Query 005288
Match_columns 704
No_of_seqs 396 out of 2485
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 21:01:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005288.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005288hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2k_A TRNA(Ile)-lysidine synt 100.0 3E-45 1E-49 406.2 27.2 303 69-398 4-313 (464)
2 1wy5_A TILS, hypothetical UPF0 100.0 8.5E-45 2.9E-49 383.6 21.1 293 63-400 4-302 (317)
3 1ni5_A Putative cell cycle pro 100.0 2.3E-43 8E-48 388.0 28.1 298 79-416 10-312 (433)
4 3tqi_A GMP synthase [glutamine 100.0 2E-30 6.7E-35 291.9 11.3 208 33-280 175-408 (527)
5 2ywb_A GMP synthase [glutamine 99.9 2.2E-27 7.6E-32 265.6 16.9 205 34-279 156-383 (503)
6 3k32_A Uncharacterized protein 99.9 3.6E-28 1.2E-32 241.6 4.3 166 83-294 7-179 (203)
7 1gpm_A GMP synthetase, XMP ami 99.9 3.3E-27 1.1E-31 265.5 12.7 207 24-272 155-395 (525)
8 3uow_A GMP synthetase; structu 99.9 1.4E-26 4.6E-31 262.3 16.8 218 24-279 183-436 (556)
9 2vxo_A GMP synthase [glutamine 99.9 7.3E-26 2.5E-30 262.0 13.7 212 33-281 185-445 (697)
10 2der_A TRNA-specific 2-thiouri 99.9 5.7E-24 1.9E-28 230.8 9.3 173 80-283 15-212 (380)
11 2hma_A Probable tRNA (5-methyl 99.9 6.6E-24 2.3E-28 229.9 9.7 173 81-284 8-205 (376)
12 2dpl_A GMP synthetase, GMP syn 99.9 2.8E-23 9.6E-28 219.3 12.8 172 63-272 3-180 (308)
13 3bl5_A Queuosine biosynthesis 99.9 1.9E-23 6.4E-28 206.5 8.6 157 82-271 3-176 (219)
14 2pg3_A Queuosine biosynthesis 99.8 1.9E-21 6.6E-26 195.5 7.7 165 83-280 3-189 (232)
15 2c5s_A THII, probable thiamine 99.8 3.3E-20 1.1E-24 203.1 12.0 157 81-278 186-352 (413)
16 1sur_A PAPS reductase; assimil 99.8 6.4E-20 2.2E-24 182.7 12.8 148 82-273 44-201 (215)
17 2e18_A NH(3)-dependent NAD(+) 99.8 6.6E-19 2.2E-23 180.4 10.3 172 61-283 4-185 (257)
18 1kor_A Argininosuccinate synth 99.8 2E-18 6.8E-23 188.6 13.2 150 83-278 1-170 (400)
19 3p52_A NH(3)-dependent NAD(+) 99.7 2.3E-18 7.8E-23 177.0 9.5 172 62-283 5-189 (249)
20 1xng_A NH(3)-dependent NAD(+) 99.7 1.6E-17 5.5E-22 171.4 14.2 174 63-283 5-188 (268)
21 2nz2_A Argininosuccinate synth 99.7 9.3E-18 3.2E-22 184.0 13.1 161 82-290 5-189 (413)
22 1zun_A Sulfate adenylyltransfe 99.7 2.7E-17 9.3E-22 175.1 15.3 177 83-276 47-228 (325)
23 1k92_A Argininosuccinate synth 99.7 4.9E-17 1.7E-21 179.9 15.2 152 78-274 6-184 (455)
24 2o8v_A Phosphoadenosine phosph 99.7 2.8E-17 9.7E-22 168.4 11.4 148 82-273 45-202 (252)
25 3fiu_A NH(3)-dependent NAD(+) 99.7 9E-17 3.1E-21 165.1 13.5 175 61-283 7-198 (249)
26 2oq2_A Phosphoadenosine phosph 99.6 1.3E-15 4.5E-20 157.0 11.7 152 83-273 42-207 (261)
27 1vl2_A Argininosuccinate synth 99.5 5.2E-14 1.8E-18 154.3 15.6 146 82-274 14-183 (421)
28 2goy_A Adenosine phosphosulfat 99.5 3.1E-13 1.1E-17 140.2 13.3 152 83-273 55-216 (275)
29 1wxi_A NH(3)-dependent NAD(+) 99.4 1E-12 3.5E-17 136.8 12.7 188 49-280 11-213 (275)
30 1vbk_A Hypothetical protein PH 99.4 2.9E-13 9.9E-18 143.0 7.6 121 81-270 178-307 (307)
31 1kqp_A NAD+ synthase, NH(3)-de 99.4 1.2E-12 4E-17 135.9 11.9 185 49-280 10-210 (271)
32 2wsi_A FAD synthetase; transfe 99.4 9.7E-12 3.3E-16 131.2 16.5 151 83-273 54-214 (306)
33 3q4g_A NH(3)-dependent NAD(+) 99.3 8.1E-12 2.8E-16 130.6 13.5 191 45-280 8-222 (279)
34 3n05_A NH(3)-dependent NAD(+) 99.2 1.7E-11 5.6E-16 139.8 11.5 161 63-269 306-473 (590)
35 3dpi_A NAD+ synthetase; ssgcid 99.2 1.2E-10 4.2E-15 122.0 12.7 184 48-278 17-220 (285)
36 3sdb_A Glutamine-dependent NAD 98.8 2.2E-08 7.6E-13 116.1 11.9 156 70-269 352-522 (680)
37 3ilv_A Glutamine-dependent NAD 98.8 2.6E-08 8.8E-13 114.6 12.0 173 71-280 295-518 (634)
38 3fwk_A FMN adenylyltransferase 98.5 1.2E-06 4E-11 92.7 16.0 150 83-273 59-217 (308)
39 3rjz_A N-type ATP pyrophosphat 98.5 3.6E-07 1.2E-11 93.4 10.4 140 83-279 5-149 (237)
40 1ct9_A Asparagine synthetase B 98.2 8.3E-06 2.8E-10 92.5 13.5 139 61-205 206-354 (553)
41 1jgt_A Beta-lactam synthetase; 98.2 4.8E-06 1.6E-10 93.6 10.6 125 62-205 218-354 (513)
42 1q15_A CARA; CMPR, (2S,5S)-5-c 98.1 4.5E-06 1.5E-10 93.6 9.5 125 62-205 215-351 (503)
43 4f4h_A Glutamine dependent NAD 97.7 0.00044 1.5E-08 78.6 15.3 150 71-269 292-453 (565)
44 3hgm_A Universal stress protei 92.5 0.43 1.5E-05 42.5 8.6 94 83-202 3-121 (147)
45 3dlo_A Universal stress protei 91.4 0.82 2.8E-05 42.1 9.3 97 83-203 25-129 (155)
46 1tq8_A Hypothetical protein RV 90.8 2.1 7.3E-05 39.6 11.6 102 79-207 14-135 (163)
47 3idf_A USP-like protein; unive 90.8 1.2 4E-05 39.3 9.4 93 83-203 2-113 (138)
48 3loq_A Universal stress protei 90.5 2.5 8.6E-05 42.4 12.7 99 81-207 169-267 (294)
49 3fdx_A Putative filament prote 89.7 0.17 5.9E-06 45.0 3.0 96 83-201 2-116 (143)
50 3s3t_A Nucleotide-binding prot 89.6 0.65 2.2E-05 41.3 6.7 96 82-203 5-120 (146)
51 1jmv_A USPA, universal stress 89.5 1.2 4.2E-05 39.3 8.4 97 83-205 3-115 (141)
52 3tnj_A Universal stress protei 88.5 1.5 5.1E-05 39.2 8.3 99 82-206 6-124 (150)
53 2z08_A Universal stress protei 88.2 1.8 6.2E-05 38.2 8.6 94 83-202 3-110 (137)
54 1mjh_A Protein (ATP-binding do 88.0 2 6.9E-05 38.9 9.0 95 82-202 5-131 (162)
55 2dum_A Hypothetical protein PH 86.7 2.5 8.4E-05 38.8 8.8 96 82-203 5-129 (170)
56 3fg9_A Protein of universal st 86.4 3.9 0.00013 36.8 9.9 97 82-203 15-131 (156)
57 3n0v_A Formyltetrahydrofolate 81.0 21 0.00071 37.1 13.8 118 59-209 60-184 (286)
58 3mt0_A Uncharacterized protein 80.0 6.8 0.00023 39.2 9.6 95 82-203 7-101 (290)
59 3mt0_A Uncharacterized protein 79.7 5 0.00017 40.2 8.5 98 81-203 133-249 (290)
60 2gm3_A Unknown protein; AT3G01 78.9 13 0.00045 34.0 10.5 99 82-204 5-137 (175)
61 3lou_A Formyltetrahydrofolate 75.7 37 0.0013 35.3 13.8 117 60-209 66-189 (292)
62 3o1l_A Formyltetrahydrofolate 73.3 27 0.00092 36.6 12.1 109 60-201 76-191 (302)
63 3olq_A Universal stress protei 70.7 13 0.00043 37.4 8.7 103 81-206 155-281 (319)
64 1q77_A Hypothetical protein AQ 64.0 22 0.00076 30.9 7.9 37 83-129 5-41 (138)
65 3loq_A Universal stress protei 62.2 11 0.00039 37.5 6.3 99 82-206 22-138 (294)
66 3olq_A Universal stress protei 56.1 29 0.00098 34.8 8.1 96 83-203 8-123 (319)
67 2nly_A BH1492 protein, diverge 51.7 61 0.0021 32.9 9.6 112 60-203 79-196 (245)
68 2qv5_A AGR_C_5032P, uncharacte 51.4 48 0.0016 34.0 8.9 118 61-208 107-227 (261)
69 3cis_A Uncharacterized protein 50.5 37 0.0013 34.0 7.9 39 82-130 171-209 (309)
70 3ab8_A Putative uncharacterize 50.3 21 0.00072 34.9 5.9 37 83-129 1-37 (268)
71 3hj7_A TRNA(Ile)-lysidine synt 49.6 12 0.00041 35.1 3.7 35 641-676 75-109 (142)
72 3obi_A Formyltetrahydrofolate 48.7 41 0.0014 34.9 8.0 117 60-209 60-184 (288)
73 3p9x_A Phosphoribosylglycinami 47.0 1.1E+02 0.0037 30.4 10.3 89 83-201 3-91 (211)
74 3e15_A Glucose-6-phosphate 1-d 43.5 91 0.0031 32.8 9.7 102 79-198 56-165 (312)
75 3cis_A Uncharacterized protein 41.5 46 0.0016 33.3 6.9 39 82-130 19-57 (309)
76 3nrb_A Formyltetrahydrofolate 41.2 37 0.0013 35.2 6.2 115 63-209 62-183 (287)
77 3av3_A Phosphoribosylglycinami 40.4 1.7E+02 0.0058 28.6 10.6 89 83-201 4-92 (212)
78 3da8_A Probable 5'-phosphoribo 37.1 1.8E+02 0.0063 28.7 10.3 95 83-209 13-107 (215)
79 3ab8_A Putative uncharacterize 34.5 69 0.0024 31.1 6.7 90 81-199 153-242 (268)
80 3zqu_A Probable aromatic acid 33.8 47 0.0016 33.0 5.3 28 82-109 4-31 (209)
81 3kcq_A Phosphoribosylglycinami 33.7 88 0.003 31.0 7.3 86 81-201 7-92 (215)
82 2ywr_A Phosphoribosylglycinami 33.3 2.5E+02 0.0086 27.4 10.6 88 83-200 2-89 (216)
83 3auf_A Glycinamide ribonucleot 31.3 3.4E+02 0.011 27.0 11.2 89 83-201 23-111 (229)
84 3nbm_A PTS system, lactose-spe 31.0 1E+02 0.0035 27.3 6.6 69 81-159 5-86 (108)
85 4ds3_A Phosphoribosylglycinami 28.2 2E+02 0.0068 28.3 8.8 89 83-201 8-96 (209)
86 2ejb_A Probable aromatic acid 26.8 78 0.0027 30.7 5.4 27 83-109 2-28 (189)
87 1jkx_A GART;, phosphoribosylgl 26.8 2.9E+02 0.01 27.0 9.7 88 84-201 2-89 (212)
88 1ne7_A Glucosamine-6-phosphate 25.3 3.6E+02 0.012 27.3 10.4 101 82-199 32-138 (289)
89 3jy6_A Transcriptional regulat 23.5 1.5E+02 0.0052 28.5 7.0 16 183-198 29-44 (276)
90 3qjg_A Epidermin biosynthesis 22.4 74 0.0025 30.6 4.3 27 83-109 6-32 (175)
91 3hn6_A Glucosamine-6-phosphate 22.3 3.3E+02 0.011 27.9 9.5 100 82-198 53-158 (289)
92 1g63_A Epidermin modifying enz 22.1 63 0.0022 31.2 3.7 27 83-109 3-29 (181)
93 3ico_A 6PGL, 6-phosphogluconol 21.4 2.3E+02 0.008 28.7 8.1 42 82-132 54-95 (268)
94 3mcu_A Dipicolinate synthase, 20.8 64 0.0022 31.9 3.6 28 82-109 5-33 (207)
No 1
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=100.00 E-value=3e-45 Score=406.17 Aligned_cols=303 Identities=24% Similarity=0.320 Sum_probs=244.3
Q ss_pred HHHHHHHHc-CCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCC-CCcHHHHHHHHHH
Q 005288 69 AFSRRMAMA-GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIVSHR 146 (704)
Q Consensus 69 ~f~~~i~~~-~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR-~eS~~Eae~V~kl 146 (704)
+|.+.+.+. ++.++++|+||||||+||+||+++++++... .+.++.++|||||+| ++|++|+++|+++
T Consensus 4 kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~----------~~~~v~avhvdhglrg~~s~~~~~~v~~~ 73 (464)
T 3a2k_A 4 KVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDE----------WKLQVIAAHVDHMFRGRESEEEMEFVKRF 73 (464)
T ss_dssp HHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHT----------TTCBCEEEEEECTTCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHH----------cCCeEEEEEEECCCCccccHHHHHHHHHH
Confidence 456666665 4788999999999999999999999887543 124789999999999 7788999999999
Q ss_pred HHhcCCeEEEEEccccCC-CCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccc
Q 005288 147 VSDMGIRCEIVRCDWLDG-RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMA 225 (704)
Q Consensus 147 ~~~LGIp~~Iv~~~~~~~-~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~ 225 (704)
|+++|||+++++++.... .....++|+.||.+||++|.++|+++|+++|+||||+|||+||+||++.||+|+.||+||+
T Consensus 74 ~~~lgi~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD~aEt~L~~l~rG~g~~gL~gm~ 153 (464)
T 3a2k_A 74 CVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGDDQVETILMRLVRGSTSKGYAGIP 153 (464)
T ss_dssp HHHTTCEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHHHHHHHHHHHHHHCCCSSSTTCSC
T ss_pred HHHcCCcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChHHHHHHHHHHHHcCCCcccccCCC
Confidence 999999999998865321 1123478999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHHhchhcc---ccCHHH
Q 005288 226 FSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS---SCSFKS 302 (704)
Q Consensus 226 ~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~~L~pl~---~~~f~~ 302 (704)
+.+.. .+..++|||++++|+||++||+++|+||++||||.++.|.||+||+.+.|.. +|.+..
T Consensus 154 ~~~~~--------------~~~~iiRPLl~~~k~eI~~ya~~~gl~~~~d~sn~~~~~~Rn~iR~~~lp~L~~~~p~~~~ 219 (464)
T 3a2k_A 154 VKRPF--------------HGGYLIRPFLAVSRAEIEAYCRQMGLSPRCDPSNEKDDYTRNRFRHHIVPLLRQENPRLHE 219 (464)
T ss_dssp SEEEC--------------SSSEEECGGGGSCHHHHHHHHHHTCCSSCSCTTCCCTTSHHHHHHHTHHHHHHHHCSCHHH
T ss_pred ccccC--------------CCCEEECCCccCcHHHHHHHHHHcCCCeEECCCCCCccchHHHHHHHHHHHHHHHCchHHH
Confidence 75421 2347999999999999999999999999999999999999999999988864 688999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCceeEEeccccCCCchHHHHHHHHHHHHHHHhhCC-cccccCchHHHH
Q 005288 303 ELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQR-QRPVRGSTSKLL 381 (704)
Q Consensus 303 ~L~~~a~~~~~~~~~Ld~~~~~ll~~~v~~~~~g~~~ldl~~l~~~~i~~i~l~r~L~~vl~~is~~-~~p~r~~~l~~L 381 (704)
++.++++.++++.+++++.+++.+.+.+.... +...++...|... .....++++...+...++. ..++....+..+
T Consensus 220 ~l~r~a~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~l~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i 296 (464)
T 3a2k_A 220 RFQQYSEMMAEDEQFLEELAADALNKVMEKQH-RDAALSIGPFLEL--PRPLQRRVLQLLLLRLYGGVPPTLTSVHIGHI 296 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTEECSS-SSCEECHHHHHHS--CHHHHHHHHHHHHHHTTSCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CcEEEEHHHHhcC--CHHHHHHHHHHHHHHccCCCCCCCCHHHHHHH
Confidence 99999999999999999998887776542222 4456776665322 2234556777777765542 345666667777
Q ss_pred HHHHHcCCCCCeeeecc
Q 005288 382 LHYIRTFPCKTSLTAAG 398 (704)
Q Consensus 382 l~~l~~~~~~~~~Tl~G 398 (704)
++.+.....+..+.++|
T Consensus 297 ~~~~~~~~~~~~~~l~~ 313 (464)
T 3a2k_A 297 LMLCERGRPSGMIDLPK 313 (464)
T ss_dssp HHHHHCSCSEEEEECST
T ss_pred HHHHhcCCCCcEEEeCC
Confidence 77776533334566654
No 2
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=100.00 E-value=8.5e-45 Score=383.58 Aligned_cols=293 Identities=18% Similarity=0.236 Sum_probs=236.1
Q ss_pred HHHHHHHHHHHHHHc-CCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCc-EEEEEEeCCCCCCcHHHH
Q 005288 63 MTKYREAFSRRMAMA-GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG-LLAITVDHGLREESKEEA 140 (704)
Q Consensus 63 ~~~~~e~f~~~i~~~-~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~-L~AVhVDHGLR~eS~~Ea 140 (704)
++.+.++|.+.+... ++.++++|+||+|||+||++|++++.++... ++.+ +.++|||||+|+++++|+
T Consensus 4 ~~~~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~----------~g~~~v~av~vd~g~r~~s~~~~ 73 (317)
T 1wy5_A 4 ESRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNY----------FSLKEVALAHFNHMLRESAERDE 73 (317)
T ss_dssp HHHHHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTT----------TTCSEEEEEEEECCSSTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHH----------cCCCEEEEEEEECCCCcccHHHH
Confidence 566778888888875 4788899999999999999999999876321 2347 999999999998889999
Q ss_pred HHHHHHHHhcCCeEEEEEccccCCC-CCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCC
Q 005288 141 NIVSHRVSDMGIRCEIVRCDWLDGR-PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVL 219 (704)
Q Consensus 141 e~V~kl~~~LGIp~~Iv~~~~~~~~-~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~ 219 (704)
++|+++|+++|||+++++.++.... ....++|..||.+||.+|.++|++.|+++|++|||+||++||++|++.||+|..
T Consensus 74 ~~v~~~a~~lgi~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~dD~~Et~l~~l~rg~g~~ 153 (317)
T 1wy5_A 74 EFCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETSLLFFTRGTGLD 153 (317)
T ss_dssp HHHHHHHHHHTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCcEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhHHHHHHHHHHHhCCCcc
Confidence 9999999999999999987653211 123478999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHHhchhcc---
Q 005288 220 GLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS--- 296 (704)
Q Consensus 220 GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~~L~pl~--- 296 (704)
||+||++.. + .++|||++++|+||++|++++|+||++||||.++.|.||+||+.+.|..
T Consensus 154 gl~~~~~~~----------------~--~iirPLl~~~k~eI~~~~~~~gl~~~~d~sn~~~~~~Rn~iR~~~lp~L~~~ 215 (317)
T 1wy5_A 154 GLIGFLPKE----------------E--VIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYEVSIPRNRIRHRVIPELKRI 215 (317)
T ss_dssp HHHCSCSEE----------------T--TEECTTTTCCHHHHHHHHHHTTCCCCCCGGGGTCCHHHHHHHHTHHHHHHHH
T ss_pred cccCCCCCC----------------C--eEECCCccCCHHHHHHHHHHcCCCeeECCCCCCCccHHHHHHHHHHHHHHHH
Confidence 999998521 1 4899999999999999999999999999999999999999999887753
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCceeEEeccccCCCchHHHHHHHHHHHHHHHhhCCcccccCc
Q 005288 297 SCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGS 376 (704)
Q Consensus 297 ~~~f~~~L~~~a~~~~~~~~~Ld~~~~~ll~~~v~~~~~g~~~ldl~~l~~~~i~~i~l~r~L~~vl~~is~~~~p~r~~ 376 (704)
+|.+..++.++++.++++.++++..+++.+.+.. . ...++...|...+ ..+.++++...+.. . ...
T Consensus 216 ~p~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~---~--~~~l~~~~l~~~~--~~~~~~~l~~~l~~---~----~~~ 281 (317)
T 1wy5_A 216 NENLEDTFLKMVKVLRAEREFLEEEAQKLYKEVK---K--GNCLDVKKLKEKP--LALQRRVIRKFIGE---K----DYE 281 (317)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE---E--TTEECHHHHTTSC--HHHHHHHHHHHHTC---C----CHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---c--CcEEcHHHHhcCC--HHHHHHHHHHHHHH---C----CHH
Confidence 6889999999999999999999998887776541 1 2346666664432 23344555554432 1 233
Q ss_pred hHHHHHHHHHcCCCCCeeeecceE
Q 005288 377 TSKLLLHYIRTFPCKTSLTAAGCY 400 (704)
Q Consensus 377 ~l~~Ll~~l~~~~~~~~~Tl~Gc~ 400 (704)
.+..+++.+.. ++.++++|++
T Consensus 282 ~~~~~~~~~~~---~~~~~l~~~~ 302 (317)
T 1wy5_A 282 KVELVRSLLEK---GGEVNLGKGK 302 (317)
T ss_dssp HHHHHHGGGTS---CCEEESSSEE
T ss_pred HHHHHHHHHhc---CCEEEcCCCE
Confidence 45555544444 4578898876
No 3
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=100.00 E-value=2.3e-43 Score=388.05 Aligned_cols=298 Identities=21% Similarity=0.260 Sum_probs=236.9
Q ss_pred CCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEE
Q 005288 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVR 158 (704)
Q Consensus 79 l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~ 158 (704)
+.++++|+||||||+||+||++++.++.... .+.++.++|||||+|++|++|+++|+++|+++|||+++++
T Consensus 10 l~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~---------~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~ 80 (433)
T 1ni5_A 10 LLTSRQILVAFSGGLDSTVLLHQLVQWRTEN---------PGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVER 80 (433)
T ss_dssp HTTCSEEEEECCSBHHHHHHHHHHHHHHTTS---------TTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCCCCEEEEEEcchHHHHHHHHHHHHHHHhc---------CCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEE
Confidence 4567999999999999999999998875321 1247999999999998899999999999999999999998
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCcccccccccccccccccc
Q 005288 159 CDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238 (704)
Q Consensus 159 ~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~ 238 (704)
++.. ....++|+.||.+||++|.++|+ ++++|+||||+|||+||+||++.||+|+.||+||++.+.
T Consensus 81 ~~~~---~~~~~~e~~aR~~Ry~~l~~~a~--~~~~i~tgH~~dD~aEt~L~~l~RG~g~~gL~gm~~~~~--------- 146 (433)
T 1ni5_A 81 VQLA---QEGLGIEAQARQARYQAFARTLL--PGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSE--------- 146 (433)
T ss_dssp CCCC---CSSSTTTTHHHHHHHHHHHHTCC--TTEEEECCCCHHHHHHHHHHHHTTTCCTTGGGCCCSEEE---------
T ss_pred ecCC---CCCCCHHHHHHHHHHHHHHHHHh--hCCeEEeeccchHHHHHHHHHHHcCCCcccccCCCCccc---------
Confidence 7653 12347899999999999999997 489999999999999999999999999999999997542
Q ss_pred cccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHHhchhcc---ccCHHHHHHHHHHHHHHHH
Q 005288 239 HDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS---SCSFKSELQAVISACRRTR 315 (704)
Q Consensus 239 ~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~~L~pl~---~~~f~~~L~~~a~~~~~~~ 315 (704)
.+++.++|||++++|+||++||+++|+||++||||.++.|.||+||+.+.|.. +|.+..++.++++.++++.
T Consensus 147 -----~~~~~iiRPLl~~~k~eI~~y~~~~gl~~~~D~sn~~~~~~Rn~iR~~~lp~L~~~~p~~~~~l~r~~~~~~~~~ 221 (433)
T 1ni5_A 147 -----FAGTRLIRPLLARTRGELVQWARQYDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAEQE 221 (433)
T ss_dssp -----ETTEEEECGGGSCCHHHHHHHHHHTTCCCBCCCCGGGTTSHHHHHHHTHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred -----cCCceEEccCccCCHHHHHHHHHHcCCCeEECCCCCCcccchHHHHHHHHHHHHHHCchHHHHHHHHHHHHHHHH
Confidence 13568999999999999999999999999999999999999999999988864 5889999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCCceeEEeccccCCCchHHHHHHHHHHHHHHHhhCCcccccCchHHHHHHHHHcCCC--CCe
Q 005288 316 SYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPC--KTS 393 (704)
Q Consensus 316 ~~Ld~~~~~ll~~~v~~~~~g~~~ldl~~l~~~~i~~i~l~r~L~~vl~~is~~~~p~r~~~l~~Ll~~l~~~~~--~~~ 393 (704)
++++..+++.+.+.+. ..+ .++...|.... ....++++...+...+. .+|....+..+++.+..... ...
T Consensus 222 ~~l~~~~~~~~~~~~~--~~~--~l~~~~l~~~~--~~~~~~~l~~~l~~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~ 293 (433)
T 1ni5_A 222 SLLDELLADDLAHCQS--PQG--TLQIVPMLAMS--DARRAAIIRRWLAGQNA--PMPSRDALVRIWQEVALAREDASPC 293 (433)
T ss_dssp HHHHHHHHHHHHHHBC--SSS--CEESGGGTTSC--HHHHHHHHHHHHHHTTC--CCCCHHHHHHHHHHTTTSCGGGCCE
T ss_pred HHHHHHHHHHHHHhhc--cCC--eEcHHHHhcCC--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHHhcCCCCCce
Confidence 9999988887776642 223 46766665432 23345666665554332 34555656666665543221 246
Q ss_pred eeecceEEecCCCCCCCeEEEEe
Q 005288 394 LTAAGCYLCPTPGSRGTKALVCS 416 (704)
Q Consensus 394 ~Tl~Gc~~~~~~~~~~~~vlv~~ 416 (704)
++++|+.+.. .++.+++.+
T Consensus 294 ~~l~~~~~~~----~~~~l~~~~ 312 (433)
T 1ni5_A 294 LRLGAFEIRR----YQSQLWWIK 312 (433)
T ss_dssp EEETTEEEEE----SSSEEEEEE
T ss_pred EEcCCEEEEE----ECCEEEEEE
Confidence 8889987632 334455543
No 4
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.96 E-value=2e-30 Score=291.89 Aligned_cols=208 Identities=18% Similarity=0.193 Sum_probs=152.3
Q ss_pred Ccceeeecc--------------chhhhhhhccccCCcCCccCCHHHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHH
Q 005288 33 RIPFTRSQY--------------LPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMAL 98 (704)
Q Consensus 33 ~~~~~~~q~--------------~~f~~~~c~~~~~w~~~~~~~~~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaL 98 (704)
.+++||+|| +||++.+|+|.++|+ +...+++..+.+++.++. ++|+||+|||+||++|
T Consensus 175 ~~~~~GvQFHPE~~~t~~G~~ll~nF~~~i~~~~~~w~--~~~~~~~~i~~i~~~v~~------~kvlvalSGGvDSsvl 246 (527)
T 3tqi_A 175 KRRFFGLQFHPEVTHTPQGHRILAHFVIHICQCIPNWT--TKHIIEDSIRDIQEKVGK------EQVIVGLSGGVDSAVT 246 (527)
T ss_dssp SSCEEEESBCSSSTTSTTHHHHHHHHHHTTSCCCCCCC--SHHHHHHHHHHHHHHHTT------SCEEEECTTTHHHHHH
T ss_pred CCCEEEEEeccccccccccchhhhhhhhhcccccchhh--HHHHHHHHHHHHHHhcCC------CeEEEEEecCcCHHHH
Confidence 357999999 899999999999999 555566777777766653 7899999999999999
Q ss_pred HHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHH-HHHhcCCeEEEEEccccCCCCC--CCChHHH-
Q 005288 99 CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH-RVSDMGIRCEIVRCDWLDGRPK--QGHLQEA- 174 (704)
Q Consensus 99 L~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~k-l~~~LGIp~~Iv~~~~~~~~~~--~gniEe~- 174 (704)
|+++++.. +.+++|+|||||++. .+|.+.+.+ +|+++||++++++++..+.... ..+++..
T Consensus 247 a~ll~~~~-------------G~~v~av~vd~g~~~--~~e~~~~~~~~a~~lgi~~~vv~~~~~~~~~l~g~~~~~~~r 311 (527)
T 3tqi_A 247 ATLVHKAI-------------GDQLVCVLVDTGLLR--LNEVDEVLNVFQKHLGAKVICVDAKDRFMKALKGISDPEEKR 311 (527)
T ss_dssp HHHHHHHH-------------GGGEEEEEECCSCSC--TTHHHHHHHHHTTSSCCEEEEECCHHHHHSSSSSCCCHHHHH
T ss_pred HHHHHHHh-------------CCeEEEEEeccCCCC--hhHHHHHHHHHHHHcCCcEEEEeChHHHHHhhcCCCChhhhh
Confidence 99998752 237999999999973 345566655 9999999999998865432211 2255554
Q ss_pred --HHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCC---CcccccccccccccccccccccccCCCeEE
Q 005288 175 --ARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVL---GLAGMAFSSQIFSSYAYSCHDDLKNHSILL 249 (704)
Q Consensus 175 --AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~---GLaGm~~~~~vf~~~~~~~~~~~~~~~i~I 249 (704)
+++.+|++|.++|++.|+++|++|||+||++||++||..++..++ ++.||+. ...+.+
T Consensus 312 ~~~~~~~~~~~~~~A~~~g~~~la~Gh~~dD~~Et~~~~~g~~~~ik~~~~l~gl~~-----------------~~~~~i 374 (527)
T 3tqi_A 312 KIAGEQFIRVFEEQAKKLNVKWLGQGTIYPDVIESAKTKTGKGHIIKTHHNVGGLPL-----------------NMELKL 374 (527)
T ss_dssp HHHHHHHHHHHHHTTTTTTCCEEECCCCHHHHHCC-------------------------------------------CE
T ss_pred hhhHHHHHHHHHHHHHHcCCCEEEccccCCccccccccCCChhheeeeecccccCcc-----------------cccCcc
Confidence 345688999999999999999999999999999998843333233 2444442 234679
Q ss_pred EeeCCCCCHHHHHHHHHhCCCce---eeCCCCCC
Q 005288 250 VRPLLDFSKDDMYKICQGGNRDW---VEDPTNRS 280 (704)
Q Consensus 250 IRPLL~lsK~EIr~y~~~~gLp~---veDpSN~d 280 (704)
+|||++++|+||++|++++|+|| +.+|++..
T Consensus 375 irPL~~l~K~EIr~~a~~lGlp~~~v~~~P~p~~ 408 (527)
T 3tqi_A 375 IEPLRELFKDEVRKLGLELGLPADLIYRHPFPGP 408 (527)
T ss_dssp ECTTTTCCHHHHHHHHHHHTCCHHHHTCCCCCTT
T ss_pred ccchhcCCHHHHHHHHHHcCCChhhhccCCCCCC
Confidence 99999999999999999999999 78886543
No 5
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.95 E-value=2.2e-27 Score=265.60 Aligned_cols=205 Identities=18% Similarity=0.100 Sum_probs=148.1
Q ss_pred cceeeecc--------------chhhhhhhccccCCcCCccCCHHHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHH
Q 005288 34 IPFTRSQY--------------LPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALC 99 (704)
Q Consensus 34 ~~~~~~q~--------------~~f~~~~c~~~~~w~~~~~~~~~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL 99 (704)
+++||+|| +||+ .+|+|.++|+ +...+++..+.+++.++. ++|+||+|||+||++++
T Consensus 156 ~~~~gvQFHPE~~~~~~g~~ll~~F~-~~~~~~~~~~--~~~~~~~~i~~ir~~~~~------~kvvvalSGGvDSsvla 226 (503)
T 2ywb_A 156 GRAYGVQFHPEVAHTPKGMQILENFL-ELAGVKRDWT--PEHVLEELLREVRERAGK------DRVLLAVSGGVDSSTLA 226 (503)
T ss_dssp SSEEEESBCTTSTTSTTHHHHHHHHH-HHTTCCCCCC--HHHHHHHHHHHHHHHHTT------SEEEEEECSSHHHHHHH
T ss_pred CCEEEEecCCCcccccccHHHHHHHH-HHhhhhcccc--chhhhHHHHHhhhhhccC------ccEEEEecCCcchHHHH
Confidence 57999999 7999 9999999998 444455555566655533 79999999999999999
Q ss_pred HHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccCCC--CCCCChHHH---
Q 005288 100 VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGR--PKQGHLQEA--- 174 (704)
Q Consensus 100 ~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~~--~~~gniEe~--- 174 (704)
+++++. | .+++++|||||++. .+|.+.++++|+++|+++++++.+..+.. ....+++..
T Consensus 227 ~ll~~~---g-----------~~v~av~vd~g~~~--~~e~~~v~~~~~~lgi~~~vv~~~~~f~~~l~g~~~pe~~r~~ 290 (503)
T 2ywb_A 227 LLLAKA---G-----------VDHLAVFVDHGLLR--LGEREEVEGALRALGVNLLVVDAKERFLKALKGVEDPEEKRKI 290 (503)
T ss_dssp HHHHHH---T-----------CEEEEEEEECSCSC--TTHHHHHHHHHHHTTCCEEEEECHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHc---C-----------CeEEEEEEeCCCCC--hHHHHHHHHHHHHhCCCEEEEECcHHHHHhhcCCCChHHHhhh
Confidence 999875 3 37999999999853 45788899999999999999998753211 111244433
Q ss_pred HHHHHHHHHHHHHHHc-CCCEeecccccchhHHHHHHHHhccCCCCCcccccccccccccccccccccccCCCeEEEeeC
Q 005288 175 ARDMRYRLFQKVCIQH-QIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPL 253 (704)
Q Consensus 175 AR~~RY~~L~~~A~e~-G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPL 253 (704)
++..||+.|.++|+++ |+++|++|||+||++||.++ +++ ..|+.++++++ .+...++.++|||
T Consensus 291 ~~~~~~~~l~~~A~~~~g~~~la~G~~~~D~~Et~~~---g~~-----~~iks~~~l~~--------l~~~~~~~ii~PL 354 (503)
T 2ywb_A 291 IGREFVAAFSQVARERGPFRFLAQGTLYPDVIESAGG---HGA-----AKIKSHHNVGG--------LPEDLEFELLEPF 354 (503)
T ss_dssp HHHHHHHHHHHHHHHHCCCSEEECCCCHHHHHC-------------------------C--------CCSSCCCEEECTT
T ss_pred hhHHHHHHHHHHHHhcCCCCEEEECCcCccchhhccC---Ccc-----ccccccccccc--------ccccccCceEehh
Confidence 3345889999999999 99999999999999999654 111 11222222111 1123457899999
Q ss_pred CCCCHHHHHHHHHhCCCcee---eCCCCC
Q 005288 254 LDFSKDDMYKICQGGNRDWV---EDPTNR 279 (704)
Q Consensus 254 L~lsK~EIr~y~~~~gLp~v---eDpSN~ 279 (704)
++++|+||++|++++|+||. ..|+..
T Consensus 355 ~~l~K~EVr~~a~~~glp~~i~~~~P~~~ 383 (503)
T 2ywb_A 355 RLLFKDEVRELALLLGLPDTLRLRHPFPG 383 (503)
T ss_dssp TTCCHHHHHHHHHHTTCCHHHHSCCCCCT
T ss_pred hcCCHHHHHHHHHHcCCChhheecCCCCC
Confidence 99999999999999999973 355543
No 6
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=3.6e-28 Score=241.64 Aligned_cols=166 Identities=14% Similarity=0.150 Sum_probs=126.5
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~ 162 (704)
++|+||+|||+||+++++++++. + .++.++|||||+++ |.+.++++|+.+|+++++++++..
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~~---g-----------~~v~~~~v~~~~~~----~~~~~~~~a~~lgi~~~~~~~~~~ 68 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKKL---G-----------YNPHLITINFGVIP----SYKLAEETAKILGFKHKVITLDRK 68 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHT---T-----------EEEEEEEEECSSSC----TTHHHHHHHHHHTCEEEEEECCTH
T ss_pred CeEEEEEECcHHHHHHHHHHHHc---C-----------CCeEEEEEeCCCch----HHHHHHHHHHHhCCCEEEEECCHH
Confidence 68999999999999999998652 2 37899999999976 668899999999999999987642
Q ss_pred CCC------CCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCcccccccccccccccc
Q 005288 163 DGR------PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY 236 (704)
Q Consensus 163 ~~~------~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~ 236 (704)
+.. ...+.++..|...|+.+|.++|+ |+++|++|||+||++||+.+ .|+.+++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~c~~~~~~~l~~~A~--g~~~i~tGh~~dD~~et~~~--------~gl~~~~~---------- 128 (203)
T 3k32_A 69 IVEKAADMIIEHKYPGPAIQYVHKTVLEILAD--EYSILADGTRRDDRVPKLSY--------SEIQSLEM---------- 128 (203)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTT--TCSEEECCCCTTCCSSCCCH--------HHHHHHHH----------
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhc--CCCEEEECCCcccchhhcch--------hhccCccc----------
Confidence 110 00122344566678888888887 89999999999999998743 23444432
Q ss_pred cccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhH-HHHHHhchh
Q 005288 237 SCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVR-NRIRMSLGD 294 (704)
Q Consensus 237 ~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~R-NrIR~~L~p 294 (704)
..++.++|||+.++|+||++|++++ ++|++||||.++.+.+ ++||+.|.+
T Consensus 129 -------~~~~~iirPLl~~~k~eI~~~a~~~-l~~~~~~sn~~~~~dy~~~~r~~l~~ 179 (203)
T 3k32_A 129 -------RKNIQYITPLMGFGYKTLRHLASEF-FILEEIKSGTKLSSDYEAEIRHILKE 179 (203)
T ss_dssp -------HHTCEEECGGGGCCHHHHHHHHHHH-EEEEEECC------CTHHHHHHHHHH
T ss_pred -------ccCCeEEeccCCCCHHHHHHHHHHh-CCcccCCCCCCCCCcHHHHHHHHHhh
Confidence 1246799999999999999999999 9999999999887665 788877765
No 7
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.94 E-value=3.3e-27 Score=265.53 Aligned_cols=207 Identities=19% Similarity=0.190 Sum_probs=151.2
Q ss_pred hhhccCcCCC--------cceeeecc--------------chhhhhhhccccCCcCCccCCHHHHHHHHHHHHHHcCCCC
Q 005288 24 RLSLSSVKCR--------IPFTRSQY--------------LPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKP 81 (704)
Q Consensus 24 ~~~~~~~~~~--------~~~~~~q~--------------~~f~~~~c~~~~~w~~~~~~~~~~~~e~f~~~i~~~~l~~ 81 (704)
+++++++.|+ +++||+|| +||+..+|+|+.+|+ +...+++..+.+++.++.
T Consensus 155 ~v~A~s~~~~i~ai~~~~~~i~gvQFHPE~~~~~~g~~ll~nF~~~i~~~~~~~~--~~~~~~~~~~~ir~~v~~----- 227 (525)
T 1gpm_A 155 ITVASTESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWT--PAKIIDDAVARIREQVGD----- 227 (525)
T ss_dssp EEEEECSSCSCSEEEETTTTEEEESBCTTSTTSTTHHHHHHHHHHTTSCCCCCCC--HHHHHHHHHHHHHHHHTT-----
T ss_pred EEEEECCCCCEEEEEECCCCEEEEecCCCCCcchhHHHHHHHHHHhhhhccccch--HHHHHHhhhhhhhhhhcc-----
Confidence 4556666653 58999999 899999999999998 444555556666665543
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHH-HHHhcCCeEEEEEcc
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH-RVSDMGIRCEIVRCD 160 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~k-l~~~LGIp~~Iv~~~ 160 (704)
++|+||+|||+||+++++++++.. +.+++|+|||||++.. .|.+.+.+ +|+.+|+++++++++
T Consensus 228 -~~vvvalSGGvDSsv~a~ll~~a~-------------G~~v~av~v~~g~~~~--~e~~~~~~~la~~lgi~~~~v~~~ 291 (525)
T 1gpm_A 228 -DKVILGLSGGVDSSVTAMLLHRAI-------------GKNLTCVFVDNGLLRL--NEAEQVLDMFGDHFGLNIVHVPAE 291 (525)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHHH-------------GGGEEEEEEECSCSCT--THHHHHHHHHTTTTCCCEEEEECH
T ss_pred -cceEEEecCCCCHHHHHHHHHHHh-------------CCCEEEEEEeCCCCCc--hHHHHHHHHHHHHhCCcEEEEecc
Confidence 799999999999999999998642 2379999999999643 35666755 899999999999987
Q ss_pred ccCCC--CCCCChHHH---HHHHHHHHHHHHHHHc-CCCEeecccccchhHHHHHHH-HhccCCC----CCccccccccc
Q 005288 161 WLDGR--PKQGHLQEA---ARDMRYRLFQKVCIQH-QIGVLLIAHHADDQAELFILR-LSRNSGV----LGLAGMAFSSQ 229 (704)
Q Consensus 161 ~~~~~--~~~gniEe~---AR~~RY~~L~~~A~e~-G~~~LatGHhaDDqaET~Lmr-L~RGsGl----~GLaGm~~~~~ 229 (704)
..+.. ....+++.. ++..||++|.++|+++ |+++|++|||+||++|++ + ..+|++. .++.||+.
T Consensus 292 ~~f~~~l~~~~~pe~~~~~~~~~~~~~l~~~A~~~~g~~~l~~Gt~~~D~~E~~--~~~~~~s~~iks~~~l~gl~~--- 366 (525)
T 1gpm_A 292 DRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYPDVIESA--ASATGKAHVIKSHHNVGGLPK--- 366 (525)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCCCHHHHHHTT--C-----------------------
T ss_pred HHHHHhhcCCCChHHhhhhhhHHHHHHHHHHHHhcCCCCEEEeCCCCcchhhhc--Ccccccccccccccccccccc---
Confidence 53211 112355543 4567889999999999 999999999999999984 2 2234331 13444442
Q ss_pred ccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005288 230 IFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (704)
Q Consensus 230 vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (704)
.....++|||++++|+||+++++++|+|+
T Consensus 367 --------------~~~~~~i~PL~~l~K~EVr~la~~lglp~ 395 (525)
T 1gpm_A 367 --------------EMKMGLVEPLKELFKDEVRKIGLELGLPY 395 (525)
T ss_dssp ----------------CCEEECTTTTCCHHHHHHHHHHTTCCH
T ss_pred --------------ccCCcEEehhhcCCHHHHHHHHHHcCCCH
Confidence 23457999999999999999999999995
No 8
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.94 E-value=1.4e-26 Score=262.31 Aligned_cols=218 Identities=20% Similarity=0.160 Sum_probs=153.3
Q ss_pred hhhccCcCCC--------cceeeecc--------------chhhhhhhccccCCcCCccCCHHHHHHHHHHHHHHcCCCC
Q 005288 24 RLSLSSVKCR--------IPFTRSQY--------------LPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKP 81 (704)
Q Consensus 24 ~~~~~~~~~~--------~~~~~~q~--------------~~f~~~~c~~~~~w~~~~~~~~~~~~e~f~~~i~~~~l~~ 81 (704)
.++++++.|+ +++||+|| +||++.+|+|..+|+ ++.+.++..+.+++. .+
T Consensus 183 ~vlA~s~~~~i~ai~~~~~~i~GvQFHPE~~~~~~G~~ll~nFl~~i~g~~~~~~------~~~~~~~~i~~ir~~--g~ 254 (556)
T 3uow_A 183 YLVSSSENCLICSIYNKEYNIYGVQYHPEVYESLDGELMFYNFAYNICKCKKQFD------PIRYHELELKNIEKY--KH 254 (556)
T ss_dssp EEEEEETTEEEEEEEETTTTEEEESSCTTSTTSTTHHHHHHHHHTTTTCCCC-CC------HHHHHHHHHHHHGGG--TT
T ss_pred EEEEEeCCCCEEEEEECCCCEEEEEcCCCCCccccchHHHHHHHHHhhccccccc------cccccccceeeeeec--CC
Confidence 3455555553 67999999 899999999999888 455566666666665 45
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHH-HHHHHhc-CCeEEEEEc
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV-SHRVSDM-GIRCEIVRC 159 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V-~kl~~~L-GIp~~Iv~~ 159 (704)
+++|+||+|||+||+++|+|+++.. +.+++|+|||||++.. .|.+.+ +.+|+.+ ||+++++++
T Consensus 255 ~~~vvvalSGGvDSsv~a~ll~~~~-------------G~~v~~v~vd~g~~~~--~e~~~~~~~~~~~l~gi~~~~vd~ 319 (556)
T 3uow_A 255 DHYVIAAMSGGIDSTVAAAYTHKIF-------------KERFFGIFIDNGLLRK--NEAENVYTFLKSTFPDMNITKIDA 319 (556)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHHH-------------GGGEEEEEEECSCSCT--THHHHHHHHHHHHCTTSEEEEEEC
T ss_pred CceEEEEcccCCCHHHHHHHHHHHh-------------CCeEEEEEEecCCCCh--HHHHHHHHHHHHhcCCCCeEEecc
Confidence 7899999999999999999997642 2479999999999743 345555 5688999 999999998
Q ss_pred cccCCCC--CCCChHHHHHH---HHHHHHHHHHHHcCC----CEeecccccchhHHHHHHHHhccCCCCCcccccccccc
Q 005288 160 DWLDGRP--KQGHLQEAARD---MRYRLFQKVCIQHQI----GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQI 230 (704)
Q Consensus 160 ~~~~~~~--~~gniEe~AR~---~RY~~L~~~A~e~G~----~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~v 230 (704)
+..+... ...+++..++. .+++.|.++|++.|. ++|++||++||++|++.++ | ....++.++++
T Consensus 320 ~~~f~~~l~g~~~pe~kr~iig~~f~~vf~~~A~~~~~~~~~~~la~Gt~y~D~ies~~~~---g----~~~~iks~~n~ 392 (556)
T 3uow_A 320 SENFLSNLQGVTDPEQKRKIIGKLFIEEFEKAVNNIDIDINKTFLLQGTLYPDIIESKCSK---N----LSDTIKTHHNV 392 (556)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHTTCCCGGGEEEECCCCHHHHHHHSCC--------------------
T ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHcCCcccccccccCccChHHHhhcccc---c----ccceecccccc
Confidence 7543211 12244443322 378889999999986 8999999999999986321 1 13345555544
Q ss_pred cccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc---eeeCCCCC
Q 005288 231 FSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD---WVEDPTNR 279 (704)
Q Consensus 231 f~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp---~veDpSN~ 279 (704)
++ .+....+.+++||++++|+||+++++++|+| .+..|+..
T Consensus 393 ~g--------l~~~~~~~li~PL~~l~K~EVr~la~~lGlp~~~~~r~P~p~ 436 (556)
T 3uow_A 393 GG--------LPKNLKFKLFEPFKYLFKDDVKTLSRELNLPEEITNRHPFPG 436 (556)
T ss_dssp --------------CCCEEECTTTTCCHHHHHHHHHTTTCCHHHHHCCCCCT
T ss_pred cc--------cccccccceEeecccCcHHHHHHHHHHcCCCHHHhCCCCCCC
Confidence 32 2334567899999999999999999999999 55556543
No 9
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.93 E-value=7.3e-26 Score=262.02 Aligned_cols=212 Identities=16% Similarity=0.169 Sum_probs=159.5
Q ss_pred Ccceeeecc--------------chhhhhhhccccCCcCCccCCHHHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHH
Q 005288 33 RIPFTRSQY--------------LPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMAL 98 (704)
Q Consensus 33 ~~~~~~~q~--------------~~f~~~~c~~~~~w~~~~~~~~~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaL 98 (704)
.+++||+|| +||++.+|+|+++|+ +....++..+.+++.++ +++|+||+|||+||+++
T Consensus 185 ~~~i~GvQFHPE~~~t~~g~~ll~nFl~~i~~~~~~~~--~~~~~~~~i~~Ir~~v~------~~~vvv~lSGGvDSsVl 256 (697)
T 2vxo_A 185 SKKLYGAQFHPEVGLTENGKVILKNFLYDIAGCSGTFT--VQNRELECIREIKERVG------TSKVLVLLSGGVDSTVC 256 (697)
T ss_dssp TTTEEEESSCTTSSSSTTHHHHHHHHHTTTTCCCSCCC--HHHHHHHHHHHHHHHHT------TCEEEEECCSSHHHHHH
T ss_pred CCCEEEEEecccCCCCccchhhhhhhhhccccccccch--hhHHHHHHHHHHHHHhc------ccceEEEccCchHHHHH
Confidence 467999999 799999999999998 44445555555555553 37999999999999999
Q ss_pred HHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccCCCC------------
Q 005288 99 CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRP------------ 166 (704)
Q Consensus 99 L~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~~~------------ 166 (704)
++|+++.. | ..+++|+|||||++.. .|.+.++++|+++|+++++++++..+...
T Consensus 257 a~Ll~~al--G----------~~~V~aV~vd~g~~~~--~e~e~a~~~a~~lGI~~~vvdi~~~f~~~~~~l~~~~~~~~ 322 (697)
T 2vxo_A 257 TALLNRAL--N----------QEQVIAVHIDNGFMRK--RESQSVEEALKKLGIQVKVINAAHSFYNGTTTLPISDEDRT 322 (697)
T ss_dssp HHHHHHHS--C----------GGGEEEEEEECSCCCS--STTHHHHHHHHHTTCCEEEEECHHHHHTCCCBCC-------
T ss_pred HHHHHHhc--C----------CceEEEEEeccccCCc--chHHHHHHHHHHhCCcEEEecchHHHHhhhhhhcccccccc
Confidence 99997641 1 0479999999999743 45678899999999999999987532110
Q ss_pred ----CCCC-----hHHHHHHH----HHHHHHHHHHHcCCC----EeecccccchhHHHHHHHHhccCCCC----Cccccc
Q 005288 167 ----KQGH-----LQEAARDM----RYRLFQKVCIQHQIG----VLLIAHHADDQAELFILRLSRNSGVL----GLAGMA 225 (704)
Q Consensus 167 ----~~gn-----iEe~AR~~----RY~~L~~~A~e~G~~----~LatGHhaDDqaET~LmrL~RGsGl~----GLaGm~ 225 (704)
...+ .++.+|++ +++++.++|++.|++ +|++||+++|++||+.+.+.+|++.. ++.|++
T Consensus 323 Y~~g~~~~l~~v~~~~~kR~iig~~~~~v~~~~A~~~g~~~~~~~LatG~~~~D~iEs~~~~l~~g~~~iks~~nv~g~~ 402 (697)
T 2vxo_A 323 PRKRISKTLNMTTSPEEKRKIIGDTFVKIANEVIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELI 402 (697)
T ss_dssp ---CBCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTSEEEECCCSSCCSBCCHHHHHHSCCCGGGSCCSSCHHH
T ss_pred hhcccCcCcccccCHHHHHhHHHHHHHHHHHHHHHHcCCCcccEEEEEeccChhhhhhhhhhhhcCccccccccccchhh
Confidence 0011 24556664 667778889999988 99999999999999998888887642 344554
Q ss_pred ccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce--eeCCCCCCC
Q 005288 226 FSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW--VEDPTNRSP 281 (704)
Q Consensus 226 ~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~--veDpSN~d~ 281 (704)
... .....++|||++++|+||+++++++|+|+ +..+...++
T Consensus 403 ~~~---------------~~~~~~i~PL~~L~K~EVr~la~~lGlP~~i~~r~Ps~gp 445 (697)
T 2vxo_A 403 RKL---------------REEGKVIEPLKDFHKDEVRILGRELGLPEELVSRHPFPGP 445 (697)
T ss_dssp HHH---------------HHTTCEECGGGGSCHHHHHHHHHHTTCCHHHHTCCCCCTT
T ss_pred HHh---------------ccCCEEEEecccCCHHHHHHHHHHcCCCcceeeCCCCCCC
Confidence 210 11245999999999999999999999999 344444343
No 10
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=99.89 E-value=5.7e-24 Score=230.82 Aligned_cols=173 Identities=13% Similarity=0.097 Sum_probs=130.5
Q ss_pred CCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCC------CcHHHHHHHHHHHHhcCCe
Q 005288 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE------ESKEEANIVSHRVSDMGIR 153 (704)
Q Consensus 80 ~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~------eS~~Eae~V~kl~~~LGIp 153 (704)
.++++|+||+|||+||+++|+++++. | .+++++|+||+.++ .+.++.+.++++|+++|||
T Consensus 15 ~~~~kVvVa~SGGvDSsv~a~lL~~~---G-----------~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp 80 (380)
T 2der_A 15 ETAKKVIVGMSGGVDSSVSAWLLQQQ---G-----------YQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIE 80 (380)
T ss_dssp --CCEEEEECCSCSTTHHHHHHHHTT---C-----------CEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCEEEEEEEChHHHHHHHHHHHHc---C-----------CeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCc
Confidence 45689999999999999999999753 2 37999999999864 2567899999999999999
Q ss_pred EEEEEccccC-----------C-CCCCCChHHHHHH-HHHHHHHHHHHH-cCCCEeecccccchhHHHHHHHHhccCCCC
Q 005288 154 CEIVRCDWLD-----------G-RPKQGHLQEAARD-MRYRLFQKVCIQ-HQIGVLLIAHHADDQAELFILRLSRNSGVL 219 (704)
Q Consensus 154 ~~Iv~~~~~~-----------~-~~~~gniEe~AR~-~RY~~L~~~A~e-~G~~~LatGHhaDDqaET~LmrL~RGsGl~ 219 (704)
+++++++..+ + .....|++..|++ +||..|.++|++ +|+++|+||||++|++|+..+++.+|.+..
T Consensus 81 ~~vvd~~~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~d~~~~~~~~l~rg~~~~ 160 (380)
T 2der_A 81 LHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSN 160 (380)
T ss_dssp EEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEEEETTEEEEECCSSTT
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccccccccchHHHhcccccc
Confidence 9999986321 1 1123478888865 699999999999 999999999999999999988999988654
Q ss_pred C-----cccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCch
Q 005288 220 G-----LAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLF 283 (704)
Q Consensus 220 G-----LaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y 283 (704)
+ |.+|+. .....+++||.+++|+||+++++++|+++++||+|.+..|
T Consensus 161 kdqsy~L~~l~~-----------------~~l~~~i~PL~~~~K~eVr~~A~~~Gl~~~~kp~s~~~cf 212 (380)
T 2der_A 161 KDQSYFLYTLSH-----------------EQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICF 212 (380)
T ss_dssp TCCGGGGSSCCH-----------------HHHHHEECCGGGSCHHHHHHHHHHTTCC------------
T ss_pred cccceeecCCCh-----------------hhcceeEccCCCCCHHHHHHHHHHcCCCCccCCCCCCccc
Confidence 3 333331 1124689999999999999999999999999999999776
No 11
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=99.89 E-value=6.6e-24 Score=229.91 Aligned_cols=173 Identities=15% Similarity=0.164 Sum_probs=141.8
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCC------CcHHHHHHHHHHHHhcCCeE
Q 005288 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE------ESKEEANIVSHRVSDMGIRC 154 (704)
Q Consensus 81 ~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~------eS~~Eae~V~kl~~~LGIp~ 154 (704)
++++|+||+|||+||+++|+++++. | .+++++|+||+.++ .+.++.+.++++|+++|||+
T Consensus 8 ~~~kVlVa~SGGvDSsv~a~lL~~~---G-----------~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~ 73 (376)
T 2hma_A 8 SKTRVVVGMSGGVDSSVTALLLKEQ---G-----------YDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPY 73 (376)
T ss_dssp GGSEEEEECCSSHHHHHHHHHHHHT---T-----------CEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCE
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHHc---C-----------CcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcE
Confidence 4579999999999999999999753 2 37999999999874 25688999999999999999
Q ss_pred EEEEccccCC------------CCCCCChHHHH-HHHHHHHHHHHHHHcCCCEeecccccchhH-HHHHHHHhccCCCCC
Q 005288 155 EIVRCDWLDG------------RPKQGHLQEAA-RDMRYRLFQKVCIQHQIGVLLIAHHADDQA-ELFILRLSRNSGVLG 220 (704)
Q Consensus 155 ~Iv~~~~~~~------------~~~~gniEe~A-R~~RY~~L~~~A~e~G~~~LatGHhaDDqa-ET~LmrL~RGsGl~G 220 (704)
++++++..+. .....|++..| |.+||..|.++|+++|+++|+||||++|++ |+.++++.||.+..+
T Consensus 74 ~vv~~~~~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a~d~~~~~~~~~l~rg~d~~k 153 (376)
T 2hma_A 74 YSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGK 153 (376)
T ss_dssp EEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEECSSSCEEEEECSSTTT
T ss_pred EEEeChHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcchhhhhCCCchhhhhhcccccc
Confidence 9999864320 11234788776 667899999999999999999999999999 888888888876543
Q ss_pred -----cccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchh
Q 005288 221 -----LAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFV 284 (704)
Q Consensus 221 -----LaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~ 284 (704)
|.+|+.. ....+++||.+++|+||++|++++|++++++|++.+..|.
T Consensus 154 dqsyfL~~l~~~-----------------~l~~~i~PL~~~~K~eVr~~A~~~gl~~~~k~~s~~~cf~ 205 (376)
T 2hma_A 154 DQTYFLSQLSQE-----------------QLQKTMFPLGHLEKPEVRRLAEEAGLSTAKKKDSTGICFI 205 (376)
T ss_dssp CCGGGGTTCCHH-----------------HHTTEECTTTTCCHHHHHHHHHHTTCTTTTCCCCCSCTTT
T ss_pred ccchhccCCChh-----------------hcCcEEecCcCCCHHHHHHHHHHcCCCcccCCCCCCcccc
Confidence 4444321 1135899999999999999999999999999999887663
No 12
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=99.89 E-value=2.8e-23 Score=219.26 Aligned_cols=172 Identities=18% Similarity=0.143 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHH
Q 005288 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142 (704)
Q Consensus 63 ~~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~ 142 (704)
|+++.+...+.+++. + .+++|+||+|||+||+++++++++.. +.++.++|||||++.. +|.+.
T Consensus 3 ~~~~~~~~~~~ir~~-v-~~~kvlvalSGGvDSsvla~ll~~~~-------------g~~v~av~vd~g~~~~--~e~~~ 65 (308)
T 2dpl_A 3 WGRFVEEKVREIRET-V-GDSKAIIALSGGVDSSTAAVLAHKAI-------------GDRLHAVFVNTGFLRK--GEPEF 65 (308)
T ss_dssp HHHHHHHHHHHHHHH-H-TTSCEEEECCSSHHHHHHHHHHHHHH-------------GGGEEEEEEECSCCCT--THHHH
T ss_pred HHHHHHHHHHHHHHH-h-CCCCEEEEEeChHHHHHHHHHHHHhh-------------CCCEEEEEEcCCCCCh--HHHHH
Confidence 444444444444332 1 13799999999999999999998652 2378999999999642 46667
Q ss_pred HHH-HHHhcCCeEEEEEccccCCC--CCCCChHH---HHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccC
Q 005288 143 VSH-RVSDMGIRCEIVRCDWLDGR--PKQGHLQE---AARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNS 216 (704)
Q Consensus 143 V~k-l~~~LGIp~~Iv~~~~~~~~--~~~gniEe---~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGs 216 (704)
+.+ +++++|+++++++.+..+.. ....+++. .++..||.+|.++|+++|+++|++|||+||++||..
T Consensus 66 ~~~~~a~~lgi~~~vv~~~~~f~~~l~~~~~pe~~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~dD~~Et~~------- 138 (308)
T 2dpl_A 66 VVKTFRDEFGMNLHYVDAQDRFFSALKGVTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAPDWIESQG------- 138 (308)
T ss_dssp HHHHHTTTTCCEEEEEECHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCCC--------------
T ss_pred HHHHHHHHcCCcEEEEECCHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHcCcCEEEECCCCccchhhcc-------
Confidence 787 55689999999998753211 11124543 345679999999999999999999999999999841
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005288 217 GVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (704)
Q Consensus 217 Gl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (704)
|+. ++. +.++ .+...++.++|||++++|+||++|++++|+||
T Consensus 139 ~ik---s~~---~~~~--------l~~~~~~~virPL~~l~K~EI~~~a~~~glp~ 180 (308)
T 2dpl_A 139 KIK---SHH---NVGG--------LPEKLNLKLIEPLRDLYKDEVRELAKFLGLPE 180 (308)
T ss_dssp ----------------------------CCCEEECTTTTCCHHHHHHHHHHTTCCH
T ss_pred chh---hhh---cccc--------CCccCCCeEEEEcccCCHHHHHHHHHHhCCCc
Confidence 222 221 1100 11234578999999999999999999999997
No 13
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=99.88 E-value=1.9e-23 Score=206.50 Aligned_cols=157 Identities=13% Similarity=0.151 Sum_probs=117.2
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccc
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~ 161 (704)
+++|+||+|||+||+++++++.+. + .++.++|+|||++.. +|.+.++++|+++|++++++++++
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~---~-----------~~v~~~~~~~~~~~~--~e~~~a~~~a~~lgi~~~~~~~~~ 66 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE---F-----------EEVETVTFHYNQRHS--QEVEVAKSIAEKLGVKNHLLDMSL 66 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH---C-----------SEEEEEEEESSCTTC--HHHHHHHHHHHTTCCCEEEEECGG
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc---C-----------CceEEEEEeCCCCCH--HHHHHHHHHHHHhCCCeEEEeChH
Confidence 378999999999999999998753 1 268999999999753 678899999999999999999875
Q ss_pred cCC-------CC---------CCCChHHHHHHHHH-HHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCcccc
Q 005288 162 LDG-------RP---------KQGHLQEAARDMRY-RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM 224 (704)
Q Consensus 162 ~~~-------~~---------~~gniEe~AR~~RY-~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm 224 (704)
... .. ...+.+..+|.++| .++.++|+++|+++|++|||+||++|. +..|++++.++.++
T Consensus 67 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~dd~~~~---~~~~~~~~~~l~~~ 143 (219)
T 3bl5_A 67 LNQLAPNALTRNDIEIEVKDGELPSTFVPGRNLVFLSFASILAYQIGARHIITGVCETDFSGY---PDCRDEFVKSCNVT 143 (219)
T ss_dssp GGGGSTGGGC--------------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC----CC---GGGSHHHHHHHHHH
T ss_pred HhhhcccccccccccccccccCCCCceeechHHHHHHHHHHHHHHcCCCEEEEeccccccCCC---CCCCHHHHHHHHHH
Confidence 210 00 00122235888899 788999999999999999999999872 44455444455554
Q ss_pred cccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc
Q 005288 225 AFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD 271 (704)
Q Consensus 225 ~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp 271 (704)
.... .+.++.++|||++++|+||++|++++|+|
T Consensus 144 ~~~~--------------~~~~~~ii~PL~~~~K~ei~~~a~~~glp 176 (219)
T 3bl5_A 144 VNLA--------------MEKPFVIHTPLMWLNKAETWKLADELGAL 176 (219)
T ss_dssp HHHH--------------HTSCCEEECTTTTCCHHHHHHHHHHTTCH
T ss_pred HHhc--------------cCCCeEEEeccccCCHHHHHHHHHHcCCC
Confidence 4211 12356899999999999999999999994
No 14
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=99.84 E-value=1.9e-21 Score=195.54 Aligned_cols=165 Identities=16% Similarity=0.170 Sum_probs=120.3
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCe-EEEEEccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR-CEIVRCDW 161 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp-~~Iv~~~~ 161 (704)
++++|++|||+||+++++++.+. + .++.++|+|||+|. ..|.+.++++|+++|++ ++++++++
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~---~-----------~~v~av~~~~g~~~--~~e~~~a~~~a~~lgi~~~~vi~~~~ 66 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQD---Y-----------DDVHCITFDYGQRH--RAEIEVAQELSQKLGAAAHKVLDVGL 66 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---C-----------SEEEEEEEESSSSC--HHHHHHHHHHHHHHTCSEEEEEECTH
T ss_pred CCEEEEecCcHHHHHHHHHHHHc---C-----------CCEEEEEEECCCCC--HHHHHHHHHHHHHhCCCceEEEeChh
Confidence 68999999999999999998753 1 27899999999974 47889999999999999 99998872
Q ss_pred c--CC----------CCC----CC---ChHHHHHHHHHHHH-HHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCc
Q 005288 162 L--DG----------RPK----QG---HLQEAARDMRYRLF-QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGL 221 (704)
Q Consensus 162 ~--~~----------~~~----~g---niEe~AR~~RY~~L-~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GL 221 (704)
. .. .+. .+ +.+..+|..+|..+ ..+|+++|+++|++|||+||++|. +..|+. ++
T Consensus 67 l~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~R~~~~~~la~~~A~~~g~~~I~~G~~~~D~~~~---~~~r~~---~~ 140 (232)
T 2pg3_A 67 LNELATSSLTRDSIPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFSGY---PDCRDE---FV 140 (232)
T ss_dssp HHHTSHHHHHHTTCCCCC---------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCSSSCC---GGGSHH---HH
T ss_pred HHHHhhhhcccccccccccccccCCCCCCeEechHHHHHHHHHHHHHHcCcCEEEEccCccccCCC---CCCCHH---HH
Confidence 1 10 000 11 22345788888777 899999999999999999999861 222222 23
Q ss_pred ccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCC-ceeeCCCCCC
Q 005288 222 AGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNR-DWVEDPTNRS 280 (704)
Q Consensus 222 aGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gL-p~veDpSN~d 280 (704)
.+|....+. ....++.++|||++++|+||+++++++|+ |+..+.|..+
T Consensus 141 ~~~~~~~~~-----------~~~~~~~i~~PL~~~~K~ei~~~a~~~gl~~~~~~~t~sC 189 (232)
T 2pg3_A 141 KALNQAIVL-----------GIARDIRFETPLMWLNKAETWALADYYQQLDTVRYHTLTC 189 (232)
T ss_dssp HHHHHHHHH-----------HHTSCCEEECTTTTCCHHHHHHHHHHTTCHHHHHHHCCCC
T ss_pred HHHHHHHHH-----------hCCCCeEEEEecCCCCHHHHHHHHHHcCCCcccccccCCC
Confidence 344322111 01234689999999999999999999999 7633444333
No 15
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=99.81 E-value=3.3e-20 Score=203.12 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=123.1
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhc-----CCeEE
Q 005288 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDM-----GIRCE 155 (704)
Q Consensus 81 ~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~L-----GIp~~ 155 (704)
++++|+||+|||+||++|++++.+. | .++.++|||++- -.+..+.+.++++|+.+ |++++
T Consensus 186 ~~~kvlvalSGGvDS~vll~ll~~~---G-----------~~v~av~v~~~~-~~~~~~~~~v~~~a~~l~~~~ggi~~~ 250 (413)
T 2c5s_A 186 VGGKVMVLLSGGIDSPVAAYLTMKR---G-----------VSVEAVHFHSPP-FTSERAKQKVIDLAQELTKYCKRVTLH 250 (413)
T ss_dssp TTEEEEEECCSSSHHHHHHHHHHHB---T-----------EEEEEEEEECTT-TSCHHHHHHHHHHHHHHGGGSSCEEEE
T ss_pred CCCeEEEEeCCCChHHHHHHHHHHc---C-----------CcEEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 4678999999999999999998752 2 378999999851 13466778889999988 99999
Q ss_pred EEEccccCCC----CCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccccc
Q 005288 156 IVRCDWLDGR----PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231 (704)
Q Consensus 156 Iv~~~~~~~~----~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf 231 (704)
+++++..... ......+..||+.+|+.+.++|++.|+++|++|||+||++|++++++. +|+.
T Consensus 251 vv~~~~~~~~i~~~~~~~~~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~dD~ae~~l~~l~---------~~~~----- 316 (413)
T 2c5s_A 251 LVPFTEVQKTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLDSMH---------TINE----- 316 (413)
T ss_dssp EEECHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSSTTSCCHHHHH---------HHGG-----
T ss_pred EEECcHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHh---------cccc-----
Confidence 9987653210 111236778999999999999999999999999999999998877654 2321
Q ss_pred ccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceee-CCCC
Q 005288 232 SSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVE-DPTN 278 (704)
Q Consensus 232 ~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ve-DpSN 278 (704)
..++.++|||+.++|+||+++++++|++.+. .|++
T Consensus 317 ------------~~~~~virPL~~l~K~eI~~~a~~~Gl~~~~~~p~~ 352 (413)
T 2c5s_A 317 ------------VTNYPVIRPLITMDKLEIIKIAEEIGTYDISIRPYE 352 (413)
T ss_dssp ------------GCCSCEECTTTTCCHHHHHHHHHHTTCHHHHTSCC-
T ss_pred ------------cCCCEEEeccCCCCHHHHHHHHHHcCCCccccCCCC
Confidence 1234699999999999999999999986553 3444
No 16
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=99.81 E-value=6.4e-20 Score=182.68 Aligned_cols=148 Identities=11% Similarity=0.141 Sum_probs=110.8
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccc
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~ 161 (704)
+++|+||+|||+||+||++++.++. .++.++|||||++ .+++.++++++|+++||+++++..+.
T Consensus 44 ~~~v~Va~SGGkDS~vLL~ll~~~~--------------~~v~~v~vd~g~~--~~e~~~~v~~~~~~~gi~~~v~~~~~ 107 (215)
T 1sur_A 44 PGEYVLSSSFGIQAAVSLHLVNQIR--------------PDIPVILTDTGYL--FPETYRFIDELTDKLKLNLKVYRATE 107 (215)
T ss_dssp CSEEEEECCCCTTHHHHHHHHHHHS--------------TTCEEEEEECSCB--CHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhC--------------CCCeEEEeeCCCC--CHHHHHHHHHHHHHhCCcEEEEeCCC
Confidence 4699999999999999999998752 2578999999995 46778999999999999999997653
Q ss_pred cC-------CCCCCCChH---HHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccccc
Q 005288 162 LD-------GRPKQGHLQ---EAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231 (704)
Q Consensus 162 ~~-------~~~~~gniE---e~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf 231 (704)
.. +..-..++. ..|...+...|.++++++|++++++|||.||..++ .+|+...
T Consensus 108 ~~~~~~~~~g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd~~~r--------------~~~~~~~--- 170 (215)
T 1sur_A 108 SAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSR--------------ANLPVLA--- 170 (215)
T ss_dssp CHHHHHHHHCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTSSSTT--------------TTCCSEE---
T ss_pred CHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhhhhhh--------------cCCCccc---
Confidence 21 000000111 13344455678889999999999999999995432 1232211
Q ss_pred ccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005288 232 SSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (704)
Q Consensus 232 ~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (704)
...+..++|||++++|+||++|++++|+||.
T Consensus 171 -----------~~~~~~~i~PLl~~t~~dI~~y~~~~~lp~~ 201 (215)
T 1sur_A 171 -----------IQRGVFKVLPIIDWDNRTIYQYLQKHGLKYH 201 (215)
T ss_dssp -----------EETTEEEECTTTTCCHHHHHHHHHHHTCCCC
T ss_pred -----------cCCCEEEEechHhCCHHHHHHHHHHhCCCCC
Confidence 1134678999999999999999999999995
No 17
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.77 E-value=6.6e-19 Score=180.43 Aligned_cols=172 Identities=12% Similarity=0.082 Sum_probs=131.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHH
Q 005288 61 TDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140 (704)
Q Consensus 61 ~~~~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Ea 140 (704)
++.+++.+.+...+++. +.++|+||+|||+||+++++++.+... ..+++++|+|||.+ +|.
T Consensus 4 ~~~~~~~~~l~~~i~~~---~~~~vvv~lSGGiDSs~~~~l~~~~~g------------~~~v~av~~~~~~~----~~~ 64 (257)
T 2e18_A 4 LDYDKVIERILEFIREK---GNNGVVIGISGGVDSATVAYLATKALG------------KEKVLGLIMPYFEN----KDV 64 (257)
T ss_dssp ECHHHHHHHHHHHHHHH---CTTCEEEECCSSHHHHHHHHHHHHHHC------------GGGEEEEECCSSCS----THH
T ss_pred CCHHHHHHHHHHHHHHh---CCCcEEEEecCCHHHHHHHHHHHHhcC------------CCcEEEEEeCCCCc----hHH
Confidence 45677778887777775 567899999999999999999876521 02689999999963 677
Q ss_pred HHHHHHHHhcCCeEEEEEccccCC------CCCCC--ChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHH
Q 005288 141 NIVSHRVSDMGIRCEIVRCDWLDG------RPKQG--HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRL 212 (704)
Q Consensus 141 e~V~kl~~~LGIp~~Iv~~~~~~~------~~~~g--niEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL 212 (704)
+.++++|+.+|+++++++++.... ..... ..+..++++|+.++.++|+++|+.+|+|||+.+|+
T Consensus 65 ~~a~~~a~~lgi~~~~i~i~~~~~~~~~~l~~~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~tg~~~e~~-------- 136 (257)
T 2e18_A 65 EDAKLVAEKLGIGYKVINIKPIVDSFVENLELNLDRKGLGNIMSRTRMIMLYAHANSLGRIVLGTSNRSEFL-------- 136 (257)
T ss_dssp HHHHHHHHHHTCEEEECCCHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCHHHHH--------
T ss_pred HHHHHHHHHhCCCEEEEEChHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcCCEEEEcCchhHHh--------
Confidence 889999999999999988764210 00001 23455566999999999999999999999988775
Q ss_pred hccCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc--eeeCCCCCCCch
Q 005288 213 SRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD--WVEDPTNRSPLF 283 (704)
Q Consensus 213 ~RGsGl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp--~veDpSN~d~~y 283 (704)
+|.+... ..+..+++||.+++|.||++|++.+|+| ++++|.+.+..+
T Consensus 137 -~Gy~t~~-----------------------g~~~~~i~Pl~~l~K~ev~~la~~~gip~~i~~~~ps~~l~~ 185 (257)
T 2e18_A 137 -TGYFTKW-----------------------GDGASDYAPIINLYKTEVWEIAKRIGVPERIVKKKPSAGLWE 185 (257)
T ss_dssp -HTCSCTT-----------------------STTCSSBCTTTTSCHHHHHHHHHHHTCCHHHHHSCCCCCSST
T ss_pred -cCCeecc-----------------------CCCccCEeecCCCcHHHHHHHHHHcCCCHHHhCCCCCCCcCC
Confidence 2222110 0123479999999999999999999999 688898888554
No 18
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=99.76 E-value=2e-18 Score=188.57 Aligned_cols=150 Identities=14% Similarity=0.122 Sum_probs=113.5
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCC-eEEEEEccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDW 161 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGI-p~~Iv~~~~ 161 (704)
++|+||+|||+||+++++++++.. + .+++++|||||+ .+|.+.++++|+++|+ ++++++++.
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~~--g-----------~~V~av~vd~g~----~~e~e~a~~~A~~lGi~~~~vvd~~~ 63 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKETY--R-----------AEVIAFTADIGQ----GEEVEEAREKALRTGASKAIALDLKE 63 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH--T-----------CEEEEEEEESSC----SSCHHHHHHHHHHHTCSEEEEEECHH
T ss_pred CcEEEEEeChHHHHHHHHHHHHhh--C-----------CcEEEEEEeCCC----HHHHHHHHHHHHHhCCCeEEEEeCcH
Confidence 479999999999999999987531 2 378999999998 2467889999999999 899988762
Q ss_pred cC--------CCC----CC--CChHHHHHHHHHHHHHHHHHHcCCCEeecccccc--hhHHHHHHHHhccCCCCCccccc
Q 005288 162 LD--------GRP----KQ--GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD--DQAELFILRLSRNSGVLGLAGMA 225 (704)
Q Consensus 162 ~~--------~~~----~~--gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaD--DqaET~LmrL~RGsGl~GLaGm~ 225 (704)
.+ ... .. ..-...+|..++..|.++|++.|+++|++|||+| ||++.-+ |+.++.
T Consensus 64 ef~~~~~~~~i~~~~~~e~~y~~g~~~~R~~~~~~L~~~A~~~G~~~IatG~~~d~nDq~~f~~----------g~~~l~ 133 (400)
T 1kor_A 64 EFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGNDQVRFEL----------TAYALK 133 (400)
T ss_dssp HHHHHTHHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHHH----------HHHHHC
T ss_pred HHHHHhhHHHHHcCCccccccccCCccchHHHHHHHHHHHHHcCCCEEEECCCCCcccHHHHHH----------HHHhcC
Confidence 11 000 00 0112248999999999999999999999999997 9998521 233332
Q ss_pred ccccccccccccccccccCCCeEEEeeCCCC---CHHHHHHHHHhCCCceeeCCCC
Q 005288 226 FSSQIFSSYAYSCHDDLKNHSILLVRPLLDF---SKDDMYKICQGGNRDWVEDPTN 278 (704)
Q Consensus 226 ~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~l---sK~EIr~y~~~~gLp~veDpSN 278 (704)
+ ++.+++||+++ +|+||++|++++||||..++++
T Consensus 134 p-------------------~l~ii~PL~~~~~~tK~eI~~ya~~~gip~~~~~~~ 170 (400)
T 1kor_A 134 P-------------------DIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEK 170 (400)
T ss_dssp T-------------------TCEEECGGGTCCCCSHHHHHHHHHHTTCCCC-----
T ss_pred C-------------------CCEEEEeecccccCCHHHHHHHHHHcCCCcccCCCC
Confidence 1 34689999999 9999999999999999976654
No 19
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=99.74 E-value=2.3e-18 Score=177.00 Aligned_cols=172 Identities=15% Similarity=0.206 Sum_probs=120.3
Q ss_pred CHHHHHHHH----HHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcH
Q 005288 62 DMTKYREAF----SRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137 (704)
Q Consensus 62 ~~~~~~e~f----~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~ 137 (704)
+.+++.+.+ +..+.+. ..++|+||+|||+||+++++++.+.. | .+++++|++|+.. +.
T Consensus 5 ~~~~~~~~l~~~l~d~v~~~---g~~~vvv~lSGGiDSsv~a~l~~~~~--g-----------~~v~av~~~~~~~--~~ 66 (249)
T 3p52_A 5 DWQKITEKMCDFIQEKVKNS---QSQGVVLGLSGGIDSALVATLCKRAL--K-----------ENVFALLMPTQIS--NK 66 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHTS---SCSEEEEECCSSHHHHHHHHHHHHHH--T-----------TSEEEEECCSCCS--SC
T ss_pred CHHHHHHHHHHHHHHHHHHh---CCCCEEEEcCCCHHHHHHHHHHHHHc--C-----------CcEEEEEecCCCC--CH
Confidence 444444444 4444443 34789999999999999999997642 1 3789999999975 34
Q ss_pred HHHHHHHHHHHhcCCeEEEEEccccC---CC----CCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHH
Q 005288 138 EEANIVSHRVSDMGIRCEIVRCDWLD---GR----PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFIL 210 (704)
Q Consensus 138 ~Eae~V~kl~~~LGIp~~Iv~~~~~~---~~----~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~Lm 210 (704)
++.+.++++|+.+|+++++++++... .. +...+.|..|+++|+.++..+|+++|+.+|.|||. +|. ++
T Consensus 67 ~~~~~a~~~a~~lgi~~~~v~i~~~~~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tgn~-se~---~~- 141 (249)
T 3p52_A 67 ANLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLVSLGNFAARIRMSLLYDYSALKNSLVIGTSNK-SEL---LL- 141 (249)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCH-HHH---HH-
T ss_pred HHHHHHHHHHHHhCCCEEEEECcHHHHHHHHhccccCCccHhHHHHHHHHHHHHHHHHHCCCeEEeCCCH-HHH---Hc-
Confidence 67788899999999999998875321 11 11114678889999999999999999998888875 332 21
Q ss_pred HHhccCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc--eeeCCCCCCCch
Q 005288 211 RLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD--WVEDPTNRSPLF 283 (704)
Q Consensus 211 rL~RGsGl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp--~veDpSN~d~~y 283 (704)
|.+ .+. .....+++||.+++|.||+++++.+|+| ++++|.+.+...
T Consensus 142 ----g~~-----t~~------------------gd~~~~i~PL~~l~K~eV~~la~~~gip~~i~~k~psa~L~~ 189 (249)
T 3p52_A 142 ----GYG-----TIY------------------GDLACAFNPIGSLYKSEIYALAKYLNLHENFIKKAPSADLWE 189 (249)
T ss_dssp ----TCS-----CTT------------------TTTCCSEETTTTSCHHHHHHHHHHTTCCHHHHHC--------
T ss_pred ----cch-----hhh------------------ccccCccccccCCcHHHHHHHHHHcCCcHHhcCCCCCcccCC
Confidence 111 010 0112379999999999999999999999 899999988543
No 20
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.73 E-value=1.6e-17 Score=171.43 Aligned_cols=174 Identities=13% Similarity=0.137 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHcC-CCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHH
Q 005288 63 MTKYREAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141 (704)
Q Consensus 63 ~~~~~e~f~~~i~~~~-l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae 141 (704)
.+++.+.+...++++. ....++|+||+|||+||+++++++.+.. +.++.++|+++|. .+.+|.+
T Consensus 5 ~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~~~l~~~~~-------------~~~v~av~~~~~~--~~~~e~~ 69 (268)
T 1xng_A 5 YQKLIVYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLCQKVF-------------KENAHALLMPSSV--SMPENKT 69 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHH-------------GGGEEEEECCCSS--SCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEccCcHHHHHHHHHHHHhC-------------CCCEEEEEeCCCC--CCHHHHH
Confidence 4444444444443321 1235689999999999999999997753 1268999999997 4678899
Q ss_pred HHHHHHHhcCCeEEEEEccccC------CCCCC-CChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhc
Q 005288 142 IVSHRVSDMGIRCEIVRCDWLD------GRPKQ-GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSR 214 (704)
Q Consensus 142 ~V~kl~~~LGIp~~Iv~~~~~~------~~~~~-gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~R 214 (704)
.++++|+.+|+++++++++... ..... ...+..++++||.++.++|++.|+.+|++||. .|++ .
T Consensus 70 ~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tg~~----~E~~-----~ 140 (268)
T 1xng_A 70 DALNLCEKFSIPYTEYSIAPYDAIFSSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSNK----SERM-----L 140 (268)
T ss_dssp HHHHHHHHHTCCEEECCCHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCH----HHHH-----H
T ss_pred HHHHHHHHcCCCEEEEeChHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHCCCEEEECCcH----HHHh-----c
Confidence 9999999999999998875421 00000 12466778899999999999999999999974 3554 2
Q ss_pred cCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc--eeeCCCCCCCch
Q 005288 215 NSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD--WVEDPTNRSPLF 283 (704)
Q Consensus 215 GsGl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp--~veDpSN~d~~y 283 (704)
|.+.. . ..+..+++||.+++|.||++|++.+|+| ++++|.+.+..+
T Consensus 141 Gy~t~-----~------------------gd~~~~i~PL~~l~K~ev~~la~~~gip~~i~~k~psa~l~~ 188 (268)
T 1xng_A 141 GYGTL-----F------------------GDLACAINPIGELFKTEVYELARRLNIPKKILNKPPSADLFV 188 (268)
T ss_dssp TCSCT-----T------------------TTTCCSEETTTTSCHHHHHHHHHHTTCCHHHHTSCCCCCSST
T ss_pred Ccccc-----c------------------CCCCeeEEecCCCCHHHHHHHHHHcCCcHHHhcCCCCcCcCC
Confidence 22110 0 0123589999999999999999999999 788888877554
No 21
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=99.73 E-value=9.3e-18 Score=183.99 Aligned_cols=161 Identities=16% Similarity=0.160 Sum_probs=120.4
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCe-EEEEEcc
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR-CEIVRCD 160 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp-~~Iv~~~ 160 (704)
+++|+||+|||+||+++++++++. | .+++++|+|||++ +|.+.++++|+++|++ +++++++
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~---G-----------~eV~av~vd~g~~----~e~e~a~~~A~~lGi~~~~vvd~~ 66 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQ---G-----------YDVIAYLANIGQK----EDFEEARKKALKLGAKKVFIEDVS 66 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHT---T-----------EEEEEEEEESSCC----CCHHHHHHHHHHHTCSEEEEEECH
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc---C-----------CEEEEEEEECCcH----HHHHHHHHHHHHhCCCEEEEEeCh
Confidence 478999999999999999998652 2 2799999999986 3578899999999998 8888775
Q ss_pred ccCC----------CCC--CC--ChHHHHHHHHHHHHHHHHHHcCCCEeeccccc--chhHHHHHHHHhccCCCCCcccc
Q 005288 161 WLDG----------RPK--QG--HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGM 224 (704)
Q Consensus 161 ~~~~----------~~~--~g--niEe~AR~~RY~~L~~~A~e~G~~~LatGHha--DDqaET~LmrL~RGsGl~GLaGm 224 (704)
..+. ... .. .-...+|..+|..+.++|++.|+++|++|||. +||++.. + |+.++
T Consensus 67 ~ef~~~~~~~~i~~~a~~e~~y~~g~~~aRp~i~~~l~~~A~~~Ga~~IatGh~~~~nDq~rf~---l-------g~~~l 136 (413)
T 2nz2_A 67 REFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFE---L-------SCYSL 136 (413)
T ss_dssp HHHHHHTHHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHH---H-------HHHHH
T ss_pred HHHHHHHHHHHHHhCcccccccccccccchHHHHHHHHHHHHHcCCCEEEECCcCcccchHHHH---H-------HHHhc
Confidence 2110 000 00 01224888999999999999999999999999 8998832 2 12222
Q ss_pred cccccccccccccccccccCCCeEEEeeCC------CC-CHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHH
Q 005288 225 AFSSQIFSSYAYSCHDDLKNHSILLVRPLL------DF-SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRM 290 (704)
Q Consensus 225 ~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL------~l-sK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~ 290 (704)
. .++.+++||+ ++ +|+||++|++++|+||.++|.+.. .+.+|.++.
T Consensus 137 ~-------------------p~l~ii~Pl~d~~~ll~~~sK~EI~~yA~~~Gip~~~~~~~~~-S~d~n~~g~ 189 (413)
T 2nz2_A 137 A-------------------PQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPW-SMDENLMHI 189 (413)
T ss_dssp C-------------------TTCEEECGGGCHHHHTTCC-CHHHHHHHHHTTCCCCSSCCCSS-CEEECSSCE
T ss_pred C-------------------CCCceeccccchhhhccCCCHHHHHHHHHHcCCCeecCCCCCC-CCChhhhhc
Confidence 2 1357899999 88 999999999999999998776643 344555433
No 22
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=99.73 E-value=2.7e-17 Score=175.06 Aligned_cols=177 Identities=13% Similarity=0.007 Sum_probs=117.4
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~ 162 (704)
++++||+|||+||+||++|+.++.... +..+.++|||||++ .+++.+++.++|+++|+++++...+..
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~----------~~~i~vv~vDtg~~--~~et~~~v~~~~~~~gi~l~v~~~~~~ 114 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPG----------KLPFPVMHVDTRWK--FQEMYRFRDQMVEEMGLDLITHINPDG 114 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTS----------CCSSCEEEECCSCC--CHHHHHHHHHHHHTTTCCEEEECC---
T ss_pred CCEEEEEcChHHHHHHHHHHHHhcccc----------CCCEEEEEEECCCC--CHHHHHHHHHHHHHcCCCEEEEeCchH
Confidence 589999999999999999998864321 12467899999995 467889999999999999999876532
Q ss_pred CCC--C-CCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhc--cCCCCCccccccccccccccccc
Q 005288 163 DGR--P-KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSR--NSGVLGLAGMAFSSQIFSSYAYS 237 (704)
Q Consensus 163 ~~~--~-~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~R--GsGl~GLaGm~~~~~vf~~~~~~ 237 (704)
... + ...+....|...+...|.++++++|++++++||++||......|++.+ |. +.++.+..+- +..+..
T Consensus 115 ~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~Des~~Ra~~~~~~~r~~----~~~~d~~~~r-p~l~~~ 189 (325)
T 1zun_A 115 VAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEEKSRAKERVYSFRDS----KHRWDPKNQR-PELWNV 189 (325)
T ss_dssp -----------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTSSGGGGGCCSEEEECT----TCCBCGGGCC-CCCSSC
T ss_pred HhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhhhhhcccceecccc----ccccCccccC-cchhhh
Confidence 110 0 001122344556667899999999999999999999876443344332 21 2233321110 000000
Q ss_pred ccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCC
Q 005288 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDP 276 (704)
Q Consensus 238 ~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDp 276 (704)
+......++...++||++++++||++|++++||||...-
T Consensus 190 ~n~~~~~g~~~~i~PLl~wt~~dIw~Yi~~~~lp~~~LY 228 (325)
T 1zun_A 190 YNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLY 228 (325)
T ss_dssp CCCCCCTTCEEEECTTTTCCHHHHHHHHHHHTCCCCSCC
T ss_pred ccccccCCCeEEEEchhhCCHHHHHHHHHHhCCCcchhh
Confidence 000011233567999999999999999999999995433
No 23
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=99.71 E-value=4.9e-17 Score=179.85 Aligned_cols=152 Identities=15% Similarity=0.159 Sum_probs=117.8
Q ss_pred CCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCC-eEEE
Q 005288 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEI 156 (704)
Q Consensus 78 ~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGI-p~~I 156 (704)
.+.+++||+||+|||+||+++++++++. | .+++|+|+|||.+. .+|.+.+++.|+++|+ ++++
T Consensus 6 ~l~~~~KVvVA~SGGlDSSvll~~L~e~---G-----------~eViavtvd~Gq~~--~~ele~a~~~A~~lGi~~~~v 69 (455)
T 1k92_A 6 HLPVGQRIGIAFSGGLDTSAALLWMRQK---G-----------AVPYAYTANLGQPD--EEDYDAIPRRAMEYGAENARL 69 (455)
T ss_dssp SCCTTSEEEEECCSSHHHHHHHHHHHHT---T-----------CEEEEEEEECCCTT--CSCTTHHHHHHHHHTCSEEEE
T ss_pred hhcCCCeEEEEEcChHHHHHHHHHHHHc---C-----------CEEEEEEEEcCCCC--HHHHHHHHHHHHHhCCCeEEE
Confidence 3567899999999999999999999652 3 37999999999863 3467889999999999 8999
Q ss_pred EEccccCCC--------------CC---CCChHHHHHHHHHHHHHHHHHHcCCCEeecccc--cchhHHHHHHHHhccCC
Q 005288 157 VRCDWLDGR--------------PK---QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH--ADDQAELFILRLSRNSG 217 (704)
Q Consensus 157 v~~~~~~~~--------------~~---~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHh--aDDqaET~LmrL~RGsG 217 (704)
++++..+.. .. -......+|.+++..|.++|++.|+++|++||| .+||+.- ++.
T Consensus 70 vD~~eef~~~v~p~i~~na~y~~eg~rcY~l~t~~aRp~i~~~l~e~A~e~Gad~IAtGht~kgnDq~rf---~~~---- 142 (455)
T 1k92_A 70 IDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERF---YRY---- 142 (455)
T ss_dssp EECHHHHHHHHHHHHHHTCCCCEETTEECCCHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTSSHHHHH---HHH----
T ss_pred EeChHHHHHHhHHHHHcCCcccccCceecccCCcchHHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHH---HHH----
Confidence 998532110 00 112456789999999999999999999999997 5898741 111
Q ss_pred CCCcccccccccccccccccccccccCCCeEEEeeCCC-------CCHHHHHHHHHhCCCceee
Q 005288 218 VLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD-------FSKDDMYKICQGGNRDWVE 274 (704)
Q Consensus 218 l~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~-------lsK~EIr~y~~~~gLp~ve 274 (704)
+.++. .++.++.|+.+ ++|+||++|++++||||..
T Consensus 143 ---~~al~-------------------p~l~viaPlr~~~ll~~~lsK~EI~~yA~~~GIp~~~ 184 (455)
T 1k92_A 143 ---GLLTN-------------------AELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKM 184 (455)
T ss_dssp ---HHHHC-------------------TTCEEECGGGCHHHHHHSSSHHHHHHHHHHTTCCCCC
T ss_pred ---HHhcC-------------------CCCEEECeeccccccccCCCHHHHHHHHHHcCCCccc
Confidence 11111 13568999987 8999999999999999974
No 24
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=99.70 E-value=2.8e-17 Score=168.43 Aligned_cols=148 Identities=11% Similarity=0.151 Sum_probs=110.1
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccc
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~ 161 (704)
+++|+||+|||+||+||++++.+.. .++.++|+|||++ .+++.++++++|+++||+++++..+.
T Consensus 45 ~~~v~va~SGG~DS~vLL~ll~~~~--------------~~v~vv~idtg~~--~~et~~~~~~~~~~~gi~~~v~~~~~ 108 (252)
T 2o8v_A 45 PGEYVLSSSFGIQAAVSLHLVNQIR--------------PDIPVILTDTGYL--FPETYRFIDELTDKLKLNLKVYRATE 108 (252)
T ss_dssp CSCEEEECCCSTTHHHHHHHHHHHS--------------TTCEEEECCCSCB--CHHHHHHHHHHHHHTTCEEEECCCSS
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHhC--------------CCCeEEEecCCCC--CHHHHHHHHHHHHHhCCceEEEcCCC
Confidence 4689999999999999999998752 1567999999995 46788999999999999999886543
Q ss_pred cCC--CCCCC-----ChH---HHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCccccccccccc
Q 005288 162 LDG--RPKQG-----HLQ---EAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231 (704)
Q Consensus 162 ~~~--~~~~g-----niE---e~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf 231 (704)
... ....+ +++ ..|...+...|.+++++.|++++++||++||..++ ++|+...
T Consensus 109 ~~~~~~~~~g~~~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~~tG~r~dds~~R--------------~~l~~~~--- 171 (252)
T 2o8v_A 109 SAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSR--------------ANLPVLA--- 171 (252)
T ss_dssp CHHHHHHHTCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTCSEEEECCCSTTTTCC--------------TTSCSEE---
T ss_pred CHHHHHHHcCCccccCCchHHHHHHHHHHHHHHHHHHhcCCcEEEEeccccccccc--------------ccCceee---
Confidence 210 00001 111 13344455678889999999999999999996532 1222211
Q ss_pred ccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005288 232 SSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (704)
Q Consensus 232 ~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (704)
...++.+++||++++|+||++|++++||||.
T Consensus 172 -----------~~~~~~~i~PL~~wt~~dV~~y~~~~~lp~~ 202 (252)
T 2o8v_A 172 -----------IQRGVFKVLPIIDWDNRTIYQYLQKHGLKYH 202 (252)
T ss_dssp -----------ESSSSEEECGGGSCCHHHHHHHHHHTTCCCC
T ss_pred -----------cCCCeEEEechhhCCHHHHHHHHHHcCCCCC
Confidence 1234678999999999999999999999994
No 25
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=99.69 E-value=9e-17 Score=165.07 Aligned_cols=175 Identities=13% Similarity=0.118 Sum_probs=125.7
Q ss_pred CCHHHHHHHHHHHHHHcC-CCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHH
Q 005288 61 TDMTKYREAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139 (704)
Q Consensus 61 ~~~~~~~e~f~~~i~~~~-l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~E 139 (704)
++.++..+++...++++. -...++|+||+|||+||+++++++.+.. . +..++|++++. .+.+|
T Consensus 7 ~~~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~a~l~~~~~-------------~-~~~av~~~~~~--~~~~~ 70 (249)
T 3fiu_A 7 FSPKEYSQKLVNWLSDSCMNYPAEGFVIGLSGGIDSAVAASLAVKTG-------------L-PTTALILPSDN--NQHQD 70 (249)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTCSEEEEECCSSHHHHHHHHHHHHTT-------------S-CEEEEECCCTT--SCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHhC-------------C-CCEEEEecCCC--CCHHH
Confidence 455555555555444431 2335789999999999999999987641 1 23499999986 46778
Q ss_pred HHHHHHHHHhcCCeEEEEEccccCCC---------CCCCChHHHH-----HHHHHHHHHHHHHHcCCCEeecccccchhH
Q 005288 140 ANIVSHRVSDMGIRCEIVRCDWLDGR---------PKQGHLQEAA-----RDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (704)
Q Consensus 140 ae~V~kl~~~LGIp~~Iv~~~~~~~~---------~~~gniEe~A-----R~~RY~~L~~~A~e~G~~~LatGHhaDDqa 205 (704)
.+.++++|+.+|+++++++++..+.. ......+..| +++|+..+..+|+++|+.+|+|||. +
T Consensus 71 ~~~a~~~a~~lgi~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~r~R~~~l~~~A~~~g~~vl~TGn~-s--- 146 (249)
T 3fiu_A 71 MQDALELIEMLNIEHYTISIQPAYEAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQYNRIVIGTDNA-C--- 146 (249)
T ss_dssp HHHHHHHHHHHTCEEEECCCHHHHHHHHHHTGGGC------CHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCCH-H---
T ss_pred HHHHHHHHHHhCCCEEEEEChHHHHHHHHHHHhhccCCCCcChhHHHHHHHHHHHHHHHHHHHHcCCEEEECCCH-H---
Confidence 89999999999999999887532100 1011233334 7899999999999999999999964 3
Q ss_pred HHHHHHHhccCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc--eeeCCCCCCCch
Q 005288 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD--WVEDPTNRSPLF 283 (704)
Q Consensus 206 ET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp--~veDpSN~d~~y 283 (704)
|+.. |...+.| .+..+++||.+++|.||+++++.+|+| +++.|...+..+
T Consensus 147 E~~~-------G~~t~~g---------------------d~~~~i~PL~~l~K~eVr~lA~~lglp~~i~~k~psa~L~~ 198 (249)
T 3fiu_A 147 EWYM-------GYFTKFG---------------------DGAADILPLVNLKKSQVFELGKYLDVPKNILDKAPSAGLWQ 198 (249)
T ss_dssp HHHH-------TCSCTTT---------------------TTCCSBCTTTTCCHHHHHHHHHHTTCCHHHHHSCCCCCSST
T ss_pred HHhc-------CchhccC---------------------CCCcceeecccCcHHHHHHHHHHcCCcHHHccCCCCCccCC
Confidence 4432 2111111 122479999999999999999999999 999999999665
No 26
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.3e-15 Score=156.97 Aligned_cols=152 Identities=9% Similarity=0.048 Sum_probs=107.9
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCC----eEEEEE
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI----RCEIVR 158 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGI----p~~Iv~ 158 (704)
++|+||+|||+||+||++|+.+.... ..++.++|+|||++ .++..++++++++++|+ ++++..
T Consensus 42 ~~v~va~SGGkDS~vLL~ll~~~~~~-----------~~~i~vv~iDtg~~--~~et~~~v~~~~~~~gl~~~~~l~v~~ 108 (261)
T 2oq2_A 42 PHLFQTTAFGLTGLVTIDMLSKLSEK-----------YYMPELLFIDTLHH--FPQTLTLKNEIEKKYYQPKNQTIHVYK 108 (261)
T ss_dssp SSEEEECCCCHHHHHHHHHHHHHTTT-----------SCCCEEEEECCSCB--CHHHHHHHHHHHHHHTGGGTCCCEEEC
T ss_pred CCEEEEecCCHHHHHHHHHHHHhCcc-----------CCCeeEEEecCCCC--CHHHHHHHHHHHHHhCCCCCCCeEEEe
Confidence 47999999999999999999876321 12567999999995 46788999999999999 998886
Q ss_pred cccc----CCCCCCC-ChH-----HHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCcccccccc
Q 005288 159 CDWL----DGRPKQG-HLQ-----EAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSS 228 (704)
Q Consensus 159 ~~~~----~~~~~~g-niE-----e~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~ 228 (704)
.+.. ......| +.. ..|...+...|.++++++|++.+++||+.||... |. +++...
T Consensus 109 ~~~~~~~~~~~~~~G~~~~~~~~~~cc~~~K~~pl~~~l~~~g~~~~~tG~R~dds~~-------R~-------~~~~~~ 174 (261)
T 2oq2_A 109 PDGCESEADFASKYGDFLWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSA-------RS-------QLSIIE 174 (261)
T ss_dssp STTCSSHHHHHHHHCTTHHHHCHHHHHHHHTHHHHHHHHHHTTCSEEECCCCGGGCGG-------GG-------GCCSEE
T ss_pred cCCccCHHHHHHHhCCCccccChHHHHHHHhHHHHHHHHHHcCCCEEEEeccccchHH-------Hc-------cCCcee
Confidence 5410 0000001 122 2222333455778899999999999999999532 21 122111
Q ss_pred cccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005288 229 QIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (704)
Q Consensus 229 ~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (704)
.....++..++||++++++||++|++++||||.
T Consensus 175 ------------~~~~~~~~ki~PL~~wt~~dV~~Yi~~~~lp~~ 207 (261)
T 2oq2_A 175 ------------IDELNGILKINPLINWTFEQVKQYIDANNVPYN 207 (261)
T ss_dssp ------------EETTTTEEEECTTTTCCHHHHHHHHHHHTCCCC
T ss_pred ------------ecCCCCeEEEechHhCCHHHHHHHHHHcCCCCC
Confidence 001135667999999999999999999999995
No 27
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=99.54 E-value=5.2e-14 Score=154.34 Aligned_cols=146 Identities=14% Similarity=0.161 Sum_probs=108.9
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCC-eEEEEEcc
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCD 160 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGI-p~~Iv~~~ 160 (704)
.+||+||+|||+||+++++++++. | .+++++|+|+|.+ +|.+.+++.|+++|+ +++++++.
T Consensus 14 ~~KVVVA~SGGlDSSv~a~~Lke~---G-----------~eViavt~d~Gq~----~Ele~A~~vA~~lGi~~~~VvDl~ 75 (421)
T 1vl2_A 14 KEKVVLAYSGGLDTSVILKWLCEK---G-----------FDVIAYVANVGQK----DDFVAIKEKALKTGASKVYVEDLR 75 (421)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHT---T-----------CEEEEEEEESSCC----CCHHHHHHHHHHHTCSEEEEEECH
T ss_pred cCCEEEEeCCcHHHHHHHHHHHHC---C-----------CeEEEEEEEcCCH----HHHHHHHHHHHHcCCceEEEEecH
Confidence 378999999999999999998652 3 3799999999985 357788999999999 99999986
Q ss_pred ccCC--------CC---CCC---ChHHHHHHHHHHHHHHHHHHcCCCEeeccccc--chhHHHHHHHHhccCCCCCcccc
Q 005288 161 WLDG--------RP---KQG---HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGM 224 (704)
Q Consensus 161 ~~~~--------~~---~~g---niEe~AR~~RY~~L~~~A~e~G~~~LatGHha--DDqaET~LmrL~RGsGl~GLaGm 224 (704)
..+. .. ..+ .....||..-...+.++|++.|+++|++||+. +|+.. + ++. +.+.
T Consensus 76 eef~~~v~~p~i~~na~yeg~Y~~g~~l~Rp~i~~~l~~~A~~~Gad~IA~G~~~kgnDq~r-f--~~~-------~~al 145 (421)
T 1vl2_A 76 REFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVR-F--ELT-------YAAL 145 (421)
T ss_dssp HHHHHHTHHHHHTTTCCBTTTBCCHHHHHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHH-H--HHH-------HHHH
T ss_pred HHHHHhhhhHHHhcCCcccCceeCCCcccHHHHHHHHHHHHHHcCCCEEEECCeeCCCChHH-H--HHH-------HHhc
Confidence 3221 00 011 22344788888889999999999999999997 57653 1 110 0001
Q ss_pred cccccccccccccccccccCCCeEEEeeCCC-------CCHHHHHHHHHhCCCceee
Q 005288 225 AFSSQIFSSYAYSCHDDLKNHSILLVRPLLD-------FSKDDMYKICQGGNRDWVE 274 (704)
Q Consensus 225 ~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~-------lsK~EIr~y~~~~gLp~ve 274 (704)
. ..+.++.||.+ ++|+||++|++++|||+..
T Consensus 146 ~-------------------p~~~IiaPl~d~~~l~~~lsK~Eir~~A~e~Glp~~~ 183 (421)
T 1vl2_A 146 N-------------------PNLKVISPWKDPEFLAKFKGRTDLINYAMEKGIPIKV 183 (421)
T ss_dssp C-------------------TTSEEECGGGCHHHHHHTC--CHHHHHHHHHTCCCCS
T ss_pred C-------------------CCCeEEcccCchhhccccCCHHHHHHHHHHcCCCccc
Confidence 1 12578999999 7999999999999999975
No 28
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=99.46 E-value=3.1e-13 Score=140.24 Aligned_cols=152 Identities=11% Similarity=0.107 Sum_probs=103.4
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~ 162 (704)
++|+||+| |+||+||++|+.+. + .++.++|+|||++ .++..++++++|+++|++++++..+..
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~---~-----------~~i~vv~iDtg~~--~~et~~~v~~~~~~~gi~l~v~~~~~~ 117 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKL---N-----------RNVKVFSLDTGRL--HPETYRFIDQVREHYGIAIDVLSPDPR 117 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHH---C-----------TTCCEEEECCSCC--CHHHHHHHHHHHHHHTCCCEEECCCHH
T ss_pred CCEEEEee-cHHHHHHHHHHHHh---C-----------CCceEEEEeCCCC--CHHHHHHHHHHHHHHCCeEEEEeCCcc
Confidence 68999999 99999999999775 1 1467899999995 577889999999999999998865421
Q ss_pred C----CCCCCC------ChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCcccccccccccc
Q 005288 163 D----GRPKQG------HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS 232 (704)
Q Consensus 163 ~----~~~~~g------niEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~ 232 (704)
. ...... +....|+..+.+-|.++.+ +++.+++||+.||..++ | ++++....-
T Consensus 118 ~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~r~l~--~~~~~itG~r~dds~~~------R-------~~~~~~~~d-- 180 (275)
T 2goy_A 118 LLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLA--GVRAWATGQRRDQSPGT------R-------SQVAVLEID-- 180 (275)
T ss_dssp HHHHHHHHHCSCHHHHHCTHHHHHHHTHHHHHHHHH--TCSEEECCCCGGGTTSC------S-------CCCCSEEEC--
T ss_pred CHHHHHHHhCCCCccccCHHHHHHHHHHHHHHHHHH--hcCchhcCchhhhhhhh------h-------hhCcccccc--
Confidence 0 000000 1233344444555666665 46789999999995211 1 112211100
Q ss_pred cccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005288 233 SYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (704)
Q Consensus 233 ~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (704)
.. + . ....++..++||++++++||++|++++||||.
T Consensus 181 ~~--~--~-~~~~g~~~i~PL~~wt~~dV~~Yi~~~~lp~~ 216 (275)
T 2goy_A 181 GA--F--S-TPEKPLYKFNPLSSMTSEEVWGYIRMLELPYN 216 (275)
T ss_dssp TT--T--C-CSSSCCEEECTTTTCCHHHHHHHHHHTTCCCC
T ss_pred cc--c--c-cCCCCeEEEechHhCCHHHHHHHHHHhCCCCC
Confidence 00 0 0 01245678999999999999999999999984
No 29
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=99.40 E-value=1e-12 Score=136.82 Aligned_cols=188 Identities=11% Similarity=0.026 Sum_probs=117.9
Q ss_pred hccccCCcCCccCCHHHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhC-CCCCCCCCCCCCCcEEEEE
Q 005288 49 CKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGLLAIT 127 (704)
Q Consensus 49 c~~~~~w~~~~~~~~~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~-g~~~~~~~~gi~~~L~AVh 127 (704)
-++.++|+ ..-.++.....++..+++.+ ..++|+||+|||+||+++++|+++.... |.. ...-+.++++++
T Consensus 11 ~~~~~~~~--~~~~i~~~~~~L~~~l~~~g--~~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~----~~~~~~~v~av~ 82 (275)
T 1wxi_A 11 LGAKPQIN--AEEEIRRSVDFLKSYLQTYP--FIKSLVLGISGGQDSTLAGKLCQMAINELRLE----TGNESLQFIAVR 82 (275)
T ss_dssp HTCCSCCC--HHHHHHHHHHHHHHHHHHST--TCCEEEEECCSSHHHHHHHHHHHHHHHHHHHH----HCCTTCEEEEEE
T ss_pred hCCCCCCC--HHHHHHHHHHHHHHHHHHcC--CCCCEEEECcCcHHHHHHHHHHHHHHHHhccc----cccccceEEEEE
Confidence 46776676 33334445555666666543 1358999999999999999998775321 000 000012689999
Q ss_pred EeCCCCCCcHHHHHHHHHHHHhcCC-eEEEEEccccCCC--------CCCCC---hHHHHHHHHHHHHHHHHHHcCCCEe
Q 005288 128 VDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDWLDGR--------PKQGH---LQEAARDMRYRLFQKVCIQHQIGVL 195 (704)
Q Consensus 128 VDHGLR~eS~~Eae~V~kl~~~LGI-p~~Iv~~~~~~~~--------~~~gn---iEe~AR~~RY~~L~~~A~e~G~~~L 195 (704)
+++|.+. +.+.++++|+.+|+ ++++++++..+.. ....+ .+....++|...+..+|.+.|+.+|
T Consensus 83 ~~~~~~~----~~~dA~~va~~lgi~~~~~i~i~~~~~~~~~~l~~~g~~~~~~~~~N~~aR~r~~~l~~~A~~~g~lvl 158 (275)
T 1wxi_A 83 LPYGVQA----DEQDCQDAIAFIQPDRVLTVNIKGAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVV 158 (275)
T ss_dssp CCSSSCT----THHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEB
T ss_pred eCCCCcc----CHHHHHHHHHHcCCCeEEEEecHHHHHHHHHHHHhcCCCCCCchhhhhhhhHHHHHHHHHHHHCCCEEE
Confidence 9987532 45667888899999 9999876532100 00011 2222335678888899999999888
Q ss_pred ecccccchhHHHHHHHHhccCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc--ee
Q 005288 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD--WV 273 (704)
Q Consensus 196 atGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp--~v 273 (704)
.|||..++ .. |.. ... . .....+-||.+++|.||+++++.+|+| .+
T Consensus 159 gTgn~~E~---------~~--Gy~---t~~-----------------g-d~~~~~~PL~~l~K~eVr~la~~lglp~~i~ 206 (275)
T 1wxi_A 159 GTDHAAEA---------IT--GFF---TKY-----------------G-DGGTDINPLYRLNKRQGKQLLAALACPEHLY 206 (275)
T ss_dssp CCCCHHHH---------TT--TCS---CTT-----------------T-TTCCSBCTTTTCCHHHHHHHHHHTTCCGGGT
T ss_pred ECccHHHH---------cc--Ccc---ccc-----------------C-CCccceeeccCCCHHHHHHHHHHhCCcHhhc
Confidence 88876543 11 211 000 0 112368899999999999999999998 45
Q ss_pred eCCCCCC
Q 005288 274 EDPTNRS 280 (704)
Q Consensus 274 eDpSN~d 280 (704)
+.|...+
T Consensus 207 ~k~psa~ 213 (275)
T 1wxi_A 207 KKAPTAD 213 (275)
T ss_dssp SCC----
T ss_pred cCCCCCc
Confidence 5555444
No 30
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=99.39 E-value=2.9e-13 Score=143.01 Aligned_cols=121 Identities=9% Similarity=0.017 Sum_probs=90.7
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhc-------CCe
Q 005288 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDM-------GIR 153 (704)
Q Consensus 81 ~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~L-------GIp 153 (704)
.+.++++++|| +||+++++++.+ .| .++.++|++++. .+.+.++++|+.+ +++
T Consensus 178 ~~~kvlvllSG-vDS~vaa~ll~~---~G-----------~~v~~v~~~~~~-----~~~~~a~~~a~~l~~~~~~~~i~ 237 (307)
T 1vbk_A 178 TEGRMIGILHD-ELSALAIFLMMK---RG-----------VEVIPVYIGKDD-----KNLEKVRSLWNLLKRYSYGSKGF 237 (307)
T ss_dssp TTCEEEEECSS-HHHHHHHHHHHH---BT-----------CEEEEEEESCSS-----HHHHHHHHHHHHHHTTCTTSCCC
T ss_pred CCCcEEEEEeC-CcHHHHHHHHHh---CC-----------CeEEEEEEEECH-----HHHHHHHHHHHHHhhhccCCCCc
Confidence 34799999999 999999999864 33 379999999653 3456678888777 889
Q ss_pred EEEEE-ccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhH-HHHHHHHhccCCCCCccccccccccc
Q 005288 154 CEIVR-CDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA-ELFILRLSRNSGVLGLAGMAFSSQIF 231 (704)
Q Consensus 154 ~~Iv~-~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqa-ET~LmrL~RGsGl~GLaGm~~~~~vf 231 (704)
+++++ +.. .+ ++|++.|+++|+||||++|.+ +|..++. +..
T Consensus 238 ~~vv~~~~~--------------------~~-~~A~~~ga~~I~tG~~~~~~~~qt~~l~~-----------~~~----- 280 (307)
T 1vbk_A 238 LVVAESFDR--------------------VL-KLIRDFGVKGVIKGLRPNDLNSEVSEITE-----------DFK----- 280 (307)
T ss_dssp CEEESSHHH--------------------HH-HHHHHHTCCEEECCCCGGGCCTTCHHHHH-----------HHH-----
T ss_pred EEEeCCCHH--------------------HH-HHHHHcCCCEEEECcccchhccccHHHhh-----------hcc-----
Confidence 88875 321 01 889999999999999998764 2332221 111
Q ss_pred ccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCC
Q 005288 232 SSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNR 270 (704)
Q Consensus 232 ~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gL 270 (704)
.....++|||..++|+||+++|++.|+
T Consensus 281 ------------~~~~~vl~PL~~~~K~eI~~~a~~iGl 307 (307)
T 1vbk_A 281 ------------MFPVPVYYPLIALPEEYIKSVKERLGL 307 (307)
T ss_dssp ------------HCSSCEECHHHHSCHHHHHHHHHHHTC
T ss_pred ------------CcCCeEEEccCCCCHHHHHHHHHHcCC
Confidence 012458999999999999999999875
No 31
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=99.39 E-value=1.2e-12 Score=135.89 Aligned_cols=185 Identities=13% Similarity=0.064 Sum_probs=119.4
Q ss_pred hccccCCcCCccCCHHHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhC-CCCCCCCCCCCCCcEEEEE
Q 005288 49 CKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGLLAIT 127 (704)
Q Consensus 49 c~~~~~w~~~~~~~~~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~-g~~~~~~~~gi~~~L~AVh 127 (704)
.++.++|+ ..-.++.+...++..++..+ .++|+||+|||+||+++++|+++.... |.. .+ ..++++++
T Consensus 10 ~~~~~~~~--~~~~i~~~~~~L~d~v~~~g---~~~vvvgLSGGvDSsv~a~La~~a~~~lg~~-----~~-~~~v~av~ 78 (271)
T 1kqp_A 10 LHVKPSID--PKQEIEDRVNFLKQYVKKTG---AKGFVLGISGGQDSTLAGRLAQLAVESIREE-----GG-DAQFIAVR 78 (271)
T ss_dssp HTCCSSCC--HHHHHHHHHHHHHHHHHHHT---CCEEEEECCSSHHHHHHHHHHHHHHHHHHHT-----TC-CCEEEEEE
T ss_pred hCCCCCCC--HHHHHHHHHHHHHHHHHHcC---CCCEEEECCCCHHHHHHHHHHHHHHHHhccc-----CC-CceEEEEE
Confidence 57777777 33334555566666666543 358999999999999999998765310 000 00 02688999
Q ss_pred EeCCCCCCcHHHHHHHHHHHHhcCC-eEEEEEccccC-----------CCCCCC-ChHHHHHHHHHHHHHHHHHHcCCCE
Q 005288 128 VDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDWLD-----------GRPKQG-HLQEAARDMRYRLFQKVCIQHQIGV 194 (704)
Q Consensus 128 VDHGLR~eS~~Eae~V~kl~~~LGI-p~~Iv~~~~~~-----------~~~~~g-niEe~AR~~RY~~L~~~A~e~G~~~ 194 (704)
+++|.+ .+.+.++++|+.+|+ ++++++++... ..+... ..+....++|...+..+|.+.|+.+
T Consensus 79 ~~~~~~----~d~~~A~~va~~lgi~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~N~~aR~r~~~l~~~A~~~g~lv 154 (271)
T 1kqp_A 79 LPHGTQ----QDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLV 154 (271)
T ss_dssp CCSSSC----TTHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred eCCCCC----CCHHHHHHHHHhcCCCeEEEeccHHHHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHCCCEE
Confidence 998753 235667888899999 99988765321 111100 1122223467788889999999988
Q ss_pred eecccccchhHHHHHHHHhccCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc--e
Q 005288 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD--W 272 (704)
Q Consensus 195 LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp--~ 272 (704)
|.|||..++ .. |.. ... . .....+-||.+++|.||+++++.+|+| .
T Consensus 155 l~tgn~~E~---------~~--Gy~---t~~-----------------g-d~~~~~~Pl~~l~K~eVr~la~~lglp~~i 202 (271)
T 1kqp_A 155 LGTDHAAEA---------VT--GFF---TKY-----------------G-DGGADLLPLTGLTKRQGRTLLKELGAPERL 202 (271)
T ss_dssp BCCCCHHHH---------TT--TCS---CTT-----------------T-TTCCSBCTTTTCCHHHHHHHHHHTTCCTHH
T ss_pred EECccHHHh---------cc--CCc---ccc-----------------c-cccccccccccCCHHHHHHHHHHcCCCHhh
Confidence 888775332 11 211 000 0 112358899999999999999999998 4
Q ss_pred eeCCCCCC
Q 005288 273 VEDPTNRS 280 (704)
Q Consensus 273 veDpSN~d 280 (704)
++.|...+
T Consensus 203 ~~k~psa~ 210 (271)
T 1kqp_A 203 YLKEPTAD 210 (271)
T ss_dssp HHSCCBCC
T ss_pred ccCCCCcc
Confidence 55555555
No 32
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=99.35 E-value=9.7e-12 Score=131.24 Aligned_cols=151 Identities=14% Similarity=0.120 Sum_probs=101.2
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCC---------CCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCe
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGG---------FNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR 153 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g---------~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp 153 (704)
++|+||+|||+||+||++|+.+..... .+. .-......++.++|||.|. +.++..+++.++++++|++
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~i~vv~iDtg~--~fpet~~fv~~~~~~ygl~ 130 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDF-EFQSFPMQRLPTVFIDQEE--TFPTLENFVLETSERYCLS 130 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC---------CCCCCEEEEECCCTT--CCHHHHHHHHHHHHHTTEE
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccc-cccccCCCCeeEEEEeCCC--CCHHHHHHHHHHHHHcCCC
Confidence 689999999999999999998753110 000 0000012368899999997 6888999999999999999
Q ss_pred EEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHH-cCCCEeecccccchhHHHHHHHHhccCCCCCcccccccccccc
Q 005288 154 CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQ-HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS 232 (704)
Q Consensus 154 ~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e-~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~ 232 (704)
++++..++.. ...+.+. +.++++. -+.++|++||+.||.. + .++..+....
T Consensus 131 l~v~~~~~~~----~~~l~~~--------~~~~~k~~p~~~aii~G~Rrdds~-----------~-r~l~~~~~~d---- 182 (306)
T 2wsi_A 131 LYESQRQSGA----SVNMADA--------FRDFIKIYPETEAIVIGIRHTDPF-----------G-EALKPIQRTD---- 182 (306)
T ss_dssp EEECCC---------CCHHHH--------HHHHHHHCTTCCEEECCCCCCSSS-----------C-CCCCSEEECC----
T ss_pred EEEEeCCccc----cccHHHH--------HHHHHhhCCCCcEEEEEEeccccc-----------c-cccCceeccC----
Confidence 9887654321 1233332 3344555 3688999999999943 1 1222222100
Q ss_pred cccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005288 233 SYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (704)
Q Consensus 233 ~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (704)
..-.++..++||++++++||+.|+..+||||.
T Consensus 183 ---------~~~p~~~ri~PL~dWt~~DVw~Yi~~~~lpy~ 214 (306)
T 2wsi_A 183 ---------SNWPDFMRLQPLLHWDLTNIWSFLLYSNEPIC 214 (306)
T ss_dssp ---------TTSCSCEEECTTTTCCHHHHHHHHHHHCCCBC
T ss_pred ---------CCCCCcEEEeChHHCCHHHHHHHHHHcCCCCC
Confidence 00013567999999999999999999999993
No 33
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=99.32 E-value=8.1e-12 Score=130.57 Aligned_cols=191 Identities=14% Similarity=0.049 Sum_probs=125.3
Q ss_pred hhhhhccccCCcCCccCCHHHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhC-CCCCCCCCCCCCCcE
Q 005288 45 IRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGL 123 (704)
Q Consensus 45 ~~~~c~~~~~w~~~~~~~~~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~-g~~~~~~~~gi~~~L 123 (704)
+..+|++.+.|. ..-.++.....++.++++.+ .++++||+|||+||++++.++++.... |.. ....+.++
T Consensus 8 ~~~~~~~~~~~~--~~~~i~~~v~~L~d~l~~~g---~~~vvvglSGGvDSal~a~l~~~A~~~Lg~~----~~~~~~~v 78 (279)
T 3q4g_A 8 IREEMRVLPSID--PQFEIERRVAFIKRKLTEAR---YKSLVLGISGGVDSTTCGRLAQLAVEELNQQ----HNTTEYQF 78 (279)
T ss_dssp HHHHHTCCSSCC--HHHHHHHHHHHHHHHHHHHT---CCEEEEECCSSHHHHHHHHHHHHHHHHHHHH----TTCSCCEE
T ss_pred HHHHHCCCCCCC--HHHHHHHHHHHHHHHHHHcC---CCCEEEEccCCHHHHHHHHHHHHHHHHhCcc----cccCCceE
Confidence 467899998887 44445566666677777654 358999999999999999987654221 000 00012378
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHhcCC-eEEEEEccccCCC-----------------CCCC---ChHHHHHHHHHHH
Q 005288 124 LAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDWLDGR-----------------PKQG---HLQEAARDMRYRL 182 (704)
Q Consensus 124 ~AVhVDHGLR~eS~~Eae~V~kl~~~LGI-p~~Iv~~~~~~~~-----------------~~~g---niEe~AR~~RY~~ 182 (704)
+++++++|-+. +.+.++++|+.+|+ ++++++++..+.. .... ..+....++|...
T Consensus 79 ~av~~p~~~~~----~~~~A~~~a~~lgi~~~~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~NiqaR~R~~~ 154 (279)
T 3q4g_A 79 IAVRLPYGEQK----DEDEAQLALSFIRPTHSVSVNIKAGVDGLHAASHHALANTGLIPSDPAKVDFIKGNVKARARMVA 154 (279)
T ss_dssp EEEECCSSSCS----CHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHHHHHTCSCSSCCCHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCChH----HHHHHHHHHHHhCCCeEEEEECHHHHHHHHHHHHHHhhhhcccccCCCcccchhhhHHHHHHHHH
Confidence 99999988532 24567888999999 8999886532110 0001 1234446778899
Q ss_pred HHHHHHHcCCCEeecccccchhHHHHHHHHhccCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHH
Q 005288 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262 (704)
Q Consensus 183 L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr 262 (704)
+..+|.++|+-+|.|||-.+ ..+ |..-..| ++ ...+.||-+++|.||+
T Consensus 155 Ly~~A~~~g~lVlgTgn~sE----~~~-------Gy~TkyG--------------------D~-~~di~Pl~dl~Kt~Vr 202 (279)
T 3q4g_A 155 QYEIAGYVGGLVLGTDHSAE----NIT-------GFYTKFG--------------------DG-ACDLAPLFGLNKRQVR 202 (279)
T ss_dssp HHHHHHHHTEEEBCCCCHHH----HHH-------TCSCTTT--------------------TT-CCSBCTTTTCCHHHHH
T ss_pred HHHHHHHCCCEEecCccHHh----hhc-------cchhhcC--------------------Cc-ccceeecCCCcHHHHH
Confidence 99999999985555554433 221 2111000 11 1247899999999999
Q ss_pred HHHHhCCCc--eeeCCCCCC
Q 005288 263 KICQGGNRD--WVEDPTNRS 280 (704)
Q Consensus 263 ~y~~~~gLp--~veDpSN~d 280 (704)
++++.+|+| .++.|...+
T Consensus 203 ~LA~~lgiP~~i~~K~PSa~ 222 (279)
T 3q4g_A 203 LLAKTLGAPEQLVYKTPTAD 222 (279)
T ss_dssp HHHHHTTCCHHHHTCCCSCC
T ss_pred HHHHHhCCcHHHhcCCCCCC
Confidence 999999998 455555555
No 34
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=99.24 E-value=1.7e-11 Score=139.79 Aligned_cols=161 Identities=14% Similarity=0.152 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHcC-CCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHH
Q 005288 63 MTKYREAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141 (704)
Q Consensus 63 ~~~~~e~f~~~i~~~~-l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae 141 (704)
.+++.+.+...+++.. -...++|+||+|||+||+++++|+.+.. | ..++++++++++. .+..|.+
T Consensus 306 ~~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la~~al--G----------~~~v~~v~m~~~~--~~~~~~~ 371 (590)
T 3n05_A 306 DEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDAL--G----------AQNVYGVSMPSKY--SSDHSKG 371 (590)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHHHHHH--C----------GGGEEEEECCCSS--CCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHHHHHh--C----------cccEEEEEECCCC--CCHHHHH
Confidence 4555555544444432 1234689999999999999999987642 1 0378999999886 4678899
Q ss_pred HHHHHHHhcCCeEEEEEccccCCC-----CCCC-ChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhcc
Q 005288 142 IVSHRVSDMGIRCEIVRCDWLDGR-----PKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRN 215 (704)
Q Consensus 142 ~V~kl~~~LGIp~~Iv~~~~~~~~-----~~~g-niEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RG 215 (704)
.++++|+.+|+++++++++..+.. .... ..+....++|..++..+|.+.|+.+|.|| |+++.+ .|
T Consensus 372 ~A~~la~~lgi~~~~i~i~~~~~~~~~~l~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~TG-n~se~~--------~G 442 (590)
T 3n05_A 372 DAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPG-NKSELA--------VG 442 (590)
T ss_dssp HHHHHHHHHTCEEEECCSHHHHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHHTCEEBCCC-CHHHHH--------HT
T ss_pred HHHHHHHHcCCcEEEEEChHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHhcCCEEEeCC-CHHHHh--------cC
Confidence 999999999999999887643210 0001 12334456788899999999999999999 555532 11
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCC
Q 005288 216 SGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGN 269 (704)
Q Consensus 216 sGl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~g 269 (704)
.... . ......+.||.+++|.||+++++.+|
T Consensus 443 y~t~--~---------------------gd~~~~~~Pl~~l~K~eVr~la~~lg 473 (590)
T 3n05_A 443 YSTL--Y---------------------GDSVGAYGPIKDVYKTSIFRLAEWRN 473 (590)
T ss_dssp CCCS--S---------------------CTTSCSBCTTTTSCHHHHHHHHHHHH
T ss_pred chhh--c---------------------CCCccceeecCCCcHHHHHHHHHHhC
Confidence 1100 0 01123678999999999999999987
No 35
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=99.17 E-value=1.2e-10 Score=122.04 Aligned_cols=184 Identities=15% Similarity=0.045 Sum_probs=113.7
Q ss_pred hhccccCCcCCccCCHHHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhC-CCCCCCCCCCCCCcEEEE
Q 005288 48 FCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGLLAI 126 (704)
Q Consensus 48 ~c~~~~~w~~~~~~~~~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~-g~~~~~~~~gi~~~L~AV 126 (704)
-++..+.+. ..-.++.....++.++.+.++ ++++||+|||+||+++++|++..... |. .+...+++++
T Consensus 17 ~~~~~~~~~--~~~~i~~~v~~L~d~l~~~g~---~~vvvglSGGiDSal~a~La~~A~daLG~------~~~~~~viav 85 (285)
T 3dpi_A 17 ELHVSPTFD--ARDEAERRIGFVADYLRTAGL---RACVLGISGGIDSSTAGRLAQLAVERLRA------SGYDARFVAM 85 (285)
T ss_dssp HTTCCSSCC--HHHHHHHHHHHHHHHHHHHTC---CEEEEECCSSHHHHHHHHHHHHHHHHHHH------TTCCCEEEEE
T ss_pred HhCCCCCCC--HHHHHHHHHHHHHHHHHHcCC---CcEEEEccCChhHHHHHHHHHHHHHHhcc------cCcccEEEEE
Confidence 355554333 222344444455666666543 68999999999999999887654211 10 0111257888
Q ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccccCC----------CCCCC------ChHHHHHHHHHHHHHHHHHH
Q 005288 127 TVDHGLREESKEEANIVSHRVSDMG-IRCEIVRCDWLDG----------RPKQG------HLQEAARDMRYRLFQKVCIQ 189 (704)
Q Consensus 127 hVDHGLR~eS~~Eae~V~kl~~~LG-Ip~~Iv~~~~~~~----------~~~~g------niEe~AR~~RY~~L~~~A~e 189 (704)
+..++- ..+.+.+++.|+.+| ++++++++...+. ....+ ..+....++|...+..+|.+
T Consensus 86 ~~p~~~----~~~~~dA~~~a~~lg~i~~~~i~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~NiqaR~Rm~~L~~~A~~ 161 (285)
T 3dpi_A 86 RLPYGA----QHDEADARRALAFVRADETLTVDVKPAADAMLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAGA 161 (285)
T ss_dssp ECCSCC-------CHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCC----HHHHHHHHHHHHHcCCCcEEEEEChHHHHHHHHHHHhcCccccccCCCchhhhhHHHHHHHHHHHHHHHH
Confidence 888763 335566788899999 7999988754211 00000 12344567899999999999
Q ss_pred cCCCEeecccccchhHHHHHHHHhccCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCC
Q 005288 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGN 269 (704)
Q Consensus 190 ~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~g 269 (704)
+|+-+|.|||-.+...-.+ ...|. +...+.||.+++|.||+++++.+|
T Consensus 162 ~g~lVlgTgn~sE~~~Gy~---T~~GD-----------------------------~~~~~~Pl~~l~K~eV~~la~~lg 209 (285)
T 3dpi_A 162 RNGVVIGTDHAAESVMGFF---TKFGD-----------------------------GGADVLPLAGLTKRRVRALARMLG 209 (285)
T ss_dssp TTEEEBCCCCHHHHHHHHH---HCCCC-----------------------------CCCSBCTTTTCCHHHHHHHHHHTT
T ss_pred CCCEEEeCccHHhhhCCcc---cccCC-----------------------------CceeEeeecCCcHHHHHHHHHHcC
Confidence 9886666655444321111 11111 112589999999999999999999
Q ss_pred Cce--eeCCCC
Q 005288 270 RDW--VEDPTN 278 (704)
Q Consensus 270 Lp~--veDpSN 278 (704)
+|. ++.|..
T Consensus 210 ~p~~i~~k~pS 220 (285)
T 3dpi_A 210 ADEPLVLKTPT 220 (285)
T ss_dssp CCHHHHTCCCH
T ss_pred CCHHHhcCCCC
Confidence 983 444443
No 36
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=98.76 E-value=2.2e-08 Score=116.09 Aligned_cols=156 Identities=14% Similarity=0.122 Sum_probs=96.3
Q ss_pred HHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhC-CCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHH
Q 005288 70 FSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVS 148 (704)
Q Consensus 70 f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~-g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~ 148 (704)
++.++++.+ .++|+||+|||+||++++.++++.... |. -..++++++++... .+.++.+.++++|+
T Consensus 352 l~~~l~~~g---~~~vvvglSGGvDSsvaa~l~~~a~~~lg~--------~~~~v~~v~m~~~~--~~~~~~~~A~~la~ 418 (680)
T 3sdb_A 352 LEQRLRALD---YPKVVIGVSGGLDSTHALIVATHAMDREGR--------PRSDILAFALPGFA--TGEHTKNNAIKLAR 418 (680)
T ss_dssp HHHHHHHTT---SCEEEEECCSSHHHHHHHHHHHHHHHHTTC--------CGGGEEEEECCC----------CHHHHHHH
T ss_pred HHHHHHHcC---CCcEEEEecCCccHHHHHHHHHHHHHHhCC--------CCceEEEEEECCCC--CCHHHHHHHHHHHH
Confidence 344454432 368999999999999988887765321 11 01478999999765 34567778899999
Q ss_pred hcCCeEEEEEccccCC-------CCCC-C------ChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhc
Q 005288 149 DMGIRCEIVRCDWLDG-------RPKQ-G------HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSR 214 (704)
Q Consensus 149 ~LGIp~~Iv~~~~~~~-------~~~~-g------niEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~R 214 (704)
.+|+++++++++..+. .+.. + ..+....++|...+..+|.+.|+.+|.||| ..|..+
T Consensus 419 ~lgi~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~A~~~g~lvlgTgn----~sE~~~----- 489 (680)
T 3sdb_A 419 ALGVTFSEIDIGDTARLMLHTIGHPYSVGEKVYDVTFENVQAGLRTDYLFRIANQRGGIVLGTGD----LSELAL----- 489 (680)
T ss_dssp HHTCEEEECCCHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHTEEEEECCC----HHHHHH-----
T ss_pred HcCCCEEEEECHHHHHHHHHHhchhhcCCCCCcchhHHHhhHHHHHHHHHHHHHHcCCEEEeCCc----HHhHhc-----
Confidence 9999999988764210 0000 1 123444567888899999999886666653 334332
Q ss_pred cCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCC
Q 005288 215 NSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGN 269 (704)
Q Consensus 215 GsGl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~g 269 (704)
|- ..+.. .+ ....+.||.+++|.||+++++.++
T Consensus 490 Gy-----~T~~~----------------gD-~~~~~~Pl~~l~K~eVr~lar~l~ 522 (680)
T 3sdb_A 490 GW-----STYGV----------------GD-QMSHYNVNAGVPKTLIQHLIRWVI 522 (680)
T ss_dssp TC-----SCCSS----------------ST-TCCSEETTTTSCHHHHHHHHHHHH
T ss_pred Ce-----eeccC----------------CC-ccccccccCCCcHHHHHHHHHHHH
Confidence 21 11110 00 011368999999999999998763
No 37
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=98.75 E-value=2.6e-08 Score=114.63 Aligned_cols=173 Identities=16% Similarity=0.047 Sum_probs=102.5
Q ss_pred HHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHh-----hhhCCCCCCC------CCCCCCC----------------cE
Q 005288 71 SRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAG-----WKTGGFNQNG------EAGEFID----------------GL 123 (704)
Q Consensus 71 ~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~-----~~~~g~~~~~------~~~gi~~----------------~L 123 (704)
..++++. ..++|+||+|||+||+++|.|+.. ....|...+. ....+.. -+
T Consensus 295 ~d~~~~~---g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (634)
T 3ilv_A 295 FDYMRKS---RSKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQAKKITAVFL 371 (634)
T ss_dssp HHHHHHT---TCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCGGGCCSSCSSCTTSHHHHHHHHHHHE
T ss_pred HHHHHHh---CCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhCchhhhhhhhcccccccccccccccccchhHhhhhee
Confidence 4445553 346899999999999998887431 1111210000 0000000 07
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccCC-----------CC---CCC--ChHHHHHHHHHHHHHHHH
Q 005288 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG-----------RP---KQG--HLQEAARDMRYRLFQKVC 187 (704)
Q Consensus 124 ~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~-----------~~---~~g--niEe~AR~~RY~~L~~~A 187 (704)
++|++.... .+..+.+.++++|+.+|+++++++++..+. .+ ... ..+....++|...+..+|
T Consensus 372 ~~v~m~~~~--ss~~~~~dA~~la~~LGi~~~~IdI~~~~~~~~~~~~~~~g~~p~~~~~~~~~~N~qaR~R~~~l~~~A 449 (634)
T 3ilv_A 372 TTAYQSTRN--SGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWEKDDITLQNIQARGRAPIIWMLT 449 (634)
T ss_dssp EEEEEECTT--CCSHHHHHHHHHHHHHTCEEEEEECHHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHTTHHHHHHHH
T ss_pred eeeecCCCC--CCHHHHHHHHHHHHHhCCcEEEEccHHHHHHHHHHHHHhhCCCcccccCcchhhhhhHHHHHHHHHHHH
Confidence 888887433 455677788899999999999998764221 10 001 123444567888899999
Q ss_pred HHcCCCEeecccccchhHHHHHHHHhccCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHh
Q 005288 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQG 267 (704)
Q Consensus 188 ~e~G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~ 267 (704)
.+.|+.+|.||| ..|.. .|.. .+.. +. ...+.||.+++|+||+++++.
T Consensus 450 ~~~g~lvlgTgn----ksE~~-----~Gy~-----T~yg-----------------D~-~~~~~Pl~~l~KteVr~la~~ 497 (634)
T 3ilv_A 450 NVKQALLITTSN----RSEGD-----VGYA-----TMDG-----------------DT-AGGIAPIAGVDKDFIRSWLRW 497 (634)
T ss_dssp HHHTCEEBCCCC----HHHHH-----TTCS-----CTTT-----------------TT-CSSBBTTTTSCHHHHHHHHHH
T ss_pred HhcCCEEeccCc----hhhHh-----hCCc-----cccC-----------------Cc-ccCCcccCCCcHHHHHHHHHH
Confidence 999998887775 33432 2211 1110 00 124689999999999999999
Q ss_pred C----CCc----eeeCCCCCC
Q 005288 268 G----NRD----WVEDPTNRS 280 (704)
Q Consensus 268 ~----gLp----~veDpSN~d 280 (704)
+ |+| .++.|...+
T Consensus 498 l~~~~glp~l~~i~~k~pSae 518 (634)
T 3ilv_A 498 AEKNRNQHGLHIVNKLAPTAE 518 (634)
T ss_dssp HHHHSCCGGGSSCC-------
T ss_pred HHHcCCCchHHHHcCCCCCcC
Confidence 8 898 554444333
No 38
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=98.54 E-value=1.2e-06 Score=92.74 Aligned_cols=150 Identities=15% Similarity=0.169 Sum_probs=94.4
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCC------C-CCCCCCCCC-CCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeE
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGG------F-NQNGEAGEF-IDGLLAITVDHGLREESKEEANIVSHRVSDMGIRC 154 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g------~-~~~~~~~gi-~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~ 154 (704)
+++++++|||+||+||++|+.+..... . ....+..+. ...+-++|||.|. .-++-.+++.++++++|+++
T Consensus 59 ~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~--~FpET~ef~d~~~~~ygL~L 136 (308)
T 3fwk_A 59 GEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDD--TFKTLENFIEETSLRYSLSL 136 (308)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTT--CCHHHHHHHHHHHHHTTEEE
T ss_pred CCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCC--CCHHHHHHHHHHHHHhCCcE
Confidence 679999999999999999987753110 0 000000000 1256789999997 56778899999999999988
Q ss_pred EEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHc-CCCEeecccccchhHHHHHHHHhccCCCCCccccccccccccc
Q 005288 155 EIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQH-QIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSS 233 (704)
Q Consensus 155 ~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~-G~~~LatGHhaDDqaET~LmrL~RGsGl~GLaGm~~~~~vf~~ 233 (704)
++...+. ..... +.+.++.+.. +++.+++|--.+| . + |. .++....
T Consensus 137 ~v~~p~~------~~~~~--------~~cc~~~K~~P~~~AwitG~RR~e-~-~------Ra-------~l~~~e~---- 183 (308)
T 3fwk_A 137 YESDRDK------CETMA--------EAFETFLQVFPETKAIVIGIRHTD-P-F------GE-------HLKPIQK---- 183 (308)
T ss_dssp EECCTTS------CCCHH--------HHHHHHHHHCTTCCEEECCCCTTS-T-T------CT-------TCCSEEE----
T ss_pred EEeCCCC------CHHHH--------HHHHHHHHhCCCCCEEEEEeecCC-c-c------cC-------CCCeeec----
Confidence 7654321 11122 2344444555 6889999988775 1 1 11 1221100
Q ss_pred ccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005288 234 YAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (704)
Q Consensus 234 ~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (704)
....-.++.-+.||++++..||.+|..+++|||.
T Consensus 184 ------~d~~w~~~iKVnPL~dWT~~DVW~YI~~~~LPyn 217 (308)
T 3fwk_A 184 ------TDANWPDFYRLQPLLHWNLANIWSFLLYSNEPIC 217 (308)
T ss_dssp ------CCTTSCSCEEECTTTTCCHHHHHHHHHHHTCCCC
T ss_pred ------cCCCCCCeEEEechhhCCHHHHHHHHHHcCCCCC
Confidence 0000124556799999999999999999999984
No 39
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=98.50 E-value=3.6e-07 Score=93.45 Aligned_cols=140 Identities=14% Similarity=0.027 Sum_probs=91.6
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCc----HHHHHHHHHHHHhcCCeEEEEE
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES----KEEANIVSHRVSDMGIRCEIVR 158 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS----~~Eae~V~kl~~~LGIp~~Iv~ 158 (704)
-|+++++|||+||+++++++.+. | .++.+++..++.+..+ ..+.+.+++.|+.+|||+++++
T Consensus 5 MKvvvl~SGGkDSs~al~~l~~~---G-----------~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~ 70 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAIKN---R-----------FSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGF 70 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHT---T-----------CEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEecCcHHHHHHHHHHHHc---C-----------CeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEE
Confidence 48999999999999999988642 3 3788888777654221 1234567888999999999998
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccc-hhHHHHHHHHhccCCCCCccccccccccccccccc
Q 005288 159 CDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD-DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237 (704)
Q Consensus 159 ~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaD-DqaET~LmrL~RGsGl~GLaGm~~~~~vf~~~~~~ 237 (704)
+.+.. ..-.+ -|.+..++.|++.+++|--.. +|. +..-+.+.
T Consensus 71 ~~g~~----~~e~e---------~l~~~l~~~~i~~vv~Gdi~s~yqr-~r~e~vc~----------------------- 113 (237)
T 3rjz_A 71 TQGEK----EKEVE---------DLKRVLSGLKIQGIVAGALASKYQR-KRIEKVAK----------------------- 113 (237)
T ss_dssp C----------CHH---------HHHHHHTTSCCSEEECC---CCSHH-HHHHHHHH-----------------------
T ss_pred CCCCc----hHHHH---------HHHHHHHhcCCcEEEECCcchHHHH-HHHHHHHH-----------------------
Confidence 75421 00112 233444555999999998764 343 22222222
Q ss_pred ccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCC
Q 005288 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNR 279 (704)
Q Consensus 238 ~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~ 279 (704)
+-++..+-||...+..++..-.-+.|+..+.-..+.
T Consensus 114 ------~~gl~~~~PLW~~d~~~Ll~e~i~~G~~aiiv~v~~ 149 (237)
T 3rjz_A 114 ------ELGLEVYTPAWGRDAKEYMRELLNLGFKIMVVGVSA 149 (237)
T ss_dssp ------HTTCEEECSSSSCCHHHHHHHHHHTTCEEEEEEEES
T ss_pred ------HcCCEEEccccCCCHHHHHHHHHHCCCEEEEEEEec
Confidence 234668899999999999988889999888765553
No 40
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=98.20 E-value=8.3e-06 Score=92.46 Aligned_cols=139 Identities=14% Similarity=0.152 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHH
Q 005288 61 TDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140 (704)
Q Consensus 61 ~~~~~~~e~f~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Ea 140 (704)
...+++++.+.+.++... ....+|++++|||+||++++.++++..............+..++.++++... .+ .|.
T Consensus 206 ~~~~~lr~~L~~aV~~rl-~sdvpvgv~LSGGlDSS~iaala~~~~~~~~~~~~~~~a~~~~l~tfsig~~---~~-~E~ 280 (553)
T 1ct9_A 206 TDKNELRQALEDSVKSHL-MSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLP---GS-PDL 280 (553)
T ss_dssp CCHHHHHHHHHHHHHHHT-CCSSCEEEECCSSHHHHHHHHHHHHHC----------------CEEEEEEST---TC-HHH
T ss_pred HHHHHHHHHHHHHHHHHh-cCCCceEEeCCCCccHHHHHHHHHHhhccccccccccccccCceeEEEecCC---CC-cHH
Confidence 346677777777776643 3456899999999999999999876532100000000000012567777653 22 588
Q ss_pred HHHHHHHHhcCCeEEEEEccccCCCC---------CCCCh-HHHHHHHHHHHHHHHHHHcCCCEeecccccchhH
Q 005288 141 NIVSHRVSDMGIRCEIVRCDWLDGRP---------KQGHL-QEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (704)
Q Consensus 141 e~V~kl~~~LGIp~~Iv~~~~~~~~~---------~~gni-Ee~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqa 205 (704)
..+++.|+.+|++|+++.++...... ...+. ...+.. ...++.+.+++.|+++|++||.+|++.
T Consensus 281 ~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~-~~~~l~~~a~~~g~~vvLsG~GaDElf 354 (553)
T 1ct9_A 281 KAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRAST-PMYLMSRKIKAMGIKMVLSGEGSDEVF 354 (553)
T ss_dssp HHHHHHHHHHTCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHTTCCEEECCTTHHHHH
T ss_pred HHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHHHhcCCCcccchHHH-HHHHHHHHHHHcCCeEEEECCCchhcc
Confidence 89999999999999998875421100 01111 111222 223567788899999999999999864
No 41
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=98.17 E-value=4.8e-06 Score=93.63 Aligned_cols=125 Identities=13% Similarity=0.036 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHHHc---CCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHH
Q 005288 62 DMTKYREAFSRRMAMA---GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138 (704)
Q Consensus 62 ~~~~~~e~f~~~i~~~---~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~ 138 (704)
+.++..+++++.+.++ .+..+.+|++++|||+||++++.++++.. . ++.++++.+.- ..
T Consensus 218 ~~~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGlDSS~vaala~~~~-~-------------~v~tfti~~~~----~~ 279 (513)
T 1jgt_A 218 PEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACAHRAA-G-------------ELDTVSMGTDT----SN 279 (513)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHHHHHHH-S-------------SCEEEEEECSS----CC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcHHHHHHHHHHHHhC-C-------------CceEEEcCCCC----CC
Confidence 4555555555544432 23445789999999999999999987652 1 35677777642 34
Q ss_pred HHHHHHHHHHhcCCeEEEEEccccCCCC---------CCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhH
Q 005288 139 EANIVSHRVSDMGIRCEIVRCDWLDGRP---------KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (704)
Q Consensus 139 Eae~V~kl~~~LGIp~~Iv~~~~~~~~~---------~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqa 205 (704)
|...++++|+.+|++++++.++...... ...++...+-.+-..++.+.+ +.|++++++||.+|+..
T Consensus 280 E~~~A~~vA~~lg~~h~~i~i~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~a-~~g~~VvltG~GaDElf 354 (513)
T 1jgt_A 280 EFREARAVVDHLRTRHREITIPTTELLAQLPYAVWASESVDPDIIEYLLPLTALYRAL-DGPERRILTGYGADIPL 354 (513)
T ss_dssp CHHHHHHHHHHHTCEEEEEECCHHHHHTTHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CSSCCEEECCTTTHHHH
T ss_pred HHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHH-HcCCCEEEeCCChhhcc
Confidence 6788899999999999999876432100 001122111111222445555 67899999999999864
No 42
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=98.14 E-value=4.5e-06 Score=93.59 Aligned_cols=125 Identities=13% Similarity=0.043 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHHHc---CCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHH
Q 005288 62 DMTKYREAFSRRMAMA---GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138 (704)
Q Consensus 62 ~~~~~~e~f~~~i~~~---~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~ 138 (704)
+.++..+++++.+.++ .+....+|++++|||+||++++.++++. + .++.++++.+.- ..
T Consensus 215 ~~~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDSs~vaala~~~---~-----------~~~~~~t~~~~~----~~ 276 (503)
T 1q15_A 215 PREPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALASRH---F-----------KKLNTYSIGTEL----SN 276 (503)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHHHHTTT---C-----------SEEEEEEEEETT----BC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHHHHHHHHHHHh---C-----------CCcEEEEEeCCC----cc
Confidence 4566666655554432 2344578999999999999999988543 1 256777877642 24
Q ss_pred HHHHHHHHHHhcCCeEEEEEccccCCCC---------CCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhH
Q 005288 139 EANIVSHRVSDMGIRCEIVRCDWLDGRP---------KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (704)
Q Consensus 139 Eae~V~kl~~~LGIp~~Iv~~~~~~~~~---------~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqa 205 (704)
|...++++|+.+|+++++++++...... ...++...+-.+...++.+.| +.|+.++++|+.+|+..
T Consensus 277 E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~a-~~~~~VvltG~GaDElf 351 (503)
T 1q15_A 277 EFEFSQQVADALGTHHQMKILSETEVINGIIESIYYNEIFDGLSAEIQSGLFNVYRQA-QGQVSCMLTGYGSDLLF 351 (503)
T ss_dssp CHHHHHHHHHHHTCEEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-BTTBSEEECCTTHHHHH
T ss_pred HHHHHHHHHHHhCCceEEEECCHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHH-HCCCCEEEeCCChhhhc
Confidence 6778899999999999998876421100 011122222222333556666 67899999999999864
No 43
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=97.67 E-value=0.00044 Score=78.64 Aligned_cols=150 Identities=15% Similarity=0.181 Sum_probs=97.8
Q ss_pred HHHHHHcCCCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhc
Q 005288 71 SRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDM 150 (704)
Q Consensus 71 ~~~i~~~~l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~L 150 (704)
+.++.+.+ -++++|++|||.||++++.++.+.... .++++++.-. +..++.....++++++.+
T Consensus 292 ~dy~~k~g---~~~~vlglSGGiDSal~~~la~~alg~------------~~v~~v~mp~--~~ts~~t~~~a~~la~~l 354 (565)
T 4f4h_A 292 RDYIGKNG---FPGAIIGLSGGVDSALVLAVAVDALGA------------ERVRAVMMPS--RYTAGISTTDAADMARRV 354 (565)
T ss_dssp HHHHHHTT---CCCEEEECCSSHHHHHHHHHHHHHHCG------------GGEEEEECCC--TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcC---CCcEEEecCCCccHHHHHHHHHHHhCC------------ccEEEEeccc--cccccchHHHHHHHHHHh
Confidence 44555543 367999999999999998887765321 2577766543 446777778889999999
Q ss_pred CCeEEEEEccccC-------CCC---CCC--ChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHHHHHhccCCC
Q 005288 151 GIRCEIVRCDWLD-------GRP---KQG--HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGV 218 (704)
Q Consensus 151 GIp~~Iv~~~~~~-------~~~---~~g--niEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~LmrL~RGsGl 218 (704)
|+.+..++++... ... ... ..|..--++|-.+|..+|.+.|.=+|-|| |..|..+ |.
T Consensus 355 g~~~~~i~i~~~~~~~~~~~~~~~~~~~~d~~~eN~qaR~R~~~l~~~an~~g~lvlgTg----n~sE~a~-------Gy 423 (565)
T 4f4h_A 355 GVRYDEIAIAPMFDAFRASLAAEFAGLAEDATEENIQARIRGTLLMALSNKFGSIVLTTG----NKSEMAV-------GY 423 (565)
T ss_dssp TCEEEECCCHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECC----CHHHHHH-------TC
T ss_pred CCceeeeecchHHHHHHHHhhhcccCccchhhHhhhcchhhHHHHHHHHhhcCCcccCCC----chhhHhh-------cc
Confidence 9999988775211 000 111 13334446778889999999987555555 4555322 21
Q ss_pred CCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCC
Q 005288 219 LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGN 269 (704)
Q Consensus 219 ~GLaGm~~~~~vf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~g 269 (704)
..+- .++ .--+-|+-+++|.+|+.+++..+
T Consensus 424 ---~T~~-----------------Gd~-~~~~~pi~~l~Kt~v~~l~~~~~ 453 (565)
T 4f4h_A 424 ---CTLY-----------------GDM-AGGFAVIKDIAKTLVYRLCRYRN 453 (565)
T ss_dssp ---SCTT-----------------TTT-CSSEETTTTCCHHHHHHHHHHHH
T ss_pred ---cccc-----------------CCc-ccCchhccCccHHHHHHHHHHHh
Confidence 1111 011 11367999999999999998644
No 44
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=92.52 E-value=0.43 Score=42.45 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=59.7
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCC------------------CC----CcHHHH
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL------------------RE----ESKEEA 140 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGL------------------R~----eS~~Ea 140 (704)
++|+|++.|...|..++.....+.+. .+.+++++||-... .. ...+..
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~----------~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 72 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQL----------TGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIA 72 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHH----------HCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHh----------cCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHH
Confidence 68999999999999888776665442 12378999986531 10 011122
Q ss_pred HHHHHHHHhcCCeE---EEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccc
Q 005288 141 NIVSHRVSDMGIRC---EIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (704)
Q Consensus 141 e~V~kl~~~LGIp~---~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaD 202 (704)
+.+.+.++..|+++ ...-. .|++. +.+.+.|++.++|.|++|+|..
T Consensus 73 ~~~~~~~~~~g~~~~~~~~~~~--------~g~~~--------~~I~~~a~~~~~dliV~G~~~~ 121 (147)
T 3hgm_A 73 VQAKTRATELGVPADKVRAFVK--------GGRPS--------RTIVRFARKRECDLVVIGAQGT 121 (147)
T ss_dssp HHHHHHHHHTTCCGGGEEEEEE--------ESCHH--------HHHHHHHHHTTCSEEEECSSCT
T ss_pred HHHHHHHHhcCCCccceEEEEe--------cCCHH--------HHHHHHHHHhCCCEEEEeCCCC
Confidence 33445566678776 32211 12332 2466788999999999998754
No 45
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=91.41 E-value=0.82 Score=42.07 Aligned_cols=97 Identities=9% Similarity=-0.066 Sum_probs=62.8
Q ss_pred CEEEEEEcC-ChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCC-------cHHHHHHHHHHHHhcCCeE
Q 005288 83 HRIALGVSG-GPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE-------SKEEANIVSHRVSDMGIRC 154 (704)
Q Consensus 83 ~kVlVAVSG-GvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~e-------S~~Eae~V~kl~~~LGIp~ 154 (704)
++|+|++.| ...|..++..+..+.+. .+.+++++||-...... ..+..+.+.+.++..|+++
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~la~~----------~~a~l~llhV~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~ 94 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEARL----------RGVPVYVVHSLPGGGRTKDEDIIEAKETLSWAVSIIRKEGAEG 94 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHH----------HTCCEEEEEEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHHHh----------cCCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 689999999 99999888877665443 12378999986643211 1122233445566678887
Q ss_pred EEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccch
Q 005288 155 EIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (704)
Q Consensus 155 ~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDD 203 (704)
.+... . ..|++. +.+.++|++.++|.|++|.+...
T Consensus 95 ~~~~~-v-----~~G~~~--------~~I~~~a~~~~~DLIV~G~~g~~ 129 (155)
T 3dlo_A 95 EEHLL-V-----RGKEPP--------DDIVDFADEVDAIAIVIGIRKRS 129 (155)
T ss_dssp EEEEE-E-----SSSCHH--------HHHHHHHHHTTCSEEEEECCEEC
T ss_pred eEEEE-e-----cCCCHH--------HHHHHHHHHcCCCEEEECCCCCC
Confidence 65321 1 123332 24677899999999999987643
No 46
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=90.80 E-value=2.1 Score=39.58 Aligned_cols=102 Identities=13% Similarity=0.081 Sum_probs=63.1
Q ss_pred CCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEE--EEeC-C----------------CCCCcHHH
Q 005288 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI--TVDH-G----------------LREESKEE 139 (704)
Q Consensus 79 l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AV--hVDH-G----------------LR~eS~~E 139 (704)
....++|+|++.|...|..++..+..+.+ . +.+++++ ||-. . ++....+.
T Consensus 14 ~~~~~~ILv~vD~s~~s~~al~~A~~lA~-~----------~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (163)
T 1tq8_A 14 LSAYKTVVVGTDGSDSSMRAVDRAAQIAG-A----------DAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEI 82 (163)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHT-T----------TSEEEEEEECCC--------------------CCTHHHH
T ss_pred cccCCEEEEEcCCCHHHHHHHHHHHHHhC-C----------CCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHH
Confidence 44568999999999999988877766543 1 2368888 6521 1 11112223
Q ss_pred HHHHHHHHHhcCCe-EEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHH
Q 005288 140 ANIVSHRVSDMGIR-CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAEL 207 (704)
Q Consensus 140 ae~V~kl~~~LGIp-~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET 207 (704)
.+.+.+.++..|++ +.+.-. .|++. +.+.++|++.+++.|++|.+.....+.
T Consensus 83 l~~~~~~~~~~gv~~v~~~v~--------~G~~~--------~~I~~~a~~~~~DLIV~G~~g~~~~~~ 135 (163)
T 1tq8_A 83 LHDAKERAHNAGAKNVEERPI--------VGAPV--------DALVNLADEEKADLLVVGNVGLSTIAG 135 (163)
T ss_dssp HHHHHHHHHTTTCCEEEEEEE--------CSSHH--------HHHHHHHHHTTCSEEEEECCCCCSHHH
T ss_pred HHHHHHHHHHcCCCeEEEEEe--------cCCHH--------HHHHHHHHhcCCCEEEECCCCCCcccc
Confidence 34445556667887 554321 13332 245678899999999999986554433
No 47
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=90.78 E-value=1.2 Score=39.30 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=57.5
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhh-hCCCCCCCCCCCCCCcEEEEEEeCCCCCC------------------cHHHHHHH
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWK-TGGFNQNGEAGEFIDGLLAITVDHGLREE------------------SKEEANIV 143 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~-~~g~~~~~~~~gi~~~L~AVhVDHGLR~e------------------S~~Eae~V 143 (704)
++|+|++.|...|..++..+..+. +. .+.+++++||-...... ..+..+.+
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~----------~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKD----------ADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKF 71 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTC----------TTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccC----------CCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999888877765 32 23478999987654311 11112223
Q ss_pred HHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccch
Q 005288 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (704)
Q Consensus 144 ~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDD 203 (704)
.+.+...|+++...-. .|++. +.+.+.++ ++|.|++|+|...
T Consensus 72 ~~~~~~~g~~~~~~v~--------~g~~~--------~~I~~~a~--~~dliV~G~~~~~ 113 (138)
T 3idf_A 72 STFFTEKGINPFVVIK--------EGEPV--------EMVLEEAK--DYNLLIIGSSENS 113 (138)
T ss_dssp HHHHHTTTCCCEEEEE--------ESCHH--------HHHHHHHT--TCSEEEEECCTTS
T ss_pred HHHHHHCCCCeEEEEe--------cCChH--------HHHHHHHh--cCCEEEEeCCCcc
Confidence 3345556777654321 12222 23445565 8999999988644
No 48
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=90.53 E-value=2.5 Score=42.41 Aligned_cols=99 Identities=7% Similarity=-0.023 Sum_probs=68.3
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc
Q 005288 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCD 160 (704)
Q Consensus 81 ~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~ 160 (704)
+.++|++|+.|...|..++..+..+.+. .+.+++++||...-. ..+..+.+.+.++..|++..+.-.
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~----------~~~~l~ll~v~~~~~--~~~~l~~~~~~l~~~~~~~~~~~~- 235 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVKK----------TGGELHIIHVSEDGD--KTADLRVMEEVIGAEGIEVHVHIE- 235 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHHH----------HTCEEEEEEECSSSC--CHHHHHHHHHHHHHTTCCEEEEEE-
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhhh----------cCCEEEEEEEccCch--HHHHHHHHHHHHHHcCCcEEEEEe-
Confidence 4579999999999999888776665432 123789999876432 455566677788888998654321
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHH
Q 005288 161 WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAEL 207 (704)
Q Consensus 161 ~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET 207 (704)
.+++. +.+.+++++.+++.|++|.+...-.+.
T Consensus 236 -------~g~~~--------~~I~~~a~~~~~dLlV~G~~~~~~~~~ 267 (294)
T 3loq_A 236 -------SGTPH--------KAILAKREEINATTIFMGSRGAGSVMT 267 (294)
T ss_dssp -------CSCHH--------HHHHHHHHHTTCSEEEEECCCCSCHHH
T ss_pred -------cCCHH--------HHHHHHHHhcCcCEEEEeCCCCCCccc
Confidence 12332 246678899999999999886554433
No 49
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=89.75 E-value=0.17 Score=44.97 Aligned_cols=96 Identities=9% Similarity=0.013 Sum_probs=57.3
Q ss_pred CEEEEEEcCChh--HHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCC-------------C----cHHHHHHH
Q 005288 83 HRIALGVSGGPD--SMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-------------E----SKEEANIV 143 (704)
Q Consensus 83 ~kVlVAVSGGvD--SmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~-------------e----S~~Eae~V 143 (704)
++|+|++.|... |..++..+..+.+. .+.+++++||-..... . ..+..+.+
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~----------~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 71 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARI----------DDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQL 71 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHH----------HTCEEEEEEEECC----------------CHHHHHHHHHHHH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHh----------cCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHH
Confidence 689999999999 88777766555432 1237899998654210 0 11122345
Q ss_pred HHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeeccccc
Q 005288 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (704)
Q Consensus 144 ~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHha 201 (704)
+++++++|++...+..... .|++. +.+.+++++.++|.|++|+|.
T Consensus 72 ~~~~~~~~~~~~~v~~~~~-----~g~~~--------~~I~~~a~~~~~dliV~G~~~ 116 (143)
T 3fdx_A 72 KEIAKKFSIPEDRMHFHVA-----EGSPK--------DKILALAKSLPADLVIIASHR 116 (143)
T ss_dssp HHHHTTSCCCGGGEEEEEE-----ESCHH--------HHHHHHHHHTTCSEEEEESSC
T ss_pred HHHHHHcCCCCCceEEEEE-----ecChH--------HHHHHHHHHhCCCEEEEeCCC
Confidence 5566677764211111111 12332 246678999999999999984
No 50
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=89.59 E-value=0.65 Score=41.32 Aligned_cols=96 Identities=10% Similarity=0.061 Sum_probs=57.5
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCC------------------cHHHHHHH
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE------------------SKEEANIV 143 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~e------------------S~~Eae~V 143 (704)
-++|+|++.|...|..++..+..+.+. .+.+++++||-...... ..+..+.+
T Consensus 5 ~~~ILv~~D~s~~s~~al~~A~~la~~----------~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 74 (146)
T 3s3t_A 5 YTNILVPVDSSDAAQAAFTEAVNIAQR----------HQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQR 74 (146)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHH----------HTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEcCCCHHHHHHHHHHHHHHHh----------cCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 378999999999999888776665442 12378899985432100 01111223
Q ss_pred HHHHHhcCC-eEEEEEccccCCCCCCCChHHHHHHHHHHHHHH-HHHHcCCCEeecccccch
Q 005288 144 SHRVSDMGI-RCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQK-VCIQHQIGVLLIAHHADD 203 (704)
Q Consensus 144 ~kl~~~LGI-p~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~-~A~e~G~~~LatGHhaDD 203 (704)
.+.+...|+ ++...-. .|++. +.+.+ .|++.++|.|++|+|...
T Consensus 75 ~~~~~~~g~~~~~~~~~--------~g~~~--------~~I~~~~a~~~~~dliV~G~~~~~ 120 (146)
T 3s3t_A 75 QQFVATTSAPNLKTEIS--------YGIPK--------HTIEDYAKQHPEIDLIVLGATGTN 120 (146)
T ss_dssp HHHHTTSSCCCCEEEEE--------EECHH--------HHHHHHHHHSTTCCEEEEESCCSS
T ss_pred HHHHHhcCCcceEEEEe--------cCChH--------HHHHHHHHhhcCCCEEEECCCCCC
Confidence 333445577 5443321 12222 23455 889999999999987543
No 51
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=89.48 E-value=1.2 Score=39.32 Aligned_cols=97 Identities=19% Similarity=0.170 Sum_probs=59.8
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEe-C-C--CCC------------CcHHHHHHHHHH
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD-H-G--LRE------------ESKEEANIVSHR 146 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVD-H-G--LR~------------eS~~Eae~V~kl 146 (704)
++|+|++.|...|..++..+..+.+. .+.+++++||. . . ... ...+-.+.+.++
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~----------~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 72 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKR----------HDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDL 72 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHH----------HTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHH
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHh----------cCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHH
Confidence 68999999999999887766555432 12378899985 2 1 110 011223456667
Q ss_pred HHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhH
Q 005288 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (704)
Q Consensus 147 ~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqa 205 (704)
+++.|++....... .|++. +.+.++|++.++|.|++|+| ....
T Consensus 73 ~~~~~~~~~~~~~~-------~g~~~--------~~I~~~a~~~~~dliV~G~~-~~~~ 115 (141)
T 1jmv_A 73 AESVDYPISEKLSG-------SGDLG--------QVLSDAIEQYDVDLLVTGHH-QDFW 115 (141)
T ss_dssp HHHSSSCCCCEEEE-------EECHH--------HHHHHHHHHTTCCEEEEEEC-CCCH
T ss_pred HHHcCCCceEEEEe-------cCCHH--------HHHHHHHHhcCCCEEEEeCC-Cchh
Confidence 77788764111110 12322 23567889999999999998 5433
No 52
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=88.52 E-value=1.5 Score=39.21 Aligned_cols=99 Identities=14% Similarity=0.129 Sum_probs=58.8
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCC---------------CCc----HHHHHH
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR---------------EES----KEEANI 142 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR---------------~eS----~~Eae~ 142 (704)
-++|+|++.|...|..++..+..+.+. .+.+++++||-.... ... .+-.+.
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~----------~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQ----------IGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQK 75 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHH----------HTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhh----------cCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHH
Confidence 479999999999999888776665443 123788999854210 001 122244
Q ss_pred HHHHHHhcCCeE-EEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHH
Q 005288 143 VSHRVSDMGIRC-EIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206 (704)
Q Consensus 143 V~kl~~~LGIp~-~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaE 206 (704)
+.++++++|++. ... + ..|++. +.+.++|++.+++.|++|+|.....+
T Consensus 76 l~~~~~~~~~~~~~~~-~-------~~g~~~--------~~I~~~a~~~~~dliV~G~~~~~~~~ 124 (150)
T 3tnj_A 76 LSQIGNTLGIDPAHRW-L-------VWGEPR--------EEIIRIAEQENVDLIVVGSHGRHGLA 124 (150)
T ss_dssp HHHHHHHHTCCGGGEE-E-------EESCHH--------HHHHHHHHHTTCSEEEEEEC------
T ss_pred HHHHHHHcCCCcceEE-E-------ecCCHH--------HHHHHHHHHcCCCEEEEecCCCCCcC
Confidence 555777788763 111 1 112332 34667899999999999988655433
No 53
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=88.19 E-value=1.8 Score=38.17 Aligned_cols=94 Identities=6% Similarity=0.077 Sum_probs=55.4
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCC-CC----c--------HHHHHHHHHHHHh
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EE----S--------KEEANIVSHRVSD 149 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR-~e----S--------~~Eae~V~kl~~~ 149 (704)
++|+|++.|...|..++..+..+.+. .+.+++++||..... .. . .+..+.+.++++.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~----------~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 72 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEA----------HGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARAL 72 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHH----------HTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhh----------cCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999877766655432 123788999865211 00 0 0111223334444
Q ss_pred cCC-eEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccc
Q 005288 150 MGI-RCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (704)
Q Consensus 150 LGI-p~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaD 202 (704)
.|+ ++.+.-. .|++. +.+.++|++.++|.|++|+|..
T Consensus 73 ~g~~~~~~~~~--------~g~~~--------~~I~~~a~~~~~dliV~G~~~~ 110 (137)
T 2z08_A 73 TGVPKEDALLL--------EGVPA--------EAILQAARAEKADLIVMGTRGL 110 (137)
T ss_dssp HCCCGGGEEEE--------ESSHH--------HHHHHHHHHTTCSEEEEESSCT
T ss_pred cCCCccEEEEE--------ecCHH--------HHHHHHHHHcCCCEEEECCCCC
Confidence 676 4332211 12222 2456788999999999998853
No 54
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=88.04 E-value=2 Score=38.94 Aligned_cols=95 Identities=13% Similarity=0.182 Sum_probs=57.1
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCC----------CC-------CCc--------
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG----------LR-------EES-------- 136 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHG----------LR-------~eS-------- 136 (704)
-++|+|++.|..+|..++..+..+.+. .+.+++++||-.. +. +..
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~----------~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTL----------KAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELK 74 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCS----------SCCEEEEEEEEEGGGTC-----------------CHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhh----------cCCeEEEEEEecCccccccccccccccccccccchhhhHHHHH
Confidence 478999999999999888777665332 2347899997421 10 110
Q ss_pred -------HHHHHHHHHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccc
Q 005288 137 -------KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (704)
Q Consensus 137 -------~~Eae~V~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaD 202 (704)
.+..+.+.+.++..|+++.+.-. .|++.+ .+.++|++.+++.|++|+|..
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~--------~G~~~~--------~I~~~a~~~~~dlIV~G~~g~ 131 (162)
T 1mjh_A 75 NKLTEEAKNKMENIKKELEDVGFKVKDIIV--------VGIPHE--------EIVKIAEDEGVDIIIMGSHGK 131 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEEEE--------EECHHH--------HHHHHHHHTTCSEEEEESCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceEEEEc--------CCCHHH--------HHHHHHHHcCCCEEEEcCCCC
Confidence 00011222234456887654321 123322 356788999999999998753
No 55
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=86.68 E-value=2.5 Score=38.76 Aligned_cols=96 Identities=7% Similarity=0.014 Sum_probs=57.4
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCC--------C-----------Cc----HH
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR--------E-----------ES----KE 138 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR--------~-----------eS----~~ 138 (704)
-++|+|++.|..+|..++..+..+.+. .+.+++++||-.... + +- .+
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~----------~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKM----------EVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKE 74 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCS----------CCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHh----------cCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHH
Confidence 378999999999999888776665332 234789998743110 0 00 01
Q ss_pred ----HHHHHHHHHHhcCCeEEE--EEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccch
Q 005288 139 ----EANIVSHRVSDMGIRCEI--VRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (704)
Q Consensus 139 ----Eae~V~kl~~~LGIp~~I--v~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDD 203 (704)
..+.+.+.++..|+++.. .-. .|++. +.+.++|++.+++.|++|+|...
T Consensus 75 ~~~~~l~~~~~~~~~~g~~~~~~~~~~--------~g~~~--------~~I~~~a~~~~~DlIV~G~~g~~ 129 (170)
T 2dum_A 75 EASRKLQEKAEEVKRAFRAKNVRTIIR--------FGIPW--------DEIVKVAEEENVSLIILPSRGKL 129 (170)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEEE--------EECHH--------HHHHHHHHHTTCSEEEEESCCCC
T ss_pred HHHHHHHHHHHHHHHcCCceeeeeEEe--------cCChH--------HHHHHHHHHcCCCEEEECCCCCC
Confidence 112222334455777654 211 12222 24567889999999999988543
No 56
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=86.39 E-value=3.9 Score=36.82 Aligned_cols=97 Identities=11% Similarity=0.066 Sum_probs=58.7
Q ss_pred CCEEEEEEc--CChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCC----------------CcHHHHHHH
Q 005288 82 HHRIALGVS--GGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE----------------ESKEEANIV 143 (704)
Q Consensus 82 ~~kVlVAVS--GGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~----------------eS~~Eae~V 143 (704)
-++|+|++. |..+|..++..+..+.+. .+.+++++||-..... +..+..+.+
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~----------~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHD----------YDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEY 84 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHH----------HTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHh----------cCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHH
Confidence 478999999 999999888776665443 1237899998653210 011112223
Q ss_pred HHHHHhcCCe-EEEEEccccCCCCCCCChHHHHHHHHHHHHHHH-HHHcCCCEeecccccch
Q 005288 144 SHRVSDMGIR-CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV-CIQHQIGVLLIAHHADD 203 (704)
Q Consensus 144 ~kl~~~LGIp-~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~-A~e~G~~~LatGHhaDD 203 (704)
.+.++..|++ +...-.. .|++. +.+.+. |++.++|.|++|+|...
T Consensus 85 ~~~~~~~g~~~~~~~v~~-------~g~~~--------~~I~~~~a~~~~~DlIV~G~~g~~ 131 (156)
T 3fg9_A 85 VQLAEQRGVNQVEPLVYE-------GGDVD--------DVILEQVIPEFKPDLLVTGADTEF 131 (156)
T ss_dssp HHHHHHHTCSSEEEEEEE-------CSCHH--------HHHHHTHHHHHCCSEEEEETTCCC
T ss_pred HHHHHHcCCCceEEEEEe-------CCCHH--------HHHHHHHHHhcCCCEEEECCCCCC
Confidence 3345667884 5433211 13332 235566 88999999999998654
No 57
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=80.97 E-value=21 Score=37.09 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=72.7
Q ss_pred ccCCHHHHHHHHHHHHHHcC-------CCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCC
Q 005288 59 YLTDMTKYREAFSRRMAMAG-------LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG 131 (704)
Q Consensus 59 ~~~~~~~~~e~f~~~i~~~~-------l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHG 131 (704)
...+.+++.+.|.+.-.+.+ -....||+|-+||+. ..|-.|+..+.. | .++.++.+|.-||.
T Consensus 60 ~~~~~~~L~~~f~~la~~l~m~~~l~~~~~~~ri~vl~Sg~g--~~l~~ll~~~~~-g--------~l~~~i~~Visn~~ 128 (286)
T 3n0v_A 60 DDFDEAGFRAGLAERSEAFGMAFELTAPNHRPKVVIMVSKAD--HCLNDLLYRQRI-G--------QLGMDVVAVVSNHP 128 (286)
T ss_dssp SSCCHHHHHHHHHHHHGGGTCEEEEECTTCCCEEEEEESSCC--HHHHHHHHHHHT-T--------SSCCEEEEEEESSS
T ss_pred CCCCHHHHHHHHHHHHHHcCCEEEeecCCCCcEEEEEEeCCC--CCHHHHHHHHHC-C--------CCCcEEEEEEeCcH
Confidence 45678888888876444321 234568999999985 466666665533 2 13347888888874
Q ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHH
Q 005288 132 LREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI 209 (704)
Q Consensus 132 LR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~L 209 (704)
. ++.+|+++|||++.++.. ..+-++ --..+.+..++.+.|.++++....=.-+.++
T Consensus 129 ---~-------~~~~A~~~gIp~~~~~~~-------~~~r~~-----~~~~~~~~l~~~~~Dlivla~y~~il~~~~l 184 (286)
T 3n0v_A 129 ---D-------LEPLAHWHKIPYYHFALD-------PKDKPG-----QERKVLQVIEETGAELVILARYMQVLSPELC 184 (286)
T ss_dssp ---T-------THHHHHHTTCCEEECCCB-------TTBHHH-----HHHHHHHHHHHHTCSEEEESSCCSCCCHHHH
T ss_pred ---H-------HHHHHHHcCCCEEEeCCC-------cCCHHH-----HHHHHHHHHHhcCCCEEEecccccccCHHHH
Confidence 1 345688999999876431 011111 1123556677889999998865433333443
No 58
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=79.98 E-value=6.8 Score=39.19 Aligned_cols=95 Identities=9% Similarity=0.095 Sum_probs=65.5
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccc
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~ 161 (704)
-++|+|++.|...|..++.....+.+. .+.+++++||... .+..+..+.+.+.+...|+++...-. +
T Consensus 7 ~~~ILv~~D~s~~s~~al~~A~~la~~----------~~a~l~ll~v~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~-~ 73 (290)
T 3mt0_A 7 IRSILVVIEPDQLEGLALKRAQLIAGV----------TQSHLHLLVCEKR--RDHSAALNDLAQELREEGYSVSTNQA-W 73 (290)
T ss_dssp CCEEEEECCSSCSCCHHHHHHHHHHHH----------HCCEEEEEEECSS--SCCHHHHHHHHHHHHHTTCCEEEEEE-C
T ss_pred hceEEEEeCCCccchHHHHHHHHHHHh----------cCCeEEEEEeeCc--HHHHHHHHHHHHHHhhCCCeEEEEEE-e
Confidence 479999999999998888766655432 1237899999763 34455566666667778888765532 1
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccch
Q 005288 162 LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (704)
Q Consensus 162 ~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDD 203 (704)
.+++. +.+.+.+++.++|.|++|++...
T Consensus 74 ------~g~~~--------~~i~~~a~~~~~dliV~G~~~~~ 101 (290)
T 3mt0_A 74 ------KDSLH--------QTIIAEQQAEGCGLIIKQHFPDN 101 (290)
T ss_dssp ------SSSHH--------HHHHHHHHHHTCSEEEEECCCSC
T ss_pred ------CCCHH--------HHHHHHHHhcCCCEEEEecccCC
Confidence 12222 23566788899999999988654
No 59
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=79.68 E-value=5 Score=40.16 Aligned_cols=98 Identities=12% Similarity=0.050 Sum_probs=58.9
Q ss_pred CCCEEEEEEcCChh-------HHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCC-----------C-cHHHHH
Q 005288 81 PHHRIALGVSGGPD-------SMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-----------E-SKEEAN 141 (704)
Q Consensus 81 ~~~kVlVAVSGGvD-------SmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~-----------e-S~~Eae 141 (704)
+.++|++|+.|... |..++..+..+.+. .+.+++++||...... + ..+..+
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~----------~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGL----------AKATLHVISAHPSPMLSSADPTFQLSETIEARYRE 202 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHH----------TTCEEEEEEEEC---------CHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHH----------cCCeEEEEEEecCccccccCchhHHHHHHHHHHHH
Confidence 45899999999998 77777666555432 1237899998654210 0 011233
Q ss_pred HHHHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccch
Q 005288 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (704)
Q Consensus 142 ~V~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDD 203 (704)
.+.++++++|++.....+ ..|++. +.+.+++++.++|.|++|+|...
T Consensus 203 ~l~~~~~~~g~~~~~~~v-------~~g~~~--------~~I~~~a~~~~~dLiVmG~~g~~ 249 (290)
T 3mt0_A 203 ACRTFQAEYGFSDEQLHI-------EEGPAD--------VLIPRTAQKLDAVVTVIGTVART 249 (290)
T ss_dssp HHHHHHHHHTCCTTTEEE-------EESCHH--------HHHHHHHHHHTCSEEEEECCSSC
T ss_pred HHHHHHHHcCCCcceEEE-------eccCHH--------HHHHHHHHhcCCCEEEECCCCCc
Confidence 455577778874110000 012332 24667889999999999987543
No 60
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=78.90 E-value=13 Score=34.02 Aligned_cols=99 Identities=11% Similarity=0.117 Sum_probs=56.8
Q ss_pred CCEEEEEEcCCh---------hHHHHHHHHHhhh-hCCCCCCCCCCCCCCcEEEEEEeCC----CC---C--CcHH----
Q 005288 82 HHRIALGVSGGP---------DSMALCVLTAGWK-TGGFNQNGEAGEFIDGLLAITVDHG----LR---E--ESKE---- 138 (704)
Q Consensus 82 ~~kVlVAVSGGv---------DSmaLL~LL~~~~-~~g~~~~~~~~gi~~~L~AVhVDHG----LR---~--eS~~---- 138 (704)
.++|+|++.|.. .|..++..+..+. +.+ ..+.+++++||-.. +. . ....
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~--------~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSN--------TSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRD 76 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTC--------TTSEEEEEEEEEC----------CCCCSHHHHHH
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhccc--------CCCCEEEEEEEeecccccccccccccCCHHHHHH
Confidence 368999999999 8888777766532 210 01237889988521 10 0 0111
Q ss_pred -----------HHHHHHHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchh
Q 005288 139 -----------EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (704)
Q Consensus 139 -----------Eae~V~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDq 204 (704)
..+.+.+.+...|+++.+.-. .|++. +.+.++|++.+++.|++|+|...-
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~--------~G~~~--------~~I~~~a~~~~~DLIVmG~~g~~~ 137 (175)
T 2gm3_A 77 MRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIK--------TGDPK--------DVICQEVKRVRPDFLVVGSRGLGR 137 (175)
T ss_dssp HTTSHHHHHHHHHHHHHHHHHHHTCEEEEEEE--------ESCHH--------HHHHHHHHHHCCSEEEEEECCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCceEEEEe--------cCCHH--------HHHHHHHHHhCCCEEEEeCCCCCh
Confidence 111222234556887654321 12222 245678889999999999886543
No 61
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=75.73 E-value=37 Score=35.31 Aligned_cols=117 Identities=12% Similarity=0.119 Sum_probs=71.2
Q ss_pred cCCHHHHHHHHHHHHHHcC-------CCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCC
Q 005288 60 LTDMTKYREAFSRRMAMAG-------LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132 (704)
Q Consensus 60 ~~~~~~~~e~f~~~i~~~~-------l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGL 132 (704)
..+.+++++.|.+.-.+.+ -....||+|-+||.- +.|-.|+..+.... ++.++.+|.-||.
T Consensus 66 ~~~~~~L~~~f~~la~~~~m~~~l~~~~~~~ri~vl~Sg~g--~~l~~ll~~~~~g~---------l~~~i~~Visn~~- 133 (292)
T 3lou_A 66 ALRVDALRREFEPIAERFRMQWAIHDVAARPKVLIMVSKLE--HCLADLLFRWKMGE---------LKMDIVGIVSNHP- 133 (292)
T ss_dssp -CCHHHHHHHHHHHHHHHTCEEEEEETTSCCEEEEEECSCC--HHHHHHHHHHHHTS---------SCCEEEEEEESSS-
T ss_pred CCCHHHHHHHHHHHHHhcCcEEEeeccCCCCEEEEEEcCCC--cCHHHHHHHHHcCC---------CCcEEEEEEeCcH-
Confidence 3567888888865433321 234578999999984 46666776654322 3347888888884
Q ss_pred CCCcHHHHHHHHHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHH
Q 005288 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI 209 (704)
Q Consensus 133 R~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~L 209 (704)
. ++.+|+++|||++.++.. ..+-++ --..+.+..++++.|.++++....=.-+.++
T Consensus 134 --~-------~~~~A~~~gIp~~~~~~~-------~~~r~~-----~~~~~~~~l~~~~~Dlivla~y~~il~~~~l 189 (292)
T 3lou_A 134 --D-------FAPLAAQHGLPFRHFPIT-------ADTKAQ-----QEAQWLDVFETSGAELVILARYMQVLSPEAS 189 (292)
T ss_dssp --T-------THHHHHHTTCCEEECCCC-------SSCHHH-----HHHHHHHHHHHHTCSEEEESSCCSCCCHHHH
T ss_pred --H-------HHHHHHHcCCCEEEeCCC-------cCCHHH-----HHHHHHHHHHHhCCCEEEecCchhhCCHHHH
Confidence 2 235688999999875421 111111 1123556677889999999865433333343
No 62
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=73.27 E-value=27 Score=36.61 Aligned_cols=109 Identities=19% Similarity=0.221 Sum_probs=68.8
Q ss_pred cCCHHHHHHHHHHHHHHcC-------CCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCC
Q 005288 60 LTDMTKYREAFSRRMAMAG-------LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132 (704)
Q Consensus 60 ~~~~~~~~e~f~~~i~~~~-------l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGL 132 (704)
..+.+++++.|.+.-.+.+ -.+..||+|-+||+. | .|..|+..+.... ++.++.+|.-||.
T Consensus 76 ~~~~~~L~~~l~~la~~l~m~~~l~~~~~~~ri~vl~Sg~g-~-nl~~ll~~~~~g~---------l~~~I~~Visn~~- 143 (302)
T 3o1l_A 76 PFDLDGFREAFTPIAEEFSMDWRITDSAQKKRVVLMASRES-H-CLADLLHRWHSDE---------LDCDIACVISNHQ- 143 (302)
T ss_dssp SSCHHHHHHHHHHHHHHHTCEEEEEETTSCCEEEEEECSCC-H-HHHHHHHHHHTTC---------SCSEEEEEEESSS-
T ss_pred CCCHHHHHHHHHHHHHHhCCeeeecccCCCcEEEEEEeCCc-h-hHHHHHHHHHCCC---------CCcEEEEEEECcH-
Confidence 3578888888865433321 234578999999983 4 6666776654321 3357888888884
Q ss_pred CCCcHHHHHHHHHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeeccccc
Q 005288 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (704)
Q Consensus 133 R~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHha 201 (704)
. ++++|+++|||++..+... .+-++. -..+.+..++.+.|.|+++-..
T Consensus 144 --~-------~~~~A~~~gIp~~~~~~~~-------~~r~~~-----~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 144 --D-------LRSMVEWHDIPYYHVPVDP-------KDKEPA-----FAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp --T-------THHHHHTTTCCEEECCCCS-------SCCHHH-----HHHHHHHHHHTTCSEEEESSCC
T ss_pred --H-------HHHHHHHcCCCEEEcCCCc-------CCHHHH-----HHHHHHHHHHhCCCEEEHhHhh
Confidence 1 3467889999998764311 111111 1235566778899999988544
No 63
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=70.73 E-value=13 Score=37.43 Aligned_cols=103 Identities=11% Similarity=0.063 Sum_probs=59.4
Q ss_pred CCCEEEEEEcCChh-------HHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCC--------Cc---------
Q 005288 81 PHHRIALGVSGGPD-------SMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE--------ES--------- 136 (704)
Q Consensus 81 ~~~kVlVAVSGGvD-------SmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~--------eS--------- 136 (704)
+.++|+||+.|..+ |..++..+..+..... .+.+++++||...... ..
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~--------~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQ--------KDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALR 226 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHC--------SSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhcc--------CCCeEEEEEeecCcchhhhccCCcccHHHHHHHHH
Confidence 45899999999994 5655555544433210 0237899998653211 01
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHH
Q 005288 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206 (704)
Q Consensus 137 ~~Eae~V~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaE 206 (704)
.+-.+.+.++++++|++.....+ ..|++. +.+.+++++.+++.|++|+|..--.+
T Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~v-------~~g~~~--------~~I~~~a~~~~~dLiV~G~~g~~~~~ 281 (319)
T 3olq_A 227 GQHLIAMKELRQKFSIPEEKTHV-------KEGLPE--------QVIPQVCEELNAGIVVLGILGRTGLS 281 (319)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEE-------EESCHH--------HHHHHHHHHTTEEEEEEECCSCCSTH
T ss_pred HHHHHHHHHHHHHhCCCcccEEE-------ecCCcH--------HHHHHHHHHhCCCEEEEeccCccCCc
Confidence 01134456677888874110100 012332 34677899999999999998654443
No 64
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=64.03 E-value=22 Score=30.91 Aligned_cols=37 Identities=8% Similarity=-0.023 Sum_probs=28.3
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEe
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD 129 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVD 129 (704)
++|+|++.|...|..++.....+.+. .+.+++++||-
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~----------~~a~l~ll~v~ 41 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEK----------LGAELDILAVL 41 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTT----------TCCEEEEEEEC
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHH----------cCCeEEEEEEe
Confidence 68999999999999887776665432 23478999986
No 65
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=62.19 E-value=11 Score=37.53 Aligned_cols=99 Identities=11% Similarity=0.167 Sum_probs=59.8
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCC---------C---------CcHHHHHHH
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR---------E---------ESKEEANIV 143 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR---------~---------eS~~Eae~V 143 (704)
-++|+|++.|...|..++..+..+.+.. +.+++++||-.... . +..+..+.+
T Consensus 22 ~~~ILv~vD~s~~s~~al~~A~~lA~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (294)
T 3loq_A 22 SNAMLLPTDLSENSFKVLEYLGDFKKVG----------VEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEV 91 (294)
T ss_dssp TCEEEEECCSCTGGGGGGGGHHHHHHTT----------CCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHH
T ss_pred hccEEEecCCCHHHHHHHHHHHHHHhhc----------CCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999988877666654431 23788888643211 0 011122334
Q ss_pred HHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHH
Q 005288 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206 (704)
Q Consensus 144 ~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaE 206 (704)
.+.++..|+++....+.+ .|++.+ . + ++++.++|.|++|.+......
T Consensus 92 ~~~~~~~g~~~~~~~v~~------~g~~~~---~-----I--~a~~~~~DliV~G~~g~~~~~ 138 (294)
T 3loq_A 92 AQKIEAAGIKAEVIKPFP------AGDPVV---E-----I--IKASENYSFIAMGSRGASKFK 138 (294)
T ss_dssp HHHHHHTTCEEEECSSCC------EECHHH---H-----H--HHHHTTSSEEEEECCCCCHHH
T ss_pred HHHHHHcCCCcceeEeec------cCChhH---h-----e--eeccCCCCEEEEcCCCCcccc
Confidence 445666788876511110 233322 1 2 788999999999988665443
No 66
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=56.06 E-value=29 Score=34.79 Aligned_cols=96 Identities=11% Similarity=0.125 Sum_probs=56.7
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCC----C----CcH--------HH-HHHHHH
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR----E----ESK--------EE-ANIVSH 145 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR----~----eS~--------~E-ae~V~k 145 (704)
++|+|++.|...|..++.....+.+. .+..++++||-.... . ... ++ .+.+++
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~~----------~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQR----------NGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQ 77 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHHH----------HCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHH----------cCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHH
Confidence 78999999999998877766555432 123789999843210 0 000 00 112222
Q ss_pred ---HHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccch
Q 005288 146 ---RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (704)
Q Consensus 146 ---l~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDD 203 (704)
.+...|+++.+.-. | .+++. ..+.+.+++.++|.|++|++...
T Consensus 78 ~~~~~~~~~v~~~~~~~-~------~g~~~--------~~i~~~a~~~~~DLiV~G~~g~~ 123 (319)
T 3olq_A 78 QARYYLEAGIQIDIKVI-W------HNRPY--------EAIIEEVITDKHDLLIKMAHQHD 123 (319)
T ss_dssp HHHHHHHTTCCEEEEEE-E------CSCHH--------HHHHHHHHHHTCSEEEEEEBCC-
T ss_pred HHHHHhhcCCeEEEEEE-e------cCChH--------HHHHHHHHhcCCCEEEEecCcCc
Confidence 33346887765532 1 12222 24567788889999999998654
No 67
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=51.74 E-value=61 Score=32.94 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=68.8
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCCCEEEEEEc---CC---hhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCC
Q 005288 60 LTDMTKYREAFSRRMAMAGLKPHHRIALGVS---GG---PDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133 (704)
Q Consensus 60 ~~~~~~~~e~f~~~i~~~~l~~~~kVlVAVS---GG---vDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR 133 (704)
..+.+++...+...+.... + ++|+. |+ .|.-++-.++..+++.| .++||-+.-
T Consensus 79 ~~s~~ei~~~l~~al~~vP---~---a~GvnNHmGS~~T~~~~~m~~vm~~l~~~g---------------L~fvDS~Ts 137 (245)
T 2nly_A 79 NLSVGEVKSRVRKAFDDIP---Y---AVGLNNHMGSKIVENEKIMRAILEVVKEKN---------------AFIIDSGTS 137 (245)
T ss_dssp TCCHHHHHHHHHHHHHHST---T---CCEEEEEECTTGGGCHHHHHHHHHHHHHTT---------------CEEEECCCC
T ss_pred CCCHHHHHHHHHHHHHHCC---C---cEEEecccccchhcCHHHHHHHHHHHHHCC---------------CEEEcCCCC
Confidence 4456777777776666521 1 22222 22 36667777777776654 368999875
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccch
Q 005288 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (704)
Q Consensus 134 ~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDD 203 (704)
+.|. +.+.++++|+|+...++ +......+.+...+.+. .+...|+++| ..|++||-+.+
T Consensus 138 ~~S~-----a~~~A~~~gvp~~~rdv---FLD~~~~~~~~I~~ql~--~a~~~A~~~G-~aIaIGhp~p~ 196 (245)
T 2nly_A 138 PHSL-----IPQLAEELEVPYATRSI---FLDNTHSSRKEVIKNMR--KLAKKAKQGS-EPIGIGHVGVR 196 (245)
T ss_dssp SSCS-----HHHHHHHTTCCEEECCE---ESCCTTCCHHHHHHHHH--HHHHHHHTTS-CCEEEEECSTT
T ss_pred cccH-----HHHHHHHcCCCeEEeeE---ECCCCCCCHHHHHHHHH--HHHHHHhhcC-cEEEEECCCCC
Confidence 5543 56778899999977543 22110123444444433 3778889988 46899998887
No 68
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=51.38 E-value=48 Score=34.03 Aligned_cols=118 Identities=12% Similarity=0.078 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC---hhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcH
Q 005288 61 TDMTKYREAFSRRMAMAGLKPHHRIALGVSGG---PDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137 (704)
Q Consensus 61 ~~~~~~~e~f~~~i~~~~l~~~~kVlVAVSGG---vDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~ 137 (704)
.+.+++.+.+...+... |+-.-+-=-=|+ .|.-++-.++..++++| .++||-+.-+.|.
T Consensus 107 ~s~~ei~~~l~~al~~v---P~a~GvnNHmGS~~T~~~~~M~~vm~~L~~~g---------------L~FlDS~Ts~~S~ 168 (261)
T 2qv5_A 107 DPAKVNIDRLHRSMAKI---TNYTGVMNYLGGRFLAEQSALEPVMRDIGKRG---------------LLFLDDGSSAQSL 168 (261)
T ss_dssp SCHHHHHHHHHHHHTTC---CCCSEEEEEECTTGGGCHHHHHHHHHHHHHTT---------------CEEEECSCCTTCC
T ss_pred CCHHHHHHHHHHHHHHC---CCcEEEecccccchhcCHHHHHHHHHHHHHCC---------------CEEEcCCCCcccH
Confidence 45666666666655442 111111111133 36667777777776654 3689999865553
Q ss_pred HHHHHHHHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHH
Q 005288 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208 (704)
Q Consensus 138 ~Eae~V~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~ 208 (704)
+.+.++++|+|+...++- ... ..+.....+. .+.+.+.|+++| .+|++||-+.+-++.+
T Consensus 169 -----a~~~A~~~gvp~~~rdvF---LD~-~~~~~~I~~q--L~~a~~~Ar~~G-~AIaIGhp~p~Ti~aL 227 (261)
T 2qv5_A 169 -----SGGIAKAISAPQGFADVL---LDG-EVTEASILRK--LDDLERIARRNG-QAIGVASAFDESIAAI 227 (261)
T ss_dssp -----HHHHHHHHTCCEEECSEE---TTS-SCSHHHHHHH--HHHHHHHHHHHS-EEEEEEECCHHHHHHH
T ss_pred -----HHHHHHHcCCCeEEeeee---cCC-CCCHHHHHHH--HHHHHHHHHhcC-cEEEEeCCCHHHHHHH
Confidence 567788999999875432 111 1233333222 234678899998 5799999999866543
No 69
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=50.48 E-value=37 Score=34.03 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=29.1
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeC
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH 130 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDH 130 (704)
.++|+||+.|+..|..++..+..+... .+.+++++||..
T Consensus 171 ~~~Ilv~~D~s~~s~~al~~a~~la~~----------~~a~l~ll~v~~ 209 (309)
T 3cis_A 171 QAPVLVGVDGSSASELATAIAFDEASR----------RNVDLVALHAWS 209 (309)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHHH----------TTCCEEEEEESC
T ss_pred CCeEEEEeCCChHHHHHHHHHHHHHHh----------cCCEEEEEEEee
Confidence 468999999999998877766665432 123789999864
No 70
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=50.26 E-value=21 Score=34.87 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=26.9
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEe
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD 129 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVD 129 (704)
++|+|++.|...|..++.....+.+. .+.+++++||-
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~----------~~a~l~ll~v~ 37 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYK----------LSAPLTVLFVV 37 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHH----------HTCCEEEEEEE
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHH----------hCCcEEEEEEe
Confidence 47999999999999887766555432 12368888874
No 71
>3hj7_A TRNA(Ile)-lysidine synthase; helix-turn-helix, pseudo-knot, ATP-binding, ligase, nucleoti binding, tRNA processing; 2.20A {Geobacillus kaustophilus}
Probab=49.59 E-value=12 Score=35.06 Aligned_cols=35 Identities=26% Similarity=0.555 Sum_probs=30.6
Q ss_pred cHHHHHHHhccchhhhhhcCceEEccCcceeeeecc
Q 005288 641 SAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIPSI 676 (704)
Q Consensus 641 ~~~~~~~~l~~~p~~~r~~lpvl~~~~~~~~~~p~~ 676 (704)
+.++-+.-.| ||...|..+|||.+.+|++++||-+
T Consensus 75 kLKklf~d~k-IP~~~R~~~Pll~~~~~~IiwV~G~ 109 (142)
T 3hj7_A 75 KLKEIFIEAK-IPRMERDRWPIVEDADGRILWVPGL 109 (142)
T ss_dssp EHHHHHHHTT-CCHHHHTTCCEEECTTCCEEEETTT
T ss_pred cHHHHHHHcC-CCHHHhCCceEEEECCCeEEEEeCe
Confidence 6777888777 9999999999999988999999854
No 72
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=48.74 E-value=41 Score=34.88 Aligned_cols=117 Identities=14% Similarity=0.129 Sum_probs=70.0
Q ss_pred cCCHHHHHHHHHHHHHHcC-------CCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeC-C
Q 005288 60 LTDMTKYREAFSRRMAMAG-------LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH-G 131 (704)
Q Consensus 60 ~~~~~~~~e~f~~~i~~~~-------l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDH-G 131 (704)
..+.+++++.|...-.+.+ -....||+|-+||+- | .|-.|+..+.. | .+..++.+|.-|| .
T Consensus 60 ~~~~~~L~~~f~~la~~~~m~~~l~~~~~~~ri~vl~Sg~g-~-nl~~ll~~~~~-g--------~l~~~i~~Visn~p~ 128 (288)
T 3obi_A 60 VIPLASLRTGFGVIAAKFTMGWHMRDRETRRKVMLLVSQSD-H-CLADILYRWRV-G--------DLHMIPTAIVSNHPR 128 (288)
T ss_dssp CCCHHHHHHHHHHHHHHTTCEEEEEETTSCEEEEEEECSCC-H-HHHHHHHHHHT-T--------SSCEEEEEEEESSCG
T ss_pred CCCHHHHHHHHHHHHHHcCCEEEeeccCCCcEEEEEEcCCC-C-CHHHHHHHHHC-C--------CCCeEEEEEEcCCCh
Confidence 4678888888865443321 134568999999984 3 55556655532 2 1334788888887 2
Q ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHH
Q 005288 132 LREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI 209 (704)
Q Consensus 132 LR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~L 209 (704)
. ++++|+++|||++.++.. ..+-++ --+.+.+..++.+.|.|+++....=.-+.++
T Consensus 129 ---~-------~~~~A~~~gIp~~~~~~~-------~~~r~~-----~~~~~~~~l~~~~~Dlivlagy~~il~~~~l 184 (288)
T 3obi_A 129 ---E-------TFSGFDFGDIPFYHFPVN-------KDTRRQ-----QEAAITALIAQTHTDLVVLARYMQILSDEMS 184 (288)
T ss_dssp ---G-------GSCCTTTTTCCEEECCCC-------TTTHHH-----HHHHHHHHHHHHTCCEEEESSCCSCCCHHHH
T ss_pred ---h-------HHHHHHHcCCCEEEeCCC-------cccHHH-----HHHHHHHHHHhcCCCEEEhhhhhhhCCHHHH
Confidence 1 345678899999876421 111111 1123556677889999999865433333343
No 73
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=46.98 E-value=1.1e+02 Score=30.39 Aligned_cols=89 Identities=15% Similarity=0.056 Sum_probs=54.3
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~ 162 (704)
.||+|-+||+- | .|-.|+... +.+ .+..++.+|.-|+. .+ .+.++|+++|||+.+.+...
T Consensus 3 ~riavl~Sg~G-s-nl~ali~~~-~~~--------~l~~eI~~Visn~~---~a-----~v~~~A~~~gIp~~~~~~~~- 62 (211)
T 3p9x_A 3 KRVAIFASGSG-T-NAEAIIQSQ-KAG--------QLPCEVALLITDKP---GA-----KVVERVKVHEIPVCALDPKT- 62 (211)
T ss_dssp CEEEEECCTTC-H-HHHHHHHHH-HTT--------CCSSEEEEEEESCS---SS-----HHHHHHHTTTCCEEECCGGG-
T ss_pred CEEEEEEeCCc-h-HHHHHHHHH-HcC--------CCCcEEEEEEECCC---Cc-----HHHHHHHHcCCCEEEeChhh-
Confidence 58999999975 3 344444433 222 13347878777753 22 58899999999997764211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeeccccc
Q 005288 163 DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (704)
Q Consensus 163 ~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHha 201 (704)
. .+.++ .-..+.+..++.+.|.|+++...
T Consensus 63 -~----~~r~~-----~d~~~~~~l~~~~~Dliv~agy~ 91 (211)
T 3p9x_A 63 -Y----PSKEA-----YEIEVVQQLKEKQIDFVVLAGYM 91 (211)
T ss_dssp -S----SSHHH-----HHHHHHHHHHHTTCCEEEESSCC
T ss_pred -c----Cchhh-----hHHHHHHHHHhcCCCEEEEeCch
Confidence 0 11111 11235566778899999987644
No 74
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax}
Probab=43.54 E-value=91 Score=32.78 Aligned_cols=102 Identities=18% Similarity=0.268 Sum_probs=56.2
Q ss_pred CCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCC----CCcHHHHHHHHHHHHhcCCeE
Q 005288 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR----EESKEEANIVSHRVSDMGIRC 154 (704)
Q Consensus 79 l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR----~eS~~Eae~V~kl~~~LGIp~ 154 (704)
+..+.+..+|+|||.-=..+...|........+ | .+++.+.+|-.+- ++|-. .+.+.+....+|+-
T Consensus 56 ~~~~~~~~l~LsgGsTP~~ly~~L~~~~~~~id-------w-~~V~~f~~DEr~vp~d~~~Sn~--~~~~~l~~~v~i~~ 125 (312)
T 3e15_A 56 SKEGGHVVIGLSGGKTPIDVYKNIALVKDIKID-------T-SKLIFFIIDERYKRDDHKFSNY--NNIKFLFESLKINE 125 (312)
T ss_dssp HSTTCCCEEEECCSHHHHHHHHHHTTCCSSCCC-------G-GGCEEEESEEECCTTCCTTCHH--HHHHHHHHHTTCCH
T ss_pred hhhCCCEEEEEeCCCCHHHHHHHHHHhhccCCC-------c-cceEEEEeeeecCCCCChHHHH--HHHHHHHhcCCCCc
Confidence 455678999999997666665555432111221 2 2688888985332 23332 23456778888862
Q ss_pred --EEEEccccCCCCCCCChHHHHHHHHHHH-HHHHH-HHcCCCEeecc
Q 005288 155 --EIVRCDWLDGRPKQGHLQEAARDMRYRL-FQKVC-IQHQIGVLLIA 198 (704)
Q Consensus 155 --~Iv~~~~~~~~~~~gniEe~AR~~RY~~-L~~~A-~e~G~~~LatG 198 (704)
.+...+ ...++++.|+. |+. +.+.. ..-++|.+++|
T Consensus 126 ~~~i~~~~------g~~d~~~~a~~--Ye~~I~~~~~~~g~~DL~LLG 165 (312)
T 3e15_A 126 KEQLYRPD------TSKNIVECVRD--YNEKIKNMVKKYTKVDIAILG 165 (312)
T ss_dssp HHHEECCC------TTSCHHHHHHH--HHHHHHHHHHHHCSCCEEEEC
T ss_pred cccEEcCC------CCcCHHHHHHH--HHHHHHHHHhhcCCCcEEEEc
Confidence 222111 11356766653 432 22222 33578988887
No 75
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=41.49 E-value=46 Score=33.35 Aligned_cols=39 Identities=13% Similarity=-0.008 Sum_probs=28.3
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeC
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH 130 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDH 130 (704)
.++|+|++.|...|..++.....+.+. .+.+++++||-.
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~----------~~a~l~ll~v~~ 57 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAEL----------RKIPLTLVHAVS 57 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHH----------HTCCEEEEEECC
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHh----------cCCcEEEEEEec
Confidence 478999999999999877665554432 123788999753
No 76
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=41.22 E-value=37 Score=35.18 Aligned_cols=115 Identities=11% Similarity=0.088 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHcC-------CCCCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCC
Q 005288 63 MTKYREAFSRRMAMAG-------LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE 135 (704)
Q Consensus 63 ~~~~~e~f~~~i~~~~-------l~~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~e 135 (704)
.+++++.|.+.-.+.+ -....||+|-+||+- +.|-.|+..+.... +..++.+|.-||. .
T Consensus 62 ~~~L~~~f~~la~~~~m~~~l~~~~~~~ri~vl~Sg~g--~nl~~ll~~~~~g~---------l~~~i~~Visn~~---~ 127 (287)
T 3nrb_A 62 VNDFNSAFGKVVEKYNAEWWFRPRTDRKKVVIMVSKFD--HCLGDLLYRHRLGE---------LDMEVVGIISNHP---R 127 (287)
T ss_dssp -CHHHHHHHHHHGGGTCEEEEEETTCCCEEEEEECSCC--HHHHHHHHHHHHTS---------SCCEEEEEEESSC---G
T ss_pred HHHHHHHHHHHHHHcCCeeEeeccCCCcEEEEEEeCCC--cCHHHHHHHHHCCC---------CCeEEEEEEeCCh---H
Confidence 4577777765433321 134578999999984 45666666554321 3347888888874 1
Q ss_pred cHHHHHHHHHHHHhcCCeEEEEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHH
Q 005288 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI 209 (704)
Q Consensus 136 S~~Eae~V~kl~~~LGIp~~Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~L 209 (704)
+ +.++|+++|||++.++... .+ |..--..+.+..++.+.|.|+++....=.-+.++
T Consensus 128 ----a--~~~~A~~~gIp~~~~~~~~-------~~-----r~~~~~~~~~~l~~~~~Dlivlagym~il~~~~l 183 (287)
T 3nrb_A 128 ----E--ALSVSLVGDIPFHYLPVTP-------AT-----KAAQESQIKNIVTQSQADLIVLARYMQILSDDLS 183 (287)
T ss_dssp ----G--GCCCCCCTTSCEEECCCCG-------GG-----HHHHHHHHHHHHHHHTCSEEEESSCCSCCCHHHH
T ss_pred ----H--HHHHHHHcCCCEEEEeccC-------cc-----hhhHHHHHHHHHHHhCCCEEEhhhhhhhcCHHHH
Confidence 1 5567889999998764210 11 1111123556777889999999865433333443
No 77
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=40.37 E-value=1.7e+02 Score=28.65 Aligned_cols=89 Identities=13% Similarity=0.062 Sum_probs=52.3
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~ 162 (704)
.||+|-+||..+-+ ..++..+.... ++.++.+|.-|+- .+ .+.++|+++|||+++.+-..
T Consensus 4 ~ki~vl~sG~g~~~--~~~l~~l~~~~---------l~~~I~~Vit~~~---~~-----~v~~~A~~~gIp~~~~~~~~- 63 (212)
T 3av3_A 4 KRLAVFASGSGTNF--QAIVDAAKRGD---------LPARVALLVCDRP---GA-----KVIERAARENVPAFVFSPKD- 63 (212)
T ss_dssp EEEEEECCSSCHHH--HHHHHHHHTTC---------CCEEEEEEEESST---TC-----HHHHHHHHTTCCEEECCGGG-
T ss_pred cEEEEEEECCcHHH--HHHHHHHHhCC---------CCCeEEEEEeCCC---Cc-----HHHHHHHHcCCCEEEeCccc-
Confidence 47999999997643 33343333221 2236767666642 22 47889999999997653211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeeccccc
Q 005288 163 DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (704)
Q Consensus 163 ~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHha 201 (704)
. .+.++.- ..+.+..++.+.|.++++...
T Consensus 64 -~----~~~~~~~-----~~~~~~l~~~~~Dliv~a~y~ 92 (212)
T 3av3_A 64 -Y----PSKAAFE-----SEILRELKGRQIDWIALAGYM 92 (212)
T ss_dssp -S----SSHHHHH-----HHHHHHHHHTTCCEEEESSCC
T ss_pred -c----cchhhhH-----HHHHHHHHhcCCCEEEEchhh
Confidence 0 1212111 124556678899999987643
No 78
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=37.14 E-value=1.8e+02 Score=28.70 Aligned_cols=95 Identities=13% Similarity=0.067 Sum_probs=56.2
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~ 162 (704)
.||+|-+||....+ -.++..+.. .++.++.+|.-|+. + .+.++|+++|||++..+...
T Consensus 13 ~ri~vl~SG~gsnl--~all~~~~~----------~~~~eI~~Vis~~~-a--------~~~~~A~~~gIp~~~~~~~~- 70 (215)
T 3da8_A 13 ARLVVLASGTGSLL--RSLLDAAVG----------DYPARVVAVGVDRE-C--------RAAEIAAEASVPVFTVRLAD- 70 (215)
T ss_dssp EEEEEEESSCCHHH--HHHHHHSST----------TCSEEEEEEEESSC-C--------HHHHHHHHTTCCEEECCGGG-
T ss_pred cEEEEEEeCChHHH--HHHHHHHhc----------cCCCeEEEEEeCCc-h--------HHHHHHHHcCCCEEEeCccc-
Confidence 58999999986543 334433311 12346777776763 1 25788999999998764321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccccchhHHHHH
Q 005288 163 DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI 209 (704)
Q Consensus 163 ~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHhaDDqaET~L 209 (704)
. .+-++. -..+.+..++.+.|.++++....=.-+.++
T Consensus 71 -~----~~r~~~-----d~~~~~~l~~~~~Dlivlagy~~iL~~~~l 107 (215)
T 3da8_A 71 -H----PSRDAW-----DVAITAATAAHEPDLVVSAGFMRILGPQFL 107 (215)
T ss_dssp -S----SSHHHH-----HHHHHHHHHTTCCSEEEEEECCSCCCHHHH
T ss_pred -c----cchhhh-----hHHHHHHHHhhCCCEEEEcCchhhCCHHHH
Confidence 1 121221 223566777889999998765433333343
No 79
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=34.48 E-value=69 Score=31.09 Aligned_cols=90 Identities=11% Similarity=0.085 Sum_probs=55.6
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc
Q 005288 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCD 160 (704)
Q Consensus 81 ~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~ 160 (704)
+.++|++|+.|+.+|..++..+..+... .+.+++++||...- ++..+..+.+.+.++..|+++.+.-.
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~----------~~a~l~ll~v~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~~- 220 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARA----------LGLGVRVVSVHEDP-ARAEAWALEAEAYLRDHGVEASALVL- 220 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHH----------HTCCEEEEEECSSH-HHHHHHHHHHHHHHHHTTCCEEEEEE-
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhc----------CCCEEEEEEEcCcH-HHHHHHHHHHHHHHHHcCCceEEEEe-
Confidence 4479999999999998777665544321 11268899987532 11223344556666777888654321
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeeccc
Q 005288 161 WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199 (704)
Q Consensus 161 ~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGH 199 (704)
.|++.+ .+.+++++. +.|++|+
T Consensus 221 -------~g~~~~--------~i~~~a~~~--dliV~G~ 242 (268)
T 3ab8_A 221 -------GGDAAD--------HLLRLQGPG--DLLALGA 242 (268)
T ss_dssp -------CSCHHH--------HHHHHCCTT--EEEEEEC
T ss_pred -------CCChHH--------HHHHHHHhC--CEEEECC
Confidence 133322 345566665 8999998
No 80
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=33.84 E-value=47 Score=32.97 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=24.2
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCC
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGG 109 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g 109 (704)
+++|+||+|||.-..-...|+..+.+.|
T Consensus 4 ~k~IllgvTGaiaa~k~~~ll~~L~~~g 31 (209)
T 3zqu_A 4 PERITLAMTGASGAQYGLRLLDCLVQEE 31 (209)
T ss_dssp CSEEEEEECSSSCHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHCC
Confidence 4799999999999999888988886654
No 81
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=33.68 E-value=88 Score=31.04 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=51.8
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc
Q 005288 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCD 160 (704)
Q Consensus 81 ~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~ 160 (704)
+..||+|-+||+..-+ ..++..+. .+ +++.++.+|.-|+. .. ...++|+++|||+++.+..
T Consensus 7 ~~~ri~vl~SG~gsnl--~all~~~~-~~--------~~~~~I~~Vis~~~---~a-----~~l~~A~~~gIp~~~~~~~ 67 (215)
T 3kcq_A 7 KELRVGVLISGRGSNL--EALAKAFS-TE--------ESSVVISCVISNNA---EA-----RGLLIAQSYGIPTFVVKRK 67 (215)
T ss_dssp CCEEEEEEESSCCHHH--HHHHHHTC-CC---------CSEEEEEEEESCT---TC-----THHHHHHHTTCCEEECCBT
T ss_pred CCCEEEEEEECCcHHH--HHHHHHHH-cC--------CCCcEEEEEEeCCc---ch-----HHHHHHHHcCCCEEEeCcc
Confidence 3468999999985443 23343332 11 23347778777752 21 1357789999999865321
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeeccccc
Q 005288 161 WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (704)
Q Consensus 161 ~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHha 201 (704)
.-+- ..+.+..++++.|.++++...
T Consensus 68 -------~~~~---------~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 68 -------PLDI---------EHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp -------TBCH---------HHHHHHHHHTTCSEEEESSCC
T ss_pred -------cCCh---------HHHHHHHHHhCCCEEEEeCCc
Confidence 0011 345566678899999988654
No 82
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=33.27 E-value=2.5e+02 Score=27.45 Aligned_cols=88 Identities=11% Similarity=0.165 Sum_probs=50.2
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~ 162 (704)
.||++.+||..+-+ ..++..+...+ +..++.+|.-|.. .. .+.++|+++|||+.+++-..
T Consensus 2 ~rI~vl~SG~g~~~--~~~l~~l~~~~---------~~~~i~~Vvs~~~---~~-----~~~~~A~~~gIp~~~~~~~~- 61 (216)
T 2ywr_A 2 LKIGVLVSGRGSNL--QAIIDAIESGK---------VNASIELVISDNP---KA-----YAIERCKKHNVECKVIQRKE- 61 (216)
T ss_dssp EEEEEEECSCCHHH--HHHHHHHHTTS---------SCEEEEEEEESCT---TC-----HHHHHHHHHTCCEEECCGGG-
T ss_pred CEEEEEEeCCcHHH--HHHHHHHHhCC---------CCCeEEEEEeCCC---Ch-----HHHHHHHHcCCCEEEeCccc-
Confidence 37999999987543 23333332221 2225666666642 22 36788999999997653211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeecccc
Q 005288 163 DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200 (704)
Q Consensus 163 ~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHh 200 (704)
. .+.++. -..+.+..++.+.|.++++..
T Consensus 62 -~----~~r~~~-----~~~~~~~l~~~~~Dliv~a~y 89 (216)
T 2ywr_A 62 -F----PSKKEF-----EERMALELKKKGVELVVLAGF 89 (216)
T ss_dssp -S----SSHHHH-----HHHHHHHHHHTTCCEEEESSC
T ss_pred -c----cchhhh-----hHHHHHHHHhcCCCEEEEeCc
Confidence 1 111111 122455667889999988754
No 83
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=31.34 E-value=3.4e+02 Score=26.97 Aligned_cols=89 Identities=11% Similarity=0.088 Sum_probs=51.4
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~ 162 (704)
.||++.+||..+-+ ..++..+.... ++.++.+|..|. +.. .+.++|+++|||+.+++-..
T Consensus 23 ~rI~~l~SG~g~~~--~~~l~~l~~~~---------~~~~I~~Vvt~~---~~~-----~~~~~A~~~gIp~~~~~~~~- 82 (229)
T 3auf_A 23 IRIGVLISGSGTNL--QAILDGCREGR---------IPGRVAVVISDR---ADA-----YGLERARRAGVDALHMDPAA- 82 (229)
T ss_dssp EEEEEEESSCCHHH--HHHHHHHHTTS---------SSEEEEEEEESS---TTC-----HHHHHHHHTTCEEEECCGGG-
T ss_pred cEEEEEEeCCcHHH--HHHHHHHHhCC---------CCCeEEEEEcCC---Cch-----HHHHHHHHcCCCEEEECccc-
Confidence 48999999997543 33343332221 223666766663 222 36788999999987653211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeeccccc
Q 005288 163 DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (704)
Q Consensus 163 ~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHha 201 (704)
. .+.++. -..+.+..++.+.|.|+++...
T Consensus 83 -~----~~r~~~-----~~~~~~~l~~~~~Dliv~agy~ 111 (229)
T 3auf_A 83 -Y----PSRTAF-----DAALAERLQAYGVDLVCLAGYM 111 (229)
T ss_dssp -S----SSHHHH-----HHHHHHHHHHTTCSEEEESSCC
T ss_pred -c----cchhhc-----cHHHHHHHHhcCCCEEEEcChh
Confidence 0 111111 1224556678899999987543
No 84
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=30.97 E-value=1e+02 Score=27.27 Aligned_cols=69 Identities=13% Similarity=0.066 Sum_probs=41.4
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCC-------------CcHHHHHHHHHHH
Q 005288 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-------------ESKEEANIVSHRV 147 (704)
Q Consensus 81 ~~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~-------------eS~~Eae~V~kl~ 147 (704)
+.-+|++.++||.-|+.|+.-+.+.... .|+ ++.+..+..+--. .-.-..+.+++.+
T Consensus 5 ~~mkIlL~C~aGmSTsllv~km~~~a~~--------~gi--~v~i~a~~~~~~~~~~~~~DvvLLgPQV~y~~~~ik~~~ 74 (108)
T 3nbm_A 5 KELKVLVLCAGSGTSAQLANAINEGANL--------TEV--RVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDA 74 (108)
T ss_dssp CCEEEEEEESSSSHHHHHHHHHHHHHHH--------HTC--SEEEEEEETTSCTTTGGGCSEEEECGGGGGGHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHH--------CCC--ceEEEEcchHHHHhhccCCCEEEEChHHHHHHHHHHHHh
Confidence 3468999999999888777766665432 123 3333334443211 1111245577778
Q ss_pred HhcCCeEEEEEc
Q 005288 148 SDMGIRCEIVRC 159 (704)
Q Consensus 148 ~~LGIp~~Iv~~ 159 (704)
...|+|+.+++.
T Consensus 75 ~~~~ipV~vI~~ 86 (108)
T 3nbm_A 75 ERLGIQIVATRG 86 (108)
T ss_dssp TTTTCEEEECCH
T ss_pred hhcCCcEEEeCH
Confidence 888999887753
No 85
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=28.22 E-value=2e+02 Score=28.33 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=52.4
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcccc
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~ 162 (704)
.||+|-+||+..-+ ..++..+. .+ .+..++.+|.-|+. ... ..++|+++|||+++.+...
T Consensus 8 ~ri~vl~SG~gsnl--~all~~~~-~~--------~l~~~I~~Visn~~---~a~-----~l~~A~~~gIp~~~~~~~~- 67 (209)
T 4ds3_A 8 NRVVIFISGGGSNM--EALIRAAQ-AP--------GFPAEIVAVFSDKA---EAG-----GLAKAEAAGIATQVFKRKD- 67 (209)
T ss_dssp EEEEEEESSCCHHH--HHHHHHHT-ST--------TCSEEEEEEEESCT---TCT-----HHHHHHHTTCCEEECCGGG-
T ss_pred ccEEEEEECCcHHH--HHHHHHHH-cC--------CCCcEEEEEEECCc---ccH-----HHHHHHHcCCCEEEeCccc-
Confidence 58999999986443 23333332 21 13347778777752 211 2578899999998764211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeeccccc
Q 005288 163 DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (704)
Q Consensus 163 ~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHha 201 (704)
. .+.++ --..+.+..++.+.|.++++...
T Consensus 68 -~----~~r~~-----~d~~~~~~l~~~~~Dliv~agy~ 96 (209)
T 4ds3_A 68 -F----ASKEA-----HEDAILAALDVLKPDIICLAGYM 96 (209)
T ss_dssp -S----SSHHH-----HHHHHHHHHHHHCCSEEEESSCC
T ss_pred -c----CCHHH-----HHHHHHHHHHhcCCCEEEEeccc
Confidence 1 11111 11245566778899999988654
No 86
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=26.75 E-value=78 Score=30.74 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=22.1
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCC
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGG 109 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g 109 (704)
++|++|+|||....-...++..+.+.|
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~g 28 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEELD 28 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHTT
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHCC
Confidence 589999999999887778887776544
No 87
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=26.75 E-value=2.9e+02 Score=26.99 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=51.5
Q ss_pred EEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccccC
Q 005288 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (704)
Q Consensus 84 kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGLR~eS~~Eae~V~kl~~~LGIp~~Iv~~~~~~ 163 (704)
||+|-+||+.- .|-.++..+. .+ .++.++.+|.-|.. .. .+.++|+++|||+...+-. .
T Consensus 2 ri~vl~Sg~gs--nl~ali~~~~-~~--------~~~~~i~~Vis~~~---~~-----~~~~~A~~~gIp~~~~~~~--~ 60 (212)
T 1jkx_A 2 NIVVLISGNGS--NLQAIIDACK-TN--------KIKGTVRAVFSNKA---DA-----FGLERARQAGIATHTLIAS--A 60 (212)
T ss_dssp EEEEEESSCCH--HHHHHHHHHH-TT--------SSSSEEEEEEESCT---TC-----HHHHHHHHTTCEEEECCGG--G
T ss_pred EEEEEEECCcH--HHHHHHHHHH-cC--------CCCceEEEEEeCCC---ch-----HHHHHHHHcCCcEEEeCcc--c
Confidence 79999999883 2344444332 22 12346777776642 22 3578899999998765321 1
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeeccccc
Q 005288 164 GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (704)
Q Consensus 164 ~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGHha 201 (704)
. .+.++. -..+.+..++.+.|.++++...
T Consensus 61 ~----~~r~~~-----~~~~~~~l~~~~~Dliv~agy~ 89 (212)
T 1jkx_A 61 F----DSREAY-----DRELIHEIDMYAPDVVVLAGFM 89 (212)
T ss_dssp C----SSHHHH-----HHHHHHHHGGGCCSEEEESSCC
T ss_pred c----cchhhc-----cHHHHHHHHhcCCCEEEEeChh
Confidence 0 111111 1224556678899999987543
No 88
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=25.28 E-value=3.6e+02 Score=27.34 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=53.3
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhh-CCCCCCCCCCCCCCcEEEEEEe--CCCCC---CcHHHHHHHHHHHHhcCCeEE
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKT-GGFNQNGEAGEFIDGLLAITVD--HGLRE---ESKEEANIVSHRVSDMGIRCE 155 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~-~g~~~~~~~~gi~~~L~AVhVD--HGLR~---eS~~Eae~V~kl~~~LGIp~~ 155 (704)
+....||+|||.-=..+...|..... ...+ | .+++.+.+| .|+-. +| ......+.++++++++..
T Consensus 32 ~~~~~lglsgGsTp~~~~~~L~~~~~~~~i~-------~-~~v~v~~lDEr~gv~~~~~~S-n~~~~~~~l~~~~~~~~~ 102 (289)
T 1ne7_A 32 EKYFTLGLPTGSTPLGCYKKLIEYYKNGDLS-------F-KYVKTFNMDEYVGLPRDHPES-YHSFMWNNFFKHIDIHPE 102 (289)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHHHTTSCC-------C-TTEEEEESEEETTSCTTSTTS-HHHHHHHHTGGGSCCCGG
T ss_pred CCCEEEEEcCCccHHHHHHHHHhhhhccCCC-------c-hheEEEeCceeecCCCCcHHH-HHHHHHHHhhccCCCCHH
Confidence 34489999999755555555543211 1121 2 278899999 66642 23 223334456777787654
Q ss_pred EEEccccCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEeeccc
Q 005288 156 IVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199 (704)
Q Consensus 156 Iv~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e~G~~~LatGH 199 (704)
.+.... . ...++++.| .+|+-..+. ..++|.+++|=
T Consensus 103 ~i~~p~--~--~~~~~e~~~--~~ye~~i~~--~~~~Dl~lLGi 138 (289)
T 1ne7_A 103 NTHILD--G--NAVDLQAEC--DAFEEKIKA--AGGIELFVGGI 138 (289)
T ss_dssp GEECCC--T--TCSSHHHHH--HHHHHHHHH--TTSCSEEEECC
T ss_pred HEecCC--C--CCCCHHHHH--HHHHHHHHh--cCCCCEEEEcc
Confidence 333211 0 112566655 344432222 13678888773
No 89
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=23.52 E-value=1.5e+02 Score=28.53 Aligned_cols=16 Identities=6% Similarity=-0.039 Sum_probs=7.3
Q ss_pred HHHHHHHcCCCEeecc
Q 005288 183 FQKVCIQHQIGVLLIA 198 (704)
Q Consensus 183 L~~~A~e~G~~~LatG 198 (704)
+.+.|+++|++.++.-
T Consensus 29 i~~~~~~~g~~~~~~~ 44 (276)
T 3jy6_A 29 ISSILESRGYIGVLFD 44 (276)
T ss_dssp HHHHHHTTTCEEEEEE
T ss_pred HHHHHHHCCCEEEEEe
Confidence 3444445555444433
No 90
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=22.41 E-value=74 Score=30.62 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=22.1
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCC
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGG 109 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g 109 (704)
++|++|+|||.-..-...++..+++.|
T Consensus 6 k~IllgvTGs~aa~k~~~ll~~L~~~g 32 (175)
T 3qjg_A 6 ENVLICLCGSVNSINISHYIIELKSKF 32 (175)
T ss_dssp CEEEEEECSSGGGGGHHHHHHHHTTTC
T ss_pred CEEEEEEeCHHHHHHHHHHHHHHHHCC
Confidence 789999999999887778887775543
No 91
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=22.26 E-value=3.3e+02 Score=27.90 Aligned_cols=100 Identities=14% Similarity=0.249 Sum_probs=53.3
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhh-CCCCCCCCCCCCCCcEEEEEEeC--CCCCCcHH-HHHHHHH-HHHhcCCeEEE
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKT-GGFNQNGEAGEFIDGLLAITVDH--GLREESKE-EANIVSH-RVSDMGIRCEI 156 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~-~g~~~~~~~~gi~~~L~AVhVDH--GLR~eS~~-Eae~V~k-l~~~LGIp~~I 156 (704)
+++..+|+|||.-=..+...|.+... .+.+ | .+++.+.+|- |+-++..+ -..++++ +....+|+-.-
T Consensus 53 ~~~~~l~LsgGsTP~~~y~~L~~~~~~~~id-------w-~~v~~f~~DEr~gvp~~~~~Sn~~~~~~~Ll~~v~i~~~~ 124 (289)
T 3hn6_A 53 ENPFILGLPTGSSPIGMYKNLIELNKNKKIS-------F-QNVITFNMDEYIGIEENHPESYHSFMWNNFFSHIDIKKEN 124 (289)
T ss_dssp TBCEEEEECCSSTTHHHHHHHHHHHHTTSCC-------C-TTEEEEESEEESSCCTTSTTSHHHHHHHHTGGGSCCCGGG
T ss_pred CCcEEEEECCCccHHHHHHHHHHhHhhcCCC-------c-hheEEEeCcceecCCCCcHHHHHHHHHHHhhccCCCCHHH
Confidence 34689999999766666655544222 2222 2 2688889997 55432211 2233444 55666765322
Q ss_pred EEccccCCCCCCCChHHHHHHHHHHHHHHHHHH-cCCCEeecc
Q 005288 157 VRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQ-HQIGVLLIA 198 (704)
Q Consensus 157 v~~~~~~~~~~~gniEe~AR~~RY~~L~~~A~e-~G~~~LatG 198 (704)
+..- . ....++++.|+. |+. ..++ .++|.+++|
T Consensus 125 i~~~--~--~~~~d~~~~a~~--Ye~---~i~~~~~~Dl~lLG 158 (289)
T 3hn6_A 125 INIL--N--GNASNLKKECEE--YEK---KIKSFGGIMLFVGG 158 (289)
T ss_dssp EECC--C--TTCSSHHHHHHH--HHH---HHHHTTSCSEEEEE
T ss_pred eecC--C--CCCCCHHHHHHH--HHH---HHhhcCCCCEEEEc
Confidence 2111 0 112356777664 442 2223 368988887
No 92
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=22.12 E-value=63 Score=31.22 Aligned_cols=27 Identities=4% Similarity=0.010 Sum_probs=22.1
Q ss_pred CEEEEEEcCChhHHHHHHHHHhhhhCC
Q 005288 83 HRIALGVSGGPDSMALCVLTAGWKTGG 109 (704)
Q Consensus 83 ~kVlVAVSGGvDSmaLL~LL~~~~~~g 109 (704)
+||++|+|||....-...++..+++.|
T Consensus 3 k~IllgvTGs~aa~k~~~l~~~L~~~g 29 (181)
T 1g63_A 3 GKLLICATASINVININHYIVELKQHF 29 (181)
T ss_dssp CCEEEEECSCGGGGGHHHHHHHHTTTS
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHCC
Confidence 589999999999988888888775443
No 93
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=21.43 E-value=2.3e+02 Score=28.71 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=26.4
Q ss_pred CCEEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEeCCC
Q 005288 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132 (704)
Q Consensus 82 ~~kVlVAVSGGvDSmaLL~LL~~~~~~g~~~~~~~~gi~~~L~AVhVDHGL 132 (704)
+.+..+|+|||.-=..+...|.+.. ...+ | .+++.+.+|-.+
T Consensus 54 ~~~~~l~LsgGstP~~~y~~L~~~~-~~id-------w-~~v~~f~~DEr~ 95 (268)
T 3ico_A 54 RGQALIVLTGGGNGIALLRYLSAQA-QQIE-------W-SKVHLFWGDERY 95 (268)
T ss_dssp HSCEEEEECCSHHHHHHHHHHHHHG-GGSC-------G-GGEEEEESEEEC
T ss_pred cCceEEEEecCCchhHHHHHHHHHh-hhhh-------h-eeeEEeeccccc
Confidence 4689999999975445555554321 2222 2 278888888754
No 94
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=20.84 E-value=64 Score=31.93 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=19.9
Q ss_pred CCEEEEEEcCChhHHH-HHHHHHhhhhCC
Q 005288 82 HHRIALGVSGGPDSMA-LCVLTAGWKTGG 109 (704)
Q Consensus 82 ~~kVlVAVSGGvDSma-LL~LL~~~~~~g 109 (704)
+++|++|+|||.-..- .+.++..+++.|
T Consensus 5 ~k~IllgiTGsiaayk~~~~ll~~L~~~g 33 (207)
T 3mcu_A 5 GKRIGFGFTGSHCTYEEVMPHLEKLIAEG 33 (207)
T ss_dssp TCEEEEEECSCGGGGTTSHHHHHHHHHTT
T ss_pred CCEEEEEEEChHHHHHHHHHHHHHHHhCC
Confidence 4799999999975442 456677666554
Done!