CCeEE
Q 005288 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDM----GIRCE 155 (704)
Q Consensus 80 ~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~L----GIp~~ 155 (704)
...+|+++++|||.||+|+++++.+ .| .++.++|+|+|.+.....+.+.++.+++++ +++++
T Consensus 175 g~~gk~lvllSGGiDS~va~~~~~k---rG-----------~~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~ 240 (482)
T PRK01269 175 GTQEDVLSLISGGFDSGVASYMLMR---RG-----------SRVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFI 240 (482)
T ss_pred cccCeEEEEEcCCchHHHHHHHHHH---cC-----------CEEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEE
Confidence 3458999999999999999999864 23 278999999998743333555565565554 45677
Q ss_pred EEEccccCCC---CCCCCh-HHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccccc
Q 005288 156 IVRCDWLDGR---PKQGHL-QEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231 (704)
Q Consensus 156 Iv~~~~~~~~---~~~gni-Ee~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf 231 (704)
++++...... ....+. ...+|++-+..-..+|++.|++.|+||||++|.+-+.++++.+...
T Consensus 241 ~v~~~~~~~~i~~~~~~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dvasqtl~nl~~~~~-------------- 306 (482)
T PRK01269 241 SVDFEPVVGEILEKVDDGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQVSSQTLTNLRLIDN-------------- 306 (482)
T ss_pred EEecHHHHHHHHhcCCCceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhhhhHHHHHHHhhhh--------------
Confidence 7664321110 000111 1144555555558999999999999999999999888888665321
Q ss_pred ccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCC
Q 005288 232 SSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNR 279 (704)
Q Consensus 232 ~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~ 279 (704)
..++.+.|||..++|.||.+++++.|++.++.++..
T Consensus 307 ------------~~~~~v~rPLi~~dK~EIi~~a~~ig~~~~s~~~p~ 342 (482)
T PRK01269 307 ------------VTDTLILRPLIAMDKEDIIDLAREIGTEDFAKTMPE 342 (482)
T ss_pred ------------hcCCceecCCcCCCHHHHHHHHHHhCChhhcccCCC
Confidence 012458899999999999999999998555555554
No 41
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=3.2e-14 Score=153.41 Aligned_cols=176 Identities=16% Similarity=0.122 Sum_probs=127.0
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCC-C----CCcHHHHHHHHHHHHhcCCeEEE
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL-R----EESKEEANIVSHRVSDMGIRCEI 156 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGL-R----~eS~~Eae~V~kl~~~LGIp~~I 156 (704)
..||+||+|||+||+|.|+||++ .| .+++++|+.... . ..+.++.+.+++.|+++|||+++
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~---QG-----------yeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~ 68 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKE---QG-----------YEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYV 68 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHHH---cC-----------CeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEE
Confidence 47999999999999999999975 34 378999976544 1 35778899999999999999999
Q ss_pred EEccccCCC------------CCCCChHHHH-HHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccc
Q 005288 157 VRCDWLDGR------------PKQGHLQEAA-RDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAG 223 (704)
Q Consensus 157 v~~~~~~~~------------~~~gniEe~A-R~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaG 223 (704)
+++...+.. -++.||+..| |.+.+..|.+.|.++|+++|||||.+.=.-..--..+.||--.
T Consensus 69 vdf~~~y~~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~~~~~~l~r~~D~----- 143 (356)
T COG0482 69 VDFEKEFWNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQREDEGIELLLRGVDL----- 143 (356)
T ss_pred EchHHHHHHHHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeecCCcccccccCCCc-----
Confidence 987643321 1344899999 9999999999999999999999998753321101112232211
Q ss_pred ccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCch
Q 005288 224 MAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLF 283 (704)
Q Consensus 224 m~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y 283 (704)
-+..+ +++.......--.++-||-++.|.|||++|.+.|++....+-.++..|
T Consensus 144 ~KDQs-------YfL~~~~~~ql~~~lFPlG~l~K~evR~iA~~~gL~~a~KkdS~~ICF 196 (356)
T COG0482 144 NKDQS-------YFLYALSQEQLERLLFPLGDLEKLEVRPIAAEKGLPTAKKKDSQGICF 196 (356)
T ss_pred ccchh-------heecccCHHHHhhccccCCCCCHHHHHHHHHHcCCCccCcccCCccee
Confidence 11110 111111111222578999999999999999999999988887777555
No 42
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=99.53 E-value=1.5e-14 Score=152.64 Aligned_cols=210 Identities=20% Similarity=0.220 Sum_probs=165.9
Q ss_pred HHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCe
Q 005288 74 MAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR 153 (704)
Q Consensus 74 i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp 153 (704)
+.+..+..+.+|.++.|||.||++|++.+..+..+ ++++.++..+.+|||++...+.-.+.|+....++|+|
T Consensus 43 ~~n~l~~rge~v~igasGgkdstvlA~v~~~Ln~r--------~~~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lP 114 (347)
T KOG2840|consen 43 VANKLFARGERVAIGASGGKDSTVLAYVLDALNER--------HDYGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLP 114 (347)
T ss_pred hccCccCCCCccccccccchhHHHHHHHHHHhhhh--------cCCCceeeeeeccccccceeccHHHHHHHhhhhcCCc
Confidence 34456889999999999999999999998876443 3456789999999999988888788889989999999
Q ss_pred EEEEEccccCC-CC--------C--CCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCC--C
Q 005288 154 CEIVRCDWLDG-RP--------K--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVL--G 220 (704)
Q Consensus 154 ~~Iv~~~~~~~-~~--------~--~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~--G 220 (704)
+.++....... +. . ..|-+..|--+|++++.+-+...++..++|||++||-+||+|||++||-.-. -
T Consensus 115 L~ivs~~dl~~~~tmd~i~~~i~~~~rn~ctfCgv~RrqaL~~ga~~l~~~~~~tghnaDD~aetvl~n~lrgds~rl~R 194 (347)
T KOG2840|consen 115 LCIVSYKDLYGEWTMDEIVSEIGQEIRNNCTFCGVFRRQALDRGADVLGAAELVTGHNADDWAETVLMNLLRGDSARLER 194 (347)
T ss_pred eEEecHHHHhccchHHHHHHHHhhhhhcCceeecHHHHHHHHhhccccchhhhhhcccchHHHHHHHHHHHHhHHHHhhh
Confidence 99998765443 11 1 2244556678999999999999999999999999999999999999986321 1
Q ss_pred cccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHHhchhccccCH
Q 005288 221 LAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF 300 (704)
Q Consensus 221 LaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~~L~pl~~~~f 300 (704)
+..+.. + ..+.+.+.-..||-.-++.||.-|+....+.|+.-.|++.+...|.--|..|.+++...
T Consensus 195 ~~~~~t------~-------~~e~~~~~r~kplk~~~~keivLya~~~~L~yFs~eCv~ap~a~rg~~r~~lk~le~~~- 260 (347)
T KOG2840|consen 195 LTEITT------P-------SLEMGIIPRLKPLKYASEKEIVLYASLSKLRYFSTECVKAPGASRGDARILLKDLERER- 260 (347)
T ss_pred cccccc------C-------ccccCccccccccccchhhehhhHHHHHHHHHHHHhhccCCcchHHHHHHHhhhhhhhC-
Confidence 111110 0 01223366789999999999999999999999999999999999999999999986432
Q ss_pred HHHHH
Q 005288 301 KSELQ 305 (704)
Q Consensus 301 ~~~L~ 305 (704)
+..|.
T Consensus 261 P~~lm 265 (347)
T KOG2840|consen 261 PRILM 265 (347)
T ss_pred chHHH
Confidence 44333
No 43
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=99.52 E-value=3.5e-14 Score=144.08 Aligned_cols=161 Identities=18% Similarity=0.197 Sum_probs=93.9
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCC-eEEEEEcccc
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDWL 162 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGI-p~~Iv~~~~~ 162 (704)
|++|.+|||.||+++++++++. + .+++++|||||+| ...|.+.++++|+.+|+ +++++++++.
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~~---~-----------~~v~al~~~YGq~--~~~El~~a~~i~~~l~v~~~~~i~l~~~ 64 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKKE---G-----------YEVYALTFDYGQR--HRRELEAAKKIAKKLGVKEHEVIDLSFL 64 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH---------------SEEEEEEEESSST--TCHHHHHHHHHHHHCT-SEEEEEE-CHH
T ss_pred CEEEEeCCCHHHHHHHHHHHHc---C-----------CeEEEEEEECCCC--CHHHHHHHHHHHHHhCCCCCEEeeHHHH
Confidence 6899999999999999987643 2 3799999999998 46788999999999999 9999998842
Q ss_pred CCC-C-----CCCChHH-------HH---HHHHHHHH----HHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCcc
Q 005288 163 DGR-P-----KQGHLQE-------AA---RDMRYRLF----QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLA 222 (704)
Q Consensus 163 ~~~-~-----~~gniEe-------~A---R~~RY~~L----~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLa 222 (704)
... . ....+++ .. =..|..+| ..+|...|++.|++|.|.+|-.
T Consensus 65 ~~~~~s~L~~~~~~v~~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D~~----------------- 127 (209)
T PF06508_consen 65 KEIGGSALTDDSIEVPEEEYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAEDAS----------------- 127 (209)
T ss_dssp HHCSCHHHHHTT------------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-STT-----------------
T ss_pred HhhCCCcccCCCcCCcccccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCccC-----------------
Confidence 210 0 0001111 11 12344443 3578889999999999998832
Q ss_pred cccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCC
Q 005288 223 GMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPT 277 (704)
Q Consensus 223 Gm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpS 277 (704)
+.|+.+.-|...++..........++|.-||++++|.||.+.+.++|+||-.--|
T Consensus 128 ~ypDc~~~F~~~~~~~~~~~~~~~v~i~~P~~~~tK~eiv~~~~~lg~~~~~T~S 182 (209)
T PF06508_consen 128 GYPDCRPEFIDAMNRLLNLGEGGPVRIETPLIDLTKAEIVKLGVELGVPLELTWS 182 (209)
T ss_dssp --GGGSHHHHHHHHHHHHHHHTS--EEE-TTTT--HHHHHHHHHHTTHHHHH-B-
T ss_pred CCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCHHHHHHHHHHcCCCHHHccC
Confidence 1122211111111000011234568999999999999999999999987754333
No 44
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.49 E-value=2e-13 Score=141.17 Aligned_cols=160 Identities=16% Similarity=0.130 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHH
Q 005288 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143 (704)
Q Consensus 64 ~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V 143 (704)
+.+...+++.+... ..++|+||+|||+||+++++++.++.. ..++++++++++. .+..|.+.+
T Consensus 8 ~~l~~~l~~~~~~~---~~~~vvv~lSGGiDSs~~a~la~~~~~------------~~~v~~~~~~~~~--~~~~~~~~a 70 (248)
T cd00553 8 NALVLFLRDYLRKS---GFKGVVLGLSGGIDSALVAALAVRALG------------RENVLALFMPSRY--SSEETREDA 70 (248)
T ss_pred HHHHHHHHHHHHHh---CCCCEEEeCCCcHHHHHHHHHHHHHhC------------cccEEEEECCCCC--CCHHHHHHH
Confidence 44445556666553 246799999999999999999987531 1368999999986 356788999
Q ss_pred HHHHHhcCCeEEEEEccccCCC----------CC--CCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHH
Q 005288 144 SHRVSDMGIRCEIVRCDWLDGR----------PK--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILR 211 (704)
Q Consensus 144 ~kl~~~LGIp~~Iv~~~~~~~~----------~~--~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~Lmr 211 (704)
+++|+.+|+++++++++..... +. ....+..+.++|...+..+|.++|+.+|.||| ..|+++
T Consensus 71 ~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn----~~E~~~-- 144 (248)
T cd00553 71 KELAEALGIEHVNIDIDPAVEAFLALLGESGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGN----KSELLL-- 144 (248)
T ss_pred HHHHHHhCCeEEEeccHHHHHHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCc----HhHHHh--
Confidence 9999999999999887542210 00 00135556678999999999999998888877 556653
Q ss_pred HhccCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005288 212 LSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (704)
Q Consensus 212 L~RGsGl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (704)
|.. ... . .+...++||.+++|.||+++++.+|+|.
T Consensus 145 -----G~~---t~~-----------------g-d~~~~i~Pl~~l~K~eV~~la~~~~ip~ 179 (248)
T cd00553 145 -----GYF---TKY-----------------G-DGAADINPIGDLYKTQVRELARYLGVPE 179 (248)
T ss_pred -----CCe---ecc-----------------C-CcccCccccCCCcHHHHHHHHHHHCchH
Confidence 110 000 0 1124789999999999999999999985
No 45
>PLN00200 argininosuccinate synthase; Provisional
Probab=99.49 E-value=1.8e-13 Score=150.89 Aligned_cols=150 Identities=14% Similarity=0.157 Sum_probs=112.4
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCe-EEEEEccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR-CEIVRCDW 161 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp-~~Iv~~~~ 161 (704)
+||+||+|||+||+++++++++. ++.+++++|+|.|.+ .+|.+.+++.|+++|++ ++++++..
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~-------------~G~eViav~id~Gq~---~~el~~a~~~A~~lGi~~~~v~dl~~ 69 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLREN-------------YGCEVVCFTADVGQG---IEELEGLEAKAKASGAKQLVVKDLRE 69 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHh-------------hCCeEEEEEEECCCC---hHHHHHHHHHHHHcCCCEEEEEeCHH
Confidence 69999999999999999998652 123799999999973 45788899999999997 57777653
Q ss_pred cCC----CC-CCCC-------h--HHHHHHHHHHHHHHHHHHcCCCEeeccccc--chhHHHHHHHHhccCCCCCccccc
Q 005288 162 LDG----RP-KQGH-------L--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGMA 225 (704)
Q Consensus 162 ~~~----~~-~~gn-------i--Ee~AR~~RY~~L~~~A~e~G~~~LatGHha--DDqaET~LmrL~RGsGl~GLaGm~ 225 (704)
.+. .+ ...| + -..+|.+.+..+.++|++.|+++|+.||+. +||..--. |+..+.
T Consensus 70 ef~~~~i~p~i~~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgkGnDq~rf~~----------~~~al~ 139 (404)
T PLN00200 70 EFVRDYIFPCLRANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGKGNDQVRFEL----------TFFALN 139 (404)
T ss_pred HHHHhhcCHHHHcCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCCCCcHHHHHH----------HHHHhC
Confidence 321 11 0001 1 134678888999999999999999999999 99986211 222222
Q ss_pred ccccccccccccccccccCCCeEEEeeCCCCC---HHHHHHHHHhCCCceeeCCC
Q 005288 226 FSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS---KDDMYKICQGGNRDWVEDPT 277 (704)
Q Consensus 226 ~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~ls---K~EIr~y~~~~gLp~veDpS 277 (704)
+ .+.++-|+.++. |+|+++|++++|||....|.
T Consensus 140 p-------------------el~ViaPlre~~~~~r~e~~~~A~~~Gipv~~~~~ 175 (404)
T PLN00200 140 P-------------------ELKVVAPWREWDIKGREDLIEYAKKHNIPVPVTKK 175 (404)
T ss_pred C-------------------CCeeeCchhhcCCCCHHHHHHHHHHcCCCCCCCCC
Confidence 1 235899999854 99999999999999776654
No 46
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=99.49 E-value=1.2e-12 Score=139.17 Aligned_cols=173 Identities=17% Similarity=0.081 Sum_probs=117.3
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccC
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~ 163 (704)
+.++++|||+||+||++|+.++...+ ...+.++|||+|. +-.+-.+++.++++++|+++++...+...
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~----------~~p~~vl~IDTG~--~F~Et~efrd~~a~~~gl~l~v~~~~~~~ 88 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPG----------PLPFPLLHVDTGW--KFREMIAFRDHMVAKYGLRLIVHSNEEGI 88 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhccc----------CCCeEEEEEecCC--CCHHHHHHHHHHHHHhCCCEEEEechhhh
Confidence 45789999999999999998763221 1257799999998 45667889999999999999998765321
Q ss_pred C--C-CCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHh--ccCCCCCcccccccccccccccccc
Q 005288 164 G--R-PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLS--RNSGVLGLAGMAFSSQIFSSYAYSC 238 (704)
Q Consensus 164 ~--~-~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~--RGsGl~GLaGm~~~~~vf~~~~~~~ 238 (704)
. . +-..+....|..++...|.+++.++|++++++||..||-....-+++. |..... -.+. +..+..|+.+
T Consensus 89 ~~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe~sRake~i~s~r~~~~~----wD~~-~q~Pelw~~~ 163 (294)
T TIGR02039 89 ADGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEEKSRAKERIFSFRNAFHQ----WDPK-KQRPELWNLY 163 (294)
T ss_pred hcCccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhhhHhhcCceeeccccccc----cCcc-ccCchhhhcc
Confidence 1 1 111234456777788899999999999999999999998755422221 111100 0000 0001111111
Q ss_pred cccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005288 239 HDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (704)
Q Consensus 239 ~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (704)
......+...-+.||++++..||..|+..+|||+.
T Consensus 164 ~~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~ 198 (294)
T TIGR02039 164 NGRISKGESVRVFPLSNWTELDIWRYIAAENIPIV 198 (294)
T ss_pred ccccccCCcEEEechhhCCHHHHHHHHHHcCCCCC
Confidence 11112234456789999999999999999999995
No 47
>PRK13980 NAD synthetase; Provisional
Probab=99.48 E-value=1.1e-12 Score=137.28 Aligned_cols=166 Identities=17% Similarity=0.214 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHH
Q 005288 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145 (704)
Q Consensus 66 ~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~k 145 (704)
+...+++.+.+.+ .++|+||+|||+||+++++++.+... ..+++++|++++.. +..|.+.+++
T Consensus 17 l~~~l~~~v~~~g---~~~vvv~lSGGiDSsv~a~l~~~~~~------------~~~v~av~~~~~~~--~~~~~~~a~~ 79 (265)
T PRK13980 17 IVDFIREEVEKAG---AKGVVLGLSGGIDSAVVAYLAVKALG------------KENVLALLMPSSVS--PPEDLEDAEL 79 (265)
T ss_pred HHHHHHHHHHHcC---CCcEEEECCCCHHHHHHHHHHHHHhC------------ccceEEEEeeCCCC--CHHHHHHHHH
Confidence 3344455555433 37899999999999999999976521 12689999999973 5678889999
Q ss_pred HHHhcCCeEEEEEccccCC-----CCC--CCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCC
Q 005288 146 RVSDMGIRCEIVRCDWLDG-----RPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGV 218 (704)
Q Consensus 146 l~~~LGIp~~Iv~~~~~~~-----~~~--~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl 218 (704)
+|+.+|+++++++++.... .+. ....+..+.++|+..+..+|+++|+.+|.||.. .|..+ |-+
T Consensus 80 la~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~n~~aR~R~~~L~~~A~~~g~lvlgTgn~----sE~~~-----G~~- 149 (265)
T PRK13980 80 VAEDLGIEYKVIEITPIVDAFFSAIPDADRLRVGNIMARTRMVLLYDYANRENRLVLGTGNK----SELLL-----GYF- 149 (265)
T ss_pred HHHHhCCCeEEEECHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCH----hHHHh-----CCc-
Confidence 9999999999998754210 011 113467788999999999999999877777633 33322 111
Q ss_pred CCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc--eeeCCCCCC
Q 005288 219 LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD--WVEDPTNRS 280 (704)
Q Consensus 219 ~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp--~veDpSN~d 280 (704)
.+. .+. ...+.||.+++|.||+++++.+|+| +++.|...+
T Consensus 150 ----t~~-----------------gD~-~~~l~Pl~~l~K~eV~~la~~lgip~~i~~k~psa~ 191 (265)
T PRK13980 150 ----TKY-----------------GDG-AVDLNPIGDLYKTQVRELARHLGVPEDIIEKPPSAD 191 (265)
T ss_pred ----cCC-----------------CCc-ccCcccCCCCcHHHHHHHHHHHCchHHHhCCCCCcC
Confidence 110 011 1248999999999999999999999 566665554
No 48
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=99.48 E-value=3.9e-13 Score=147.62 Aligned_cols=146 Identities=18% Similarity=0.227 Sum_probs=109.6
Q ss_pred EEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCe-EEEEEccccC
Q 005288 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR-CEIVRCDWLD 163 (704)
Q Consensus 85 VlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp-~~Iv~~~~~~ 163 (704)
|+||+|||+||+++++++++. + ..+++|+|+|+|.+. ++.+.+++.|+++|++ +++++++..+
T Consensus 1 Vvva~SGGlDSsvll~~l~e~---~----------~~eV~av~~d~Gq~~---~~~e~a~~~a~~lG~~~~~viD~~~ef 64 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEK---G----------GYEVIAVTADVGQPE---EEIEAIEEKALKLGAKKHVVVDLREEF 64 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHh---C----------CCeEEEEEEECCCcc---hhHHHHHHHHHHcCCCEEEEeccHHHH
Confidence 689999999999999998653 1 137999999999742 2347899999999995 8888876422
Q ss_pred CC----C-------CCC---ChHHHHHHHHHHHHHHHHHHcCCCEeeccccc--chhHHHHHHHHhccCCCCCccccccc
Q 005288 164 GR----P-------KQG---HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGMAFS 227 (704)
Q Consensus 164 ~~----~-------~~g---niEe~AR~~RY~~L~~~A~e~G~~~LatGHha--DDqaET~LmrL~RGsGl~GLaGm~~~ 227 (704)
.. + ..+ .....||.+.+..+.++|++.|+++|++||+. +||.. + -. ++..+.
T Consensus 65 ~~~~i~~~i~an~~~~g~y~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~~gnDq~r-f----~~-----~~~al~-- 132 (385)
T cd01999 65 VEDYIFPAIQANALYEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTGKGNDQVR-F----EL-----AFYALN-- 132 (385)
T ss_pred HHHhhHHHHHhCccccCCCcCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCcHHH-H----HH-----HHHhhC--
Confidence 10 0 011 23456898888999999999999999999997 48873 1 11 111111
Q ss_pred ccccccccccccccccCCCeEEEeeCCCC---CHHHHHHHHHhCCCceeeC
Q 005288 228 SQIFSSYAYSCHDDLKNHSILLVRPLLDF---SKDDMYKICQGGNRDWVED 275 (704)
Q Consensus 228 ~~vf~~~~~~~~~~~~~~~i~IIRPLL~l---sK~EIr~y~~~~gLp~veD 275 (704)
..+.++.|++++ +|+|+++|++++|||+...
T Consensus 133 -----------------pel~ViaPlre~~~~sr~ev~~~A~~~Gip~~~~ 166 (385)
T cd01999 133 -----------------PDLKIIAPWRDWEFLSREEEIEYAEEHGIPVPVT 166 (385)
T ss_pred -----------------CCCEEEcchhhhhcCCHHHHHHHHHHcCCCCccc
Confidence 235799999998 9999999999999998654
No 49
>PRK08576 hypothetical protein; Provisional
Probab=99.45 E-value=8.3e-13 Score=146.92 Aligned_cols=151 Identities=17% Similarity=0.133 Sum_probs=108.6
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~ 162 (704)
.+|+||+|||+||++|++++.+.. .++.++|+|+|. +.++..+.++++|+.+||++++.+.+..
T Consensus 235 ~rVvVafSGGKDStvLL~La~k~~--------------~~V~aV~iDTG~--e~pet~e~~~~lae~LGI~lii~~v~~~ 298 (438)
T PRK08576 235 WTVIVPWSGGKDSTAALLLAKKAF--------------GDVTAVYVDTGY--EMPLTDEYVEKVAEKLGVDLIRAGVDVP 298 (438)
T ss_pred CCEEEEEcChHHHHHHHHHHHHhC--------------CCCEEEEeCCCC--CChHHHHHHHHHHHHcCCCEEEcccCHH
Confidence 489999999999999999987641 137899999997 4566788899999999999988333211
Q ss_pred CCC---CCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccccccccccccc
Q 005288 163 DGR---PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239 (704)
Q Consensus 163 ~~~---~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~ 239 (704)
... ......+..|...+++.|.++++++|++++++||. +|+..+ |.. .++...
T Consensus 299 ~~~~~~g~p~~~~rcCt~lK~~pL~raake~g~~~iatG~R-~dES~~------R~~-------~p~v~~---------- 354 (438)
T PRK08576 299 MPIEKYGMPTHSNRWCTKLKVEALEEAIRELEDGLLVVGDR-DGESAR------RRL-------RPPVVE---------- 354 (438)
T ss_pred HHhhhcCCCCcccchhhHHHHHHHHHHHHhCCCCEEEEEee-HHHhHH------hhc-------CCcccc----------
Confidence 100 01112345678889999999999999999999985 554332 110 111100
Q ss_pred ccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005288 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (704)
Q Consensus 240 ~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (704)
.....+++..++||..++.+||..|+..+|||+-
T Consensus 355 ~~~~~~~v~rI~PL~~Wte~DV~~YI~~~gLP~n 388 (438)
T PRK08576 355 RKTNFGKILVVMPIKFWSGAMVQLYILMNGLELN 388 (438)
T ss_pred cccCCCCeEEEeChhhCCHHHHHHHHHHhCCCCC
Confidence 0001135779999999999999999999999983
No 50
>PRK04527 argininosuccinate synthase; Provisional
Probab=99.44 E-value=2.7e-13 Score=149.05 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=113.3
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCC-eEEEEEcc
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCD 160 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGI-p~~Iv~~~ 160 (704)
.++|+||+|||+||+++++++++. | .+++|+|+|.|.+. .+|.+.+++.|+++|+ ++++++++
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e~---G-----------~~Viavt~d~gq~~--~~El~~a~~~A~~lG~~~~~viD~~ 65 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQER---G-----------YAVHTVFADTGGVD--AEERDFIEKRAAELGAASHVTVDGG 65 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHHc---C-----------CcEEEEEEEeCCCC--HHHHHHHHHHHHHcCCCeEEEecCH
Confidence 368999999999999999998652 3 27999999999864 5688899999999998 69999887
Q ss_pred ccCCC----------C----CCCChHHHHHHHHHHHHHHHHHHcCCCEeecccc--cchhHHHHHHHHhccCCCCCcccc
Q 005288 161 WLDGR----------P----KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH--ADDQAELFILRLSRNSGVLGLAGM 224 (704)
Q Consensus 161 ~~~~~----------~----~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHh--aDDqaET~LmrL~RGsGl~GLaGm 224 (704)
..+.. . ...+++ ..|.+.+..+.++|+++|+++|++|++ .|||..-- .|+...
T Consensus 66 eef~e~vi~p~i~aNa~y~G~yPl~~-~nR~~~~~~l~e~A~~~G~~~IA~G~tgkgnDq~rfr----------pg~~Al 134 (400)
T PRK04527 66 PAIWEGFVKPLVWAGEGYQGQYPLLV-SDRYLIVDAALKRAEELGTRIIAHGCTGMGNDQVRFD----------LAVKAL 134 (400)
T ss_pred HHHHHHHHHHHHhcchhhcCCCCCcc-ccHHHHHHHHHHHHHHCCCCEEEecCcCCCCchhhcc----------HHHHHh
Confidence 53311 0 011233 278888889999999999999999999 89998621 122211
Q ss_pred cccccccccccccccccccCCCeEEEeeCCCC------CHHHHHHHHHhCCCceeeCCC
Q 005288 225 AFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF------SKDDMYKICQGGNRDWVEDPT 277 (704)
Q Consensus 225 ~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~l------sK~EIr~y~~~~gLp~veDpS 277 (704)
. .+.++-||+++ .|+|..+||+++|||.-.++.
T Consensus 135 ~--------------------el~ViaPlre~~~~k~~~R~~~i~ya~~~gipv~~~~~ 173 (400)
T PRK04527 135 G--------------------DYQIVAPIREIQKEHTQTRAYEQKYLEERGFGVRAKQK 173 (400)
T ss_pred h--------------------cCCccchHHHhcCcccccHHHHHHHHHHcCCCCCCCCC
Confidence 1 23488899874 688889999999999854443
No 51
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=99.43 E-value=3.5e-13 Score=128.52 Aligned_cols=106 Identities=21% Similarity=0.244 Sum_probs=84.1
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccC
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~ 163 (704)
.++|++|||+||+++++++.+.. ..++.++|+|||++ ++++.+.++++|+. |+++..+.+++..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~-------------~~~v~~v~~~~g~~--~~~~~~~~~~~a~~-g~~~~~~~~~~~~ 66 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKY-------------GLNPLAVTVDNGFN--SEEAVKNIKNLIKK-GLDLDHLVINPEE 66 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHh-------------CCceEEEEeCCCCC--CHHHHHHHHHHHHh-CCCeEEEecCHHH
Confidence 58999999999999999986531 12578999999996 45678889999999 8887766655432
Q ss_pred CC--------CCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhH
Q 005288 164 GR--------PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (704)
Q Consensus 164 ~~--------~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqa 205 (704)
.. ...++++..|+..|+.++.++|++.|+++|++|||+|+..
T Consensus 67 ~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~A~~~g~~~il~G~~~de~~ 116 (154)
T cd01996 67 MKDLQLARFKAKVGDPCWPCDTAIFTSLYKVALKFGIPLIITGENPAQEF 116 (154)
T ss_pred HHHHHHHHHhcccCCCChhhhHHHHHHHHHHHHHhCcCEEEeCcCHHHhc
Confidence 10 0133567778999999999999999999999999999864
No 52
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=99.36 E-value=4.1e-12 Score=129.51 Aligned_cols=159 Identities=16% Similarity=0.198 Sum_probs=111.4
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~ 162 (704)
++.+|-+|||.||+++++++++ .+ .+++++++|||+|. ..|.+.++++++++||+++++++++.
T Consensus 3 ~kavvl~SGG~DStt~l~~a~~---~~-----------~ev~alsfdYGQrh--~~Ele~A~~iak~lgv~~~iid~~~~ 66 (222)
T COG0603 3 KKAVVLLSGGLDSTTCLAWAKK---EG-----------YEVHALTFDYGQRH--RKELEAAKELAKKLGVPHHIIDVDLL 66 (222)
T ss_pred ceEEEEccCChhHHHHHHHHHh---cC-----------CEEEEEEeeCCCCc--HHHHHHHHHHHHHcCCCeEEechhHH
Confidence 6899999999999999998754 22 37999999999996 77999999999999999999998875
Q ss_pred CCC---CCC--------CCh-HHHHH----HHHHHH----HHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCcc
Q 005288 163 DGR---PKQ--------GHL-QEAAR----DMRYRL----FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLA 222 (704)
Q Consensus 163 ~~~---~~~--------gni-Ee~AR----~~RY~~----L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLa 222 (704)
... ... ... ++..+ ..|..+ -..+|..+|++.|++|-|..|- +
T Consensus 67 ~~~~~saLtd~~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D~-----------------s 129 (222)
T COG0603 67 GEIGGSALTDDSIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEEDF-----------------S 129 (222)
T ss_pred hhcCCCcCcCCCccccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEeccccc-----------------C
Confidence 411 110 010 11000 223333 3457888999999999999883 2
Q ss_pred cccccccccccccccccccccCCCeE-EEeeCCCCCHHHHHHHHHhCCCceee
Q 005288 223 GMAFSSQIFSSYAYSCHDDLKNHSIL-LVRPLLDFSKDDMYKICQGGNRDWVE 274 (704)
Q Consensus 223 Gm~~~~~vf~~~~~~~~~~~~~~~i~-IIRPLL~lsK~EIr~y~~~~gLp~ve 274 (704)
|.|..++.|....+...+.....++. +.-||.+++|.||.+.+.++|.|+-.
T Consensus 130 gYPDcrpefi~a~~~~~~l~~~~~~~~i~aPl~~l~Ka~iv~l~~elg~~~~~ 182 (222)
T COG0603 130 GYPDCRPEFIEALNEALNLGTEKGVRIIHAPLMELTKAEIVKLADELGVPLEL 182 (222)
T ss_pred CCCCCCHHHHHHHHHHHHhhccCCccEEeCCeeeccHHHHHHHHHHhCCcchh
Confidence 23444433332222222223344555 58999999999999999999987643
No 53
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=99.36 E-value=1.8e-11 Score=126.49 Aligned_cols=145 Identities=14% Similarity=0.166 Sum_probs=110.1
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~ 162 (704)
++|+|++|||+||+||++|+.+. + .++.++++|+|. +.++-.++++++++++|++++++..+..
T Consensus 41 ~~i~vs~SGGKDS~vlL~L~~~~---~-----------~~i~vvfiDTG~--~~pet~e~~~~~~~~~gl~l~v~~~~~~ 104 (241)
T PRK02090 41 GRLALVSSFGAEDAVLLHLVAQV---D-----------PDIPVIFLDTGY--LFPETYRFIDELTERLLLNLKVYRPDAS 104 (241)
T ss_pred CCEEEEecCCHHHHHHHHHHHhc---C-----------CCCcEEEecCCC--CCHHHHHHHHHHHHHhCCCEEEECCCcc
Confidence 56999999999999999999763 1 256799999998 7788889999999999999999876532
Q ss_pred CC-------CCCC---CChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCcccccccccccc
Q 005288 163 DG-------RPKQ---GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS 232 (704)
Q Consensus 163 ~~-------~~~~---gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~ 232 (704)
.. .... .+.+..|...+..-|.++++++++ +++||..||-.. |. .++..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~--~itG~R~~es~~-------R~-------~~~~~----- 163 (241)
T PRK02090 105 AAEQEARYGGLWEQSVEDRDECCRIRKVEPLNRALAGLDA--WITGLRREQSGT-------RA-------NLPVL----- 163 (241)
T ss_pred HHHHHHHcCCCccccccCHHHHHHHHhhHHHHHHHhcCCC--eEEEechhhCch-------hc-------cCcee-----
Confidence 10 0011 245677888888999999998876 889999887321 11 01110
Q ss_pred cccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005288 233 SYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (704)
Q Consensus 233 ~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (704)
..+.++.-+.||++++.+||.+|+..+|||+.
T Consensus 164 ---------~~~~~~~rv~Pi~~Wt~~dV~~Yi~~~~lp~~ 195 (241)
T PRK02090 164 ---------EIDGGRFKINPLADWTNEDVWAYLKEHDLPYH 195 (241)
T ss_pred ---------eecCCeEEEeehhhCCHHHHHHHHHHcCCCCC
Confidence 01125678999999999999999999999983
No 54
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=99.33 E-value=7.3e-12 Score=126.27 Aligned_cols=149 Identities=17% Similarity=0.273 Sum_probs=93.6
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeC-CC-CCCcHHHHHHHHHHHHhcC----CeEE
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH-GL-REESKEEANIVSHRVSDMG----IRCE 155 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDH-GL-R~eS~~Eae~V~kl~~~LG----Ip~~ 155 (704)
..|+++.+|||.||.++++++.+ +| .++.++|++. .. .+...+.++.+.+....++ ++++
T Consensus 3 ~gk~l~LlSGGiDSpVAa~lm~k---rG-----------~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~ 68 (197)
T PF02568_consen 3 QGKALALLSGGIDSPVAAWLMMK---RG-----------CEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLY 68 (197)
T ss_dssp T-EEEEE-SSCCHHHHHHHHHHC---BT------------EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEE
T ss_pred CceEEEEecCCccHHHHHHHHHH---CC-----------CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEE
Confidence 47899999999999999999864 33 3899999992 22 2334444555555555544 5777
Q ss_pred EEEccccCC----CCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccccc
Q 005288 156 IVRCDWLDG----RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231 (704)
Q Consensus 156 Iv~~~~~~~----~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf 231 (704)
++++..... .....+++-.||++.|+.-.++|++.|++.|+||..+..++...+-+ |..+...
T Consensus 69 ~v~~~~~~~~i~~~~~~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQvaSQTl~n---------L~~i~~~---- 135 (197)
T PF02568_consen 69 VVDFTEVQKEILRGVKERNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQVASQTLEN---------LRVIESA---- 135 (197)
T ss_dssp EECHHHHHHHHHHHS-GGGHHHHHHHHHHHHHHHHHHHTT--EEE----SSSTTS--HHH---------HHHHGGG----
T ss_pred EECcHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHHHhhhHHH---------Hhhhhcc----
Confidence 776543211 11234678889999999999999999999999999998876544322 2222211
Q ss_pred ccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCC
Q 005288 232 SSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNR 270 (704)
Q Consensus 232 ~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gL 270 (704)
.+..|+|||+.++|+||.+++++.|.
T Consensus 136 -------------~~~pIlRPLig~dK~EIi~~Ar~Igt 161 (197)
T PF02568_consen 136 -------------SDLPILRPLIGFDKEEIIEIARKIGT 161 (197)
T ss_dssp ---------------S-EE-TTTT--HHHHHHHHHHTT-
T ss_pred -------------cCCceeCCcCCCCHHHHHHHHHHhCc
Confidence 14569999999999999999999995
No 55
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=99.31 E-value=8.9e-12 Score=135.10 Aligned_cols=142 Identities=15% Similarity=0.170 Sum_probs=103.3
Q ss_pred hhhccccCCcCCccCCHHHHHHHHHHHHHHcCCCCC--CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEE
Q 005288 47 LFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPH--HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLL 124 (704)
Q Consensus 47 ~~c~~~~~w~~~~~~~~~~~~e~f~~~i~~~~l~~~--~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~ 124 (704)
.+|..=.+|.-...+++++-.+++.+.+....-..+ -.++||||||+||+++++++++. .| .++.
T Consensus 22 GvC~~C~~~~~~~~~~~~~~~~~l~~l~~~~k~~~~~~yD~iV~lSGGkDSs~la~ll~~~--~g-----------l~~l 88 (343)
T TIGR03573 22 GVCSACRNFEEKSKIDWDEREKELEELVDKIKKKGGGRYDCIIGVSGGKDSTYQAHVLKKK--LG-----------LNPL 88 (343)
T ss_pred CCchhhhhHHhhcCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHHH--hC-----------CceE
Confidence 455443334333445555555556555544221111 45999999999999999888542 12 2678
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccCCC-------CCCCChHHHHHHHHHHHHHHHHHHcCCCEeec
Q 005288 125 AITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGR-------PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197 (704)
Q Consensus 125 AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~~-------~~~gniEe~AR~~RY~~L~~~A~e~G~~~Lat 197 (704)
++|+|+|+. ++.+.+.++++++++|++++++..++.... ...++++..|...++..+.++|+++|+.+|++
T Consensus 89 ~vt~~~~~~--~e~~~~n~~~~~~~lgvd~~~i~~d~~~~~~l~~~~~~~~~~pc~~c~~~~~~~l~~~A~~~gi~~Il~ 166 (343)
T TIGR03573 89 LVTVDPGWN--TELGVKNLNNLIKKLGFDLHTITINPETFRKLQRAYFKKVGDPEWPQDHAIFASVYQVALKFNIPLIIW 166 (343)
T ss_pred EEEECCCCC--CHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHHhCCCEEEe
Confidence 999999994 566778899999999999999988754321 12346778888999999999999999999999
Q ss_pred ccccch
Q 005288 198 AHHADD 203 (704)
Q Consensus 198 GHhaDD 203 (704)
|||+|.
T Consensus 167 G~~~dE 172 (343)
T TIGR03573 167 GENIAE 172 (343)
T ss_pred CCCHHH
Confidence 999993
No 56
>PTZ00323 NAD+ synthase; Provisional
Probab=99.31 E-value=2.3e-11 Score=129.48 Aligned_cols=187 Identities=14% Similarity=0.074 Sum_probs=116.3
Q ss_pred ccccCCcCCccCCHHHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEe
Q 005288 50 KCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD 129 (704)
Q Consensus 50 ~~~~~w~~~~~~~~~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVD 129 (704)
+.+++|+ +.-.+++..+.+++.+... ..++++||+|||+||++++.++.+...... . ....++.+.
T Consensus 19 ~~~~~~~--~~~~i~~~~~~L~~~l~~~---g~~~vVVglSGGVDSav~aaLa~~alg~~~--------~-~~~~~~~v~ 84 (294)
T PTZ00323 19 RRKRAFN--PAAWIEKKCAKLNEYMRRC---GLKGCVTSVSGGIDSAVVLALCARAMRMPN--------S-PIQKNVGLC 84 (294)
T ss_pred CCCCCCC--HHHHHHHHHHHHHHHHHHc---CCCcEEEECCCCHHHHHHHHHHHHHhcccc--------C-CceEEEEEE
Confidence 4455555 3333344444445555442 347899999999999999999987643210 0 012334444
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccCCC-----------C----CCCChHHHHHHHHHHHHHHHHHHcCCCE
Q 005288 130 HGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGR-----------P----KQGHLQEAARDMRYRLFQKVCIQHQIGV 194 (704)
Q Consensus 130 HGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~~-----------~----~~gniEe~AR~~RY~~L~~~A~e~G~~~ 194 (704)
-.. ..++.+.+.++++|+.+||++++++++..... . ..++.+...|...--.+.+.+.+.|.+.
T Consensus 85 ~P~-~ss~~~~~~A~~la~~lGi~~~~idi~~l~~~~~~~i~~~~~~~~~~~~~~n~~ar~R~~~lY~la~~~~~~g~~~ 163 (294)
T PTZ00323 85 QPI-HSSAWALNRGRENIQACGATEVTVDQTEIHTQLSSLVEKAVGIKGGAFARGQLRSYMRTPVAFYVAQLLSQEGTPA 163 (294)
T ss_pred CCC-CCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHhhhhcccchhhHHHhHHHHHHhHHHHHHHHHHhhcCCCe
Confidence 433 24778999999999999999999988753300 0 0112222233222222455566788999
Q ss_pred eeccc-ccchhHHHHHHHHhccCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc--
Q 005288 195 LLIAH-HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD-- 271 (704)
Q Consensus 195 LatGH-haDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp-- 271 (704)
|+.|+ |+||.... | ...+. ..++.=+-|+.+++|.||+++++..|+|
T Consensus 164 lV~GT~N~sE~~~~---------G---y~t~~------------------GDg~~d~~pia~L~K~eVr~LAr~l~lp~~ 213 (294)
T PTZ00323 164 VVMGTGNFDEDGYL---------G---YFCKA------------------GDGVVDVQLISDLHKSEVFLVARELGVPEN 213 (294)
T ss_pred EEECCCCchhhhHh---------c---hHhhc------------------CCCCcCchhhcCCcHHHHHHHHHHcCCCHH
Confidence 99999 99995332 1 11111 0112235688999999999999999999
Q ss_pred eeeCCCCCCC
Q 005288 272 WVEDPTNRSP 281 (704)
Q Consensus 272 ~veDpSN~d~ 281 (704)
.++-|...+.
T Consensus 214 i~~kppSA~L 223 (294)
T PTZ00323 214 TLQAAPSADL 223 (294)
T ss_pred HhcCCCCcCc
Confidence 7777766653
No 57
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.8e-11 Score=128.76 Aligned_cols=177 Identities=15% Similarity=0.132 Sum_probs=116.2
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEe-------CCCCCCcHHHHHHHHHHHHhcCCe
Q 005288 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD-------HGLREESKEEANIVSHRVSDMGIR 153 (704)
Q Consensus 81 ~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVD-------HGLR~eS~~Eae~V~kl~~~LGIp 153 (704)
..++|+||+||||||.|.|+||+. +|+ ++++|+.- +|-+.-.+.|.+.|+..|++++||
T Consensus 4 ~~~~VvvamSgGVDSsVaa~Ll~~---~g~-----------~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~ 69 (377)
T KOG2805|consen 4 KPDRVVVAMSGGVDSSVAARLLAA---RGY-----------NVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIP 69 (377)
T ss_pred ccceEEEEecCCchHHHHHHHHHh---cCC-----------CeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCe
Confidence 357999999999999999999964 332 67888852 343445567888999999999999
Q ss_pred EEEEEccccC-----------CCC-CCCChHHHH-HHHHHH-HHHHHHHHcCCCEeecccccchhHHHHH---HHHhccC
Q 005288 154 CEIVRCDWLD-----------GRP-KQGHLQEAA-RDMRYR-LFQKVCIQHQIGVLLIAHHADDQAELFI---LRLSRNS 216 (704)
Q Consensus 154 ~~Iv~~~~~~-----------~~~-~~gniEe~A-R~~RY~-~L~~~A~e~G~~~LatGHhaDDqaET~L---mrL~RGs 216 (704)
++.++...+. +.. .+.|+.-.| |.+++. ++...-.+.|+++|++||.+.-..|... .+|..+.
T Consensus 70 ~~~Vnf~kEYW~~Vfs~~L~~Y~~G~TPNPDI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~~~~~~l~~~~ 149 (377)
T KOG2805|consen 70 LHQVNFVKEYWNDVFSPFLEEYENGRTPNPDILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDEDNAESHLLISK 149 (377)
T ss_pred eEEEeeHHHHHHHHHHHHHHHHhcCCCCCCCccccceeeccHHHHHHHHhcCCCeEEeeeeeeeecCcccCcceeEeecc
Confidence 9999875211 111 222554444 677888 5555566789999999999876554331 1111111
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCch
Q 005288 217 GVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLF 283 (704)
Q Consensus 217 Gl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y 283 (704)
-.. ++ ++.++.......--.++-||-.++|+|++++|++.|+|-.+.|..+-..|
T Consensus 150 d~~-----KD-------Qt~FL~~in~~~L~r~lfPlg~~~K~eVk~lA~~~gf~~aeK~eSqGICF 204 (377)
T KOG2805|consen 150 DMV-----KD-------QTYFLSTINQTQLKRLLFPLGCLTKSEVKKLAKQAGFPNAEKPESQGICF 204 (377)
T ss_pred ccc-----CC-------ceeEeecccHHHHHhhhccCcccCHHHHHHHHHhcCCccccCcccceeEE
Confidence 100 00 00111000011111367899999999999999999999888887766555
No 58
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=99.26 E-value=1.7e-10 Score=123.55 Aligned_cols=174 Identities=14% Similarity=0.064 Sum_probs=113.8
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~ 162 (704)
+++++++|||+||+||++|+.++...+ ...+-++|||+|. +-++-.+++.++++++|+++++......
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~----------~~~~pvl~VDTG~--~FpEt~efrD~~a~~~gl~Liv~~~~~~ 105 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPT----------RPPFPLLHVDTTW--KFREMIDFRDRRAKELGLDLVVHHNPDG 105 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhccc----------CCCeeEEEeCCCC--CCHHHHHHHHHHHHHhCCcEEEecChHH
Confidence 467899999999999999998763221 1246789999998 5677788999999999999988754322
Q ss_pred CCC---CCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHh--ccCCCCCccccccccccccccccc
Q 005288 163 DGR---PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLS--RNSGVLGLAGMAFSSQIFSSYAYS 237 (704)
Q Consensus 163 ~~~---~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~--RGsGl~GLaGm~~~~~vf~~~~~~ 237 (704)
... +-..+.+..|...+-+-|.++..++|++++++|+..||-....-+++. |... .+..+..+ .+..|+.
T Consensus 106 ~~~G~~~~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE~~sRak~~ifs~r~~~----~~wD~~~q-rPelw~~ 180 (312)
T PRK12563 106 IARGIVPFRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDEEKSRAKERIFSFRSAF----HRWDPKAQ-RPELWSL 180 (312)
T ss_pred HHhCCCcccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHHhhhhccCceecccccc----cccCcccc-Chhhhhh
Confidence 110 111134445555666889999999999999999999995533211111 0000 00000000 0011111
Q ss_pred ccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005288 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (704)
Q Consensus 238 ~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (704)
+......+...-+.||++++..||..|..+++||+.
T Consensus 181 ~n~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~ 216 (312)
T PRK12563 181 YNARLRRGESLRVFPLSNWTELDVWQYIAREKIPLV 216 (312)
T ss_pred ccccccCCceEEEecchhCCHHHHHHHHHHcCCCCC
Confidence 111112234567899999999999999999999994
No 59
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=99.16 E-value=3.1e-10 Score=117.81 Aligned_cols=159 Identities=16% Similarity=0.231 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHH
Q 005288 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143 (704)
Q Consensus 64 ~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V 143 (704)
+.+.+.++..+.+.+. ++++||+|||+||++++.|++++... .++++++++.+. .++++.+.+
T Consensus 3 ~~l~~~L~~~~~~~g~---~~vVvglSGGiDSav~A~La~~Alg~------------~~v~~v~mp~~~--~~~~~~~~A 65 (242)
T PF02540_consen 3 EALVDFLRDYVKKSGA---KGVVVGLSGGIDSAVVAALAVKALGP------------DNVLAVIMPSGF--SSEEDIEDA 65 (242)
T ss_dssp HHHHHHHHHHHHHHTT---SEEEEEETSSHHHHHHHHHHHHHHGG------------GEEEEEEEESST--STHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---CeEEEEcCCCCCHHHHHHHHHHHhhh------------cccccccccccc--CChHHHHHH
Confidence 4556666777766433 78999999999999999999886421 378999999776 568888999
Q ss_pred HHHHHhcCCeEEEEEccccCCCCCCC--------ChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhcc
Q 005288 144 SHRVSDMGIRCEIVRCDWLDGRPKQG--------HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRN 215 (704)
Q Consensus 144 ~kl~~~LGIp~~Iv~~~~~~~~~~~g--------niEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RG 215 (704)
+++|+++|+++.+++++.....-... ..+...-++|...+..+|...| ++++|+ ++..|..+
T Consensus 66 ~~la~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~Ni~aR~Rm~~ly~~a~~~~--~lVlgT--~N~sE~~~------ 135 (242)
T PF02540_consen 66 KELAEKLGIEYIVIDIDPIFDAFLKSLEPADDDLARGNIQARIRMTTLYALANKYN--YLVLGT--GNKSELLL------ 135 (242)
T ss_dssp HHHHHHHTSEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--EEEBE----CHHHHHH------
T ss_pred HHHHHHhCCCeeccchHHHHHHHhhhhccchhhhhhhhHHHHHHHHHHHHHhcccc--eEEecC--CcHHHhhc------
Confidence 99999999999999876432100000 0112223567777888888875 566666 34455332
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc
Q 005288 216 SGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD 271 (704)
Q Consensus 216 sGl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp 271 (704)
|....- .++.. -+.||.+++|.||+++++.+|+|
T Consensus 136 -Gy~T~~--------------------GD~~~-d~~Pi~~L~K~eV~~la~~l~ip 169 (242)
T PF02540_consen 136 -GYFTKY--------------------GDGAG-DIAPIADLYKTEVRELARYLGIP 169 (242)
T ss_dssp -TCSHTT--------------------TTTSS-SBETTTTS-HHHHHHHHHHTTCG
T ss_pred -Cccccc--------------------Ccccc-cceeeCCcCHHHHHHHHHHHhhH
Confidence 221100 11111 26899999999999999999966
No 60
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=99.13 E-value=1.4e-10 Score=100.42 Aligned_cols=69 Identities=29% Similarity=0.419 Sum_probs=60.4
Q ss_pred EEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccCC
Q 005288 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG 164 (704)
Q Consensus 85 VlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~ 164 (704)
|+|++|||+||+++++++.++++.+ .+++++|+|
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~~~-----------~~~~~~~~~----------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKSGG-----------PEVVALVVV----------------------------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHhcC-----------CCEEEEEeH-----------------------------------
Confidence 6899999999999999998764222 368889998
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHH
Q 005288 165 RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRL 212 (704)
Q Consensus 165 ~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL 212 (704)
.||+.+.+++++.|++.|++|||.+|+.|+.++++
T Consensus 35 -------------~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~ 69 (86)
T cd01984 35 -------------AFVRILKRLAAEEGADVIILGHNADDVAGRRLGAS 69 (86)
T ss_pred -------------HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCch
Confidence 89999999999999999999999999999987653
No 61
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=99.11 E-value=2.4e-10 Score=109.85 Aligned_cols=148 Identities=19% Similarity=0.257 Sum_probs=91.2
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccC
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~ 163 (704)
.|+|++|||+||+|+++|+.++.. ++.++|+|+|. +.++-.++++++.+.+|+++.+.......
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~--------------~~~vv~~dtg~--e~p~t~~~~~~~~~~~~~~i~~~~~~~~~ 64 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGR--------------KVPVVFIDTGY--EFPETYEFVDELAKRYGIPIIVYRPPETF 64 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHT--------------TCEEEEEE-ST--B-HHHHHHHHHHHHHTTCEEEEEETTSHH
T ss_pred CeEEEecCCHHHHHHHHHHHHhcC--------------CCcEEEEecCc--cCHHHHHHHHHHHhhhhhhhhhcccccch
Confidence 379999999999999999987632 23689999998 77888899999999999997777654321
Q ss_pred CCC------CCCChHH-HHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCcccccccccccccccc
Q 005288 164 GRP------KQGHLQE-AARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY 236 (704)
Q Consensus 164 ~~~------~~gniEe-~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~ 236 (704)
... .....+. .+..++-+-+.++.++++...+++|.-+|+-.. |.. +..+.. .
T Consensus 65 ~~~~~~~~~~~~~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es~~-------R~~----~~~~~~-~-------- 124 (174)
T PF01507_consen 65 EQRFILYGWPSKLWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADESPR-------RAK----LPMFEF-D-------- 124 (174)
T ss_dssp HHHHHHHHHSTTHHHHHHHHHHTHHHHHHHHHHTTESEEE----TTSTTG-------CCG----SSSEEE-E--------
T ss_pred hhccccccccchhhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhchhh-------hhh----chhhhc-c--------
Confidence 100 0011122 344555566888888999889999998887432 111 100110 0
Q ss_pred cccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005288 237 SCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (704)
Q Consensus 237 ~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (704)
.......-+.||.+++++||.+|.+.+|+|+
T Consensus 125 -----~~~~~~~~~~Pi~~wt~~dV~~yi~~~~l~~ 155 (174)
T PF01507_consen 125 -----EDNPKIIRVYPIADWTEEDVWDYIKANGLPY 155 (174)
T ss_dssp -----TTTTSEEEE-TTTT--HHHHHHHHHHHT--B
T ss_pred -----cccCCEEEEEehhhCCHHHHHHHHHHhcCCC
Confidence 0112245677999999999999999999987
No 62
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.04 E-value=4.6e-09 Score=105.70 Aligned_cols=143 Identities=11% Similarity=0.093 Sum_probs=106.6
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCc----HHHHHHHHHHHHhcCCeEEEEEc
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES----KEEANIVSHRVSDMGIRCEIVRC 159 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS----~~Eae~V~kl~~~LGIp~~Iv~~ 159 (704)
|+++++|||+||+++++++.+. | .++.+++++......+ ..+.+.++++|+.+|||+++++.
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~---G-----------~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~ 66 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE---G-----------HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEI 66 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHc---C-----------CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeC
Confidence 5899999999999999998752 2 3688888886553322 23667888999999999998876
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccccccccccccc
Q 005288 160 DWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239 (704)
Q Consensus 160 ~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~ 239 (704)
+. +.+.. ...-+..+.+++++ |++.|+.|.+++|.--+..-+++...
T Consensus 67 ~~--------~~e~~-~~~l~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~~~~~~----------------------- 113 (194)
T cd01994 67 SG--------EEEDE-VEDLKELLRKLKEE-GVDAVVFGAILSEYQRTRVERVCERL----------------------- 113 (194)
T ss_pred CC--------CchHH-HHHHHHHHHHHHHc-CCCEEEECccccHHHHHHHHHHHHHc-----------------------
Confidence 31 11222 24455677777777 99999999999997766666555544
Q ss_pred ccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCC
Q 005288 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNR 279 (704)
Q Consensus 240 ~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~ 279 (704)
++..+-||...+..++..-..+.|+..+.-..+.
T Consensus 114 ------gl~~~~PLW~~~~~~ll~e~~~~g~~~~iv~v~~ 147 (194)
T cd01994 114 ------GLEPLAPLWGRDQEELLREMIEAGFKAIIIKVAA 147 (194)
T ss_pred ------CCEEEecccCCCHHHHHHHHHHcCCeEEEEEecc
Confidence 3457899999999999888889998877655544
No 63
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=98.93 E-value=1.4e-08 Score=102.66 Aligned_cols=148 Identities=13% Similarity=0.140 Sum_probs=104.4
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~ 162 (704)
.++++++|||+||+||++|+.+.. .++.++++|+|. +-++-.+++.++.+.+|+++++...++.
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~~~~--------------~~~~v~f~DTg~--efpeT~efv~~~~~~~~l~i~~~~~~~~ 77 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVSKIS--------------PDIPVIFLDTGY--HFPETYELIDELTERYPLNIKVYKPDLS 77 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHHhcC--------------CCCcEEEecCCC--CCHHHHHHHHHHHHHhCCceEEECCchh
Confidence 469999999999999999997641 135688999998 6677788999999999998888765432
Q ss_pred CC------C-C-CCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCcccccccccccccc
Q 005288 163 DG------R-P-KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY 234 (704)
Q Consensus 163 ~~------~-~-~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~ 234 (704)
.. . . -..+....|+...-.-|.++.++++...+++|--+||-..- - . ++...
T Consensus 78 ~~~~~~~~g~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~i~GiR~~Es~~R-------~----~---~~~~~------ 137 (212)
T TIGR00434 78 LAEQAAKYGDKLWEQDPNKYDYLRKVEPMHRALKELHASAWFTGLRRDQGPSR-------A----N---LSILN------ 137 (212)
T ss_pred HHHHHHhcCCCccccChHHHhhHHhHHHHHHHHHhcCCcEEEEecccccCccc-------c----C---Cceee------
Confidence 11 0 0 01133445555566678888888877788889888874211 0 0 11000
Q ss_pred cccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005288 235 AYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (704)
Q Consensus 235 ~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (704)
.....+..-+.||++.+..||.+|..++||||
T Consensus 138 ------~~~~~~~~~v~PI~dWt~~dVw~Yi~~~~lp~ 169 (212)
T TIGR00434 138 ------IDEKFGILKVLPLIDWTWKDVYQYIDAHNLPY 169 (212)
T ss_pred ------ecCCCCcEEEeehhhCCHHHHHHHHHHcCCCC
Confidence 00112345689999999999999999999998
No 64
>KOG2594 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=1.5e-08 Score=108.69 Aligned_cols=196 Identities=14% Similarity=0.147 Sum_probs=121.7
Q ss_pred CCHHHHHHHHHHHHHH-------cCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCC
Q 005288 61 TDMTKYREAFSRRMAM-------AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133 (704)
Q Consensus 61 ~~~~~~~e~f~~~i~~-------~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR 133 (704)
.|-++|++.++..++. .+..+.+.+++++|||.-|+|||+.++.+..... .-.-+.++. -+++++.-.+-
T Consensus 34 ~C~eCFv~~v~~KfR~qla~~~~~~~~~sk~vLlv~~G~ssSlvlLd~vh~~l~q~k-~~~~~~~~t-v~v~~~~~~~~- 110 (396)
T KOG2594|consen 34 FCDECFVNNVRNKFRLQLAVPSHKMGTPSKNVLLVFDGGSSSLVLLDFVHLALKQLK-NKRLRRDFT-VLVLVVFQEFT- 110 (396)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhcCCcccceEEEecCCcchHhHHHHHHHHHHHhh-hhhcCcCCc-eEEEEEEEecc-
Confidence 3578888887777766 3467788999999999999999998773322210 000011111 12222222222
Q ss_pred CCcHHHHHHHHHHHHhc--CCeEEEE--EccccCC----C-CCCCC--------------------hHHHHHHHHHHHHH
Q 005288 134 EESKEEANIVSHRVSDM--GIRCEIV--RCDWLDG----R-PKQGH--------------------LQEAARDMRYRLFQ 184 (704)
Q Consensus 134 ~eS~~Eae~V~kl~~~L--GIp~~Iv--~~~~~~~----~-~~~gn--------------------iEe~AR~~RY~~L~ 184 (704)
++....+..+++-.+. .+++.|. ..+..+. . ...+| -++.-+.+|-..+.
T Consensus 111 -~~~~v~e~lq~l~~~~~~~~~~~V~~la~~~~~~~~~~~~~~~~n~El~ak~~kl~~~~sv~~~srqDLl~~lk~kll~ 189 (396)
T KOG2594|consen 111 -DSTAVFEALQELIIDNIEWVRYVVSCLAPPEKDNHVVPVESINGNDELIAKDRKLKLSDSVPDDSRQDLLLHLKMKLLQ 189 (396)
T ss_pred -chHHHHHHHHHHHHhhccccceEEEecCchHhhcCcccccccCCCceeecchhhcccccccccchHHHHHHHHHHHHHH
Confidence 3445555555544332 1223321 1111000 0 00011 24555678888999
Q ss_pred HHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHH
Q 005288 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264 (704)
Q Consensus 185 ~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y 264 (704)
++|.+.|++.|+.||+.+|.++-+|-.++.|.|.. ++..-.+. +-.-.+++.++|||.++.+.||..|
T Consensus 190 ~vA~~~g~~~i~~g~~~t~la~~vlt~v~~GRG~s-is~~v~~~-----------d~r~~~d~~llrPLrDl~~~Ei~~y 257 (396)
T KOG2594|consen 190 KVAAENGYNRIVLGDSTTDLASHVLTAVVKGRGGS-ISTDVQVV-----------DKRPKGDVKLLRPLRDLLSLEITSY 257 (396)
T ss_pred HHHHHcCCCEEEecCchhHHHHHHHHHHHhccCcc-ceehhhhh-----------ccccCCCceeehhHHHHHHHHHHHH
Confidence 99999999999999999999999998888887643 11111110 0011346899999999999999999
Q ss_pred HHhCCCce
Q 005288 265 CQGGNRDW 272 (704)
Q Consensus 265 ~~~~gLp~ 272 (704)
+...|++|
T Consensus 258 ~~l~~l~~ 265 (396)
T KOG2594|consen 258 CLLDGLAY 265 (396)
T ss_pred HHhhcCCc
Confidence 99999997
No 65
>PRK13794 hypothetical protein; Provisional
Probab=98.90 E-value=2.5e-08 Score=112.99 Aligned_cols=150 Identities=15% Similarity=0.173 Sum_probs=101.5
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc-
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCD- 160 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~- 160 (704)
+++++|++|||+||+|+|+|+.+.. + .++.++++|+|+ +.++..++++++++++|++++++..+
T Consensus 247 ~~~v~vs~SGGKDS~v~L~L~~~~~--~-----------~~~~vvfiDTG~--efpet~e~i~~~~~~~gl~i~~~~~~~ 311 (479)
T PRK13794 247 NKPVTVAYSGGKDSLATLLLALKAL--G-----------INFPVLFNDTGL--EFPETLENVEDVEKHYGLEIIRTKSEE 311 (479)
T ss_pred CCCEEEEecchHHHHHHHHHHHHHh--C-----------CCeEEEEEECCC--CChHHHHHHHHHHHhcCCcEEEEchHH
Confidence 4689999999999999999987652 1 257899999998 56778888999999999999887644
Q ss_pred -cc----CCCCCCCChHHHHHHHHHHHHHHHHHHc--CCCEeecccccchhHHHHHHHHhccCCCCCccccccccccccc
Q 005288 161 -WL----DGRPKQGHLQEAARDMRYRLFQKVCIQH--QIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSS 233 (704)
Q Consensus 161 -~~----~~~~~~gniEe~AR~~RY~~L~~~A~e~--G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~ 233 (704)
|. .+.|. .+...-|+...-.-+.++.++. +....++|--.++-.... . ++....
T Consensus 312 f~~~~~~~G~P~-~~~rwCc~~~K~~Pl~~~l~~~~~~~~~~~~G~R~~ES~~Ra-------~-------~~~~~~---- 372 (479)
T PRK13794 312 FWEKLEEYGPPA-RDNRWCSEVCKLEPLGKLIDEKYEGECLSFVGQRKYESFNRS-------K-------KPRIWR---- 372 (479)
T ss_pred HHHHHHhcCCCC-CcchhhhhHHHHHHHHHHHHhcCCCccEEEEEEEcCccHhHh-------c-------Cccccc----
Confidence 11 11111 1222334455555566666553 445678887777643211 0 010000
Q ss_pred ccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005288 234 YAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (704)
Q Consensus 234 ~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (704)
.....+...+.|+++++..||..|+..+++||
T Consensus 373 -------~~~~~~~~~~~PI~~Wt~~dVw~Yi~~~~lp~ 404 (479)
T PRK13794 373 -------NPYIKKQILAAPILHWTAMHVWIYLFREKAPY 404 (479)
T ss_pred -------ccCcCCcEEEechHhCCHHHHHHHHHHcCCCC
Confidence 00112334689999999999999999999998
No 66
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=98.87 E-value=3.6e-08 Score=100.85 Aligned_cols=140 Identities=13% Similarity=0.072 Sum_probs=98.0
Q ss_pred EEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEE-EEEEeCCCCC----CcHHHHHHHHHHHHhcCCeEEEEEcc
Q 005288 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLL-AITVDHGLRE----ESKEEANIVSHRVSDMGIRCEIVRCD 160 (704)
Q Consensus 86 lVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~-AVhVDHGLR~----eS~~Eae~V~kl~~~LGIp~~Iv~~~ 160 (704)
++++|||+||+.+++++++ .| .++. ++|++. .+. ....+.+.++++|+.+|||+++++++
T Consensus 1 ~vl~SGGkDS~~al~~a~~---~G-----------~~v~~l~~~~~-~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~ 65 (218)
T TIGR03679 1 AALYSGGKDSNYALYKALE---EG-----------HEVRCLITVVP-ENEESYMFHTPNIELTRLQAEALGIPLVKIETS 65 (218)
T ss_pred CeeecCcHHHHHHHHHHHH---cC-----------CEEEEEEEecc-CCCCccccCCCCHHHHHHHHHHhCCCEEEEECC
Confidence 4789999999999998865 23 2564 446653 211 12336677899999999999998875
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCcccccccccccccccccccc
Q 005288 161 WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240 (704)
Q Consensus 161 ~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~~ 240 (704)
+.. ..+. ..-+..+.+++++ |++.|++|.+.+|...+...+++..
T Consensus 66 ~~~------~~~~---~~l~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~v~~~------------------------- 110 (218)
T TIGR03679 66 GEK------EKEV---EDLKGALKELKRE-GVEGIVTGAIASRYQKSRIERICEE------------------------- 110 (218)
T ss_pred CCC------hHHH---HHHHHHHHHHHHc-CCCEEEECCcccHhHHHHHHHHHHh-------------------------
Confidence 310 1111 1144555666555 9999999999998665554444422
Q ss_pred cccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCC
Q 005288 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNR 279 (704)
Q Consensus 241 ~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~ 279 (704)
.++.++.||...+|.|+.+-+...|+..+.-..+.
T Consensus 111 ----~gl~~~~PLw~~~~~el~~~~~~~G~~~~i~~v~~ 145 (218)
T TIGR03679 111 ----LGLKVFAPLWGRDQEEYLRELVERGFRFIIVSVSA 145 (218)
T ss_pred ----CCCeEEeehhcCCHHHHHHHHHHCCCEEEEEEEec
Confidence 34679999999999999999999999887655443
No 67
>PRK08557 hypothetical protein; Provisional
Probab=98.86 E-value=6.1e-08 Score=107.97 Aligned_cols=149 Identities=19% Similarity=0.170 Sum_probs=97.9
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccc
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~ 161 (704)
+..+++++|||+||+|+++++.+.. .++.++|+|+|+ +.++-.++++++++.+|++++++..+.
T Consensus 181 ~~~i~vsfSGGKDS~vlL~L~~~~~--------------~~i~vvfvDTG~--efpET~e~ve~v~~~ygl~i~v~~~~~ 244 (417)
T PRK08557 181 GYAINASFSGGKDSSVSTLLAKEVI--------------PDLEVIFIDTGL--EYPETINYVKDFAKKYDLNLDTLDGDN 244 (417)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHhC--------------CCCEEEEEECCC--CCHHHHHHHHHHHHHhCCCEEEEechH
Confidence 4679999999999999999987541 146789999998 456678889999999999999886431
Q ss_pred --c----CCCCCCCChHHHHHHHHHHHHHHHHHH---cCCCEeecccccchhHHHHHHHHhccCCCCCcccccccccccc
Q 005288 162 --L----DGRPKQGHLQEAARDMRYRLFQKVCIQ---HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS 232 (704)
Q Consensus 162 --~----~~~~~~gniEe~AR~~RY~~L~~~A~e---~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~ 232 (704)
. .+.+. .+.--.|+...-.-+.++.++ .+....++|--.++-....-+...+..| .
T Consensus 245 f~~~~~~~G~Ps-~~~RwCc~~lKi~Pl~r~lk~~~~~~~~l~i~G~Rr~ES~~Ra~~~~~~~~~------~-------- 309 (417)
T PRK08557 245 FWENLEKEGIPT-KDNRWCNSACKLMPLKEYLKKKYGNKKVLTIDGSRKYESFTRANLDYERKSG------F-------- 309 (417)
T ss_pred HHHHHhhccCCc-ccchhhhHHHhHHHHHHHHHhhcCcCceEEEEeeecccchhhccCceecccc------c--------
Confidence 1 11111 112223344455556666665 2344667887777644211000000000 0
Q ss_pred cccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005288 233 SYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (704)
Q Consensus 233 ~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (704)
. .+..-+.|+++++..||.+|+.++++||
T Consensus 310 ----------~-~~~~~i~PI~~Wt~~dVW~YI~~~~lp~ 338 (417)
T PRK08557 310 ----------I-DFQTNVFPILDWNSLDIWSYIYLNDILY 338 (417)
T ss_pred ----------c-cCceeEEecccCCHHHHHHHHHHcCCCC
Confidence 0 1122469999999999999999999998
No 68
>PRK13795 hypothetical protein; Provisional
Probab=98.83 E-value=4.7e-08 Score=114.22 Aligned_cols=150 Identities=13% Similarity=0.070 Sum_probs=100.6
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccc
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~ 161 (704)
+++|+||+|||+||+|+++|+.+.. .++.++|+|+|+ +.++..++++++++.+|+++++.+...
T Consensus 243 ~~~v~Va~SGGKDS~vll~L~~~a~--------------~~~~vvfiDTg~--efpet~e~v~~~~~~~gi~i~~~~~~~ 306 (636)
T PRK13795 243 NLPVSVSFSGGKDSLVVLDLAREAL--------------KDFKAFFNNTGL--EFPETVENVKEVAEEYGIELIEADAGD 306 (636)
T ss_pred CCCEEEEecCcHHHHHHHHHHHHhC--------------CCcEEEEEeCCC--CCHHHHHHHHHHHHHcCCcEEEEcccH
Confidence 4689999999999999999997641 136789999998 557788899999999999999987642
Q ss_pred cCCC--CCCC----ChHHHHHHHHHHHHHHHHHHcC--CCEeecccccchhHHHHHHHHhccCCCCCccccccccccccc
Q 005288 162 LDGR--PKQG----HLQEAARDMRYRLFQKVCIQHQ--IGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSS 233 (704)
Q Consensus 162 ~~~~--~~~g----niEe~AR~~RY~~L~~~A~e~G--~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~ 233 (704)
.+.. ...+ +....|+.....-+.++.++.. ....++|-..++-....- ++....
T Consensus 307 ~f~~~~~~~g~P~~~~rwCc~~~K~~Pl~r~l~~~~~~~~~~i~G~Rr~ES~~R~~--------------~~~~~~---- 368 (636)
T PRK13795 307 AFWRAVEKFGPPARDYRWCCKVCKLGPITRAIKENFPKGCLTFVGQRKYESFSRAK--------------SPRVWR---- 368 (636)
T ss_pred hHHHhhhccCCCccccccchhhHhHHHHHHHHHhhCCCceEEEEEEEccchHHHhh--------------Cccccc----
Confidence 2111 0111 1122234444455666666652 235678888887553221 000000
Q ss_pred ccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005288 234 YAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (704)
Q Consensus 234 ~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (704)
.....+..-+.|+++++..||..|...+++||
T Consensus 369 -------~~~~~~~~~~~PI~~Wt~~dVw~YI~~~~lp~ 400 (636)
T PRK13795 369 -------NPWVPNQIGASPIQDWTALEVWLYIFWRKLPY 400 (636)
T ss_pred -------CCCCCCcEEEechHhCCHHHHHHHHHHhCCCC
Confidence 00012335689999999999999999999998
No 69
>PRK02628 nadE NAD synthetase; Reviewed
Probab=98.83 E-value=4.3e-08 Score=115.37 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=105.7
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHhhhhC-CCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc
Q 005288 81 PHHRIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRC 159 (704)
Q Consensus 81 ~~~kVlVAVSGGvDSmaLL~LL~~~~~~-g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~ 159 (704)
..++|+||+|||+||++++.++.++... +. ...++++|++ .+ +..|+...+.++++|+.+||+++++++
T Consensus 360 ~~~~vvvglSGGiDSal~l~l~~~a~~~lg~--------~~~~v~~v~m-p~-~~ss~~s~~~a~~la~~LGi~~~~i~I 429 (679)
T PRK02628 360 GLKKVVIGISGGLDSTHALLVAAKAMDRLGL--------PRKNILAYTM-PG-FATTDRTKNNAVALMKALGVTAREIDI 429 (679)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHHHHhhCC--------CcceEEEEEC-CC-CCCCHHHHHHHHHHHHHhCCeEEEEEc
Confidence 3689999999999999988888775321 21 1247899998 44 356778888999999999999999987
Q ss_pred cccCC-------CC-----C--CCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccc
Q 005288 160 DWLDG-------RP-----K--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMA 225 (704)
Q Consensus 160 ~~~~~-------~~-----~--~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~ 225 (704)
+.... .+ . ....|..+-++|..+|..+|.+.|+.+|.|| |..|+.+......- |
T Consensus 430 ~~~~~~~~~~l~~~~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tg----n~sE~~~Gy~T~~~---G----- 497 (679)
T PRK02628 430 RPAALQMLKDIGHPFARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTG----DLSELALGWCTYGV---G----- 497 (679)
T ss_pred HHHHHHHHHHhccccccCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCC----chhhHHhCceecCC---C-----
Confidence 53210 01 0 0022445667888999999999999999999 77887763221110 0
Q ss_pred ccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCC
Q 005288 226 FSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGN 269 (704)
Q Consensus 226 ~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~g 269 (704)
...--+-|+-+++|.+|+++++..+
T Consensus 498 -------------------D~~~~~~~~~~l~Kt~v~~l~~~~~ 522 (679)
T PRK02628 498 -------------------DHMSHYNVNASVPKTLIQHLIRWVI 522 (679)
T ss_pred -------------------CcccccccccCCcHHHHHHHHHHHH
Confidence 0112467889999999999998874
No 70
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=98.82 E-value=8.8e-08 Score=98.63 Aligned_cols=150 Identities=13% Similarity=0.146 Sum_probs=104.5
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccc
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~ 161 (704)
+++++++.|||+||+|+++|+.+... ..+-+|+||+|. +-++-.+++.++.+.+|+.+.++....
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~~~~-------------~~i~vv~vDTg~--~fpET~e~~d~~~~~~~~~l~v~~~~~ 89 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSSISE-------------PMIPVIFIDTLY--HFPQTLTLKDELTKKYYQTLNLYKYDG 89 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhC-------------CCCCEEEEeCCC--CCHHHHHHHHHHHHHhCCceEEEEeCC
Confidence 35799999999999999999987531 134589999998 667778889999999995444433211
Q ss_pred c---------CCCC-CCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccccc
Q 005288 162 L---------DGRP-KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231 (704)
Q Consensus 162 ~---------~~~~-~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf 231 (704)
. .+.. -..+++..|+...-+-|.++.++++.+.+++|--.++-.. | +.++...
T Consensus 90 ~~~~~~~~~~~G~~~~~~~~~~cc~~~Kv~Pl~ral~~~~~~~~itG~Rr~es~~-------R-------a~~~~~~--- 152 (226)
T TIGR02057 90 CESEADFEAKYGKLLWQKDIEKYDYIAKVEPMQRALKELNASAWFTGRRRDQGSA-------R-------ANLPVIE--- 152 (226)
T ss_pred chhHHHHHHhcCCCccccCHHHHHHHHhhHHHHHHHHhcCCCEEEEecchhhCcc-------c-------cCCcccc---
Confidence 0 0000 0113555666666677888888988888999987666321 1 1122110
Q ss_pred ccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005288 232 SSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (704)
Q Consensus 232 ~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (704)
.....++.-+.||++++..||.+|..+++||+
T Consensus 153 ---------~d~~~~~~kv~Pi~~Wt~~dVw~Yi~~~~lP~ 184 (226)
T TIGR02057 153 ---------IDEQNGILKVNPLIDWTFEQVYQYLDAHNVPY 184 (226)
T ss_pred ---------ccCCCCeEEEeehhhCCHHHHHHHHHHcCCCC
Confidence 01123566789999999999999999999999
No 71
>PRK05370 argininosuccinate synthase; Validated
Probab=98.78 E-value=6.5e-08 Score=107.50 Aligned_cols=152 Identities=14% Similarity=0.187 Sum_probs=109.7
Q ss_pred CCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCC-eEEEE
Q 005288 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIV 157 (704)
Q Consensus 79 l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGI-p~~Iv 157 (704)
+.+++||++|+|||.||++++.+|++ ++ .+|+|+++|-|.- ..+|.+.+++-+.++|. +++++
T Consensus 8 l~~~~KVvLAYSGGLDTSv~l~wL~e---~~-----------~eVia~~aDvGQ~--~~ed~~~i~~kA~~~GA~~~~vi 71 (447)
T PRK05370 8 LPVGQRVGIAFSGGLDTSAALLWMRQ---KG-----------AVPYAYTANLGQP--DEDDYDAIPRRAMEYGAENARLI 71 (447)
T ss_pred CCCCCEEEEEecCCchHHHHHHHHHh---cC-----------CeEEEEEEECCCC--CccchHHHHHHHHHhCCCEEEEe
Confidence 55678999999999999999988864 12 3799999999962 13467788999999998 79999
Q ss_pred EccccCCC---C-CCC-------------ChHHHHHHHHHHHHHHHHHHcCCCEeecccc--cchhHHHHHHHHhccCCC
Q 005288 158 RCDWLDGR---P-KQG-------------HLQEAARDMRYRLFQKVCIQHQIGVLLIAHH--ADDQAELFILRLSRNSGV 218 (704)
Q Consensus 158 ~~~~~~~~---~-~~g-------------niEe~AR~~RY~~L~~~A~e~G~~~LatGHh--aDDqaET~LmrL~RGsGl 218 (704)
++...+.. + .+. ..-..+|.+--..+-++|++.|+++|+-|-+ -+||+--=+
T Consensus 72 Dlr~eF~e~~i~aI~anA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQvRFE~--------- 142 (447)
T PRK05370 72 DCRAQLVAEGIAAIQCGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYR--------- 142 (447)
T ss_pred ccHHHHHHHHHHHHHcCCccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCCchHHHHH---------
Confidence 88654321 0 000 1123467777777889999999999988874 568863110
Q ss_pred CCcccccccccccccccccccccccCCCeEEEeeCCCC-------CHHHHHHHHHhCCCceeeC
Q 005288 219 LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF-------SKDDMYKICQGGNRDWVED 275 (704)
Q Consensus 219 ~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~l-------sK~EIr~y~~~~gLp~veD 275 (704)
....+. ..+.++-|.+++ +|+|..+||+++|||.-.+
T Consensus 143 -~~~aL~-------------------P~l~ViaPwRd~~~~~~f~sR~e~i~Ya~~hGIpv~~~ 186 (447)
T PRK05370 143 -YGLLTN-------------------PELKIYKPWLDQDFIDELGGRAEMSEFLIAHGFDYKMS 186 (447)
T ss_pred -HHHHhC-------------------CCCeEecchhhhhcccccCCHHHHHHHHHHcCCCCCcc
Confidence 011111 235689998874 8999999999999997433
No 72
>PRK00876 nadE NAD synthetase; Reviewed
Probab=98.76 E-value=2.2e-07 Score=100.62 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHH
Q 005288 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143 (704)
Q Consensus 64 ~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V 143 (704)
+.+.+.|+..+..+. ..++|+|++|||+||+++++++.+.... .++++++++.+. .+.+|.+.+
T Consensus 17 e~i~~~l~~~V~~~~--~~~~VvVgLSGGIDSSvvaaLa~~a~g~------------~~v~av~~~~~~--s~~~e~~~A 80 (326)
T PRK00876 17 ERIRAAIREQVRGTL--RRRGVVLGLSGGIDSSVTAALCVRALGK------------ERVYGLLMPERD--SSPESLRLG 80 (326)
T ss_pred HHHHHHHHHHHHHHc--CCCCEEEEccCCHHHHHHHHHHHHhhCC------------CcEEEEEecCCC--CChHHHHHH
Confidence 344444455555421 2248999999999999999998764210 267899998774 356788999
Q ss_pred HHHHHhcCCeEEEEEccc
Q 005288 144 SHRVSDMGIRCEIVRCDW 161 (704)
Q Consensus 144 ~kl~~~LGIp~~Iv~~~~ 161 (704)
+++|+.+|+++++++++.
T Consensus 81 ~~lA~~LGi~~~~i~i~~ 98 (326)
T PRK00876 81 REVAEHLGVEYVVEDITP 98 (326)
T ss_pred HHHHHHcCCCEEEEECch
Confidence 999999999999988764
No 73
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=98.75 E-value=9.8e-08 Score=104.77 Aligned_cols=150 Identities=15% Similarity=0.188 Sum_probs=103.6
Q ss_pred CCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHH-Hhc-----CCe
Q 005288 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRV-SDM-----GIR 153 (704)
Q Consensus 80 ~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~-~~L-----GIp 153 (704)
....++++-+|||.||-|++|++. ++|. .+.++|++.+-- .+.+-.+.+..++ ..+ .+.
T Consensus 173 Gt~Gk~l~LlSGGIDSPVA~~l~m---kRG~-----------~v~~v~f~~~p~-~~~~a~~k~~~l~~~~~~~~~~~~~ 237 (383)
T COG0301 173 GTQGKVLLLLSGGIDSPVAAWLMM---KRGV-----------EVIPVHFGNPPY-TSEKAREKVVALALLRLTSYGGKVR 237 (383)
T ss_pred ccCCcEEEEEeCCCChHHHHHHHH---hcCC-----------EEEEEEEcCCCC-chHHHHHHHHHHHhhhhcccCCceE
Confidence 345899999999999999999985 3443 788999864321 2233333333333 222 356
Q ss_pred EEEEEccccCCC----CCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccc
Q 005288 154 CEIVRCDWLDGR----PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQ 229 (704)
Q Consensus 154 ~~Iv~~~~~~~~----~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~ 229 (704)
++++++...... ...+-..-.+|++.|+.-.++|++.|+..|+||-.+..++-..+-| |..|...
T Consensus 238 ~~~v~f~~v~~~i~~~~~~~y~~v~~rR~M~riA~~iae~~g~~aIvtGEsLGQVASQTl~n---------L~~i~~~-- 306 (383)
T COG0301 238 LYVVPFTEVQEEILEKVPESYRCVLLKRMMYRIAEKLAEEFGAKAIVTGESLGQVASQTLEN---------LRVIDSV-- 306 (383)
T ss_pred EEEEchHHHHHHHHhhcCccceehHHHHHHHHHHHHHHHHhCCeEEEecCcchhhhHhHHHH---------HHHHHhc--
Confidence 666655322110 1112345678999999999999999999999999999988766543 3333322
Q ss_pred ccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCC
Q 005288 230 IFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNR 270 (704)
Q Consensus 230 vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gL 270 (704)
-+..|+|||+.++|+||.+++++.|-
T Consensus 307 ---------------t~~pIlRPLI~~DK~eIi~~Ar~IgT 332 (383)
T COG0301 307 ---------------TNTPVLRPLIGLDKEEIIEIARRIGT 332 (383)
T ss_pred ---------------cCCceeccccCCCHHHHHHHHHHhCC
Confidence 23569999999999999999999884
No 74
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=98.65 E-value=3e-07 Score=100.19 Aligned_cols=149 Identities=13% Similarity=0.155 Sum_probs=110.9
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCe-EEEEEcc
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR-CEIVRCD 160 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp-~~Iv~~~ 160 (704)
.+||++|+|||.|++|++.+|++- .+.+++++++|-|.- .+|.+.+++-+.++|.. ++++|+.
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL~e~-------------~~~eVia~tadvGQ~---eed~~~i~eKA~~~Ga~~~~viD~r 67 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWLKEK-------------GGAEVIAVTADVGQP---EEDLDAIREKALELGAEEAYVIDAR 67 (403)
T ss_pred CcEEEEEecCCccHHHHHHHHHHh-------------cCceEEEEEEeCCCC---hHHhHHHHHHHHHhCCceEEEeecH
Confidence 479999999999999999888642 124899999999972 67889999999999986 9999887
Q ss_pred ccCCCC-------C----CC---ChHHHHHHHHHHHHHHHHHHcCCCEeecccc--cchhHHHHHHHHhccCCCCCcccc
Q 005288 161 WLDGRP-------K----QG---HLQEAARDMRYRLFQKVCIQHQIGVLLIAHH--ADDQAELFILRLSRNSGVLGLAGM 224 (704)
Q Consensus 161 ~~~~~~-------~----~g---niEe~AR~~RY~~L~~~A~e~G~~~LatGHh--aDDqaET~LmrL~RGsGl~GLaGm 224 (704)
..+... . .+ ..-..||.+--..+-++|++.|++.|+-|-+ -+||+--- ++..
T Consensus 68 eeF~~~yi~~~i~ana~Yeg~YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQvRFe------------~~~~ 135 (403)
T COG0137 68 EEFVEDYIFPAIKANALYEGVYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQVRFE------------LAIL 135 (403)
T ss_pred HHHHHHHHHHHHHhhceeeccccccchhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCceeeee------------eehh
Confidence 654210 0 00 1234678888888999999999999987754 35665210 1100
Q ss_pred cccccccccccccccccccCCCeEEEeeCCC--CCHHHHHHHHHhCCCceeeC
Q 005288 225 AFSSQIFSSYAYSCHDDLKNHSILLVRPLLD--FSKDDMYKICQGGNRDWVED 275 (704)
Q Consensus 225 ~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~--lsK~EIr~y~~~~gLp~veD 275 (704)
.-+.++++|-|.++ ++|++..+|++++|||+-.+
T Consensus 136 -----------------al~p~lkiiAP~Rew~~~R~~~i~Ya~~~gipv~~~ 171 (403)
T COG0137 136 -----------------ALNPDLKIIAPWREWNLTREEEIEYAEEHGIPVKAT 171 (403)
T ss_pred -----------------hhCCCcEEEeehhhhccChHHHHHHHHHcCCCcccc
Confidence 01245789999985 88999999999999998766
No 75
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=98.64 E-value=5.4e-08 Score=100.41 Aligned_cols=111 Identities=17% Similarity=0.217 Sum_probs=79.3
Q ss_pred CCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc
Q 005288 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRC 159 (704)
Q Consensus 80 ~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~ 159 (704)
..+.+|++++|||.||+++++++.+.... .+.+++++++.. ..+|...+++.|+.+|++++++.+
T Consensus 13 ~~~~~v~~~LSGGlDSs~va~~~~~~~~~-------------~~~~~~~~~~~~--~~~e~~~a~~~a~~l~~~~~~~~~ 77 (269)
T cd01991 13 RSDVPVGVLLSGGLDSSLVAALAARLLPE-------------PVKTFSIGFGFE--GSDEREYARRVAEHLGTEHHEVEF 77 (269)
T ss_pred ccCCceEEeecccHHHHHHHHHHHHhhCC-------------CCceEEEeeCCC--CCChHHHHHHHHHHhCCcceEEEc
Confidence 44688999999999999999998764211 256788888753 234688899999999999999886
Q ss_pred cccCCCC-------CCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhH
Q 005288 160 DWLDGRP-------KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (704)
Q Consensus 160 ~~~~~~~-------~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqa 205 (704)
+...... ...++...+-.....++.+.+++.|+.++++||.+|+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~a~~~~~~v~l~G~g~Delf 130 (269)
T cd01991 78 TPADLLAALPDVIWELDEPFADSSAIPLYLLSRLARKHGIKVVLSGEGADELF 130 (269)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHhCCEEEEecCCccccc
Confidence 5422100 001112222334556788889999999999999999964
No 76
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.63 E-value=2.7e-07 Score=96.96 Aligned_cols=162 Identities=17% Similarity=0.201 Sum_probs=111.7
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~ 162 (704)
..+++++|||+||+|+++|+.+... ++.++|||+|+ +-.+-.+++.++.+++|+++.+...+..
T Consensus 40 ~~~~~~~S~Gkds~V~l~L~~k~~~--------------~~~vif~DTg~--~f~Et~~~~d~~~~~~~~~l~~~~~~~~ 103 (261)
T COG0175 40 NPVVVSFSGGKDSTVLLHLAAKAFP--------------DFPVIFLDTGY--HFPETYEFRDRLAEEYGLDLKVYRPDDE 103 (261)
T ss_pred CCeEEEecCchhHHHHHHHHHHhcC--------------CCcEEEEeCCC--cCHHHHHHHHHHHHHcCCeEEEecCccc
Confidence 3489999999999999999987521 35689999998 5677889999999999999888765432
Q ss_pred CCCC---C----CCChHH-HHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCcccccccccccccc
Q 005288 163 DGRP---K----QGHLQE-AARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY 234 (704)
Q Consensus 163 ~~~~---~----~gniEe-~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~ 234 (704)
.... . ..+... .|....-.-|.++-++.+.+.+++|--.|+.... +.++..+.
T Consensus 104 ~~~~~~~~~~~~~~~~~r~c~~i~K~~pl~~al~~~~~~a~~~G~Rrdes~~R--------------ak~~~~~~----- 164 (261)
T COG0175 104 VAEGEKYGGKLWEPSVERWCCDIRKVEPLKRALDEYGFDAWFTGLRRDESPTR--------------AKLPVVSF----- 164 (261)
T ss_pred hhhhhhcccCCCCCCcchhhhhhHhhhhHHHHHhhcCCceEEEeccccccccc--------------ccCceecc-----
Confidence 2111 0 112122 2344445568888888888899999777764321 22332210
Q ss_pred cccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHHhc
Q 005288 235 AYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292 (704)
Q Consensus 235 ~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~~L 292 (704)
....++..-+-||.+.+..||..|...+++|| ++.|.+..-|--.
T Consensus 165 ------~~~~~~~~rv~Pl~~Wt~~dVw~Yi~~~~lp~-------npLy~~Gy~siGC 209 (261)
T COG0175 165 ------DSEFGESIRVNPLADWTELDVWLYILANNLPY-------NPLYDQGYRSIGC 209 (261)
T ss_pred ------ccCcCCeEEEcchhcCCHHHHHHHHHHhCCCC-------CcHHhccCCccCc
Confidence 00111356789999999999999999999999 3556655444333
No 77
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=98.62 E-value=2.3e-07 Score=102.27 Aligned_cols=145 Identities=16% Similarity=0.197 Sum_probs=92.8
Q ss_pred EEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCC-eEEEEEccccCC
Q 005288 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDWLDG 164 (704)
Q Consensus 86 lVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGI-p~~Iv~~~~~~~ 164 (704)
++|+|||.||++++.+|++- + +.+++|+++|-|.- ++|.+.+++.+.++|. +++++++...+.
T Consensus 1 VLAySGGLDTS~~l~~L~e~---~----------~~~Via~~aDlGq~---~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~ 64 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEE---G----------GYEVIAVTADLGQP---DEDLEAIEEKALKLGASKHIVVDARDEFA 64 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHT---T----------TEEEEEEEEESSST----S-HHHHHHHHHHHT-SEEEEEE-HHHHH
T ss_pred CeeeCCChHHHHHHHHHHhh---c----------CceEEEEEEECCCc---HHHHHHHHHHHHhcCCceeeecchHHHHH
Confidence 68999999999999888642 1 13899999999972 4578889999999997 999999875432
Q ss_pred CC-----------CCC---ChHHHHHHHHHHHHHHHHHHcCCCEeeccccc--chhHHHHHHHHhccCCCCCcccccccc
Q 005288 165 RP-----------KQG---HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGMAFSS 228 (704)
Q Consensus 165 ~~-----------~~g---niEe~AR~~RY~~L~~~A~e~G~~~LatGHha--DDqaET~LmrL~RGsGl~GLaGm~~~~ 228 (704)
.. -.+ ..-..+|.+--+.+-++|++.|+++|+-|-+. +||+---+. +...
T Consensus 65 ~~~i~~aI~anA~Yeg~YpL~tsl~RplIa~~~v~~A~~~ga~~vaHG~TgkGNDqvRFe~~----------~~al---- 130 (388)
T PF00764_consen 65 EDYIFPAIKANALYEGRYPLSTSLARPLIAKKLVEVAREEGADAVAHGCTGKGNDQVRFELS----------IRAL---- 130 (388)
T ss_dssp HHTHHHHHHTT--BTTTB--CCCCHHHHHHHHHHHHHHHHT-SEEE----TTSSHHHHHHHH----------HHHH----
T ss_pred HHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHcCCeEEeccCCcCCCchhHHHHH----------HHHh----
Confidence 10 001 01224677777788899999999999877654 888731110 0111
Q ss_pred cccccccccccccccCCCeEEEeeCCC--CCHHHHHHHHHhCCCceeeC
Q 005288 229 QIFSSYAYSCHDDLKNHSILLVRPLLD--FSKDDMYKICQGGNRDWVED 275 (704)
Q Consensus 229 ~vf~~~~~~~~~~~~~~~i~IIRPLL~--lsK~EIr~y~~~~gLp~veD 275 (704)
...+.++-|.++ ++|+|..+|++++|||.-..
T Consensus 131 ---------------~P~l~viaP~Rd~~~~R~~~i~ya~~~gIpv~~~ 164 (388)
T PF00764_consen 131 ---------------APELKVIAPWRDWEFSREEEIEYAKKHGIPVPVT 164 (388)
T ss_dssp ---------------STTSEEE-GGGHHHHHHHHHHHHHHHTT----SS
T ss_pred ---------------CcCCcEecccchhhhhHHHHHHHHHHcCCCCCCC
Confidence 123568888885 77999999999999987554
No 78
>PRK13981 NAD synthetase; Provisional
Probab=98.58 E-value=6.6e-07 Score=102.63 Aligned_cols=161 Identities=16% Similarity=0.186 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHcCC-CCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHH
Q 005288 63 MTKYREAFSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141 (704)
Q Consensus 63 ~~~~~e~f~~~i~~~~l-~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae 141 (704)
.+++.+.+...+++..- ...++++||+|||+||++++.|+.+.... .+++++++.... .+..+.+
T Consensus 260 ~~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~------------~~v~~~~~p~~~--~~~~~~~ 325 (540)
T PRK13981 260 EAEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGA------------ERVRAVMMPSRY--TSEESLD 325 (540)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCc------------CcEEEEECCCCC--CCHHHHH
Confidence 34455554433333211 23468999999999999999998764211 257888877443 3456778
Q ss_pred HHHHHHHhcCCeEEEEEccccCC------CC----CC--CChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHH
Q 005288 142 IVSHRVSDMGIRCEIVRCDWLDG------RP----KQ--GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI 209 (704)
Q Consensus 142 ~V~kl~~~LGIp~~Iv~~~~~~~------~~----~~--gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~L 209 (704)
.++++|+.+|+++++++++.... .. .. -..+....++|...+..+|..+|+-+|.||+--... +
T Consensus 326 ~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~a~~~~~lvlgt~n~sE~~----~ 401 (540)
T PRK13981 326 DAAALAKNLGVRYDIIPIEPAFEAFEAALAPLFAGTEPDITEENLQSRIRGTLLMALSNKFGSLVLTTGNKSEMA----V 401 (540)
T ss_pred HHHHHHHHcCCeEEEEECHHHHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhccCCEEEeCCccCHHH----c
Confidence 89999999999999998764210 00 00 112333456777889999999988777777544331 1
Q ss_pred HHHhccCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCC
Q 005288 210 LRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGN 269 (704)
Q Consensus 210 mrL~RGsGl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~g 269 (704)
|.. .+- .++ .--+-|+.+++|.+|+++++.+|
T Consensus 402 -------Gy~---t~~-----------------GD~-~~~~~pi~~l~K~~v~~la~~~~ 433 (540)
T PRK13981 402 -------GYA---TLY-----------------GDM-AGGFAPIKDVYKTLVYRLCRWRN 433 (540)
T ss_pred -------CCe---Eec-----------------CCc-ccCccccCCCCHHHHHHHHHHHH
Confidence 211 110 011 12478999999999999999887
No 79
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=98.48 E-value=7.1e-07 Score=90.18 Aligned_cols=125 Identities=20% Similarity=0.239 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHH
Q 005288 65 KYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144 (704)
Q Consensus 65 ~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~ 144 (704)
|+++.|.+.+... +..+.+|.+.+|||.||.+++.++.+. . +..+.+++++.+-. ...|...++
T Consensus 1 ~~r~~l~~av~~r-l~~~~~i~~~LSGGlDSs~i~~~~~~~--~-----------~~~~~~~t~~~~~~--~~~e~~~a~ 64 (255)
T PF00733_consen 1 ELRELLEEAVARR-LRSDKPIGILLSGGLDSSAIAALAARQ--G-----------GPPIKTFTIGFEDD--DYDEREYAR 64 (255)
T ss_dssp HHHHHHHHHHHHH-CGCTSEEEEE--SSHHHHHHHHHHHHT--C-----------CSEEEEEEEECSSC--C--HHHHHH
T ss_pred CHHHHHHHHHHHH-HhcCCCEEEECCCChhHHHHHHHHHHh--h-----------CCceeEEEEEcCCC--cchhHHHHH
Confidence 4566666666553 346789999999999999999998761 1 13678888887653 233888999
Q ss_pred HHHHhcCCeEEEEEccccCCCC-------CCCChHH--HHHHHHHHHHHHHHHHcCCCEeecccccchhH
Q 005288 145 HRVSDMGIRCEIVRCDWLDGRP-------KQGHLQE--AARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (704)
Q Consensus 145 kl~~~LGIp~~Iv~~~~~~~~~-------~~gniEe--~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqa 205 (704)
++++.+|++++.+..+...... ....+.. .+-..-+..+.+.+++.|.+.+++||-.|...
T Consensus 65 ~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~ltG~GgDelf 134 (255)
T PF00733_consen 65 KVARHLGLEHHEIELDPEDLLDNLEDIIWRLDGPSPLDDPNSLPLYLLARLARENGIRVLLTGQGGDELF 134 (255)
T ss_dssp HHHHHHT-EEEEEEE-HHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHCHTTBSEEE--TTHHHHH
T ss_pred HHhcccccccceeeechhhHHHhHHHHHHHHhCCcccccccccHHHHHHHhhcccceeEEEecccccccc
Confidence 9999999999888765432100 0001111 22222333466777788999999999998754
No 80
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=1.9e-07 Score=91.04 Aligned_cols=159 Identities=15% Similarity=0.195 Sum_probs=104.2
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccC
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~ 163 (704)
+|-+-+|||+||+..+++|.++ +.++..|+|++|+-++ -+.+++-++.+|.||.++.++-.-
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~kl--------------gyev~LVTvnFGv~d~----~k~A~~tA~~lgF~h~vl~Ldr~i 63 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKL--------------GYEVELVTVNFGVLDS----WKYARETAAILGFPHEVLQLDREI 63 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHh--------------CCCcEEEEEEeccccc----hhhHHHHHHHhCCCcceeccCHHH
Confidence 4678999999999999998753 3478999999998543 356778888999999999875321
Q ss_pred -----------CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCcccccccccccc
Q 005288 164 -----------GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS 232 (704)
Q Consensus 164 -----------~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~ 232 (704)
+.|. ..++ -+--..++.+|.. .++.|+-|+..||.+-++-. +-+.+
T Consensus 64 le~A~em~iedg~P~-~aIq----~iH~~alE~~A~r-~~~~iaDGTRRDDrvP~ls~-----------~~~qS------ 120 (198)
T COG2117 64 LEDAVEMIIEDGYPR-NAIQ----YIHEMALEALASR-EVDRIADGTRRDDRVPKLSR-----------SEAQS------ 120 (198)
T ss_pred HHHHHHHHHhcCCCc-hHHH----HHHHHHHHHHHHH-HHHHHcCCCcccccCccccH-----------HHHhh------
Confidence 0111 0111 1222346666665 57889999999997654311 11111
Q ss_pred cccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCC--chhHHHHHHhch
Q 005288 233 SYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSP--LFVRNRIRMSLG 293 (704)
Q Consensus 233 ~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~--~y~RNrIR~~L~ 293 (704)
+..+.++..++||+.+-+.-|+.++...= ..-+-||...+ .|. .-+|..|.
T Consensus 121 --------LEdR~nv~Yi~PL~G~G~kti~~Lv~~~f-~~e~~~Se~~~k~DYE-aElR~lL~ 173 (198)
T COG2117 121 --------LEDRLNVQYIRPLLGLGYKTIRRLVSAIF-ILEEGPSEKIEKADYE-AELRYLLR 173 (198)
T ss_pred --------HHHhcCceeecccccccHHHHHHHHHHHe-eeeccccccccccchH-HHHHHHHH
Confidence 22466889999999999999999987642 22233444333 342 34555543
No 81
>PRK06850 hypothetical protein; Provisional
Probab=98.45 E-value=7.6e-06 Score=93.20 Aligned_cols=169 Identities=14% Similarity=0.173 Sum_probs=97.4
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHH-------HHHHHHHHhcCCe
Q 005288 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA-------NIVSHRVSDMGIR 153 (704)
Q Consensus 81 ~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Ea-------e~V~kl~~~LGIp 153 (704)
.+..++||+|||+||+|++.|+.++.... +. .+-...+++++.|.|+ |.++-. +.+++.+++.|+|
T Consensus 33 ~~~P~vV~fSGGKDStavL~Lv~~Al~~l-p~----e~r~k~v~Vi~~DTgv--E~Pe~~~~v~~~l~~i~~~a~~~glp 105 (507)
T PRK06850 33 DNRPWVIGYSGGKDSTAVLQLVWNALAGL-PP----EKRTKPVYVISSDTLV--ENPVVVDWVNKSLERINEAAKKQGLP 105 (507)
T ss_pred CCCCeEEeCCCCchHHHHHHHHHHHHHhc-ch----hccCCcEEEEECCCCC--ccHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 45678999999999999999987764321 10 0111368899999998 544333 4445567788999
Q ss_pred EEEEEcccc-----------CCCCCCCChHHHH-HHHHH----HHHHHHHHHcCCCEeecccccchhHHHHH-HHHhccC
Q 005288 154 CEIVRCDWL-----------DGRPKQGHLQEAA-RDMRY----RLFQKVCIQHQIGVLLIAHHADDQAELFI-LRLSRNS 216 (704)
Q Consensus 154 ~~Iv~~~~~-----------~~~~~~gniEe~A-R~~RY----~~L~~~A~e~G~~~LatGHhaDDqaET~L-mrL~RGs 216 (704)
+.+..+... .+.|...+.--.| ..++. +++.+..+++|-..+++|--.+.-+.-.- |.. ++
T Consensus 106 i~~~~v~P~~~~sFwv~liGrG~P~Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES~~RA~~m~~-~~- 183 (507)
T PRK06850 106 ITPHKLTPKINDTFWVNLIGKGYPAPRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAESAARAQVMAK-HE- 183 (507)
T ss_pred eEEEeeCCCcchhHHHHHhcCCCCCCCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeeccccHHHHhhhhh-hc-
Confidence 876433211 0011000000111 12222 34445555667778899988776443221 111 11
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceee
Q 005288 217 GVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVE 274 (704)
Q Consensus 217 Gl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ve 274 (704)
..+ ..... .....+...+.|+.+++-+||..|....+.||-.
T Consensus 184 -~~~-~rl~~--------------~~~~~~~~v~~PI~dWs~dDVW~YL~~~~~P~g~ 225 (507)
T PRK06850 184 -IEG-SRLSR--------------HTTLPNAFVYTPIEDWSNDDVWKYLLQWENPWGG 225 (507)
T ss_pred -ccC-cceee--------------ccCCCCcEEEeChHhCCHHHHHHHHHhcCCCCCC
Confidence 111 00000 0112345689999999999999999999999953
No 82
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=98.38 E-value=1.1e-05 Score=90.71 Aligned_cols=169 Identities=15% Similarity=0.175 Sum_probs=97.7
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHH-------HHHHHHHhcCCeE
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN-------IVSHRVSDMGIRC 154 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae-------~V~kl~~~LGIp~ 154 (704)
+..++||+|||+||+|++.|+.++... .+. .+....+++++.|.|. |.++-.+ .+++.+++.|+|+
T Consensus 13 ~~p~vV~fSGGKDSta~L~Lv~~Al~~-lp~----e~~~k~v~VI~~DTgv--E~Pe~~~~v~~~l~~i~~~a~~~~lpi 85 (447)
T TIGR03183 13 DIPWVVGYSGGKDSTAVLQLIWNALAA-LPA----EQRTKKIHVISTDTLV--ENPIVAAWVNASLERMQEAAQDQGLPI 85 (447)
T ss_pred CCceEEEeCCCHHHHHHHHHHHHHHHh-ccc----cccCcceEEEECcCCC--ccHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 466899999999999999998776432 110 0112357888899998 5444333 3455778888887
Q ss_pred EEEEccccC-----------CCCC-CCChHHHHHHHHH----HHHHHHHHHcCCCEeecccccchhHHHHH-HHHhccCC
Q 005288 155 EIVRCDWLD-----------GRPK-QGHLQEAARDMRY----RLFQKVCIQHQIGVLLIAHHADDQAELFI-LRLSRNSG 217 (704)
Q Consensus 155 ~Iv~~~~~~-----------~~~~-~gniEe~AR~~RY----~~L~~~A~e~G~~~LatGHhaDDqaET~L-mrL~RGsG 217 (704)
.+..+.... +.+. .....--+..++. +++.+..++.|-..+++|.-.+.-+.--- |.-..++.
T Consensus 86 ~~~~v~P~~~~~Fwv~liGrG~P~P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~ES~~RA~~m~k~e~~~ 165 (447)
T TIGR03183 86 EPHRLTPEIKDTFWVNLIGKGYPAPRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAESQARAAVMEKHESGS 165 (447)
T ss_pred EEEecCCCcchHHHHHHhcCCCCCCCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhhHHHHHhhhhhhcccc
Confidence 754332110 0110 0001001112222 34566666778888999988776443221 11001111
Q ss_pred CCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005288 218 VLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (704)
Q Consensus 218 l~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (704)
..+ .+..+ ....+..++.|+.+++-+||..|....+.||-
T Consensus 166 ~r~--~l~~~--------------~~~~~~~v~~PI~dWs~~DVW~yL~~~~~P~g 205 (447)
T TIGR03183 166 LRD--RLSRN--------------SSLPNSWVYSPIEDWSNDDVWMYLLQVPNPWG 205 (447)
T ss_pred ccc--ccccc--------------CCCCCcEEEEChHhCCHHHHHHHHHhcCCCCC
Confidence 100 01010 11234578999999999999999999999984
No 83
>PRK00768 nadE NAD synthetase; Reviewed
Probab=98.34 E-value=5.8e-06 Score=87.42 Aligned_cols=170 Identities=14% Similarity=0.055 Sum_probs=98.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhC-CCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHH
Q 005288 68 EAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146 (704)
Q Consensus 68 e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~-g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl 146 (704)
+.++.++.+. ..+.++||+|||.||.+.+.|+.++... +. ...+....++++..-+. +..+.+.++.+
T Consensus 27 ~~L~~~l~~~---g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~----~~~~~~~~~~~l~mP~~----~~~~~~da~~l 95 (268)
T PRK00768 27 DFLKDYLKKS---GLKSLVLGISGGQDSTLAGRLAQLAVEELRA----ETGDDDYQFIAVRLPYG----VQADEDDAQDA 95 (268)
T ss_pred HHHHHHHHHc---CCCeEEEECCCCHHHHHHHHHHHHHHHHhcc----cccCcceeEEEEECCCC----CcCCHHHHHHH
Confidence 3344455443 3578999999999999999988776431 10 00001123444443332 12234556778
Q ss_pred HHhcCC-eEEEEEccccCC------CC-C--C--CChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhc
Q 005288 147 VSDMGI-RCEIVRCDWLDG------RP-K--Q--GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSR 214 (704)
Q Consensus 147 ~~~LGI-p~~Iv~~~~~~~------~~-~--~--gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~R 214 (704)
|+.+|+ ++.+++++.... .. . . ...+...-++|...+..+|...|+ +++|+. +..|..+
T Consensus 96 a~~lgi~~~~~i~I~~~~~~~~~~l~~~~~~~~~~a~~NiqARlRm~~Ly~~An~~~~--lvlgT~--N~sE~~~----- 166 (268)
T PRK00768 96 LAFIQPDRVLTVNIKPAVDASVAALEAAGIELSDFVKGNIKARERMIAQYAIAGATGG--LVVGTD--HAAEAVT----- 166 (268)
T ss_pred HHhcCCCeeEEEECHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHccCCC--EEEcCC--cccHHHh-----
Confidence 899999 788888653210 01 0 0 011222345677788888888776 555542 1223221
Q ss_pred cCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc--eeeCCCCCC
Q 005288 215 NSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD--WVEDPTNRS 280 (704)
Q Consensus 215 GsGl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp--~veDpSN~d 280 (704)
|..-.- .++ .--+-|+.+++|.||+++++.+|+| .++.|.-.+
T Consensus 167 --Gy~Tky--------------------GD~-~~d~~pi~~L~KteV~~La~~l~vP~~ii~k~Psa~ 211 (268)
T PRK00768 167 --GFFTKF--------------------GDG-GADILPLFGLNKRQGRALLAALGAPEHLYEKVPTAD 211 (268)
T ss_pred --Cceecc--------------------CCc-cccchhhcCCcHHHHHHHHHHhCCCHHHhcCCCCCC
Confidence 211100 111 1247799999999999999999998 666555544
No 84
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=98.30 E-value=2.1e-06 Score=96.77 Aligned_cols=130 Identities=13% Similarity=0.130 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHHHc---CCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHH
Q 005288 62 DMTKYREAFSRRMAMA---GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138 (704)
Q Consensus 62 ~~~~~~e~f~~~i~~~---~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~ 138 (704)
..+++.+.+++.+.++ .+..+.+|.+.+|||.||++++.++.+.... ..+.+++|+++-. ...+
T Consensus 230 ~~~~~~e~l~~~l~~aV~~r~~~~~~vg~~LSGGlDSs~iaa~a~~~~~~------------~~~~~~t~~~~~~-~~~~ 296 (467)
T TIGR01536 230 SEEDLVDELRSLLEDAVKRRLVADVPVGVLLSGGLDSSLVAAIARREAPR------------GPVHTFSIGFEGS-PDFD 296 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCceEEEecCChhHHHHHHHHHHhcCC------------CCceEEEEecCCC-CCCC
Confidence 3444555554444432 2445678999999999999999988654210 1467788887621 1235
Q ss_pred HHHHHHHHHHhcCCeEEEEEccccCCCC-------CCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchh
Q 005288 139 EANIVSHRVSDMGIRCEIVRCDWLDGRP-------KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (704)
Q Consensus 139 Eae~V~kl~~~LGIp~~Iv~~~~~~~~~-------~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDq 204 (704)
|...++++|+.+|++++++.++...... ...++......+...++.+.++++|++++++|+.+|++
T Consensus 297 E~~~A~~vA~~lg~~~~~i~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~l~~~a~~~G~~vlltG~GaDEl 369 (467)
T TIGR01536 297 ESPYARKVADHLGTEHHEVLFSVEEGLDALPEVIYHLEDPTTIRASIPLYLLSKLAREDGVKVVLSGEGADEL 369 (467)
T ss_pred hHHHHHHHHHHhCCcCeEEECCHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhcCCEEEEecCcchhc
Confidence 6778999999999999998775321100 00011111223333467788999999999999999996
No 85
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=98.18 E-value=2.1e-05 Score=83.19 Aligned_cols=162 Identities=17% Similarity=0.228 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHH
Q 005288 65 KYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144 (704)
Q Consensus 65 ~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~ 144 (704)
...+.++.++..++ .+++++++|||+||++.+.|+.+....+. ...++.++...++- -...+.+.+.
T Consensus 11 ~~~~fl~~~l~~~~---~k~~VlGiSGGiDSa~~~~La~~A~~~~~--------~~~~~~av~mP~~~--~~~~~~~da~ 77 (268)
T COG0171 11 RLVDFLRDYLKKAG---FKGVVLGLSGGIDSALVLALAVRALGKGD--------SKENVLAVRLPYGY--TVQADEEDAQ 77 (268)
T ss_pred HHHHHHHHHHHHcC---CCCeEEEcccChHHHHHHHHHHHHhcccc--------chhheeeEECCCCC--ccccCHHHHH
Confidence 33444555555433 36799999999999999999887643210 11357888888873 0334555677
Q ss_pred HHHHhcCCeEEEEEccccCC---C----CCCC------ChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHH
Q 005288 145 HRVSDMGIRCEIVRCDWLDG---R----PKQG------HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILR 211 (704)
Q Consensus 145 kl~~~LGIp~~Iv~~~~~~~---~----~~~g------niEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~Lmr 211 (704)
..++.+|+...++++..... . ...+ ..+...-+.|..++..+|.++|.=+|=||| ..|-.+
T Consensus 78 ~~~~~lg~~~~~i~I~~~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~~~~lVlGTgn----~sE~~~-- 151 (268)
T COG0171 78 DLAEALGIDYKEINIKPAVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILYAIANKLGGLVLGTGN----KSELAL-- 151 (268)
T ss_pred HHHHHhCCceEEEecHHHHHHHHHhhhhhhcccchhhHHHhhhhHHHHHHHHHHHHhhcCCEEEcCCc----HHHHhc--
Confidence 88889999977776543211 0 0101 122223456778888888887664444443 344332
Q ss_pred HhccCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc
Q 005288 212 LSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD 271 (704)
Q Consensus 212 L~RGsGl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp 271 (704)
|..- . ..++. .=+-|+-+++|.+++++++..|+|
T Consensus 152 -----Gy~T--------k------------yGDg~-~d~~Pi~~L~KtqV~~La~~l~ip 185 (268)
T COG0171 152 -----GYFT--------K------------YGDGA-VDINPIADLYKTQVYALARHLGIP 185 (268)
T ss_pred -----Ccee--------c------------ccCcc-cChhhhcCCcHHHHHHHHHHcCCC
Confidence 2110 0 01122 236799999999999999999987
No 86
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=98.13 E-value=5.4e-06 Score=84.27 Aligned_cols=139 Identities=21% Similarity=0.146 Sum_probs=95.8
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~ 162 (704)
-+++||+|||+||+|.+..+..+ +++||.|---..++-...+.+++..+|+....+..+..
T Consensus 61 ~kiaVA~SGG~DSsas~iilR~~-------------------g~~v~p~t~~Lp~~ir~n~~~l~~~lg~~p~yveedl~ 121 (255)
T COG1365 61 PKIAVAYSGGVDSSASAIILRWA-------------------GFTVDPGTAILPDHIRRNKEELETLLGEVPEYVEEDLE 121 (255)
T ss_pred ceEEEEecCCcchHHHHHHHHhh-------------------ceeeccccccCCHHHhHHHHHHHHHHccCHHHHHHHHH
Confidence 68999999999999988877432 46888885433445556677888889987766543322
Q ss_pred CC---C-CCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCcccccccccccccccccc
Q 005288 163 DG---R-PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238 (704)
Q Consensus 163 ~~---~-~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~ 238 (704)
.. . ...-.+|-.|..+-.......+++.+++++++|.-+ ..|+| .+.
T Consensus 122 ~i~kGalnGRfhpCGRCh~~I~~~V~~k~re~di~~vafGDlL-----------s~G~~-----svy------------- 172 (255)
T COG1365 122 DIEKGALNGRFHPCGRCHSMIENAVMDKARELDIDVVAFGDLL-----------STGYG-----SVY------------- 172 (255)
T ss_pred HHHhhhccCCCCCcchHHHHHHHHHHHHHHhcCCeEEEEcccc-----------ccccc-----cee-------------
Confidence 11 0 112368888888888888899999999999999533 12221 221
Q ss_pred cccccCCCeEEEee-CCCCCHHHHHHHHHhCCCce
Q 005288 239 HDDLKNHSILLVRP-LLDFSKDDMYKICQGGNRDW 272 (704)
Q Consensus 239 ~~~~~~~~i~IIRP-LL~lsK~EIr~y~~~~gLp~ 272 (704)
.+++-+.+-=| ++.++|+|++.++..+|+..
T Consensus 173 ---~eD~i~rlnlPAflAltK~Elr~il~~~~~e~ 204 (255)
T COG1365 173 ---REDGIFRLNLPAFLALTKDELRSILKWNGYEL 204 (255)
T ss_pred ---ccCCEEEEccHHHHhhCcHHHHHHHHhcCccc
Confidence 23333334344 56799999999999999755
No 87
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=98.00 E-value=0.00018 Score=74.45 Aligned_cols=138 Identities=12% Similarity=0.070 Sum_probs=89.4
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCC----cHHHHHHHHHHHHhcCCeEEEEEc
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE----SKEEANIVSHRVSDMGIRCEIVRC 159 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~e----S~~Eae~V~kl~~~LGIp~~Iv~~ 159 (704)
|+++.+|||+||+.+++.+.+. + ++.+++.-.....+ .....+.++..|+.+|||++....
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~----~-----------~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~ 66 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE----H-----------EVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYT 66 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc----C-----------eeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEc
Confidence 6899999999999999977542 1 34444322222111 122446788899999999987765
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccccccccccccc
Q 005288 160 DWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239 (704)
Q Consensus 160 ~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~ 239 (704)
++. .++ ..+-|.+..++.|++.|++|....+--.+..-+++...
T Consensus 67 ~~~--------~e~-----~~~~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~vc~~~----------------------- 110 (222)
T TIGR00289 67 SGE--------EEK-----EVEDLAGQLGELDVEALCIGAIESNYQKSRIDKVCREL----------------------- 110 (222)
T ss_pred CCc--------hhH-----HHHHHHHHHHHcCCCEEEECccccHHHHHHHHHHHHHc-----------------------
Confidence 321 111 11224444567799999999987654444444444433
Q ss_pred ccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCC
Q 005288 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNR 279 (704)
Q Consensus 240 ~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~ 279 (704)
++..+-||...+..++.++. +.|+..+.-..+.
T Consensus 111 ------gl~~~~PLW~~d~~~l~e~i-~~Gf~aiIv~v~~ 143 (222)
T TIGR00289 111 ------GLKSIAPLWHADPEKLMYEV-AEKFEVIIVSVSA 143 (222)
T ss_pred ------CCEEeccccCCCHHHHHHHH-HcCCeEEEEEEcc
Confidence 35578899999999888765 7888777655543
No 88
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=97.95 E-value=0.00011 Score=73.94 Aligned_cols=137 Identities=13% Similarity=0.181 Sum_probs=91.3
Q ss_pred ChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccC--------
Q 005288 92 GPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD-------- 163 (704)
Q Consensus 92 GvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~-------- 163 (704)
|.||+||++|+.+.. .++.+++||+|+ +-++-.+++.++++++|++++++..+...
T Consensus 2 ~~~s~Vll~L~~~~~--------------~~~~vifvDTg~--~FpET~~~~d~~~~~~~l~i~~~~~~~~~~~~~~~~~ 65 (191)
T TIGR02055 2 GAEDVVLVDLAAKVR--------------PDVKVFFLDTGR--LFKETYETIDQVRERYDILIDVLSPPPLTVEEQVKEY 65 (191)
T ss_pred ChHHHHHHHHHHhcC--------------CCCcEEEecCCC--CCHHHHHHHHHHHHHhCCceEEEcCCcccHHHHHHHc
Confidence 889999999997652 135689999998 66778889999999999998888543210
Q ss_pred CCCC-CCC-hHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccccccccccccccc
Q 005288 164 GRPK-QGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDD 241 (704)
Q Consensus 164 ~~~~-~gn-iEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~~~ 241 (704)
+.+. ..+ ....|+..+-+-|.++.++ .+.+++|--.++-.... . ++... .
T Consensus 66 G~~~~~~~~~~~cc~~~K~~Pl~~~l~~--~~~~i~G~Rr~Es~~R~-------~-------~~~~~------------~ 117 (191)
T TIGR02055 66 GLNLFYRSVPHECCGIRKVEPLKRALAG--VSAWITGLRRDQSPTRA-------Q-------APFLE------------I 117 (191)
T ss_pred CcccccccchHHHHHHHhHHHHHHHHhc--CCEEEEEeccccCchhc-------C-------Cceee------------e
Confidence 1110 011 3344555555556666654 56778887777643211 0 11100 0
Q ss_pred ccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005288 242 LKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (704)
Q Consensus 242 ~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (704)
....++.-+.||++.+..||.+|..++|||+
T Consensus 118 ~~~~~~~~~~Pi~~Wt~~dVw~Yi~~~~lp~ 148 (191)
T TIGR02055 118 DEAFGLVKINPLADWTSEDVWEYIADNELPY 148 (191)
T ss_pred cCCCCeEEEEecccCCHHHHHHHHHHcCCCC
Confidence 0112345689999999999999999999998
No 89
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=97.55 E-value=0.00023 Score=82.87 Aligned_cols=131 Identities=15% Similarity=0.144 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHH
Q 005288 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142 (704)
Q Consensus 63 ~~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~ 142 (704)
.+.+++.+.+.++..+ ..+.+|.|.+|||.||++++.++.+....... ...+...+..++| |+.+ ..|...
T Consensus 207 ~~~lr~~L~~aV~~rl-~sdvpvgv~LSGGLDSSlIaala~~~~~~~~~----~~~~~~~l~tfsi--g~~~--~~D~~~ 277 (578)
T PLN02549 207 PLVLREAFEKAVIKRL-MTDVPFGVLLSGGLDSSLVASIAARHLAETKA----ARQWGQQLHSFCV--GLEG--SPDLKA 277 (578)
T ss_pred HHHHHHHHHHHHHHHh-ccCCceeEeecCCccHHHHHHHHHHhhhhccc----ccccCCCceEEec--CCCC--CCHHHH
Confidence 4556666666666543 34568999999999999999998765322100 0001113444444 5532 347788
Q ss_pred HHHHHHhcCCeEEEEEccccCCCCCCCChHHHHH------------HHHHHHHHHHHHHcCCCEeecccccchhH
Q 005288 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAAR------------DMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (704)
Q Consensus 143 V~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR------------~~RY~~L~~~A~e~G~~~LatGHhaDDqa 205 (704)
+++.++.+|.+|+.+.++..... .++++..+ .+-.-++.+.+++.|+.+|++|..+|+..
T Consensus 278 Ar~vA~~lg~~h~ev~~~~~e~~---~~l~~~i~~le~~dp~~~~~s~p~yll~r~a~~~gvkVvLsGeGaDElF 349 (578)
T PLN02549 278 AREVADYLGTVHHEFHFTVQEGI---DAIEDVIYHLETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIF 349 (578)
T ss_pred HHHHHHHhCCCCeEEEEChHHHH---HHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhcCCEEEEecCchHhhh
Confidence 99999999999988876532110 01111111 11123467788889999999999999973
No 90
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.51 E-value=0.0019 Score=73.48 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=96.1
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccc
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~ 161 (704)
+++++++.|||.|| ||++|+.+.. ..+-++++|+|. .-++-.+++.++.+++|+++++..-+.
T Consensus 115 ~~~iavasSG~eds-vLlhl~~~~~--------------~~ipV~flDTG~--lFpETy~~~d~v~~~ygl~l~~~~p~~ 177 (463)
T TIGR00424 115 GNDIAIAFSGAEDV-ALIEYAHLTG--------------RPFRVFSLDTGR--LNPETYRFFDAVEKQYGIRIEYMFPDA 177 (463)
T ss_pred CCCEEEEeccHHHH-HHHHHHHHhC--------------CCCcEEEecCCC--CCHHHHHHHHHHHHHhCCceEEECCCc
Confidence 35799999988776 5778776531 135689999997 567778888999999999998763321
Q ss_pred c--------CCCCC--CCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccccc
Q 005288 162 L--------DGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231 (704)
Q Consensus 162 ~--------~~~~~--~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf 231 (704)
. .+... ..+....|+..+-+-|.++.+. ++..++|--.++-.-|- +.++... .
T Consensus 178 ~~~~~~~~~~G~~~~~~~~~~~CC~irKVePL~raL~~--~~awitG~Rr~Qs~~tR-------------a~~~~ve-~- 240 (463)
T TIGR00424 178 VEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG--LKAWITGQRKDQSPGTR-------------SEIPVVQ-V- 240 (463)
T ss_pred chHHHHHHhcCcccCCcCChHHHhhHHhHHHHHHHHHh--CCcEEeeeccccCcccc-------------ccCCccc-c-
Confidence 0 01000 1134455666666667777764 46788886655422010 1122110 0
Q ss_pred cccccccccc--ccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005288 232 SSYAYSCHDD--LKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (704)
Q Consensus 232 ~~~~~~~~~~--~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (704)
+...+. ...+++.-+-||++++.+||..|..+++|||
T Consensus 241 ----d~~~~~~~~~~~~~iKvnPLa~Wt~~dVw~Yi~~~~LP~ 279 (463)
T TIGR00424 241 ----DPVFEGLDGGVGSLVKWNPVANVEGKDVWNFLRTMDVPV 279 (463)
T ss_pred ----cccccccccCCCceEEEeecccCCHHHHHHHHHHcCCCC
Confidence 000000 0012356789999999999999999999998
No 91
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=97.39 E-value=0.0051 Score=63.82 Aligned_cols=140 Identities=11% Similarity=0.094 Sum_probs=88.0
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEE-E-EeCCC-CC-CcHHHHHHHHHHHHhcCCeEEEEEc
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI-T-VDHGL-RE-ESKEEANIVSHRVSDMGIRCEIVRC 159 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AV-h-VDHGL-R~-eS~~Eae~V~kl~~~LGIp~~Iv~~ 159 (704)
|+++-+|||+||+.+++.+.+. . ++.++ + +..+- |- ...--.+.++..++.+|||++.+..
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~----~-----------~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~ 66 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE----H-----------EVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYT 66 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh----C-----------eeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeec
Confidence 5788999999999999887542 1 22322 2 22221 10 0011236678889999999866432
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccccccccccccc
Q 005288 160 DWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239 (704)
Q Consensus 160 ~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~ 239 (704)
+ +..++. .+-|.+..++.|++.|++|.-..+---+..-+++..
T Consensus 67 ~--------~~~e~~-----~e~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~v~~~------------------------ 109 (223)
T TIGR00290 67 E--------GTEEDE-----VEELKGILHTLDVEAVVFGAIYSEYQKTRIERVCRE------------------------ 109 (223)
T ss_pred C--------CCccHH-----HHHHHHHHHHcCCCEEEECCcccHHHHHHHHHHHHh------------------------
Confidence 1 111111 123445555669999999997765444444444333
Q ss_pred ccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCC
Q 005288 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRS 280 (704)
Q Consensus 240 ~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d 280 (704)
-++..+.||...+..++..=..+.|+..+--..+..
T Consensus 110 -----lgl~~~~PLW~~~~~~ll~e~i~~G~~aiIv~v~a~ 145 (223)
T TIGR00290 110 -----LGLKSFAPLWHRDPEKLMEEFVEEKFEARIIAVAAE 145 (223)
T ss_pred -----cCCEEeccccCCCHHHHHHHHHHcCCeEEEEEEecC
Confidence 345678999999999988888899998887665543
No 92
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=97.29 E-value=0.00062 Score=62.33 Aligned_cols=58 Identities=24% Similarity=0.153 Sum_probs=51.9
Q ss_pred EEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHHhchhcc--ccCHHHHHHH
Q 005288 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS--SCSFKSELQA 306 (704)
Q Consensus 249 IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~~L~pl~--~~~f~~~L~~ 306 (704)
-||||..+++.||..|+..+|+|++.++|.++....|..+|+.|..++ +|++..++.+
T Consensus 3 rIRPL~~v~E~ei~~ya~~~~lp~~~~~CP~~~~a~R~~~k~~L~~LE~~~P~~k~~i~~ 62 (104)
T TIGR00269 3 RIKPLRYIPEKEVVLYAFLNELKVHLDECPYSSLSVRARIRDFLYDLENKKPGVKFSVLR 62 (104)
T ss_pred cccccccCCHHHHHHHHHHcCCCcCCCCCCCCCCCchHHHHHHHHHHHHHCcChHHHHHH
Confidence 489999999999999999999999999999999999999999998886 5777665543
No 93
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=97.27 E-value=0.00078 Score=78.66 Aligned_cols=134 Identities=16% Similarity=0.117 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHH
Q 005288 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143 (704)
Q Consensus 64 ~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V 143 (704)
+++++.+.+.++.. +....+|.+.+|||.||++++.++.+....+. . ....-+..++.+++|. +. . ..|..++
T Consensus 220 ~~lr~~L~~AV~~r-l~sdvpvGv~LSGGLDSSlIaala~~~~~~~~-~-~~~~~~~~~l~tfsig--~~-~-~~D~~~A 292 (586)
T PTZ00077 220 EEIREALEAAVRKR-LMGDVPFGLFLSGGLDSSIVAAIVAKLIKNGE-I-DLSKRGMPKLHSFCIG--LE-G-SPDLKAA 292 (586)
T ss_pred HHHHHHHHHHHHHH-hcCCCceEEEecCCchHHHHHHHHHHhhcccc-c-ccccccCCCceEEEcC--CC-C-CchHHHH
Confidence 44555555555543 34457899999999999999999876532110 0 0000001245666654 32 2 3578889
Q ss_pred HHHHHhcCCeEEEEEccccCCCC---------CCCC-hHHHHHHHHHHHHHHHHHHcCCCEeecccccchhH
Q 005288 144 SHRVSDMGIRCEIVRCDWLDGRP---------KQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (704)
Q Consensus 144 ~kl~~~LGIp~~Iv~~~~~~~~~---------~~gn-iEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqa 205 (704)
++.++.+|.+|+.+.++...... ...+ ....+-. -.-++.+.+++.|+.++++|.-+|.+.
T Consensus 293 r~vA~~lg~~h~~i~~~~~e~~~~l~~~i~~le~~~~~~~~~~~-p~yll~r~a~~~gvkVvLsGeGaDElF 363 (586)
T PTZ00077 293 RKVAEYLGTEHHEFTFTVEEGIDALPDVIYHTETYDVTTIRAST-PMYLLSRRIKALGIKMVLSGEGSDELF 363 (586)
T ss_pred HHHHHHhCCcCcEEEECHHHHHHHHHHHHHHhcCCCCCCcchHH-HHHHHHHHHHhcCCeEEEecCchhhhc
Confidence 99999999999887654321100 0000 0000111 122567788888999999999999863
No 94
>PLN02309 5'-adenylylsulfate reductase
Probab=97.26 E-value=0.0046 Score=70.30 Aligned_cols=153 Identities=17% Similarity=0.184 Sum_probs=95.0
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccc
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~ 161 (704)
+++|+++.|||.|| ||++|+.+.. ..+-++++|+|. .-++-.+++.++.+++|+++++..-+.
T Consensus 110 ~~~ia~~~SG~ed~-vll~l~~~~~--------------~~ipV~flDTG~--lfpETy~~~d~v~~~ygl~i~~~~P~~ 172 (457)
T PLN02309 110 GNDIAIAFSGAEDV-ALIEYAHLTG--------------RPFRVFSLDTGR--LNPETYRLFDAVEKHYGIRIEYMFPDA 172 (457)
T ss_pred CCCEEEEecchHHH-HHHHHHHHhC--------------CCCcEEEecCCC--CCHHHHHHHHHHHHHhCCceEEECCCc
Confidence 36799999977666 6667765431 134589999997 567778889999999999998773221
Q ss_pred cC--------CCCC--CCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccccc
Q 005288 162 LD--------GRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231 (704)
Q Consensus 162 ~~--------~~~~--~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf 231 (704)
.. +... ..+....|+..+-+=|.++.++ ++..++|--.++-..| | +.++....
T Consensus 173 ~~~~~~~~~~g~~~~~~~~~~~Cc~irKVePL~raL~~--~~awitG~Rr~Qs~~~------R-------a~l~~ve~-- 235 (457)
T PLN02309 173 VEVQALVRNKGLFSFYEDGHQECCRVRKVRPLRRALKG--LRAWITGQRKDQSPGT------R-------AEVPVVQV-- 235 (457)
T ss_pred chHHHHHHhcCccccccCChHHhhhhHhHHHHHHHHhh--CCEEEEeeccccCccc------c-------ccCCeeee--
Confidence 10 0000 1123445555556667777765 4688899666552211 0 01111100
Q ss_pred cccccccccc--ccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005288 232 SSYAYSCHDD--LKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (704)
Q Consensus 232 ~~~~~~~~~~--~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (704)
+...+. ...+++.-+.||++++..||.+|.++++|||
T Consensus 236 ----d~~~~~~~~~~~~~lKvnPl~~Wt~~dVw~Yi~~~~lP~ 274 (457)
T PLN02309 236 ----DPVFEGLDGGPGSLVKWNPLANVTGNEVWNFLRTMDVPV 274 (457)
T ss_pred ----cccccccccCCCCeeEEcccccCCHHHHHHHHHHcCCCC
Confidence 000000 0012356789999999999999999999998
No 95
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=97.23 E-value=0.0018 Score=75.91 Aligned_cols=124 Identities=15% Similarity=0.108 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHHHc---CCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHH
Q 005288 62 DMTKYREAFSRRMAMA---GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138 (704)
Q Consensus 62 ~~~~~~e~f~~~i~~~---~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~ 138 (704)
..+++.+++++.+.++ .+..+.+|.+.+|||.||++++.++.+... ..+.++++.+.- ...+
T Consensus 235 ~~~e~~e~l~~~l~~aV~~rl~~d~~vg~~LSGGlDSs~Iaa~~~~~~~-------------~~i~t~s~~~~~--~~~d 299 (628)
T TIGR03108 235 SEADALAELIERLREAVRSRMVADVPLGAFLSGGVDSSAVVALMAGLSD-------------TPVNTCSIAFDD--PAFD 299 (628)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcceEeecCCccHHHHHHHHHHhcC-------------CCCcEEEEecCC--CCCC
Confidence 4556555555554442 244567899999999999999888764311 134566666532 2246
Q ss_pred HHHHHHHHHHhcCCeEEEEEccccCCCC----------CCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhH
Q 005288 139 EANIVSHRVSDMGIRCEIVRCDWLDGRP----------KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (704)
Q Consensus 139 Eae~V~kl~~~LGIp~~Iv~~~~~~~~~----------~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqa 205 (704)
|...++++++.+|++++++.++...... ..++.. -...| ++.+.+++ ++.++++|+-.|...
T Consensus 300 E~~~A~~vA~~~g~~h~~~~~~~~~~~~~~~~~~~~~~P~~~~~---~~~~~-~~~~~a~~-~~kV~LsG~GgDElf 371 (628)
T TIGR03108 300 ESAYARQVAERYGTNHRVETVDPDDFSLVDRLAGLYDEPFADSS---ALPTY-RVCELARK-RVTVALSGDGGDELF 371 (628)
T ss_pred hHHHHHHHHHHhCCCCeEEecCHHHHHHHHHHHHHhCCCCCCch---HHHHH-HHHHHHHC-CCCEEEeccchhhcc
Confidence 8888999999999999988765322100 000000 11122 34455555 699999999888753
No 96
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=97.22 E-value=0.0017 Score=75.30 Aligned_cols=137 Identities=12% Similarity=0.156 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHH
Q 005288 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143 (704)
Q Consensus 64 ~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V 143 (704)
+.+++.+.+.++.. +..+.+|.+.+|||.||++++.++.+..............+...+..++|... . ..|...+
T Consensus 210 ~~lr~~L~~aV~~r-l~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~---~-~~D~~~A 284 (554)
T PRK09431 210 NELRDALEAAVKKR-LMSDVPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLE---G-SPDLKAA 284 (554)
T ss_pred HHHHHHHHHHHHHH-hcCCCceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCC---C-CChHHHH
Confidence 34444455555443 44567899999999999999999876532110000000001124566666543 2 3378889
Q ss_pred HHHHHhcCCeEEEEEccccCCCC---------CCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhH
Q 005288 144 SHRVSDMGIRCEIVRCDWLDGRP---------KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (704)
Q Consensus 144 ~kl~~~LGIp~~Iv~~~~~~~~~---------~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqa 205 (704)
++.++.+|.+|+.+.+....... ...++-...-..-.-++.+.+++.|+.++++|.-+|.+.
T Consensus 285 ~~vA~~lg~~h~~v~~t~~e~~~~l~~vi~~le~~dp~~~~~~~p~yll~~~~~~~gvkvvLsGeGaDElF 355 (554)
T PRK09431 285 REVADHLGTVHHEIHFTVQEGLDALRDVIYHLETYDVTTIRASTPMYLMARKIKAMGIKMVLSGEGADELF 355 (554)
T ss_pred HHHHHHhCCccEEEEeCHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHcCCEEEEecCchhhhh
Confidence 99999999999988764321100 000000000011122356666677899999999888764
No 97
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=97.15 E-value=0.0033 Score=73.50 Aligned_cols=124 Identities=18% Similarity=0.185 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHHHc---CCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCC-CcH
Q 005288 62 DMTKYREAFSRRMAMA---GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-ESK 137 (704)
Q Consensus 62 ~~~~~~e~f~~~i~~~---~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~-eS~ 137 (704)
..+++.+++++.+.++ .+....+|++.+|||.||++++.++.+... ..+.+++|.+.--+ ...
T Consensus 237 ~~~~~~~~l~~~L~~AV~~rl~sd~pvg~~LSGGlDSs~Iaa~~~~~~~-------------~~l~tftigf~~~~~~~~ 303 (589)
T TIGR03104 237 TEADWQDAILEALRLAVKRRLVADVPVGVLLSGGLDSSLIVGLLAEAGV-------------DGLRTFSIGFEDVGGEKG 303 (589)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCceeEEecCCccHHHHHHHHHHhcC-------------CCceEEEEEecCCCCCCC
Confidence 4444444444443332 235567899999999999999988765311 13566666653111 123
Q ss_pred HHHHHHHHHHHhcCCeEEEEEccccCC------------CCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchh
Q 005288 138 EEANIVSHRVSDMGIRCEIVRCDWLDG------------RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (704)
Q Consensus 138 ~Eae~V~kl~~~LGIp~~Iv~~~~~~~------------~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDq 204 (704)
+|..++++.++.+|.+++.+.++.... .|. .+... +-.-++.+.+++ +++++++|+-+|..
T Consensus 304 dE~~~A~~vA~~~g~~h~~i~~~~~~~~~~l~~~v~~~~~P~-~~~~~----~~~~~l~~~a~~-~~kV~LsGeGaDEl 376 (589)
T TIGR03104 304 DEFEYSDIIAERFHTRHHKIRIPNHRVLPALPEAVAAMSEPM-VSHDC----VAFYLLSEEVSK-HVKVVQSGQGADEV 376 (589)
T ss_pred ChHHHHHHHHHHhCCcCeEEEcCHHHHHHHHHHHHHHhCCCC-CCchH----HHHHHHHHHHhC-CCeEEeecCchHhc
Confidence 688899999999999998887643211 010 01111 112245666666 59999999999885
No 98
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=97.04 E-value=0.0089 Score=71.36 Aligned_cols=78 Identities=22% Similarity=0.253 Sum_probs=49.2
Q ss_pred CCCEEEEEEcCChhHHHHHHHH-------HhhhhCCCCCC----------------CCCCCCCCc-EEEEEEeCCCCCCc
Q 005288 81 PHHRIALGVSGGPDSMALCVLT-------AGWKTGGFNQN----------------GEAGEFIDG-LLAITVDHGLREES 136 (704)
Q Consensus 81 ~~~kVlVAVSGGvDSmaLL~LL-------~~~~~~g~~~~----------------~~~~gi~~~-L~AVhVDHGLR~eS 136 (704)
..++++|++|||.||++.+.+. .+....+...+ ....++..+ +++ |-.+-+..|
T Consensus 347 g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~mp~~~ss 424 (700)
T PLN02339 347 GASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFAKRIFYT--VYMGSENSS 424 (700)
T ss_pred CCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhhhcceeEE--EECCCCCCC
Confidence 3578999999999999877664 23222111000 000000001 333 444445567
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEcc
Q 005288 137 KEEANIVSHRVSDMGIRCEIVRCD 160 (704)
Q Consensus 137 ~~Eae~V~kl~~~LGIp~~Iv~~~ 160 (704)
++..+.++++|+.+|+.++.++++
T Consensus 425 ~~t~~~A~~la~~lG~~~~~i~I~ 448 (700)
T PLN02339 425 EETRSRAKQLADEIGSSHLDVKID 448 (700)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCH
Confidence 888888999999999999999887
No 99
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=96.97 E-value=0.005 Score=63.65 Aligned_cols=140 Identities=10% Similarity=0.063 Sum_probs=73.9
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCC--cHHHHHHHHHHHHhcCCeEEEEEccc
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE--SKEEANIVSHRVSDMGIRCEIVRCDW 161 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~e--S~~Eae~V~kl~~~LGIp~~Iv~~~~ 161 (704)
|+++-+|||+||+.+++.+.+- .. ....+-+++++.+.. ..--.+.++..++.+|||+.....+-
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~----~~---------v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g 68 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ----HE---------VVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSG 68 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT-----E---------EEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE--
T ss_pred cEEEEEcCcHHHHHHHHHHHHh----CC---------ccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccC
Confidence 6888999999999998876542 10 112222355543311 11113467778899999998876541
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeeccccc-chhHHHHHHHHhccCCCCCcccccccccccccccccccc
Q 005288 162 LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA-DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240 (704)
Q Consensus 162 ~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHha-DDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~~ 240 (704)
. ..+-. +-|.+..++.+++.++.|... +||- +..-+++..
T Consensus 69 ~-----~~~~~--------~~l~~~l~~~~v~~vv~GdI~~~~~r-~~~e~vc~~------------------------- 109 (218)
T PF01902_consen 69 D-----EEDYV--------EDLKEALKELKVEAVVFGDIDSEYQR-NWVERVCER------------------------- 109 (218)
T ss_dssp ------CCCHH--------HHHHHHHCTC--SEEE--TTS-HHHH-HHHHHHHHH-------------------------
T ss_pred c-----cchhh--------HHHHHHHHHcCCCEEEECcCCcHHHH-HHHHHHHHH-------------------------
Confidence 1 11111 224445567779999999876 4443 333333332
Q ss_pred cccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCC
Q 005288 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNR 279 (704)
Q Consensus 241 ~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~ 279 (704)
-++..+.||...+..++..-.-+.|+..+.-..+.
T Consensus 110 ----lGl~~~~PLW~~d~~~ll~e~i~~Gf~aiIv~V~~ 144 (218)
T PF01902_consen 110 ----LGLEAVFPLWGRDREELLREFIESGFEAIIVKVDA 144 (218)
T ss_dssp ----CT-EEE-TTTT--HHHHHHHHHHTT-EEEEEEEES
T ss_pred ----cCCEEEecccCCCHHHHHHHHHHCCCeEEEEEEec
Confidence 34668999999999988777777788877654443
No 100
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=96.92 E-value=0.0076 Score=64.73 Aligned_cols=152 Identities=15% Similarity=0.144 Sum_probs=95.3
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCe-EEEEEc
Q 005288 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR-CEIVRC 159 (704)
Q Consensus 81 ~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp-~~Iv~~ 159 (704)
..+++++|.|||.|.++.+.+|++ .| .+++|..-|-|. .+|.+.+++-+.+.|-+ +.+.++
T Consensus 4 ~~~~vVLAySGgLDTscil~WLke---qG-----------yeViay~AnvGQ----~edfe~ar~kAlk~Gakk~~~ed~ 65 (412)
T KOG1706|consen 4 SKKSVVLAYSGGLDTSCILAWLKE---QG-----------YEVIAYLANVGQ----KEDFEEARKKALKSGAKKVVVEDV 65 (412)
T ss_pred CCceEEEEecCCcCchhhhHHHHh---cC-----------ceEEEeeccccc----hhhHHHHHHhhhhcCceEEEehhh
Confidence 347899999999999998888765 33 378999999997 55677777877778864 555555
Q ss_pred cccCCC----CC-CC-C-hH-------HHHHHHHHHHHHHHHHHcCCCEeecccc--cchhHHHHHHHHhccCCCCCccc
Q 005288 160 DWLDGR----PK-QG-H-LQ-------EAARDMRYRLFQKVCIQHQIGVLLIAHH--ADDQAELFILRLSRNSGVLGLAG 223 (704)
Q Consensus 160 ~~~~~~----~~-~g-n-iE-------e~AR~~RY~~L~~~A~e~G~~~LatGHh--aDDqaET~LmrL~RGsGl~GLaG 223 (704)
...+.+ |. +. . .| ..||..--...-++|++.|+.++.-|.+ .+||+--- |+-
T Consensus 66 ~~eFvedfi~Pa~qs~a~YEd~YLLGTSlaRp~ia~~qv~va~~eg~~aVsHGcTGKGNDQvrFE------------Lt~ 133 (412)
T KOG1706|consen 66 REEFVEDFIWPALQSSALYEDRYLLGTSLARPVIAKAQVDVAQREGAKAVSHGCTGKGNDQVRFE------------LTF 133 (412)
T ss_pred hHHHHhhcchhhhhhcchhhceeeeccccccchhhhhhhhHHhhcCceeeecccccCCCcceeee------------eee
Confidence 433211 10 00 0 01 1234443444567888888888766643 24544210 100
Q ss_pred ccccccccccccccccccccCCCeEEEeeCCC-------CCHHHHHHHHHhCCCceeeCCCCC
Q 005288 224 MAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD-------FSKDDMYKICQGGNRDWVEDPTNR 279 (704)
Q Consensus 224 m~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~-------lsK~EIr~y~~~~gLp~veDpSN~ 279 (704)
. .-...+++|-|... --++++.+|++++|||.---|-|.
T Consensus 134 y-----------------sl~P~~kviapwrmp~f~~rf~Gr~Dl~eYakq~giPvpvT~k~p 179 (412)
T KOG1706|consen 134 Y-----------------SLKPDVKVIAPWRMPEFYERFKGRKDLLEYAKQHGIPVPVTPKNP 179 (412)
T ss_pred e-----------------ccCCcceeeccccchHHHHhhcCchHHHHHHHhcCCCccccCCCC
Confidence 0 01234677888775 346899999999999976544443
No 101
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=96.73 E-value=0.0092 Score=69.25 Aligned_cols=120 Identities=15% Similarity=0.079 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEE-EEEEeCCCCCCcHHHHH
Q 005288 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLL-AITVDHGLREESKEEAN 141 (704)
Q Consensus 63 ~~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~-AVhVDHGLR~eS~~Eae 141 (704)
.+.+++.+...+...+ .....|.+.+|||+||++++.++++..... .. -.+|+..- ....|..
T Consensus 212 ~~~l~~~l~~sV~~r~-~advpvg~~lSGGlDSS~Iaa~a~~~~~~~-------------~~~~fsvg~~~--~~~~D~~ 275 (542)
T COG0367 212 AEHLRSLLEDAVKRRL-VADVPVGVFLSGGLDSSLIAAIAAEELGKE-------------GKTTFTVGFED--SDSPDAK 275 (542)
T ss_pred HHHHHHHHHHHHHHHh-ccCCcEEEEeCCCccHHHHHHHHHHhcccc-------------ceeeeEeecCC--CCCchHH
Confidence 4455555555555433 345789999999999999999998753221 12 24565542 2235889
Q ss_pred HHHHHHHhcCCeEEEEEccccCCCCCCCChHHHHHH--------------HHHHHHHHHHHHcCCCEeecccccchhH
Q 005288 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD--------------MRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (704)
Q Consensus 142 ~V~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~--------------~RY~~L~~~A~e~G~~~LatGHhaDDqa 205 (704)
.+++.++.+|.+++...+...+ +....+. +=.-++.+.+++.|+.+++.|.-+|.+.
T Consensus 276 ~a~~~A~~lg~~h~~~~~~~~e-------~~~~~~~vv~~~~~p~~~~~~~ply~~~~~a~~~g~kVvLSGeGADElF 346 (542)
T COG0367 276 YARAVAKFLGTPHHEIILTNEE-------LLNALPEVVKALDTPGGMAASIPLYLLSRKARAEGEKVVLSGEGADELF 346 (542)
T ss_pred HHHHHHHHhCCCcEEEeecHHH-------HHHHHHHHHhhcCCCCcccchhHHHHHHHhhhhcCcEEeecCccHHHHh
Confidence 9999999999988887654322 1111111 1123567888889999999999988764
No 102
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=96.44 E-value=0.084 Score=54.75 Aligned_cols=135 Identities=12% Similarity=0.136 Sum_probs=84.2
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCc----HHHHHHHHHHHHhcCCeEEEEEc
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES----KEEANIVSHRVSDMGIRCEIVRC 159 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS----~~Eae~V~kl~~~LGIp~~Iv~~ 159 (704)
|+++-+|||+||.-+++++.+ .|. ++.++..=+--+++| ..-.+.+...++.+|+|+.....
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~---~G~-----------eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~ 67 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALE---EGH-----------EVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDT 67 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHH---cCC-----------eeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEec
Confidence 578889999999888887643 332 343333222212211 12345677788999999877654
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccccccccccccc
Q 005288 160 DWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239 (704)
Q Consensus 160 ~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~ 239 (704)
+... ....+ -+.+..+..+++.|..|--+.+-=-+-+-|+++-.
T Consensus 68 ~g~~----e~eve---------~L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~l----------------------- 111 (223)
T COG2102 68 SGEE----EREVE---------ELKEALRRLKVDGIVAGAIASEYQKERVERLCEEL----------------------- 111 (223)
T ss_pred Cccc----hhhHH---------HHHHHHHhCcccEEEEchhhhHHHHHHHHHHHHHh-----------------------
Confidence 4311 00122 34455556668999999877653333444555433
Q ss_pred ccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceee
Q 005288 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVE 274 (704)
Q Consensus 240 ~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ve 274 (704)
++..+.||...+-.++..-.-..|+.++.
T Consensus 112 ------Gl~~~~PLWg~d~~ell~e~~~~Gf~~~I 140 (223)
T COG2102 112 ------GLKVYAPLWGRDPEELLEEMVEAGFEAII 140 (223)
T ss_pred ------CCEEeecccCCCHHHHHHHHHHcCCeEEE
Confidence 45678999999988888877788877654
No 103
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=95.96 E-value=0.013 Score=63.92 Aligned_cols=170 Identities=15% Similarity=0.151 Sum_probs=92.9
Q ss_pred CCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHh-cCCeE--EE
Q 005288 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSD-MGIRC--EI 156 (704)
Q Consensus 80 ~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~-LGIp~--~I 156 (704)
..-.+|.|++|||+||.++|+|+.+..++.. . .++.+.|+|.-- .=..-..+|++.... .++.- .-
T Consensus 25 ~~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~--------~-~~i~VlfiD~E~--QYs~TidyV~em~~~~~dv~~~~yW 93 (407)
T COG3969 25 NTFPRVCVSFSGGKDSGLMLHLVAEVARENG--------R-DKISVLFIDWEA--QYSCTIDYVQEMRESYHDVIETFYW 93 (407)
T ss_pred hcCCeEEEEecCCCchhHHHHHHHHHHHHhC--------C-CceEEEEEcchh--hhhhHHHHHHHHHhcccCccccceE
Confidence 4458899999999999999999999877642 1 258889999732 112345677776553 44311 11
Q ss_pred --EEc--------------cccCCCCC---CCChHHHH-------HHHHH-----HH---HHHH-HHHcCCCEeeccccc
Q 005288 157 --VRC--------------DWLDGRPK---QGHLQEAA-------RDMRY-----RL---FQKV-CIQHQIGVLLIAHHA 201 (704)
Q Consensus 157 --v~~--------------~~~~~~~~---~gniEe~A-------R~~RY-----~~---L~~~-A~e~G~~~LatGHha 201 (704)
+.+ .|..+.+. ...++..+ --.|| +| |.++ ++++++.++++|-.+
T Consensus 94 vcLPl~t~na~S~~qp~W~~Wep~~e~~WVR~~P~~~ii~d~~~F~Fyr~~M~feeFv~~F~~Wl~~~~~~ta~LvGiRa 173 (407)
T COG3969 94 VCLPLTTQNALSQYQPEWICWEPGTEVDWVRQPPEQVAITDPAFFPFYRYGMTFEEFVPAFAAWLSQKRPATAVLVGIRA 173 (407)
T ss_pred EEeehhcccchhhcCceeecCCCCCccccccCCchhccccCCCcccceeccccHHHHHHHHHHHHhccCCceEEEEeecc
Confidence 111 11111000 00122211 01122 22 3333 344556889999988
Q ss_pred chhHHHHHHHHhccCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005288 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (704)
Q Consensus 202 DDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (704)
|.-.-.+. -+.|-.... --++ + ........++.+.-+-|+.+..=++|..+-.+++.+|
T Consensus 174 dESlNRf~-ai~~~~k~~---~~~~----~----pWtt~~~~~~~~~~~yPiYDW~~eDiW~~~Ak~~~~y 232 (407)
T COG3969 174 DESLNRFN-AIARKEKLR---FADD----K----PWTTRIFPNGHVWTFYPIYDWKVEDIWTANAKFSYAY 232 (407)
T ss_pred hhhHHHHH-HHHHhhhcc---cCCC----C----CceeeecCCCceEEEEecccchHHHHHHHHHhcCCcc
Confidence 87654442 122211111 0000 0 0001122345577889999999999999888887665
No 104
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=95.10 E-value=0.33 Score=44.00 Aligned_cols=102 Identities=14% Similarity=0.201 Sum_probs=68.3
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCC----CcHHHHHHHHHHHHhcCCeEEEEEc
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE----ESKEEANIVSHRVSDMGIRCEIVRC 159 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~----eS~~Eae~V~kl~~~LGIp~~Iv~~ 159 (704)
+|+|+++|+..|--++.+....... .+..++.+||..+... ...+..+.+.+.+++.+++..++.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~----------~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~- 69 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADR----------LKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLP- 69 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHH----------hCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEEEEe-
Confidence 5899999999999988877665443 1237899999876431 122334456667778888654331
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccC
Q 005288 160 DWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNS 216 (704)
Q Consensus 160 ~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGs 216 (704)
.+++. +.+.+++++++++.|++|+|..-- +-++..|+
T Consensus 70 --------~~~~~--------~~I~~~~~~~~~dllviG~~~~~~----~~~~~~Gs 106 (124)
T cd01987 70 --------GDDVA--------EAIVEFAREHNVTQIVVGKSRRSR----WRELFRGS 106 (124)
T ss_pred --------CCcHH--------HHHHHHHHHcCCCEEEeCCCCCch----HHHHhccc
Confidence 12222 357778999999999999997643 33445554
No 105
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=93.06 E-value=0.32 Score=55.01 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.9
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhC
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTG 108 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~ 108 (704)
.+|.|-+|||+|||++|.|++.....
T Consensus 251 s~VcVlfSGGvDs~vvA~l~h~~vp~ 276 (520)
T KOG0573|consen 251 SNVCVLFSGGVDSTVVAVLAHYVVPE 276 (520)
T ss_pred CcEEEEecCCchHHHHHHHHHhhcCC
Confidence 67999999999999999999876443
No 106
>PF10288 DUF2392: Protein of unknown function (DUF2392); InterPro: IPR019407 Cytoplasmic thiouridylase is a highly conserved complex responsible for the 2-thiolation of cytosolic tRNAs []. Inactivation of this complex leads to a loss of thiolation on tRNAs, decreased viability and aberrant cell development. This entry represents the second subunit of this complex.
Probab=92.55 E-value=0.46 Score=43.73 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=40.5
Q ss_pred HHHHHHHHhccCCCCCccccccccccccccccccccccc--CCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCC
Q 005288 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK--NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDP 276 (704)
Q Consensus 205 aET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~~~~~--~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDp 276 (704)
|..+|..++.|.|.. ++..... ... ..++.++|||+++.++||..|++-.+++.+.-+
T Consensus 2 A~~~Ls~~~kGRG~s----l~~~~~~----------~~~~~~~~i~~~rPLRd~l~kEi~~Y~~~~~l~~~~~~ 61 (107)
T PF10288_consen 2 AIKTLSNVAKGRGFS----LPWQVSD----------GDSRNGWDIKIIRPLRDLLKKEIAFYNRLCGLESVLVP 61 (107)
T ss_pred HHHHHHHHHcCCcee----cchHHhC----------CcccCCCCceEEeehHhCCHHHHHHHHHHhCcchhhcc
Confidence 456677778887643 2221111 112 368999999999999999999999999844433
No 107
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=92.54 E-value=1.6 Score=49.48 Aligned_cols=131 Identities=17% Similarity=0.131 Sum_probs=81.5
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHh-hhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcH
Q 005288 59 YLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAG-WKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137 (704)
Q Consensus 59 ~~~~~~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~-~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~ 137 (704)
-|+....+++.+.+.+.+.. =...++.|-+|||.||+..+..+.+ +.+... ++ +.+++.+- -|+- .|
T Consensus 203 ~p~d~~~~r~~~~~aV~KRL-M~d~p~GvLLSGGLDSSLvAsia~R~lk~~~~-----~~--~~~lhsFa--IGle-~S- 270 (543)
T KOG0571|consen 203 TPLDYLALRHTLEKAVRKRL-MTDVPFGVLLSGGLDSSLVASIAARELKKAQA-----AR--GSKLHSFA--IGLE-DS- 270 (543)
T ss_pred CcccHHHHHHHHHHHHHHHh-hccCceeEEeeCCchHHHHHHHHHHHHHHhhh-----hc--CCCceEEE--ecCC-CC-
Confidence 45666667777777766532 2346799999999999988776544 322110 11 12454433 4663 33
Q ss_pred HHHHHHHHHHHhcCCeEEEEEccccCCCCCCCChHHH-------------HHHHHHHHHHHHHHHcCCCEeecccccchh
Q 005288 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEA-------------ARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (704)
Q Consensus 138 ~Eae~V~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~-------------AR~~RY~~L~~~A~e~G~~~LatGHhaDDq 204 (704)
-|...+++.++-+|..|+...+....+-. .+++. |..- .-++.+..++.|...|+-|--.|..
T Consensus 271 PDL~aarkVAd~igt~Hhe~~ft~qegid---al~eVI~hLETYDvttIRastp-myLlsr~Ikk~gvkmvlSGEGsDEi 346 (543)
T KOG0571|consen 271 PDLLAARKVADFIGTIHHEHTFTIQEGID---ALDEVIYHLETYDVTTIRASTP-MYLLSRKIKKLGVKMVLSGEGSDEI 346 (543)
T ss_pred hhHHHHHHHHHHhCCcceEEEEcHHHHHH---HHHHHheeeeccccceEecCCc-hHHHHHHHHhcceEEEEecCCchhh
Confidence 36777899999999999988765432110 01110 1111 2357788889999999999888875
Q ss_pred H
Q 005288 205 A 205 (704)
Q Consensus 205 a 205 (704)
.
T Consensus 347 f 347 (543)
T KOG0571|consen 347 F 347 (543)
T ss_pred h
Confidence 4
No 108
>PRK10490 sensor protein KdpD; Provisional
Probab=92.00 E-value=1.3 Score=54.65 Aligned_cols=98 Identities=12% Similarity=0.122 Sum_probs=67.6
Q ss_pred CCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCC-CCCcHHHH---HHHHHHHHhcCCeE
Q 005288 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL-REESKEEA---NIVSHRVSDMGIRC 154 (704)
Q Consensus 79 l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGL-R~eS~~Ea---e~V~kl~~~LGIp~ 154 (704)
+.-.++|+|++||++.|-.|.--..++... ++-+++++||+.+- ...+.++. ....++|+++|.+.
T Consensus 247 ~~~~eriLV~v~~~~~~~~lIr~~~rlA~~----------~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~ 316 (895)
T PRK10490 247 WHTRDAILLCIGHNTGSEKLVRTAARLAAR----------LGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAET 316 (895)
T ss_pred CCcCCeEEEEECCCcchHHHHHHHHHHHHh----------cCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEE
Confidence 345688999999999998887665555433 23478999999762 22223222 23345899999997
Q ss_pred EEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccch
Q 005288 155 EIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (704)
Q Consensus 155 ~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDD 203 (704)
+++.- .++. +.+.++|+++|++.|++|+...-
T Consensus 317 ~~~~~---------~dva--------~~i~~~A~~~~vt~IViG~s~~~ 348 (895)
T PRK10490 317 ATLSD---------PAEE--------KAVLRYAREHNLGKIIIGRRASR 348 (895)
T ss_pred EEEeC---------CCHH--------HHHHHHHHHhCCCEEEECCCCCC
Confidence 66531 1222 34678999999999999998654
No 109
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=91.81 E-value=2.7 Score=36.95 Aligned_cols=95 Identities=14% Similarity=0.150 Sum_probs=60.6
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCC--------cHHHHHHHHHHH---HhcCC
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE--------SKEEANIVSHRV---SDMGI 152 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~e--------S~~Eae~V~kl~---~~LGI 152 (704)
+|+|+++|+..+-.++..+..+.... +.+++++||....... ..+..+...++. ...|+
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~----------~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 70 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRL----------GAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGV 70 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhc----------CCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 58999999999999888777664431 2478999997654211 112222233333 34577
Q ss_pred eEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchh
Q 005288 153 RCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (704)
Q Consensus 153 p~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDq 204 (704)
+++..-. .++. .+.+.+.+++.+++.|++|.+....
T Consensus 71 ~~~~~~~--------~~~~--------~~~i~~~~~~~~~dlvvig~~~~~~ 106 (130)
T cd00293 71 KVETVVL--------EGDP--------AEAILEAAEELGADLIVMGSRGRSG 106 (130)
T ss_pred ceEEEEe--------cCCC--------HHHHHHHHHHcCCCEEEEcCCCCCc
Confidence 7654432 1222 2457788999999999999987653
No 110
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=91.28 E-value=3 Score=37.63 Aligned_cols=96 Identities=10% Similarity=0.141 Sum_probs=60.9
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCC-----------cHHHHHHHHHHHHhcCC
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE-----------SKEEANIVSHRVSDMGI 152 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~e-----------S~~Eae~V~kl~~~LGI 152 (704)
+|+|++.|..+|..++.....+... .+.+++++||-...... ..+..+.+.+.+++.|+
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~----------~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 70 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA----------QNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGV 70 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc----------CCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCC
Confidence 5899999999998888777665432 12378899985432211 12233445556667788
Q ss_pred eEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchh
Q 005288 153 RCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (704)
Q Consensus 153 p~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDq 204 (704)
+....... .+++- +.+.+++++++++.|++|++....
T Consensus 71 ~~~~~~~~-------~~~~~--------~~I~~~a~~~~~dlIV~G~~~~~~ 107 (132)
T cd01988 71 PVHTIIRI-------DHDIA--------SGILRTAKERQADLIIMGWHGSTS 107 (132)
T ss_pred ceEEEEEe-------cCCHH--------HHHHHHHHhcCCCEEEEecCCCCC
Confidence 76544321 12211 236678889999999999996553
No 111
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=90.88 E-value=5.2 Score=48.74 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=75.5
Q ss_pred CCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCC-CCcHHHHHH---HHHHHHhcCCeEE
Q 005288 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI---VSHRVSDMGIRCE 155 (704)
Q Consensus 80 ~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR-~eS~~Eae~---V~kl~~~LGIp~~ 155 (704)
.-.++|+|++||++.|--+.--..++... +....+++|||.+=. ..++.+... ..++|+++|-.+.
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~----------~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~ 315 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASR----------LHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIV 315 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHH----------hCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEE
Confidence 34589999999999999887666555432 223689999998743 233444444 5558999999888
Q ss_pred EEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhH-----HHHHHHHhccC
Q 005288 156 IVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA-----ELFILRLSRNS 216 (704)
Q Consensus 156 Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqa-----ET~LmrL~RGs 216 (704)
++.-. ++. + .+.++|+++++..|++|.+..-.- +.+.-+|.+..
T Consensus 316 ~l~~~---------dv~---~-----~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~l~~~L~~~~ 364 (890)
T COG2205 316 TLYGG---------DVA---K-----AIARYAREHNATKIVIGRSRRSRWRRLFKGSLADRLAREA 364 (890)
T ss_pred EEeCC---------cHH---H-----HHHHHHHHcCCeeEEeCCCcchHHHHHhcccHHHHHHhcC
Confidence 77421 222 1 367889999999999999876433 34444555544
No 112
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=89.45 E-value=3 Score=38.82 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=56.5
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCC--CC-c-------------HHHH----HHH
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR--EE-S-------------KEEA----NIV 143 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR--~e-S-------------~~Ea----e~V 143 (704)
+|+||+.|...|..++....+.... .+.+++++||-.... .. . .++. +.+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~----------~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 70 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLAT----------KGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPY 70 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccC----------CCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999998887665332 234788999853211 00 0 0111 112
Q ss_pred HHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccch
Q 005288 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (704)
Q Consensus 144 ~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDD 203 (704)
.+.|+..|++....... .+++. +.+.++|++.+++.|++|.|..-
T Consensus 71 ~~~~~~~~~~~~~~~~~-------g~~~~--------~~I~~~a~~~~~dlIV~Gs~g~~ 115 (146)
T cd01989 71 RCFCSRKGVQCEDVVLE-------DDDVA--------KAIVEYVADHGITKLVMGASSDN 115 (146)
T ss_pred HHHHhhcCCeEEEEEEe-------CCcHH--------HHHHHHHHHcCCCEEEEeccCCC
Confidence 22344456665544321 11222 23567789999999999988653
No 113
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=86.61 E-value=11 Score=38.16 Aligned_cols=117 Identities=12% Similarity=0.061 Sum_probs=77.9
Q ss_pred EEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcH--HHHHHHHHHHHhcCCeEEEEEcccc--
Q 005288 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK--EEANIVSHRVSDMGIRCEIVRCDWL-- 162 (704)
Q Consensus 87 VAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~--~Eae~V~kl~~~LGIp~~Iv~~~~~-- 162 (704)
+=+==|+||++.+..|.+ .| .++++.+.|..+.|... .=.+.++++++.+||++.+.+.+..
T Consensus 3 LH~CCaPCs~~~~~~L~~---~g-----------~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~Y~~~~w 68 (176)
T PF02677_consen 3 LHICCAPCSTYPLERLRE---EG-----------FDVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIEGDYDPEEW 68 (176)
T ss_pred eeecCccccHHHHHHHHH---CC-----------CCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEecCCCHHHH
Confidence 334458999988777653 23 37899999999976432 2245678899999999987654321
Q ss_pred -------CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeeccc----c-cchhHHHHHHHHhccCC
Q 005288 163 -------DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH----H-ADDQAELFILRLSRNSG 217 (704)
Q Consensus 163 -------~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGH----h-aDDqaET~LmrL~RGsG 217 (704)
...+..|.-+..|=.+|.+.-.+.|+++|+++..|-= | --|++..+-.++..-.|
T Consensus 69 ~~~v~~~e~epE~g~RC~~Cy~~RL~~tA~~A~e~gfd~FtTTL~~Sp~k~~~~I~~iG~~~~~~~g 135 (176)
T PF02677_consen 69 LRAVKGLEDEPEGGKRCRVCYDLRLEKTAQYAKELGFDYFTTTLLISPYKNHELINEIGERLAKEYG 135 (176)
T ss_pred HHHHhhCccCCccCchhHHHHHHHHHHHHHHHHHcCCCEEEccccCcCccCHHHHHHHHHHHHHhhC
Confidence 0112334567777788988889999999998765532 2 22566666555555443
No 114
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=84.92 E-value=10 Score=35.30 Aligned_cols=94 Identities=14% Similarity=0.194 Sum_probs=55.1
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCC-------C-cHH----HH----HHHHHH
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-------E-SKE----EA----NIVSHR 146 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~-------e-S~~----Ea----e~V~kl 146 (704)
++|++|+-|...|..++.....+.+. .+.+++++||+..... . ..+ .. +.++++
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~~----------~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 73 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMARP----------YNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTEL 73 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHHh----------hCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 68999999999998887766555432 1237889999532100 0 000 01 223334
Q ss_pred HHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeeccccc
Q 005288 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (704)
Q Consensus 147 ~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHha 201 (704)
++..|++...... + .|++. +.+.+.|+++++|.|++|+|.
T Consensus 74 ~~~~~~~~~~~~~-~------~G~p~--------~~I~~~a~~~~~DLIV~Gs~~ 113 (144)
T PRK15118 74 STNAGYPITETLS-G------SGDLG--------QVLVDAIKKYDMDLVVCGHHQ 113 (144)
T ss_pred HHhCCCCceEEEE-E------ecCHH--------HHHHHHHHHhCCCEEEEeCcc
Confidence 4556665422111 1 12221 235567899999999999995
No 115
>PRK09982 universal stress protein UspD; Provisional
Probab=84.55 E-value=14 Score=34.87 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=28.4
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeC
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH 130 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDH 130 (704)
++|+||+.|+.+|..++.....+.+. .+.+++++||-.
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~~----------~~a~l~llhV~~ 41 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELARH----------NDAHLTLIHIDD 41 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHHH----------hCCeEEEEEEcc
Confidence 68999999999998888766655432 123788999853
No 116
>PRK10116 universal stress protein UspC; Provisional
Probab=84.10 E-value=19 Score=33.20 Aligned_cols=101 Identities=16% Similarity=0.197 Sum_probs=59.1
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCC---CCcH---HH---------HHHHHHHH
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR---EESK---EE---------ANIVSHRV 147 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR---~eS~---~E---------ae~V~kl~ 147 (704)
++|++++-|..+|.-++.....+.+. ++.+++++|+=.... .... ++ .+..++++
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~----------~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 73 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARP----------VNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLI 73 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHH----------hCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999998877766555432 123678887622110 0000 00 12334455
Q ss_pred HhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHH
Q 005288 148 SDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208 (704)
Q Consensus 148 ~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~ 208 (704)
...|++...... . .|++. +.+.++|++.++|.|++|+|...-.+.+
T Consensus 74 ~~~~~~~~~~~~--~-----~G~~~--------~~I~~~a~~~~~DLiV~g~~~~~~~~~~ 119 (142)
T PRK10116 74 QDADYPIEKTFI--A-----YGELS--------EHILEVCRKHHFDLVICGNHNHSFFSRA 119 (142)
T ss_pred HhcCCCeEEEEE--e-----cCCHH--------HHHHHHHHHhCCCEEEEcCCcchHHHHH
Confidence 566766432221 1 12222 2456789999999999999987655443
No 117
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.99 E-value=20 Score=36.91 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=74.9
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHH--HHHHHHHHHhcCCeEEEEEc
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE--ANIVSHRVSDMGIRCEIVRC 159 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~E--ae~V~kl~~~LGIp~~Iv~~ 159 (704)
..+|||=.--++||+-.+.-+.+. | .+++..+-|..+.|.+.-+ .+.++++|+++||++.--+.
T Consensus 3 ~~kiLlH~CCAPcs~y~le~l~~~---~-----------~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~iegdY 68 (204)
T COG1636 3 RPKLLLHSCCAPCSGYVLEKLRDS---G-----------IKITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINFIEGDY 68 (204)
T ss_pred CCeeEEEeecCCCcHHHHHHHHhc---C-----------cceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCCeeeecCc
Confidence 367999999999999887776543 2 2677888898888765433 34577899999999876654
Q ss_pred c----ccC------CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeec
Q 005288 160 D----WLD------GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197 (704)
Q Consensus 160 ~----~~~------~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~Lat 197 (704)
+ |.. ..+..|.-+..|=.+|.+.-.+.|.++|++++-+
T Consensus 69 ~~~~~w~~~vKg~E~EpE~G~RC~~Cfd~Rle~tA~~A~e~G~d~ftt 116 (204)
T COG1636 69 EDLEKWFERVKGMEDEPEGGKRCTMCFDMRLEKTAKKAKELGFDVFTT 116 (204)
T ss_pred ccHHHHHHHhhcchhCCCCCchhHhHHHHHHHHHHHHHHHcCCchhhh
Confidence 2 211 1234456788888999999999999999987643
No 118
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=78.11 E-value=32 Score=37.17 Aligned_cols=107 Identities=19% Similarity=0.229 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHHHH---c----CCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCC
Q 005288 61 TDMTKYREAFSRRMAM---A----GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133 (704)
Q Consensus 61 ~~~~~~~e~f~~~i~~---~----~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR 133 (704)
...+.+.+.|.....+ . .-...+||++-|| +-+-+|..||.+|.... ++.++.+|.=||-
T Consensus 62 ~~~~~l~~~f~~~a~~f~m~~~~~~~~~~~ri~i~VS--K~~HCL~DLL~r~~~g~---------L~~eI~~VIsNH~-- 128 (287)
T COG0788 62 LDREALRAAFAPLAEEFGMDWRLHDAAQRKRIAILVS--KEDHCLGDLLYRWRIGE---------LPAEIVAVISNHD-- 128 (287)
T ss_pred ccHHHHHHHHHHHHHhhCceeEEeccccCceEEEEEe--chHHHHHHHHHHHhcCC---------cCCceEEEEcCCH--
Confidence 5678888887663332 1 1244578999998 67889999998885432 4457888887883
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccc
Q 005288 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200 (704)
Q Consensus 134 ~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHh 200 (704)
..+.+++.+|||++.+..+-. ...|..+| +.++.++.|++.|++|-.
T Consensus 129 --------dl~~~v~~~~IPfhhip~~~~------~k~e~E~~------~~~ll~~~~~DlvVLARY 175 (287)
T COG0788 129 --------DLRPLVERFDIPFHHIPVTKE------NKAEAEAR------LLELLEEYGADLVVLARY 175 (287)
T ss_pred --------HHHHHHHHcCCCeeeccCCCC------cchHHHHH------HHHHHHHhCCCEEeehhh
Confidence 256777889999998865421 12344443 346677888999999854
No 119
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=74.53 E-value=37 Score=36.82 Aligned_cols=117 Identities=11% Similarity=0.119 Sum_probs=70.6
Q ss_pred ccCCHHHHHHHHHHHHHHcC-------CCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCC
Q 005288 59 YLTDMTKYREAFSRRMAMAG-------LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG 131 (704)
Q Consensus 59 ~~~~~~~~~e~f~~~i~~~~-------l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHG 131 (704)
...+.+++++.|.+.-.+.+ -....||+|-+||+. +.|-.++..+.. | .++.++.+|.-||.
T Consensus 63 ~~~~~~~l~~~l~~l~~~l~l~~~i~~~~~~~kiavl~Sg~g--~nl~al~~~~~~-~--------~l~~~i~~visn~~ 131 (289)
T PRK13010 63 EAASVDTFRQEFQPVAEKFDMQWAIHPDGQRPKVVIMVSKFD--HCLNDLLYRWRM-G--------ELDMDIVGIISNHP 131 (289)
T ss_pred CCCCHHHHHHHHHHHHHHhCCeEEEecCCCCeEEEEEEeCCC--ccHHHHHHHHHC-C--------CCCcEEEEEEECCh
Confidence 44668888888876544422 134568999999983 344445544432 2 23457888887874
Q ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHH
Q 005288 132 LREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208 (704)
Q Consensus 132 LR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~ 208 (704)
+ +.++|+++|||+++++... ......+ ..+.++.++++.|.++++--.-=.-+.+
T Consensus 132 -------~---~~~~A~~~gIp~~~~~~~~----~~~~~~~--------~~~~~~l~~~~~Dlivlagym~il~~~~ 186 (289)
T PRK13010 132 -------D---LQPLAVQHDIPFHHLPVTP----DTKAQQE--------AQILDLIETSGAELVVLARYMQVLSDDL 186 (289)
T ss_pred -------h---HHHHHHHcCCCEEEeCCCc----ccccchH--------HHHHHHHHHhCCCEEEEehhhhhCCHHH
Confidence 1 3578899999998875321 0111111 1355667788899999885443333333
No 120
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=73.31 E-value=46 Score=35.97 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=66.2
Q ss_pred cCCHHHHHHHHHH-HHHHcC-------CCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCC
Q 005288 60 LTDMTKYREAFSR-RMAMAG-------LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG 131 (704)
Q Consensus 60 ~~~~~~~~e~f~~-~i~~~~-------l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHG 131 (704)
..+.+++++.|.+ .-.+.+ .....||+|-+||+- +.|-.++..+. .| .++.++.+|.-||.
T Consensus 54 ~~~~~~l~~~l~~~~~~~~~l~i~l~~~~~~~ki~vl~Sg~g--~nl~~l~~~~~-~g--------~l~~~i~~visn~~ 122 (280)
T TIGR00655 54 RLEESSLLAAFKSALAEKFEMTWELILADKLKRVAILVSKED--HCLGDLLWRWY-SG--------ELDAEIALVISNHE 122 (280)
T ss_pred CCCHHHHHHHHHHHHHHHhCCEEEEecCCCCcEEEEEEcCCC--hhHHHHHHHHH-cC--------CCCcEEEEEEEcCh
Confidence 4678888888777 333321 234578999999993 34445555443 22 13447888888873
Q ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeeccccc
Q 005288 132 LREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (704)
Q Consensus 132 LR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHha 201 (704)
+ +..+|+++|||+++.+... .+.++ --..+.++.++.+.|.++++--.
T Consensus 123 -------~---~~~~A~~~gIp~~~~~~~~-------~~~~~-----~e~~~~~~l~~~~~Dlivlagym 170 (280)
T TIGR00655 123 -------D---LRSLVERFGIPFHYIPATK-------DNRVE-----HEKRQLELLKQYQVDLVVLAKYM 170 (280)
T ss_pred -------h---HHHHHHHhCCCEEEcCCCC-------cchhh-----hHHHHHHHHHHhCCCEEEEeCch
Confidence 1 2336889999998764210 11111 11235566778889999988443
No 121
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=73.15 E-value=54 Score=35.48 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=70.0
Q ss_pred ccCCHHHHHHHHHHHHHHcC-------CCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCC
Q 005288 59 YLTDMTKYREAFSRRMAMAG-------LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG 131 (704)
Q Consensus 59 ~~~~~~~~~e~f~~~i~~~~-------l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHG 131 (704)
...+.+.+++.|.+.-.+.+ ..+..||++.+||+ .+.|-.|+..+. .+ .++.++.+|.-||.
T Consensus 59 ~~~~~~~L~~~L~~l~~~l~l~i~i~~~~~~~ri~vl~Sg~--g~nl~al~~~~~-~~--------~~~~~i~~visn~~ 127 (286)
T PRK13011 59 EGLDEDALRAGFAPIAARFGMQWELHDPAARPKVLIMVSKF--DHCLNDLLYRWR-IG--------ELPMDIVGVVSNHP 127 (286)
T ss_pred CCCCHHHHHHHHHHHHHHhCcEEEEeecccCceEEEEEcCC--cccHHHHHHHHH-cC--------CCCcEEEEEEECCc
Confidence 45668888888877554422 23457899999997 334444554432 22 13457888888873
Q ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHH
Q 005288 132 LREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208 (704)
Q Consensus 132 LR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~ 208 (704)
.+..+|+++|||+++.+.. + .+.++ --..+.++.++.+.|.++++.-.-=.-+.+
T Consensus 128 ----------~~~~lA~~~gIp~~~~~~~-----~--~~~~~-----~~~~~~~~l~~~~~Dlivlagy~~il~~~~ 182 (286)
T PRK13011 128 ----------DLEPLAAWHGIPFHHFPIT-----P--DTKPQ-----QEAQVLDVVEESGAELVVLARYMQVLSPEL 182 (286)
T ss_pred ----------cHHHHHHHhCCCEEEeCCC-----c--Cchhh-----hHHHHHHHHHHhCcCEEEEeChhhhCCHHH
Confidence 1455689999999876431 1 11111 011255666788899999885443333333
No 122
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=72.63 E-value=44 Score=36.13 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=67.2
Q ss_pred ccCCHHHHHHHHHHHHHHcC-------CCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCC
Q 005288 59 YLTDMTKYREAFSRRMAMAG-------LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG 131 (704)
Q Consensus 59 ~~~~~~~~~e~f~~~i~~~~-------l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHG 131 (704)
.+.+.+++.+.+.+.-.+.+ ..+..||+|.+||+ .+.|-.|+..+.. + .++.++.+|.-|+.
T Consensus 59 ~~~~~~~L~~~L~~l~~~l~l~i~l~~~~~~~ri~vl~Sg~--gsnl~al~~~~~~-~--------~~~~~i~~visn~~ 127 (286)
T PRK06027 59 LIFNLETLRADFAALAEEFEMDWRLLDSAERKRVVILVSKE--DHCLGDLLWRWRS-G--------ELPVEIAAVISNHD 127 (286)
T ss_pred CCCCHHHHHHHHHHHHHHhCCEEEEcccccCcEEEEEEcCC--CCCHHHHHHHHHc-C--------CCCcEEEEEEEcCh
Confidence 45568888888876554432 24567899999999 4445555544422 2 23457878777763
Q ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccc
Q 005288 132 LREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200 (704)
Q Consensus 132 LR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHh 200 (704)
.+..+|+++|||+++++... . .....+ ..+.++.++.+.|.++++--
T Consensus 128 ----------~~~~lA~~~gIp~~~~~~~~-~---~~~~~~--------~~~~~~l~~~~~Dlivlagy 174 (286)
T PRK06027 128 ----------DLRSLVERFGIPFHHVPVTK-E---TKAEAE--------ARLLELIDEYQPDLVVLARY 174 (286)
T ss_pred ----------hHHHHHHHhCCCEEEeccCc-c---ccchhH--------HHHHHHHHHhCCCEEEEecc
Confidence 24556899999998875321 0 001111 12556667888999988743
No 123
>PRK15005 universal stress protein F; Provisional
Probab=69.88 E-value=27 Score=32.22 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=17.3
Q ss_pred HHHHHHHHcCCCEeecccccc
Q 005288 182 LFQKVCIQHQIGVLLIAHHAD 202 (704)
Q Consensus 182 ~L~~~A~e~G~~~LatGHhaD 202 (704)
.+.+.+++.++|.|++|+|..
T Consensus 98 ~I~~~a~~~~~DLIV~Gs~~~ 118 (144)
T PRK15005 98 RILELAKKIPADMIIIASHRP 118 (144)
T ss_pred HHHHHHHHcCCCEEEEeCCCC
Confidence 456678999999999998854
No 124
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=69.35 E-value=51 Score=28.92 Aligned_cols=94 Identities=11% Similarity=0.065 Sum_probs=55.1
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHH-------HHHHHH---------H
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE-------ANIVSH---------R 146 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~E-------ae~V~k---------l 146 (704)
++|+|+++|+.+|-.++..+..+... .+.+++++||-.-........ ...... .
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~----------~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKR----------SGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEE 72 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHH----------HTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHh----------hCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHH
Confidence 68999999999999988776665443 124789999876543111000 000000 1
Q ss_pred HHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeeccccc
Q 005288 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (704)
Q Consensus 147 ~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHha 201 (704)
+...+.......... ++.. +.+.+++++.+++.|++|++.
T Consensus 73 ~~~~~~~~~~~~~~~-------~~~~--------~~i~~~~~~~~~dliv~G~~~ 112 (140)
T PF00582_consen 73 AEAEGGIVIEVVIES-------GDVA--------DAIIEFAEEHNADLIVMGSRG 112 (140)
T ss_dssp HHHHTTSEEEEEEEE-------SSHH--------HHHHHHHHHTTCSEEEEESSS
T ss_pred HhhhccceeEEEEEe-------eccc--------hhhhhccccccceeEEEeccC
Confidence 112233333332221 2221 246678899999999999988
No 125
>PRK11175 universal stress protein UspE; Provisional
Probab=63.35 E-value=60 Score=34.14 Aligned_cols=99 Identities=8% Similarity=0.048 Sum_probs=54.9
Q ss_pred CCCCEEEEEEcCChhH-------HHHHHHHHhhhhCCCCCCCCCCCC-CCcEEEEEEeCCCC--------CC-cHH----
Q 005288 80 KPHHRIALGVSGGPDS-------MALCVLTAGWKTGGFNQNGEAGEF-IDGLLAITVDHGLR--------EE-SKE---- 138 (704)
Q Consensus 80 ~~~~kVlVAVSGGvDS-------maLL~LL~~~~~~g~~~~~~~~gi-~~~L~AVhVDHGLR--------~e-S~~---- 138 (704)
.+.++|++|+-|+.++ ..++.....+.+. . +.+++.+||-.... .. ..+
T Consensus 150 ~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~----------~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~ 219 (305)
T PRK11175 150 PEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQ----------LNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDA 219 (305)
T ss_pred CCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhh----------CcCCceEEEEEecCcchhccccccccchhhHHHH
Confidence 3457899999987653 3333333333221 1 23688888743211 00 000
Q ss_pred ----HHHHHHHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccch
Q 005288 139 ----EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (704)
Q Consensus 139 ----Eae~V~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDD 203 (704)
-.+.++++++.+|++.....+ ..|++. +.+.+.+++.++|.|++|+|..-
T Consensus 220 ~~~~~~~~l~~~~~~~~~~~~~~~v-------~~G~~~--------~~I~~~a~~~~~DLIVmG~~~~~ 273 (305)
T PRK11175 220 IRGQHLLAMKALRQKFGIDEEQTHV-------EEGLPE--------EVIPDLAEHLDAELVILGTVGRT 273 (305)
T ss_pred HHHHHHHHHHHHHHHhCCChhheee-------ccCCHH--------HHHHHHHHHhCCCEEEECCCccC
Confidence 112355666777876432211 123333 24667899999999999998654
No 126
>PRK15456 universal stress protein UspG; Provisional
Probab=60.99 E-value=1.1e+02 Score=28.40 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=17.5
Q ss_pred HHHHHHHcCCCEeecccccch
Q 005288 183 FQKVCIQHQIGVLLIAHHADD 203 (704)
Q Consensus 183 L~~~A~e~G~~~LatGHhaDD 203 (704)
+.++++++++|.|++|+|..-
T Consensus 97 I~~~a~~~~~DLIVmG~~g~~ 117 (142)
T PRK15456 97 VNELAEELGADVVVIGSRNPS 117 (142)
T ss_pred HHHHHhhcCCCEEEEcCCCCC
Confidence 556789999999999999743
No 127
>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=60.01 E-value=1.2e+02 Score=32.26 Aligned_cols=108 Identities=18% Similarity=0.225 Sum_probs=62.1
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCC-C-cHHHH----------HHHHHHHHhcC
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-E-SKEEA----------NIVSHRVSDMG 151 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~-e-S~~Ea----------e~V~kl~~~LG 151 (704)
||+--+|||+||.-.+.-+ .+.| .+++|+- .+++ + +.+|. ..+.-+++-++
T Consensus 2 rvvaLiSGGKDScynmm~c---v~~g-----------HeiVaLa---nl~p~~d~~delDSyMyQtVGh~~i~lyaecm~ 64 (277)
T KOG2316|consen 2 RVVALISGGKDSCYNMMCC---VRLG-----------HEIVALA---NLHPKEDESDELDSYMYQTVGHDVIDLYAECMG 64 (277)
T ss_pred cEEEEEeCChHHHHHHHHH---HHcC-----------Ceeeeee---cccCCcccchhHHHHHHHhhhHHHHHHHHHHhc
Confidence 5788899999997654433 2333 2455532 2332 2 12222 12333678899
Q ss_pred CeEEEEEccccCC------CCCCC-ChHHHHHHHHHHHHHHHHHHc-CCCEeecccccchhHHHHHHHHh
Q 005288 152 IRCEIVRCDWLDG------RPKQG-HLQEAARDMRYRLFQKVCIQH-QIGVLLIAHHADDQAELFILRLS 213 (704)
Q Consensus 152 Ip~~Iv~~~~~~~------~~~~g-niEe~AR~~RY~~L~~~A~e~-G~~~LatGHhaDDqaET~LmrL~ 213 (704)
+|++...+.-... ....+ ..|+ -|+++..+-+++ ..+.+..|-.+.|---+-.-+++
T Consensus 65 lPlyrr~i~g~s~nq~l~Y~~t~~DEvED-----Ly~ll~~VK~~~p~~eaVS~GAIlS~YQr~RVEnVC 129 (277)
T KOG2316|consen 65 LPLYRRRIRGRSINQKLQYTKTEGDEVED-----LYELLKTVKEKIPDVEAVSVGAILSDYQRTRVENVC 129 (277)
T ss_pred CceeeeeccCcccccccccccCCCchHHH-----HHHHHHHHHhhCCCceeeehhhhHhHHHHHHHHHHH
Confidence 9998876542110 01111 2232 477888888888 78899999998885444333333
No 128
>PRK11175 universal stress protein UspE; Provisional
Probab=59.52 E-value=85 Score=32.99 Aligned_cols=101 Identities=14% Similarity=0.163 Sum_probs=56.0
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEE--eCCCC-----CCcH---------HH-HHHHHH
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV--DHGLR-----EESK---------EE-ANIVSH 145 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhV--DHGLR-----~eS~---------~E-ae~V~k 145 (704)
++|+|++.|..+|-.++.....+.+.. +.+++.+|+ +.... .... ++ .+.+++
T Consensus 4 ~~ILv~~D~s~~~~~al~~a~~lA~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 73 (305)
T PRK11175 4 QNILVVIDPNQDDQPALRRAVYLAQRN----------GGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIRE 73 (305)
T ss_pred ceEEEEcCCCccccHHHHHHHHHHHhc----------CCCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 579999999999888776655543321 125777765 22110 0000 00 011222
Q ss_pred HH---HhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHH
Q 005288 146 RV---SDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208 (704)
Q Consensus 146 l~---~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~ 208 (704)
.+ +..|++....-. |. +.+ .+.+.+.|++.++|.|++|+|.....+..
T Consensus 74 ~~~~~~~~~~~~~~~v~-~~------g~~--------~~~i~~~a~~~~~DLiV~G~~~~~~~~~~ 124 (305)
T PRK11175 74 QAKPYLDAGIPIEIKVV-WH------NRP--------FEAIIQEVIAGGHDLVVKMTHQHDKLESV 124 (305)
T ss_pred HHHHHhhcCCceEEEEe-cC------CCc--------HHHHHHHHHhcCCCEEEEeCCCCcHHHhh
Confidence 22 334665544221 11 111 23567788999999999999976644433
No 129
>PLN02828 formyltetrahydrofolate deformylase
Probab=59.00 E-value=59 Score=35.05 Aligned_cols=83 Identities=18% Similarity=0.206 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHHHcC----------CCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeC
Q 005288 61 TDMTKYREAFSRRMAMAG----------LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH 130 (704)
Q Consensus 61 ~~~~~~~e~f~~~i~~~~----------l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDH 130 (704)
...+++++.|...-.... ..+..||+|.+||+.- .|-.|+..+... .++.++.+|.-||
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riavlvSg~g~--nl~~ll~~~~~g---------~l~~eI~~ViSn~ 107 (268)
T PLN02828 39 WPRAQMDEDFQEISKHFKALKSVVRVPGLDPKYKIAVLASKQDH--CLIDLLHRWQDG---------RLPVDITCVISNH 107 (268)
T ss_pred CCHHHHHHHHHHHHHhcCCcceEEEEccCCCCcEEEEEEcCCCh--hHHHHHHhhhcC---------CCCceEEEEEeCC
Confidence 446677766655322211 1355789999999853 455566555332 1345788888887
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCeEEEEEc
Q 005288 131 GLREESKEEANIVSHRVSDMGIRCEIVRC 159 (704)
Q Consensus 131 GLR~eS~~Eae~V~kl~~~LGIp~~Iv~~ 159 (704)
--.+. ..+.++++++|||++++..
T Consensus 108 ~~~~~-----a~~~~~A~~~gIP~~~~~~ 131 (268)
T PLN02828 108 ERGPN-----THVMRFLERHGIPYHYLPT 131 (268)
T ss_pred CCCCC-----chHHHHHHHcCCCEEEeCC
Confidence 42111 2467788999999987653
No 130
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=57.51 E-value=1.1e+02 Score=32.09 Aligned_cols=103 Identities=15% Similarity=0.193 Sum_probs=54.2
Q ss_pred CCCCCEEEEEEcCChhHHHHHHHHHhhh-hCCCCCCCCCCCCCCcEEEEEEeCCC--CCCc-HHHHHHHHH-HHHhcCCe
Q 005288 79 LKPHHRIALGVSGGPDSMALCVLTAGWK-TGGFNQNGEAGEFIDGLLAITVDHGL--REES-KEEANIVSH-RVSDMGIR 153 (704)
Q Consensus 79 l~~~~kVlVAVSGGvDSmaLL~LL~~~~-~~g~~~~~~~~gi~~~L~AVhVDHGL--R~eS-~~Eae~V~k-l~~~LGIp 153 (704)
+..++.+.+|+|||..=.-+...|.+.. +... +| .+++.+.+|-.+ -.++ ..-..++++ +...++||
T Consensus 29 ~~~~~~~~i~lsgG~tP~~~y~~L~~~~~~~~i-------~w-~~v~if~~DEr~~Vp~~~~~Sn~~~~~~~l~~~~~ip 100 (253)
T PTZ00285 29 PTSDRPFVLGLPTGSTPLPTYQELIRAYREGRV-------SF-SNVVTFNMDEYVGLPRDHPQSYHYFMKENFFDHVDIK 100 (253)
T ss_pred hhcCCCeEEEEcCCCCHHHHHHHHHHHHhhcCC-------ch-hHeEEECCcEEecCCCCchHHHHHHHHHHHhccCCCC
Confidence 4456789999999988777666655432 2222 12 367888888754 2222 122233444 44556665
Q ss_pred EEEE-EccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecc
Q 005288 154 CEIV-RCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198 (704)
Q Consensus 154 ~~Iv-~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatG 198 (704)
-.-+ .++ ....++++.|+ +|+.. +.+..++|.+++|
T Consensus 101 ~~~~~~~~-----~~~~~~~~~~~--~y~~~--i~~~~~~Dl~lLG 137 (253)
T PTZ00285 101 EENRHILN-----GTAPDLEEECR--RYEEK--IRAVGGIDLFLAG 137 (253)
T ss_pred HhhEEcCC-----CCCcCHHHHHH--HHHHH--HHHhCCCcEEEeC
Confidence 3211 111 11124666664 45532 2222367888877
No 131
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=53.93 E-value=99 Score=32.49 Aligned_cols=146 Identities=14% Similarity=0.159 Sum_probs=87.6
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEcccc
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMG-IRCEIVRCDWL 162 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LG-Ip~~Iv~~~~~ 162 (704)
-+..|+||--| +|+..+++.. +. ..-++++|.|-- -++-.....+.-+++| |++++...+..
T Consensus 48 ~~q~a~~G~~~-lvlid~~~~~---~~-----------~~~l~~idT~~~--~PeT~~l~d~VekkY~~i~I~~~~pd~~ 110 (261)
T KOG0189|consen 48 LFQTAASGLEG-LVLIDMLSKT---GR-----------PFRLFFIDTLHH--FPETLRLFDAVEKKYGNIRIHVYFPDAV 110 (261)
T ss_pred HHHHHhccccc-hHHHHHHHHc---CC-----------CceeEEeecccc--ChHHHHHHHHHHHhcCceEEEEEcchhH
Confidence 35667777665 5666776653 21 245678998732 2334444455556787 88887754421
Q ss_pred CCC----CCC------CChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCcccccccccccc
Q 005288 163 DGR----PKQ------GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS 232 (704)
Q Consensus 163 ~~~----~~~------gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~ 232 (704)
... .+. .+-++.+|..+-+-+.++-+.+++.+++||...|. | |..+ .+|-+ ++.
T Consensus 111 e~ea~~~~K~~~~~~E~~~q~~~~l~KV~P~~RA~k~L~v~A~~TGrRksQ-----------~-gtRs--elpiV-qvD- 174 (261)
T KOG0189|consen 111 EVEALFASKGGFSLWEDDHQEYDRLRKVEPARRAYKGLNVKAVFTGRRKSQ-----------G-GTRS--ELPIV-QVD- 174 (261)
T ss_pred HHHHHHHhccchhheecCchhhhhhhhccHHHHHhhccceeeEEecccccC-----------C-Cccc--ccceE-Eec-
Confidence 110 011 12244555555556777788888999999976654 1 2221 12221 111
Q ss_pred cccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005288 233 SYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (704)
Q Consensus 233 ~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (704)
.--++.-+-||.++.-.++..|.+.+++||
T Consensus 175 ----------~~fellK~NPlaN~~~~dV~nyi~t~nVP~ 204 (261)
T KOG0189|consen 175 ----------PVFELLKINPLANWEFNDVWNYIRTNNVPY 204 (261)
T ss_pred ----------CccceeeecccccccHHHHHHHHHhcCCcH
Confidence 011255678999999999999999999987
No 132
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=50.17 E-value=2.4e+02 Score=31.68 Aligned_cols=105 Identities=10% Similarity=0.038 Sum_probs=58.9
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCC--CCc---HHH----HHHHHHHHHh---
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR--EES---KEE----ANIVSHRVSD--- 149 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR--~eS---~~E----ae~V~kl~~~--- 149 (704)
-+||+||+-|..-|.-++.-+.++.+.. +.+.+++++||-.... ... ..+ .+.+++.+++
T Consensus 5 ykkILVavDGSe~S~~Al~~AielA~~~--------g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~ 76 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVESAEEA--------AETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLG 76 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHHHHHhc--------CCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhh
Confidence 3789999999999998877666654321 0123788888643211 000 011 2334444443
Q ss_pred ---cCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccc
Q 005288 150 ---MGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (704)
Q Consensus 150 ---LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaD 202 (704)
-|++++..-..-..+.-..|++.+ .+.++|+++++|.|++|--++
T Consensus 77 ~~~~gV~ve~~vv~~~~~~~~~G~pae--------~Iv~~Aee~~aDLIVm~~~~~ 124 (357)
T PRK12652 77 DDASSVTIETALLGTDEYLFGPGDYAE--------VLIAYAEEHGIDRVVLDPEYN 124 (357)
T ss_pred cccCCCceEEEEEeccccccCCCCHHH--------HHHHHHHHcCCCEEEECCCCC
Confidence 377765443211000001233222 356789999999999997664
No 133
>PF11734 TilS_C: TilS substrate C-terminal domain; InterPro: IPR012796 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of lysidine-tRNA(Ile) synthetase, which ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a PP-loop motif involved in ATP binding. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) versus AUG (Met) and UGA (stop) versus UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, E. coli NtrL, and B. subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain. The HUP domain class (after HIGH-signature proteins, UspA, and PP-ATPase) groups together PP-loop ATPases, the nucleotide-binding domains of class I aminoacyl-tRNA synthetases, UspA protein (USPA domains), photolyases, and electron transport flavoproteins (ETFP). The HUP domain is a distinct class of alpha/beta domain[]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3A2K_A 3HJ7_A 1NI5_A.
Probab=48.04 E-value=12 Score=32.20 Aligned_cols=34 Identities=26% Similarity=0.521 Sum_probs=24.3
Q ss_pred cHHHHHHHhccchhhhhhcCceEEccCcceeeeecc
Q 005288 641 SAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIPSI 676 (704)
Q Consensus 641 ~~~~~~~~l~~~p~~~r~~lpvl~~~~~~~~~~p~~ 676 (704)
+.++-+.- .-||..-|..+|||.. +|++++||-+
T Consensus 22 ~lKk~~~e-~kIP~~~R~~~Pll~~-~~~iv~v~g~ 55 (74)
T PF11734_consen 22 KLKKLFQE-AKIPPWQRDRLPLLCD-GGEIVWVPGL 55 (74)
T ss_dssp EHHHHHHH-CT--HHHCCCSEEEEE-TTEEEEETTT
T ss_pred hHHHHHHH-cCCCHHHHCcEEEEEE-CCEEEEEeCe
Confidence 34444443 4699999999999999 7799999853
No 134
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=45.29 E-value=47 Score=30.50 Aligned_cols=68 Identities=10% Similarity=-0.026 Sum_probs=41.4
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeC---CC--------CCCcHHHHHHHHHHHHhcCC
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH---GL--------REESKEEANIVSHRVSDMGI 152 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDH---GL--------R~eS~~Eae~V~kl~~~LGI 152 (704)
+|+++++||.-|+.++.-++++.+. .|+..++.+..+.- -. -+.-.--...+++.+...|+
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~--------~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~i 73 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKE--------RGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGI 73 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--------CCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCC
Confidence 5899999999999999888776543 23433444433210 00 01112234557777777888
Q ss_pred eEEEEEc
Q 005288 153 RCEIVRC 159 (704)
Q Consensus 153 p~~Iv~~ 159 (704)
|+.+++.
T Consensus 74 pv~~I~~ 80 (99)
T cd05565 74 KLVTTTG 80 (99)
T ss_pred CEEEeCH
Confidence 8877653
No 135
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=43.97 E-value=11 Score=38.74 Aligned_cols=35 Identities=11% Similarity=0.193 Sum_probs=25.9
Q ss_pred hhhccCcCCC--------cceeeecc--------------chhhhhhhccccCCcCCc
Q 005288 24 RLSLSSVKCR--------IPFTRSQY--------------LPSIRLFCKCSHAHAVEY 59 (704)
Q Consensus 24 ~~~~~~~~~~--------~~~~~~q~--------------~~f~~~~c~~~~~w~~~~ 59 (704)
.+++++..|+ +++||+|| +||+ .+|++.++|++..
T Consensus 146 ~vla~s~~~~vqa~~~~~~~i~gvQfHPE~~~t~~g~~~l~~f~-~~~~~~~~~~~~~ 202 (214)
T PRK07765 146 EVTARTDSGVIMAVRHRELPIHGVQFHPESVLTEGGHRMLANWL-TVCGWAPDEALVR 202 (214)
T ss_pred EEEEEcCCCcEEEEEeCCCCEEEEeeCCCcccCcchHHHHHHHH-HHhccccchhhcc
Confidence 4556666664 25899999 6786 6899999999444
No 136
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=41.89 E-value=51 Score=29.80 Aligned_cols=69 Identities=13% Similarity=-0.013 Sum_probs=42.5
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeC----C-------CCCCcHHHHHHHHHHHHhcC
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH----G-------LREESKEEANIVSHRVSDMG 151 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDH----G-------LR~eS~~Eae~V~kl~~~LG 151 (704)
.+|++++.+|.-|+.++.-+.++.++ .|+..++.+..+.- . +-+.-....+.+++.+...|
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~--------~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ 75 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEE--------YGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKG 75 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHH--------CCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcC
Confidence 68999999999999877666665443 23433343333210 0 01122345566778888888
Q ss_pred CeEEEEEc
Q 005288 152 IRCEIVRC 159 (704)
Q Consensus 152 Ip~~Iv~~ 159 (704)
+|+.+++.
T Consensus 76 ipv~~I~~ 83 (95)
T TIGR00853 76 IPVEVING 83 (95)
T ss_pred CCEEEeCh
Confidence 88887754
No 137
>PRK00955 hypothetical protein; Provisional
Probab=41.33 E-value=1.8e+02 Score=35.02 Aligned_cols=22 Identities=32% Similarity=0.262 Sum_probs=17.7
Q ss_pred CEEEEEEcCC-hhHHHHHHHHHh
Q 005288 83 HRIALGVSGG-PDSMALCVLTAG 104 (704)
Q Consensus 83 ~kVlVAVSGG-vDSmaLL~LL~~ 104 (704)
.++..+||+| .|||+.-+-..+
T Consensus 66 P~l~~~vs~g~~dsmv~~yt~~~ 88 (620)
T PRK00955 66 PRLFFLVSAGNMDSMVNHYTASK 88 (620)
T ss_pred CcEEEEeccccHHHHHhhcchhh
Confidence 5789999999 899998776543
No 138
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=40.80 E-value=1.1e+02 Score=31.74 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccCCCCCCCChH
Q 005288 93 PDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQ 172 (704)
Q Consensus 93 vDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~~~~~gniE 172 (704)
.|..++-.++..++++| ..+||..-.+.| .+.+.|+++|+|....++- ... ..+.+
T Consensus 103 ~~~~~m~~vl~~l~~~g---------------l~FvDS~T~~~s-----~a~~~A~~~gvp~~~rdvf---LD~-~~~~~ 158 (213)
T PF04748_consen 103 SDREAMRWVLEVLKERG---------------LFFVDSRTTPRS-----VAPQVAKELGVPAARRDVF---LDN-DQDEA 158 (213)
T ss_dssp C-HHHHHHHHHHHHHTT----------------EEEE-S--TT------SHHHHHHHCT--EEE-SEE---TTS-T-SHH
T ss_pred CCHHHHHHHHHHHHHcC---------------CEEEeCCCCccc-----HHHHHHHHcCCCEEeecee---cCC-CCCHH
Confidence 47777778888776665 368998876554 3567788999999876542 211 12344
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEeecccccchhHH
Q 005288 173 EAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206 (704)
Q Consensus 173 e~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaE 206 (704)
...+.+ +.+.+.|++.| ..|++||-...-++
T Consensus 159 ~I~~ql--~~~~~~A~~~G-~aI~Igh~~p~Tl~ 189 (213)
T PF04748_consen 159 AIRRQL--DQAARIARKQG-SAIAIGHPRPETLE 189 (213)
T ss_dssp HHHHHH--HHHHHHHHCCS-EEEEEEE-SCCHHH
T ss_pred HHHHHH--HHHHHhhhhcC-cEEEEEcCCHHHHH
Confidence 444433 34678888877 47899999988665
No 139
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=40.11 E-value=3.1e+02 Score=31.89 Aligned_cols=99 Identities=12% Similarity=0.136 Sum_probs=64.7
Q ss_pred EEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccCC
Q 005288 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG 164 (704)
Q Consensus 85 VlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~ 164 (704)
.+|++=|.-=++.++.|+..+++.+. ++..|-.|.- | +.-.++++.++++.|+|++-..
T Consensus 104 mmvGLQGsGKTTt~~KLA~~lkk~~~-----------kvllVaaD~~-R---pAA~eQL~~La~q~~v~~f~~~------ 162 (451)
T COG0541 104 LMVGLQGSGKTTTAGKLAKYLKKKGK-----------KVLLVAADTY-R---PAAIEQLKQLAEQVGVPFFGSG------ 162 (451)
T ss_pred EEEeccCCChHhHHHHHHHHHHHcCC-----------ceEEEecccC-C---hHHHHHHHHHHHHcCCceecCC------
Confidence 45889998889988888877665443 5667778873 4 4556778999999999986431
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHH
Q 005288 165 RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILR 211 (704)
Q Consensus 165 ~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~Lmr 211 (704)
...++-+.|+.. -+.|++.++|+|++=+--..++|.-||.
T Consensus 163 --~~~~Pv~Iak~a-----l~~ak~~~~DvvIvDTAGRl~ide~Lm~ 202 (451)
T COG0541 163 --TEKDPVEIAKAA-----LEKAKEEGYDVVIVDTAGRLHIDEELMD 202 (451)
T ss_pred --CCCCHHHHHHHH-----HHHHHHcCCCEEEEeCCCcccccHHHHH
Confidence 112455555542 2456677788877755444444444443
No 140
>PRK01254 hypothetical protein; Provisional
Probab=37.03 E-value=1.7e+02 Score=35.67 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=59.4
Q ss_pred CEEEEEEcCC-hhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHh--cCCeEEEEEc
Q 005288 83 HRIALGVSGG-PDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSD--MGIRCEIVRC 159 (704)
Q Consensus 83 ~kVlVAVSGG-vDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~--LGIp~~Iv~~ 159 (704)
-++..+||+| .||||.=+-..+-.+. .+++..+. .+|.|++.+ -..++ +.+++ -++|+.+
T Consensus 92 PrLffgVsaGn~DSMvn~YTa~kk~R~-----~DaYtPgg-------~~g~RPdrA-~ivy~-~~~r~~f~~~pvil--- 154 (707)
T PRK01254 92 PNLFFGVTAGNMDSMINRYTADRKLRH-----DDAYTPDN-------VAGKRPDRA-TLVYT-QRCKEAYKDVPVIL--- 154 (707)
T ss_pred CcEEEEeccccHHHHHHhccccccccc-----ccCcCCCC-------CCCCCCChh-HHHHH-HHHHHHCCCCCEEe---
Confidence 6799999999 9999986655432111 11222211 157887643 22222 23333 2565543
Q ss_pred cccCCCCCCCChHHHH-HHHHHHHH-----HHHHHHcCCCEeecccccchhHHHHHHHHhccCCCC
Q 005288 160 DWLDGRPKQGHLQEAA-RDMRYRLF-----QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVL 219 (704)
Q Consensus 160 ~~~~~~~~~gniEe~A-R~~RY~~L-----~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~ 219 (704)
|.+|..- |..-|++- ..+...-++|.|+.|---.-.. .+.-+|.+|..+.
T Consensus 155 ---------GGieaSlrR~aHYDyWsdkvr~sil~d~~aD~lvyGmgE~~i~-e~a~~l~~g~~~~ 210 (707)
T PRK01254 155 ---------GGIEASLRRIAHYDYWSDKVRRSVLVDAKADILMYGNAERPLV-EVAHRLAMGEPIS 210 (707)
T ss_pred ---------ccccHHhhhhhhcchhhcccchhhcccCCCCEEEECccHHHHH-HHHHHHHcCCChh
Confidence 3455544 34456552 3344556799999995333333 3455666665443
No 141
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=35.94 E-value=1.6e+02 Score=30.20 Aligned_cols=99 Identities=16% Similarity=0.211 Sum_probs=52.4
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCc--HHHHHHHHH-HHHhcCCeEE-EE
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES--KEEANIVSH-RVSDMGIRCE-IV 157 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS--~~Eae~V~k-l~~~LGIp~~-Iv 157 (704)
+.++.+|+|||.-=..+...+.+.. .. +| .+++.+.+|..+=+.. .--..++++ +....+++-. +.
T Consensus 22 ~~~~~l~lsGGstp~~~y~~L~~~~--~i-------~w-~~v~~f~~DEr~Vp~~~~~Sn~~~~~~~ll~~~~~~~~~v~ 91 (219)
T cd01400 22 RGRFSLALSGGSTPKPLYELLAAAP--AL-------DW-SKVHVFLGDERCVPPDDPDSNYRLAREALLSHVAIPAANIH 91 (219)
T ss_pred cCeEEEEECCCccHHHHHHHhcccc--CC-------CC-ceEEEEEeeccccCCCCcccHHHHHHHHhhccCCCCHhhEE
Confidence 4689999999998887766654321 11 12 3788889998653211 112234554 4455666521 22
Q ss_pred EccccCCCCCCCChHHHHHHHHHHH-HHHHHH-HcCCCEeecc
Q 005288 158 RCDWLDGRPKQGHLQEAARDMRYRL-FQKVCI-QHQIGVLLIA 198 (704)
Q Consensus 158 ~~~~~~~~~~~gniEe~AR~~RY~~-L~~~A~-e~G~~~LatG 198 (704)
..+ ....+++.|+. |+. +.+... .-++|.+++|
T Consensus 92 ~~~------~~~~~~~~a~~--y~~~i~~~~~~~~~~Dl~lLG 126 (219)
T cd01400 92 PIP------TELGPEDAAAA--YEKELRALFGGVPPFDLVLLG 126 (219)
T ss_pred eCC------CCCCHHHHHHH--HHHHHHHHhcCCCCCCEEEEC
Confidence 111 11235666654 543 222211 1357888777
No 142
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=33.91 E-value=1.3e+02 Score=35.44 Aligned_cols=19 Identities=11% Similarity=0.078 Sum_probs=15.0
Q ss_pred CCCHHHHHHHHHhCCCcee
Q 005288 255 DFSKDDMYKICQGGNRDWV 273 (704)
Q Consensus 255 ~lsK~EIr~y~~~~gLp~v 273 (704)
..+.+++.+..++.|+-|.
T Consensus 330 ~~~~~~~~~~l~~~g~~fl 348 (531)
T PRK09522 330 DMNADKSRQALDELGVCFL 348 (531)
T ss_pred CCCHHHHHHHHHHhCcEEE
Confidence 5677888888888888876
No 143
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=33.89 E-value=4.5e+02 Score=31.51 Aligned_cols=107 Identities=15% Similarity=0.055 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCC---CcHH
Q 005288 62 DMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE---ESKE 138 (704)
Q Consensus 62 ~~~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~---eS~~ 138 (704)
+|++..+.+.+.+.+ +++|+|-=---+|.++...++.+..+. ++..-+..+|-|.+.+ -+.
T Consensus 54 ~m~~a~~ri~~ai~~-----~e~I~I~gDyD~DGitstail~~~L~~----------~g~~~~~~~IP~R~~eGYGl~~- 117 (575)
T PRK11070 54 GIEKAVELLYNALRE-----GTRIIVVGDFDADGATSTALSVLALRS----------LGCSNVDYLVPNRFEDGYGLSP- 117 (575)
T ss_pred CHHHHHHHHHHHHHC-----CCEEEEEEecCccHHHHHHHHHHHHHH----------cCCCceEEEeCCCCcCCCCCCH-
Confidence 356666666555554 588988877788877776666554332 1111123455543321 122
Q ss_pred HHHHHHHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccch
Q 005288 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (704)
Q Consensus 139 Eae~V~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDD 203 (704)
..++++.+ .|..+.|. ++- ..++.++ .+.|++.|+++|+|-||..+
T Consensus 118 --~~i~~~~~-~~~~LiIt-vD~-----Gi~~~e~----------i~~a~~~gidvIVtDHH~~~ 163 (575)
T PRK11070 118 --EVVDQAHA-RGAQLIVT-VDN-----GISSHAG----------VAHAHALGIPVLVTDHHLPG 163 (575)
T ss_pred --HHHHHHHh-cCCCEEEE-EcC-----CcCCHHH----------HHHHHHCCCCEEEECCCCCC
Confidence 33444433 47665443 321 1234444 24578889999999999754
No 144
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=33.02 E-value=83 Score=29.11 Aligned_cols=84 Identities=13% Similarity=0.042 Sum_probs=47.5
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCC---C----------CCCcHHHHHHHHHHHHh
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG---L----------REESKEEANIVSHRVSD 149 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHG---L----------R~eS~~Eae~V~kl~~~ 149 (704)
++|++++.||.-|+.++.-+.++.+.. |+..++.+.-+... . -+.-.-..+.+++.|..
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~--------gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~ 73 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQ--------GKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAK 73 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHC--------CCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhh
Confidence 479999999998887777777665432 23323333322100 0 01122234567788888
Q ss_pred cCCeEEEEEccccCCCCCCCChHHHHH
Q 005288 150 MGIRCEIVRCDWLDGRPKQGHLQEAAR 176 (704)
Q Consensus 150 LGIp~~Iv~~~~~~~~~~~gniEe~AR 176 (704)
.|+|+.+++... +.|..-+.+....
T Consensus 74 ~~ipv~~I~~~~--Y~~~~~~~~~~~~ 98 (104)
T PRK09590 74 VGKPVVQIPPQA--YIPIPMGIEKMAK 98 (104)
T ss_pred cCCCEEEeCHHH--cCCCccCHHHHHH
Confidence 999998876443 2232234554433
No 145
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=32.36 E-value=4.2e+02 Score=27.57 Aligned_cols=102 Identities=15% Similarity=0.176 Sum_probs=51.5
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhh-hhCCCCCCCCCCCCCCcEEEEEEe--CCCCCCc-H-HHHHHHHHHHHhcCCeEEE
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVD--HGLREES-K-EEANIVSHRVSDMGIRCEI 156 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~-~~~g~~~~~~~~gi~~~L~AVhVD--HGLR~eS-~-~Eae~V~kl~~~LGIp~~I 156 (704)
++..++|||||..=..++..+... ..... .| .+++.+.+| .|.-..+ . ......+.+++.++++...
T Consensus 32 ~~~~~iglsgG~T~~~~~~~L~~~~~~~~~-------~~-~~v~v~~~DEr~gv~~~~~~s~~~~~~~~l~~~~~~~~~~ 103 (261)
T PRK00443 32 ERPFVLGLATGSSPLETYKALIELHKAGKV-------DF-SRVTTFNLDEYVGLPADHPESYRYFMRENFFDHVDIPPEN 103 (261)
T ss_pred CCceEEEecCCCCHHHHHHHHHHHhhhcCC-------ch-HHeEEEeCceecCCCCCChHHHHHHHHHHHhccCCCCHHH
Confidence 345789999998766666655421 11111 12 368888898 4553221 1 1222344577788876544
Q ss_pred EEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeeccc
Q 005288 157 VRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199 (704)
Q Consensus 157 v~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGH 199 (704)
+.... ....+.+..++. |+-..+ ...++|.+++|=
T Consensus 104 ~~~p~----~~~~~~~~~~~~--~~~~l~--~~~~~Dl~llGi 138 (261)
T PRK00443 104 INLLN----GNAPDPEAECRR--YEEKIK--SAGGIDLQILGI 138 (261)
T ss_pred eecCC----CCCcCHHHHHHH--HHHHHH--HcCCCCEEEEcc
Confidence 43221 111234555554 322111 123577777773
No 146
>PRK06852 aldolase; Validated
Probab=31.84 E-value=3.5e+02 Score=29.86 Aligned_cols=106 Identities=8% Similarity=-0.123 Sum_probs=57.1
Q ss_pred CCEEEEEEcCC----------hhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCC--cHHHHHHHHHHHHh
Q 005288 82 HHRIALGVSGG----------PDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE--SKEEANIVSHRVSD 149 (704)
Q Consensus 82 ~~kVlVAVSGG----------vDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~e--S~~Eae~V~kl~~~ 149 (704)
+..++|=+||+ ++| .+..-..++.+.|. ..+++-.-+.+||+.|=..| .-++...+.+-|.+
T Consensus 92 ~~~lIlkl~~~t~l~~~~~~~p~~-~l~~sVeeAvrlG~-----~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~ 165 (304)
T PRK06852 92 DVPYLVKLNSKTNLVKTSQRDPLS-RQLLDVEQVVEFKE-----NSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHK 165 (304)
T ss_pred CCcEEEEECCCCCcCCcccCCccc-cceecHHHHHhcCC-----ccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHH
Confidence 45699999986 445 44433445444331 11233456788999984221 12244556667899
Q ss_pred cCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeeccc
Q 005288 150 MGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199 (704)
Q Consensus 150 LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGH 199 (704)
+|+|+...-...-........++. +.+ ..++|.++|+|.|=+-=
T Consensus 166 ~GlPll~~~yprG~~i~~~~~~~~----ia~--aaRiaaELGADIVKv~y 209 (304)
T PRK06852 166 HGLIAVLWIYPRGKAVKDEKDPHL----IAG--AAGVAACLGADFVKVNY 209 (304)
T ss_pred hCCcEEEEeeccCcccCCCccHHH----HHH--HHHHHHHHcCCEEEecC
Confidence 999986632211100011112222 222 34788999999775543
No 147
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=31.58 E-value=63 Score=30.26 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=21.4
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCC
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGG 109 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g 109 (704)
+||+++++|+....-...++.++.+.|
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~g 27 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRAG 27 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTTT
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhCC
Confidence 489999999999999888888876654
No 148
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.40 E-value=1.9e+02 Score=28.07 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEEEcCCh----------hHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCC
Q 005288 68 EAFSRRMAMAGLKPHHRIALGVSGGP----------DSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE 135 (704)
Q Consensus 68 e~f~~~i~~~~l~~~~kVlVAVSGGv----------DSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~e 135 (704)
+.|.+.+.+ +..+++|.++++|++ |-.++.-+..+..+. ...++..|||+-|-|+.
T Consensus 13 e~~~~~~~~--~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~----------ap~~~~~v~v~VG~rp~ 78 (128)
T KOG3425|consen 13 ESFEETLKN--VENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKH----------APEDVHFVHVYVGNRPY 78 (128)
T ss_pred HHHHHHHHH--HhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHh----------CCCceEEEEEEecCCCc
Confidence 445555544 355688999999999 555665566655442 23478899999998864
No 149
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=31.04 E-value=1.2e+02 Score=29.62 Aligned_cols=63 Identities=10% Similarity=0.107 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHh-cCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeeccccc
Q 005288 137 KEEANIVSHRVSD-MGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (704)
Q Consensus 137 ~~Eae~V~kl~~~-LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHha 201 (704)
+.+.+.+.+.+++ .++.+.++|-=.... ....+..... ..-...|.++|+++|+..|++.|..
T Consensus 126 ~~~~~~l~~~~~~~~~~~lvviD~l~~~~-~~~~~~~~~~-~~~~~~l~~la~~~~~~vi~v~H~~ 189 (193)
T PF13481_consen 126 DEDLEELEAALKELYGPDLVVIDPLQSLH-DGDENSNSAV-AQLMQELKRLAKEYGVAVILVHHTN 189 (193)
T ss_dssp HHHHHHHHHHHTT----SEEEEE-GGGG---S-TT-HHHH-HHHHHHHHHHHHHH--EEEEEEEE-
T ss_pred hHHHHHHHHHHhhcCCCcEEEEcCHHHHh-cCCCCCHHHH-HHHHHHHHHHHHHcCCEEEEEECCC
Confidence 4556677787777 789998887322211 1122323332 4445668899999999988888864
No 150
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=30.17 E-value=9e+02 Score=27.88 Aligned_cols=124 Identities=13% Similarity=0.121 Sum_probs=63.5
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCCCEEE--EEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeC--CCC--
Q 005288 60 LTDMTKYREAFSRRMAMAGLKPHHRIA--LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH--GLR-- 133 (704)
Q Consensus 60 ~~~~~~~~e~f~~~i~~~~l~~~~kVl--VAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDH--GLR-- 133 (704)
+-..++....+........ ..+-+|. |.++||++..+.-.. ..| .+...+++-. +++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~-~~~~~iGaHvSiaGG~~~a~~~a~-----~~g-----------~~afqiF~~npr~w~~~ 171 (413)
T PTZ00372 109 PKPNEDVDNAFNKIAELAE-KSNVYIGAHVSASGGVDNSPINAY-----NIA-----------GQAFALFLKNQRTWNSP 171 (413)
T ss_pred CCcchhhHHHHHHHHHHhh-ccCceEEEEEeccccHHHHHHHHH-----HcC-----------CCEEEEEcCCCccCCCC
Confidence 3335555555554332211 1112232 456899988543322 111 2344555543 343
Q ss_pred CCcHHHHHHHHHHHHhcCCeE--EEEEccccCCCCCCC-ChHHHHHHH-HHHHHHHHHHHcCCCEeec--ccccc
Q 005288 134 EESKEEANIVSHRVSDMGIRC--EIVRCDWLDGRPKQG-HLQEAARDM-RYRLFQKVCIQHQIGVLLI--AHHAD 202 (704)
Q Consensus 134 ~eS~~Eae~V~kl~~~LGIp~--~Iv~~~~~~~~~~~g-niEe~AR~~-RY~~L~~~A~e~G~~~Lat--GHhaD 202 (704)
+-++++++..++.++++|+.. .+...... -.... +.+...+.+ ++.--.+.|.+.|+.+|++ |++..
T Consensus 172 ~~~~~~~~~f~~~~~~~gi~~~~i~~HapYl--INLASpd~e~rekSv~~~~~eL~rA~~LGa~~VV~HPGs~~~ 244 (413)
T PTZ00372 172 PLSDETIDKFKENCKKYNYDPKFILPHGSYL--INLANPDKEKREKSYDAFLDDLQRCEQLGIKLYNFHPGSTVG 244 (413)
T ss_pred CCCHHHHHHHHHHHHHcCCCcceEEeecCce--ecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCCC
Confidence 457889999999999998753 34444322 11111 222222211 1122346788999998885 76643
No 151
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=28.20 E-value=6.3e+02 Score=27.59 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCCceeeCCCCCCC-chhHHHHHHhc
Q 005288 259 DDMYKICQGGNRDWVEDPTNRSP-LFVRNRIRMSL 292 (704)
Q Consensus 259 ~EIr~y~~~~gLp~veDpSN~d~-~y~RNrIR~~L 292 (704)
+.+.++.+..++|.+---+.--+ .-.|..|+.-+
T Consensus 189 ~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi 223 (283)
T PRK07998 189 PLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYKV 223 (283)
T ss_pred HHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcCC
Confidence 55566666667777665544333 22344444444
No 152
>PRK08227 autoinducer 2 aldolase; Validated
Probab=27.17 E-value=2.4e+02 Score=30.42 Aligned_cols=97 Identities=16% Similarity=0.100 Sum_probs=54.5
Q ss_pred CCEEEEEEcCC------hhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCC--cHHHHHHHHHHHHhcCCe
Q 005288 82 HHRIALGVSGG------PDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE--SKEEANIVSHRVSDMGIR 153 (704)
Q Consensus 82 ~~kVlVAVSGG------vDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~e--S~~Eae~V~kl~~~LGIp 153 (704)
+..+++=+||| .+...+..-..++.+.|. .-+.+||+.|-..| .-++...+.+-|.++|+|
T Consensus 74 ~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGA-----------dAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~P 142 (264)
T PRK08227 74 NKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNA-----------CAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMP 142 (264)
T ss_pred CCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCC-----------CEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence 45699999997 332333332344444432 45688999994322 122445566788999999
Q ss_pred EEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecc
Q 005288 154 CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198 (704)
Q Consensus 154 ~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatG 198 (704)
+.... +.......... --..-.+++.++|+|.|=+-
T Consensus 143 lla~~-------prG~~~~~~~~--~ia~aaRiaaELGADiVK~~ 178 (264)
T PRK08227 143 VMAVT-------AVGKDMVRDAR--YFSLATRIAAEMGAQIIKTY 178 (264)
T ss_pred EEEEe-------cCCCCcCchHH--HHHHHHHHHHHHcCCEEecC
Confidence 87632 11111111111 22234578889999877543
No 153
>PRK05920 aromatic acid decarboxylase; Validated
Probab=26.97 E-value=1.2e+02 Score=31.53 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=23.4
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCC
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGG 109 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g 109 (704)
++||++|+|||.=+.-...+++++.+.|
T Consensus 3 ~krIllgITGsiaa~ka~~lvr~L~~~g 30 (204)
T PRK05920 3 MKRIVLAITGASGAIYGVRLLECLLAAD 30 (204)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHHCC
Confidence 5789999999998887888888886654
No 154
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=26.96 E-value=1.1e+02 Score=33.23 Aligned_cols=80 Identities=14% Similarity=0.207 Sum_probs=48.1
Q ss_pred CcHHHHHHHHHHHHhcCCeEEEEEccccCCCC-CCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccc--------hhH
Q 005288 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRP-KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD--------DQA 205 (704)
Q Consensus 135 eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~~~-~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaD--------Dqa 205 (704)
...+..+.-.++|+++|++...++.-|..... ...++-..--..-..-+.++|++.|+..++-.|+.+ ++.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~ 108 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQL 108 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHH
Confidence 35778888899999999999999988863110 000110111112233467789999999999999876 455
Q ss_pred HHHHHHHhc
Q 005288 206 ELFILRLSR 214 (704)
Q Consensus 206 ET~LmrL~R 214 (704)
|..|-++..
T Consensus 109 ~~~f~~~~~ 117 (273)
T PF10566_consen 109 DEAFKLYAK 117 (273)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544433
No 155
>PLN02360 probable 6-phosphogluconolactonase
Probab=26.45 E-value=3.6e+02 Score=28.76 Aligned_cols=83 Identities=10% Similarity=0.133 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHc---CCCCCCEEEEEEcCChhHHHHHHHHHhh-hhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcH-
Q 005288 63 MTKYREAFSRRMAMA---GLKPHHRIALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGLREESK- 137 (704)
Q Consensus 63 ~~~~~e~f~~~i~~~---~l~~~~kVlVAVSGGvDSmaLL~LL~~~-~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~- 137 (704)
.+++.+...+.+.+. .++++..+.+|+|||. ..-++..|.+. ..... .| .+++.+.+|...-+...
T Consensus 19 ~~el~~~~a~~i~~~~~~a~~~~~~~~lalsGGS-~~~~~~~L~~~~~~~~i-------dW-~~v~~f~~DER~Vp~~~~ 89 (268)
T PLN02360 19 LDELSTDLAEYIAELSEASVKERGVFAIALSGGS-LISFMGKLCEAPYNKTV-------DW-AKWYIFWADERVVAKNHA 89 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCC-HHHHHHHHhccccccCC-------CC-ceEEEEeeecccCCCCCc
Confidence 444444444433321 2455678999999996 33333333221 00111 22 37888889986543211
Q ss_pred -HHHHHHHH-HHHhcCCeE
Q 005288 138 -EEANIVSH-RVSDMGIRC 154 (704)
Q Consensus 138 -~Eae~V~k-l~~~LGIp~ 154 (704)
.-...+++ +....+++-
T Consensus 90 ~SN~~~~r~~Ll~~~~i~~ 108 (268)
T PLN02360 90 DSNYKLAKDGLLSKVPVVP 108 (268)
T ss_pred chHHHHHHHHhhccCCCCh
Confidence 12233444 445555553
No 156
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=26.17 E-value=6e+02 Score=26.74 Aligned_cols=111 Identities=13% Similarity=0.157 Sum_probs=57.3
Q ss_pred HHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhC-CCCCCCCCCCCCCcEEEEEEeCCC--CCCc-HHHHHHHHH
Q 005288 70 FSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGLLAITVDHGL--REES-KEEANIVSH 145 (704)
Q Consensus 70 f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~-g~~~~~~~~gi~~~L~AVhVDHGL--R~eS-~~Eae~V~k 145 (704)
|...+..+.....+++.+|+|||..-..+...|.+.... .. .| .+++.+.+|-.+ -.+. ..-..++++
T Consensus 20 i~~~i~~~~~~~~~~~~i~lsgGstP~~~y~~L~~~~~~~~i-------~w-~~v~~f~~DEr~~vp~~~~~Sn~~~~~~ 91 (259)
T TIGR00502 20 IANRINEFKPTAARPFVLGLPTGGTPIGTYKQLIELHQAGKI-------SF-QNVTTFNMDEYAGLSEEHPESYHSFMHN 91 (259)
T ss_pred HHHHHHHhCccccCceEEEEcCCCChHHHHHHHHHHhhccCC-------ch-hHeEEEeCeecCCCCCCchHHHHHHHHH
Confidence 333333322334567999999998888777766543221 11 12 378888899764 2222 122333444
Q ss_pred -HHHhcCCeE-EEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHH-cCCCEeecc
Q 005288 146 -RVSDMGIRC-EIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQ-HQIGVLLIA 198 (704)
Q Consensus 146 -l~~~LGIp~-~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e-~G~~~LatG 198 (704)
+....+++- .+...+ ....++++.|+. |+... ++ .++|.+++|
T Consensus 92 ~l~~~~~i~~~~i~~~~-----~~~~~~~~~a~~--y~~~i---~~~~~~Dl~llG 137 (259)
T TIGR00502 92 NFFQHIDIKPENINILN-----GNAPDLEAECRR--YEEKI---RSYGGIDLFMGG 137 (259)
T ss_pred HhcccCCCCHHHEecCC-----CCccCHHHHHHH--HHHHH---HHcCCCCEEEEc
Confidence 344555543 111111 111256777764 43222 22 357877776
No 157
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=25.62 E-value=2e+02 Score=29.28 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=43.9
Q ss_pred EEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEE
Q 005288 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIV 157 (704)
Q Consensus 85 VlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv 157 (704)
++||.+|--=++.++.|+..+...+ .++..++.|.. | ..-.++.+.+++.+|+|++..
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~~-----------~~v~lis~D~~-R---~ga~eQL~~~a~~l~vp~~~~ 62 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLKG-----------KKVALISADTY-R---IGAVEQLKTYAEILGVPFYVA 62 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT-------------EEEEEESTS-S---THHHHHHHHHHHHHTEEEEES
T ss_pred EEECCCCCchHhHHHHHHHHHhhcc-----------ccceeecCCCC-C---ccHHHHHHHHHHHhccccchh
Confidence 6789999888999999988776543 26778889964 3 334567899999999998753
No 158
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=24.83 E-value=1.2e+02 Score=30.71 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=22.8
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCC
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGG 109 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g 109 (704)
+||++|+||+.-+.-...++..+++.|
T Consensus 2 k~Ill~vtGsiaa~~~~~li~~L~~~g 28 (182)
T PRK07313 2 KNILLAVSGSIAAYKAADLTSQLTKRG 28 (182)
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHHCC
Confidence 689999999999998888888876544
No 159
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=24.77 E-value=5.7e+02 Score=25.98 Aligned_cols=89 Identities=13% Similarity=0.190 Sum_probs=51.3
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~ 162 (704)
.||+|-+||+...+. .++..+...+ ...++.+|..|+. + ..+.++|+++|||+++.+...
T Consensus 1 ~riail~sg~gs~~~--~ll~~~~~~~---------l~~~I~~vi~~~~---~-----~~~~~~A~~~gip~~~~~~~~- 60 (190)
T TIGR00639 1 KRIVVLISGNGSNLQ--AIIDACKEGK---------IPASVVLVISNKP---D-----AYGLERAAQAGIPTFVLSLKD- 60 (190)
T ss_pred CeEEEEEcCCChhHH--HHHHHHHcCC---------CCceEEEEEECCc---c-----chHHHHHHHcCCCEEEECccc-
Confidence 379999999876544 3344443222 2235666666763 1 245788899999988653211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeeccccc
Q 005288 163 DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (704)
Q Consensus 163 ~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHha 201 (704)
.. + |...-..+.++.++.+.|++++....
T Consensus 61 -~~----~-----~~~~~~~~~~~l~~~~~D~iv~~~~~ 89 (190)
T TIGR00639 61 -FP----S-----REAFDQAIIEELRAHEVDLVVLAGFM 89 (190)
T ss_pred -cC----c-----hhhhhHHHHHHHHhcCCCEEEEeCcc
Confidence 00 1 11111235566778889998876543
No 160
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=24.35 E-value=5.1e+02 Score=26.85 Aligned_cols=88 Identities=14% Similarity=0.148 Sum_probs=50.8
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccC
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~ 163 (704)
||+|-+||+---+-.+ +..+ +.+ .++.++.+|..|..- ..+.++|+++|||+++.... .
T Consensus 1 ki~vl~Sg~Gsn~~al--~~~~-~~~--------~l~~~i~~visn~~~--------~~~~~~A~~~gIp~~~~~~~--~ 59 (207)
T PLN02331 1 KLAVFVSGGGSNFRAI--HDAC-LDG--------RVNGDVVVVVTNKPG--------CGGAEYARENGIPVLVYPKT--K 59 (207)
T ss_pred CEEEEEeCCChhHHHH--HHHH-HcC--------CCCeEEEEEEEeCCC--------ChHHHHHHHhCCCEEEeccc--c
Confidence 5889999988665443 3322 222 133467777777631 23577889999999765321 1
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeeccccc
Q 005288 164 GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (704)
Q Consensus 164 ~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHha 201 (704)
..+ +...-..+.+..++.+.|.++++.-.
T Consensus 60 ~~~---------~~~~~~~~~~~l~~~~~Dliv~agy~ 88 (207)
T PLN02331 60 GEP---------DGLSPDELVDALRGAGVDFVLLAGYL 88 (207)
T ss_pred CCC---------cccchHHHHHHHHhcCCCEEEEeCcc
Confidence 001 11111223455667889999887543
No 161
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=24.19 E-value=6.2e+02 Score=30.81 Aligned_cols=106 Identities=17% Similarity=0.276 Sum_probs=55.7
Q ss_pred CCCCCEEEEEEcCChhHHHHHHHHHhhh-hCCCCCCCCCCCCCCcEEEEEEeCCC--CCCcHH-HHHHHHH-HHHhcCCe
Q 005288 79 LKPHHRIALGVSGGPDSMALCVLTAGWK-TGGFNQNGEAGEFIDGLLAITVDHGL--REESKE-EANIVSH-RVSDMGIR 153 (704)
Q Consensus 79 l~~~~kVlVAVSGGvDSmaLL~LL~~~~-~~g~~~~~~~~gi~~~L~AVhVDHGL--R~eS~~-Eae~V~k-l~~~LGIp 153 (704)
+..++.+.+|+|||..=.-+...|.+.. ..+.+ | .+++.+.+|.-. -+++.+ -..++++ +....+|+
T Consensus 55 ~~~~~~~~laLsGGsTP~~~Y~~L~~~~~~~~l~-------w-~~V~~F~~DEr~~vp~d~~~Sn~~~~re~L~~~i~Ip 126 (652)
T PRK02122 55 QAEGKPCVLGLATGSSPIGVYAELIRMHREEGLS-------F-KNVITFNLDEYYPMQPDSLQSYHRFMKENLFDHVDIP 126 (652)
T ss_pred HHhCCCEEEEEcCCcCHHHHHHHHHhhhhccCCC-------c-hheEEEeCeeccCCCCCcHHHHHHHHHHHhhccCCCC
Confidence 3456789999999988777766665432 22222 2 368888888754 222221 2233443 44555665
Q ss_pred EEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecc
Q 005288 154 CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198 (704)
Q Consensus 154 ~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatG 198 (704)
-.-+... .+......+++.|+. |+. .+.+..|+|.+++|
T Consensus 127 ~~ni~~~--dg~~~~~~~~~~~~~--Ye~--~I~~~gg~DlvLLG 165 (652)
T PRK02122 127 PENIHIP--DGTIPKEEIDEYCRD--YEE--KIEAAGGIDFQLLG 165 (652)
T ss_pred HHHeecC--CCccCcCCHHHHHHH--HHH--HHHhhCCCcEEEeC
Confidence 3322221 111011246667764 442 22222368888876
No 162
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=23.63 E-value=1.3e+02 Score=31.02 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=23.0
Q ss_pred CCCEEEEEEcCChhHHH-HHHHHHhhhhCC
Q 005288 81 PHHRIALGVSGGPDSMA-LCVLTAGWKTGG 109 (704)
Q Consensus 81 ~~~kVlVAVSGGvDSma-LL~LL~~~~~~g 109 (704)
.+++|++|+|||.=+.- ...+++.+.+.|
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G 33 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEG 33 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCc
Confidence 46899999999988877 577888776554
No 163
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=23.52 E-value=1.3e+02 Score=27.11 Aligned_cols=69 Identities=14% Similarity=0.095 Sum_probs=40.6
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEe----CC-------CCCCcHHHHHHHHHHHHhcCC
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD----HG-------LREESKEEANIVSHRVSDMGI 152 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVD----HG-------LR~eS~~Eae~V~kl~~~LGI 152 (704)
+|++++.+|.-|+.++.-+.++...+ |+..++.+..+. .. +-|.-..+.+.+++.+...++
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~ 72 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKR--------GIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGI 72 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHC--------CCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCC
Confidence 58999999999988777666654432 233333333321 00 011223345566666777888
Q ss_pred eEEEEEcc
Q 005288 153 RCEIVRCD 160 (704)
Q Consensus 153 p~~Iv~~~ 160 (704)
|+.+++..
T Consensus 73 pv~~I~~~ 80 (96)
T cd05564 73 PVAVIDMM 80 (96)
T ss_pred cEEEcChH
Confidence 88877644
No 164
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=23.09 E-value=1.2e+02 Score=30.68 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.1
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCC
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGG 109 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g 109 (704)
||+||+|||.-..-...++..+.+.|
T Consensus 1 ~illgvtGsiaa~ka~~lir~L~~~g 26 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEVLKEAG 26 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHHCC
Confidence 58999999999888888988886654
No 165
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=23.03 E-value=6.3e+02 Score=29.45 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=32.5
Q ss_pred EEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCC-CchhHHHHHHhchhc
Q 005288 248 LLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRS-PLFVRNRIRMSLGDL 295 (704)
Q Consensus 248 ~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d-~~y~RNrIR~~L~pl 295 (704)
-|+-|-++.+|+||.++.++. +++..+++..+ ..+.|..+|+.+...
T Consensus 149 HIV~PAlH~~reqIa~if~ek-l~~~~~~~~eel~~~aR~~lR~kfl~A 196 (459)
T COG1139 149 HIVAPALHKNREQIAEIFKEK-LGYEGEDTPEELTAAAREFLREKFLKA 196 (459)
T ss_pred ceeccccccCHHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 389999999999999998765 33332222222 268888888887543
No 166
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=22.89 E-value=1.4e+02 Score=30.03 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=21.6
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCC
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGG 109 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g 109 (704)
+||++|+||+.-..-...++..+++.+
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~~~g 27 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLTKLG 27 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHHHCC
Confidence 479999999988887788888776543
No 167
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=22.62 E-value=4.7e+02 Score=28.38 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHH
Q 005288 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143 (704)
Q Consensus 64 ~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V 143 (704)
.+....+.+.+...++.++++|+|...-++|.+++..-+.. . ..+++.+|.+.. . +..
T Consensus 6 ~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~---~-------------G~~~~~~~~~~~---~---~~~ 63 (436)
T TIGR01923 6 DCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLL---L-------------GAEIAMLNTRLT---E---NER 63 (436)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHh---c-------------CcEEEecCcCCC---H---HHH
Confidence 34455667777778899999999999999998887654432 2 235677888763 2 234
Q ss_pred HHHHHhcCCeEEEEE
Q 005288 144 SHRVSDMGIRCEIVR 158 (704)
Q Consensus 144 ~kl~~~LGIp~~Iv~ 158 (704)
...+++.+..+.+.+
T Consensus 64 ~~~~~~~~~~~~i~~ 78 (436)
T TIGR01923 64 TNQLEDLDVQLLLTD 78 (436)
T ss_pred HHHHHhcCCCEEEEc
Confidence 556677888876654
No 168
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=22.62 E-value=1.3e+02 Score=30.67 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.6
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhh
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKT 107 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~ 107 (704)
+||++|+|||+-+.-...++..+.+
T Consensus 2 k~IllgVTGsiaa~ka~~l~~~L~k 26 (185)
T PRK06029 2 KRLIVGISGASGAIYGVRLLQVLRD 26 (185)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHh
Confidence 5899999999998888888888755
No 169
>PRK13390 acyl-CoA synthetase; Provisional
Probab=22.02 E-value=4.5e+02 Score=29.41 Aligned_cols=73 Identities=23% Similarity=0.323 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHH
Q 005288 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142 (704)
Q Consensus 63 ~~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~ 142 (704)
+.+..+.+.+.+.+.++.++++|++...-|+|.++++.-+... | ..++.+|++++ .++
T Consensus 30 l~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~---G-------------a~~~~l~~~~~---~~~--- 87 (501)
T PRK13390 30 LDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRS---G-------------LYITAINHHLT---APE--- 87 (501)
T ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh---C-------------CEEeccccCCC---HHH---
Confidence 3444555666777889999999999999999999887655432 2 35677898874 222
Q ss_pred HHHHHHhcCCeEEEE
Q 005288 143 VSHRVSDMGIRCEIV 157 (704)
Q Consensus 143 V~kl~~~LGIp~~Iv 157 (704)
+..++...+..+.+.
T Consensus 88 ~~~~~~~~~~~~~i~ 102 (501)
T PRK13390 88 ADYIVGDSGARVLVA 102 (501)
T ss_pred HHHHHHhcCCcEEEE
Confidence 455555666666554
No 170
>PRK10867 signal recognition particle protein; Provisional
Probab=21.62 E-value=6.4e+02 Score=29.10 Aligned_cols=85 Identities=12% Similarity=0.121 Sum_probs=51.8
Q ss_pred EEEEEcCChhHHHHHHHHHhhhhC-CCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccC
Q 005288 85 IALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (704)
Q Consensus 85 VlVAVSGGvDSmaLL~LL~~~~~~-g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~ 163 (704)
++++..|--=|+.++.|+..+... |. ++..|..|. .| ....+..+.+++..|+|++....
T Consensus 104 ~~vG~~GsGKTTtaakLA~~l~~~~G~-----------kV~lV~~D~-~R---~aa~eQL~~~a~~~gv~v~~~~~---- 164 (433)
T PRK10867 104 MMVGLQGAGKTTTAGKLAKYLKKKKKK-----------KVLLVAADV-YR---PAAIEQLKTLGEQIGVPVFPSGD---- 164 (433)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhcCC-----------cEEEEEccc-cc---hHHHHHHHHHHhhcCCeEEecCC----
Confidence 456666767788888887766554 32 566666775 23 33456677889999999764311
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeec
Q 005288 164 GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197 (704)
Q Consensus 164 ~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~Lat 197 (704)
..++.+.++.. .+.++..++++|++
T Consensus 165 ----~~dp~~i~~~a-----~~~a~~~~~DvVII 189 (433)
T PRK10867 165 ----GQDPVDIAKAA-----LEEAKENGYDVVIV 189 (433)
T ss_pred ----CCCHHHHHHHH-----HHHHHhcCCCEEEE
Confidence 12444444322 13456667887776
No 171
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=21.35 E-value=5.3e+02 Score=26.91 Aligned_cols=89 Identities=17% Similarity=0.187 Sum_probs=56.6
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccC
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~ 163 (704)
||+|-.||+---+=.+ + +....+. ++.++.+|..|+.- .++.+.+++.|||..+++....
T Consensus 2 ki~VlaSG~GSNlqai--i-da~~~~~--------~~a~i~~Visd~~~--------A~~lerA~~~gIpt~~~~~k~~- 61 (200)
T COG0299 2 KIAVLASGNGSNLQAI--I-DAIKGGK--------LDAEIVAVISDKAD--------AYALERAAKAGIPTVVLDRKEF- 61 (200)
T ss_pred eEEEEEeCCcccHHHH--H-HHHhcCC--------CCcEEEEEEeCCCC--------CHHHHHHHHcCCCEEEeccccC-
Confidence 7899999987544322 2 2222221 33478888888742 3578889999999987753211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccc
Q 005288 164 GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (704)
Q Consensus 164 ~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaD 202 (704)
+ .|...-+.+.+..++.+.+.|++|=...
T Consensus 62 --~--------~r~~~d~~l~~~l~~~~~dlvvLAGyMr 90 (200)
T COG0299 62 --P--------SREAFDRALVEALDEYGPDLVVLAGYMR 90 (200)
T ss_pred --C--------CHHHHHHHHHHHHHhcCCCEEEEcchHH
Confidence 1 2333334567778889999999984433
No 172
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=20.76 E-value=2.7e+02 Score=28.48 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=48.7
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~ 162 (704)
.||+|-+||+.... ..++..+...+ +...+.++.-|+. +. .+.++|++.|||+...+....
T Consensus 2 ~ki~vl~sg~gs~~--~~ll~~~~~~~---------~~~~I~~vvs~~~---~~-----~~~~~a~~~gIp~~~~~~~~~ 62 (200)
T PRK05647 2 KRIVVLASGNGSNL--QAIIDACAAGQ---------LPAEIVAVISDRP---DA-----YGLERAEAAGIPTFVLDHKDF 62 (200)
T ss_pred ceEEEEEcCCChhH--HHHHHHHHcCC---------CCcEEEEEEecCc---cc-----hHHHHHHHcCCCEEEECcccc
Confidence 47999999984433 33444443222 2235555555653 11 268889999999876542110
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccc
Q 005288 163 DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200 (704)
Q Consensus 163 ~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHh 200 (704)
.+.+... ..+.++.++.+.|.+++...
T Consensus 63 ------~~~~~~~-----~~~~~~l~~~~~D~iv~~~~ 89 (200)
T PRK05647 63 ------PSREAFD-----AALVEALDAYQPDLVVLAGF 89 (200)
T ss_pred ------CchhHhH-----HHHHHHHHHhCcCEEEhHHh
Confidence 0111111 12445566778998887543
No 173
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.37 E-value=4.9e+02 Score=28.06 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=65.9
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCCCEEEEEEc---CCh---hHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCC
Q 005288 59 YLTDMTKYREAFSRRMAMAGLKPHHRIALGVS---GGP---DSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132 (704)
Q Consensus 59 ~~~~~~~~~e~f~~~i~~~~l~~~~kVlVAVS---GGv---DSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGL 132 (704)
...+.++..+.++..+.+. +-++++. |+. |=-+|-.++..+.++| ..++|-|.
T Consensus 101 ~~~s~~e~~~rl~~a~~~v------~~~~GlnNhmGs~~tsn~~aM~~~m~~Lk~r~---------------l~flDs~T 159 (250)
T COG2861 101 PGMSAEEILRRLRKAMNKV------PDAVGLNNHMGSRFTSNEDAMEKLMEALKERG---------------LYFLDSGT 159 (250)
T ss_pred cCCCHHHHHHHHHHHHhhC------ccceeehhhhhhhhcCcHHHHHHHHHHHHHCC---------------eEEEcccc
Confidence 4555677777777777653 1222222 221 2223444555554443 47899997
Q ss_pred CCCcHHHHHHHHHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccch
Q 005288 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (704)
Q Consensus 133 R~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDD 203 (704)
-+.| ...+++++.|||+...++- .... -+..+.-| ..+-+.+.|+++| ..|++||-.+-
T Consensus 160 ~a~S-----~a~~iAk~~gVp~~~rdvf---LD~e-~~~~~V~k--ql~~~~~~Ark~G-~ai~IGh~~~~ 218 (250)
T COG2861 160 IANS-----LAGKIAKEIGVPVIKRDVF---LDDE-DTEAAVLK--QLDAAEKLARKNG-SAIGIGHPHKN 218 (250)
T ss_pred cccc-----hhhhhHhhcCCceeeeeee---ecCc-CCHHHHHH--HHHHHHHHHHhcC-ceEEecCCchh
Confidence 6554 2466788999998766542 1111 12233333 3456889999987 57999998664
No 174
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=20.10 E-value=6.7e+02 Score=27.01 Aligned_cols=72 Identities=15% Similarity=0.229 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHH
Q 005288 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143 (704)
Q Consensus 64 ~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V 143 (704)
.+..+++...+.+.+++++++|++.+.-+.+..++.+-+... ...++-+|..+ +.+ .+
T Consensus 28 ~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~----------------G~~~v~l~~~~---~~~---~~ 85 (417)
T PF00501_consen 28 YERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRA----------------GAIPVPLDPSL---SED---EL 85 (417)
T ss_dssp HHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHT----------------T-EEEEEETTS---SHH---HH
T ss_pred HHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccc----------------ccccccccccc---ccc---cc
Confidence 333444555666678999999999999999998877655432 24678899876 233 34
Q ss_pred HHHHHhcCCeEEEE
Q 005288 144 SHRVSDMGIRCEIV 157 (704)
Q Consensus 144 ~kl~~~LGIp~~Iv 157 (704)
..+.++.+..+.+.
T Consensus 86 ~~~l~~~~~~~ii~ 99 (417)
T PF00501_consen 86 RHILRQSGPKVIIT 99 (417)
T ss_dssp HHHHHHHTESEEEE
T ss_pred cccccccceeEEEE
Confidence 55666777777664
Done!