Query 005291
Match_columns 704
No_of_seqs 575 out of 3685
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 21:08:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005291.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005291hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922 DEAH-box RNA helicase 100.0 2E-150 5E-155 1205.7 52.8 619 3-646 49-669 (674)
2 KOG0924 mRNA splicing factor A 100.0 3E-146 7E-151 1156.6 47.5 622 3-646 354-975 (1042)
3 KOG0923 mRNA splicing factor A 100.0 6E-146 1E-150 1154.7 47.0 621 3-646 263-885 (902)
4 KOG0925 mRNA splicing factor A 100.0 4E-140 9E-145 1076.8 46.7 619 3-646 45-669 (699)
5 PRK11131 ATP-dependent RNA hel 100.0 2E-120 4E-125 1065.3 56.9 610 2-644 71-697 (1294)
6 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2E-116 4E-121 1035.7 57.3 609 3-645 65-688 (1283)
7 COG1643 HrpA HrpA-like helicas 100.0 4E-116 8E-121 997.4 45.5 625 2-641 47-708 (845)
8 KOG0926 DEAH-box RNA helicase 100.0 1E-113 2E-118 923.1 44.1 628 3-646 254-1025(1172)
9 KOG0920 ATP-dependent RNA heli 100.0 4E-111 9E-116 949.9 39.5 633 3-643 171-848 (924)
10 PRK11664 ATP-dependent RNA hel 100.0 6.2E-96 1E-100 848.8 56.6 565 1-643 1-570 (812)
11 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.2E-95 3E-100 844.1 53.4 573 4-642 1-576 (819)
12 KOG0921 Dosage compensation co 100.0 8.1E-65 1.8E-69 551.2 21.9 655 3-671 376-1104(1282)
13 PHA02653 RNA helicase NPH-II; 100.0 6.5E-59 1.4E-63 526.5 34.4 391 8-441 167-595 (675)
14 PRK01172 ski2-like helicase; P 100.0 1.7E-42 3.7E-47 403.7 35.3 431 4-453 21-505 (674)
15 PRK02362 ski2-like helicase; P 100.0 4.8E-40 1E-44 385.7 39.6 514 6-535 24-623 (737)
16 PRK00254 ski2-like helicase; P 100.0 2.4E-37 5.1E-42 362.1 36.4 434 6-457 24-525 (720)
17 PRK11776 ATP-dependent RNA hel 100.0 3.7E-37 8E-42 344.1 26.8 310 6-350 27-352 (460)
18 KOG0330 ATP-dependent RNA heli 100.0 6.9E-38 1.5E-42 316.2 18.6 310 7-350 85-410 (476)
19 KOG0331 ATP-dependent RNA heli 100.0 1.6E-36 3.5E-41 326.4 22.4 311 8-351 116-452 (519)
20 PTZ00110 helicase; Provisional 100.0 4.3E-36 9.2E-41 339.5 26.8 313 6-350 153-487 (545)
21 PRK04837 ATP-dependent RNA hel 100.0 5.1E-36 1.1E-40 331.4 24.7 308 7-349 32-364 (423)
22 PRK10590 ATP-dependent RNA hel 100.0 7.3E-36 1.6E-40 332.5 25.8 309 6-349 24-354 (456)
23 PRK11192 ATP-dependent RNA hel 100.0 6.6E-36 1.4E-40 331.8 23.1 311 6-350 24-355 (434)
24 PRK04537 ATP-dependent RNA hel 100.0 1.9E-35 4E-40 335.3 26.5 309 6-349 32-366 (572)
25 PTZ00424 helicase 45; Provisio 100.0 7.8E-36 1.7E-40 328.4 21.9 313 6-351 51-378 (401)
26 PRK11634 ATP-dependent RNA hel 100.0 2.9E-35 6.2E-40 335.6 27.1 309 6-349 29-354 (629)
27 PRK01297 ATP-dependent RNA hel 100.0 1.1E-35 2.3E-40 333.2 22.8 309 6-349 110-444 (475)
28 PLN00206 DEAD-box ATP-dependen 100.0 1.8E-35 4E-40 333.3 24.6 311 6-350 144-478 (518)
29 COG0513 SrmB Superfamily II DN 100.0 4.6E-35 9.9E-40 328.0 24.6 308 6-347 52-380 (513)
30 TIGR03817 DECH_helic helicase/ 100.0 1.8E-34 3.9E-39 335.2 26.5 319 6-347 37-386 (742)
31 COG1204 Superfamily II helicas 100.0 2.6E-33 5.6E-38 322.1 27.8 416 10-441 37-526 (766)
32 TIGR00614 recQ_fam ATP-depende 100.0 3E-33 6.5E-38 312.4 26.8 305 6-351 12-337 (470)
33 PLN03137 ATP-dependent DNA hel 100.0 1.3E-33 2.7E-38 325.9 22.5 306 6-351 461-791 (1195)
34 KOG0333 U5 snRNP-like RNA heli 100.0 8.5E-34 1.8E-38 295.8 18.0 307 8-349 270-626 (673)
35 COG1202 Superfamily II helicas 100.0 2.6E-33 5.6E-38 294.6 21.4 430 15-479 227-703 (830)
36 KOG0345 ATP-dependent RNA heli 100.0 1.7E-33 3.7E-38 290.6 18.6 326 7-364 30-383 (567)
37 KOG0338 ATP-dependent RNA heli 100.0 7.5E-34 1.6E-38 295.0 14.9 309 8-349 206-535 (691)
38 PRK11057 ATP-dependent DNA hel 100.0 6.9E-33 1.5E-37 317.6 24.2 304 6-350 26-346 (607)
39 KOG0328 Predicted ATP-dependen 100.0 2.4E-33 5.2E-38 271.9 16.3 312 7-351 51-377 (400)
40 KOG0342 ATP-dependent RNA heli 100.0 1.2E-32 2.5E-37 286.5 20.6 310 6-349 105-439 (543)
41 TIGR01389 recQ ATP-dependent D 100.0 6.9E-32 1.5E-36 310.1 23.4 303 6-350 14-334 (591)
42 PRK13767 ATP-dependent helicas 100.0 1.8E-31 4E-36 316.2 27.7 313 6-343 33-396 (876)
43 KOG0343 RNA Helicase [RNA proc 100.0 1.8E-32 3.9E-37 287.0 16.4 313 6-350 92-425 (758)
44 KOG0340 ATP-dependent RNA heli 100.0 1.3E-31 2.9E-36 267.8 16.9 310 7-350 31-364 (442)
45 KOG0326 ATP-dependent RNA heli 100.0 7.3E-32 1.6E-36 265.6 12.5 310 8-351 110-433 (459)
46 COG1201 Lhr Lhr-like helicases 100.0 4.8E-30 1E-34 291.1 25.4 298 7-335 24-348 (814)
47 PRK09751 putative ATP-dependen 100.0 1.8E-30 4E-35 311.9 22.6 295 25-341 1-379 (1490)
48 COG1111 MPH1 ERCC4-like helica 100.0 1.4E-29 3.1E-34 265.6 25.2 316 4-348 14-482 (542)
49 TIGR00580 mfd transcription-re 100.0 1.5E-29 3.3E-34 296.7 26.9 299 6-347 452-770 (926)
50 TIGR01587 cas3_core CRISPR-ass 100.0 1.3E-29 2.7E-34 274.7 24.0 290 22-348 1-337 (358)
51 KOG0332 ATP-dependent RNA heli 100.0 5.2E-30 1.1E-34 257.8 18.6 315 8-349 115-445 (477)
52 KOG0348 ATP-dependent RNA heli 100.0 6.7E-30 1.5E-34 267.1 20.0 343 7-369 161-577 (708)
53 PRK10917 ATP-dependent DNA hel 100.0 2.4E-29 5.1E-34 291.4 25.8 298 5-345 261-587 (681)
54 PRK10689 transcription-repair 100.0 9.8E-30 2.1E-34 304.5 23.0 299 6-347 601-919 (1147)
55 TIGR00643 recG ATP-dependent D 100.0 2.3E-29 4.9E-34 289.8 24.0 301 6-345 236-564 (630)
56 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.9E-29 4E-34 287.9 22.0 333 5-377 15-421 (844)
57 COG0514 RecQ Superfamily II DN 100.0 1.7E-29 3.8E-34 277.1 19.7 303 9-350 21-340 (590)
58 KOG0335 ATP-dependent RNA heli 100.0 7.4E-30 1.6E-34 270.3 15.6 305 8-346 99-443 (482)
59 KOG0336 ATP-dependent RNA heli 100.0 6.2E-30 1.4E-34 259.2 14.0 311 8-351 245-576 (629)
60 KOG0339 ATP-dependent RNA heli 100.0 1.8E-29 4E-34 262.0 15.6 310 7-350 247-578 (731)
61 KOG0952 DNA/RNA helicase MER3/ 100.0 2E-28 4.2E-33 273.6 23.9 436 9-457 114-640 (1230)
62 KOG0354 DEAD-box like helicase 100.0 4.6E-28 9.9E-33 268.5 24.5 319 3-347 60-529 (746)
63 KOG0350 DEAD-box ATP-dependent 100.0 9.5E-29 2.1E-33 257.0 17.7 302 20-351 183-544 (620)
64 TIGR03158 cas3_cyano CRISPR-as 100.0 1.1E-27 2.3E-32 257.8 25.7 285 9-333 1-357 (357)
65 KOG0341 DEAD-box protein abstr 100.0 3.2E-29 7E-34 252.4 8.9 300 13-351 200-532 (610)
66 KOG0346 RNA helicase [RNA proc 100.0 8.8E-28 1.9E-32 246.2 17.9 308 8-349 44-412 (569)
67 KOG0347 RNA helicase [RNA proc 100.0 5.6E-29 1.2E-33 261.0 9.4 310 10-350 208-573 (731)
68 PHA02558 uvsW UvsW helicase; P 100.0 6.3E-27 1.4E-31 263.0 24.4 296 4-339 113-443 (501)
69 COG1205 Distinct helicase fami 99.9 1.7E-26 3.6E-31 269.6 23.8 325 5-351 70-426 (851)
70 KOG4284 DEAD box protein [Tran 99.9 1E-26 2.2E-31 247.5 14.6 312 8-348 50-380 (980)
71 KOG0344 ATP-dependent RNA heli 99.9 1.4E-26 3E-31 246.8 14.9 307 10-351 163-499 (593)
72 PRK13766 Hef nuclease; Provisi 99.9 1.4E-25 3.1E-30 266.4 25.3 317 3-350 13-482 (773)
73 PRK09401 reverse gyrase; Revie 99.9 1.5E-25 3.3E-30 269.2 19.4 275 5-304 80-412 (1176)
74 KOG0327 Translation initiation 99.9 1.7E-25 3.8E-30 227.5 14.5 308 8-351 51-374 (397)
75 KOG0951 RNA helicase BRR2, DEA 99.9 2.2E-24 4.9E-29 243.8 22.6 427 9-446 313-836 (1674)
76 PRK09694 helicase Cas3; Provis 99.9 1E-23 2.2E-28 245.3 26.9 298 6-336 287-663 (878)
77 KOG0334 RNA helicase [RNA proc 99.9 8.9E-25 1.9E-29 246.9 17.5 311 5-349 387-722 (997)
78 TIGR00603 rad25 DNA repair hel 99.9 7.3E-24 1.6E-28 240.0 24.7 303 4-351 254-611 (732)
79 COG4581 Superfamily II RNA hel 99.9 2.2E-24 4.7E-29 248.3 18.4 329 4-347 118-537 (1041)
80 COG4098 comFA Superfamily II D 99.9 3.7E-23 7.9E-28 206.8 23.7 290 11-341 107-410 (441)
81 TIGR01054 rgy reverse gyrase. 99.9 1.9E-23 4E-28 251.6 22.7 275 5-305 78-412 (1171)
82 PRK14701 reverse gyrase; Provi 99.9 3.8E-24 8.2E-29 262.2 16.9 310 5-344 79-453 (1638)
83 KOG0947 Cytoplasmic exosomal R 99.9 5E-24 1.1E-28 235.8 16.1 325 4-347 296-723 (1248)
84 KOG0352 ATP-dependent DNA heli 99.9 1.7E-23 3.7E-28 213.8 16.0 306 9-351 24-366 (641)
85 PRK05580 primosome assembly pr 99.9 5.5E-23 1.2E-27 237.5 21.8 315 4-343 143-545 (679)
86 KOG0351 ATP-dependent DNA heli 99.9 1.2E-23 2.6E-28 243.9 16.0 305 8-351 267-596 (941)
87 KOG0948 Nuclear exosomal RNA h 99.9 2.8E-24 6.1E-29 232.4 9.6 324 5-347 129-539 (1041)
88 TIGR00595 priA primosomal prot 99.9 6.1E-23 1.3E-27 229.1 19.3 295 24-342 1-376 (505)
89 COG1200 RecG RecG-like helicas 99.9 2E-22 4.3E-27 220.8 20.3 301 6-348 263-592 (677)
90 TIGR03714 secA2 accessory Sec 99.9 8.8E-22 1.9E-26 223.2 25.7 108 211-349 422-539 (762)
91 COG1061 SSL2 DNA or RNA helica 99.9 7.2E-22 1.6E-26 217.9 23.7 288 4-337 35-378 (442)
92 KOG0337 ATP-dependent RNA heli 99.9 4.2E-23 9.1E-28 211.1 11.1 308 8-349 46-370 (529)
93 PRK09200 preprotein translocas 99.9 8.7E-22 1.9E-26 225.3 22.7 108 212-349 427-543 (790)
94 COG1197 Mfd Transcription-repa 99.9 2E-21 4.4E-26 223.9 24.6 294 12-349 605-915 (1139)
95 PRK12898 secA preprotein trans 99.9 1.4E-21 3.1E-26 219.0 22.0 106 213-348 473-587 (656)
96 PRK11448 hsdR type I restricti 99.9 1.2E-20 2.6E-25 225.9 26.2 313 5-344 413-812 (1123)
97 TIGR00963 secA preprotein tran 99.9 6.6E-21 1.4E-25 214.7 21.3 118 200-349 394-519 (745)
98 KOG0353 ATP-dependent DNA heli 99.8 6.3E-20 1.4E-24 184.9 18.8 270 7-302 96-396 (695)
99 COG1203 CRISPR-associated heli 99.8 5.4E-20 1.2E-24 214.7 20.8 307 6-345 196-548 (733)
100 KOG0950 DNA polymerase theta/e 99.8 4.9E-20 1.1E-24 206.2 19.1 323 7-349 225-613 (1008)
101 PF07717 OB_NTP_bind: Oligonuc 99.8 5.3E-20 1.1E-24 165.2 6.6 110 527-642 1-114 (114)
102 PRK04914 ATP-dependent helicas 99.8 4E-18 8.6E-23 200.1 23.5 313 5-349 152-607 (956)
103 PF04408 HA2: Helicase associa 99.8 5.5E-19 1.2E-23 154.6 8.1 95 399-493 1-102 (102)
104 KOG0921 Dosage compensation co 99.8 1.8E-20 3.9E-25 206.2 -2.2 447 4-464 405-898 (1282)
105 PRK12906 secA preprotein trans 99.7 5.1E-17 1.1E-21 185.1 18.7 108 211-348 438-554 (796)
106 PRK13104 secA preprotein trans 99.7 1.1E-16 2.4E-21 183.2 20.9 136 199-348 432-588 (896)
107 KOG0329 ATP-dependent RNA heli 99.7 2.8E-17 6.2E-22 158.2 12.6 274 9-350 68-358 (387)
108 KOG0949 Predicted helicase, DE 99.7 6.6E-17 1.4E-21 180.2 15.8 161 6-170 512-682 (1330)
109 PRK12904 preprotein translocas 99.7 2E-16 4.3E-21 181.0 17.4 126 211-348 428-574 (830)
110 smart00847 HA2 Helicase associ 99.7 4E-17 8.6E-22 140.5 8.0 90 399-493 1-92 (92)
111 KOG0953 Mitochondrial RNA heli 99.7 3.4E-16 7.5E-21 165.8 15.6 281 20-347 191-477 (700)
112 KOG0349 Putative DEAD-box RNA 99.7 2.5E-16 5.5E-21 161.7 12.1 270 49-344 286-612 (725)
113 PF00270 DEAD: DEAD/DEAH box h 99.6 7.3E-16 1.6E-20 148.2 10.7 156 8-166 2-167 (169)
114 COG4096 HsdR Type I site-speci 99.6 3.3E-14 7.1E-19 158.6 24.7 334 7-378 167-578 (875)
115 PRK13107 preprotein translocas 99.6 1.6E-14 3.5E-19 165.1 20.5 136 198-348 436-592 (908)
116 COG1110 Reverse gyrase [DNA re 99.6 2.3E-14 5.1E-19 161.9 21.4 272 4-304 81-419 (1187)
117 cd00268 DEADc DEAD-box helicas 99.6 3.9E-15 8.4E-20 148.0 12.8 156 6-163 22-187 (203)
118 TIGR00348 hsdR type I site-spe 99.6 5.4E-14 1.2E-18 162.9 22.3 285 21-339 264-639 (667)
119 COG1198 PriA Primosomal protei 99.6 3.1E-14 6.7E-19 161.8 19.4 314 4-342 197-598 (730)
120 PRK12899 secA preprotein trans 99.6 2.2E-13 4.8E-18 156.0 21.6 121 6-128 93-226 (970)
121 TIGR00631 uvrb excinuclease AB 99.5 4.6E-14 1E-18 161.7 14.9 115 211-348 440-554 (655)
122 TIGR01407 dinG_rel DnaQ family 99.5 6.2E-12 1.3E-16 150.3 29.4 139 195-343 657-811 (850)
123 KOG4150 Predicted ATP-dependen 99.5 8.3E-14 1.8E-18 147.5 9.8 312 6-339 287-632 (1034)
124 TIGR02562 cas3_yersinia CRISPR 99.5 4.1E-12 8.9E-17 146.7 24.5 96 217-337 760-881 (1110)
125 PRK05298 excinuclease ABC subu 99.5 2.9E-13 6.2E-18 156.4 14.6 112 212-346 445-556 (652)
126 PF07652 Flavi_DEAD: Flaviviru 99.4 6E-13 1.3E-17 120.4 10.6 134 18-163 2-139 (148)
127 cd00079 HELICc Helicase superf 99.4 8.2E-13 1.8E-17 121.0 10.9 103 212-342 27-130 (131)
128 cd00046 DEXDc DEAD-like helica 99.4 2E-12 4.4E-17 119.1 13.2 136 21-160 1-144 (144)
129 COG0556 UvrB Helicase subunit 99.4 4.7E-11 1E-15 127.1 23.1 167 150-344 386-554 (663)
130 smart00487 DEXDc DEAD-like hel 99.4 3.9E-12 8.5E-17 124.7 14.2 156 4-161 7-171 (201)
131 KOG1123 RNA polymerase II tran 99.4 4.2E-12 9.2E-17 133.2 14.1 300 6-349 303-655 (776)
132 PLN03142 Probable chromatin-re 99.4 3.4E-11 7.4E-16 142.6 23.2 308 6-351 170-603 (1033)
133 PF00271 Helicase_C: Helicase 99.3 6.3E-13 1.4E-17 110.5 4.3 72 246-335 6-77 (78)
134 PRK07246 bifunctional ATP-depe 99.3 4E-10 8.6E-15 133.2 27.7 135 194-343 630-780 (820)
135 KOG0951 RNA helicase BRR2, DEA 99.3 4.5E-11 9.9E-16 137.3 18.2 318 18-359 1157-1508(1674)
136 PF04851 ResIII: Type III rest 99.3 3.2E-11 7E-16 117.2 12.2 147 4-161 2-183 (184)
137 PRK12900 secA preprotein trans 99.3 2E-11 4.3E-16 140.6 11.6 164 152-349 535-713 (1025)
138 PRK12326 preprotein translocas 99.3 2.7E-10 5.8E-15 128.0 19.6 125 198-348 414-548 (764)
139 smart00490 HELICc helicase sup 99.2 2.6E-11 5.6E-16 101.1 5.2 71 247-335 11-81 (82)
140 PRK13103 secA preprotein trans 99.2 7.5E-10 1.6E-14 127.4 18.1 102 23-128 98-213 (913)
141 PRK08074 bifunctional ATP-depe 99.1 1.2E-08 2.7E-13 122.8 26.4 140 195-343 735-890 (928)
142 TIGR03117 cas_csf4 CRISPR-asso 99.1 7.5E-08 1.6E-12 109.4 30.8 137 196-346 454-616 (636)
143 PF02399 Herpes_ori_bp: Origin 99.1 1.1E-08 2.3E-13 116.2 22.5 291 18-350 47-391 (824)
144 PRK12903 secA preprotein trans 99.0 1.7E-08 3.8E-13 115.2 21.0 117 198-347 413-539 (925)
145 CHL00122 secA preprotein trans 99.0 8.1E-09 1.8E-13 118.5 17.4 113 13-128 82-207 (870)
146 PRK14873 primosome assembly pr 99.0 6E-09 1.3E-13 119.7 16.4 134 24-166 164-309 (665)
147 KOG0385 Chromatin remodeling c 98.8 1.7E-07 3.6E-12 104.1 19.7 116 211-351 485-603 (971)
148 PRK12902 secA preprotein trans 98.8 1.5E-07 3.2E-12 108.2 18.1 113 13-128 91-216 (939)
149 COG4889 Predicted helicase [Ge 98.8 1.2E-08 2.6E-13 113.8 8.4 313 6-341 162-578 (1518)
150 KOG0387 Transcription-coupled 98.6 3.1E-06 6.7E-11 94.8 19.5 125 202-351 536-662 (923)
151 KOG0390 DNA repair protein, SN 98.5 6.4E-06 1.4E-10 94.3 20.8 91 246-351 618-711 (776)
152 KOG0384 Chromodomain-helicase 98.5 1.7E-06 3.7E-11 100.8 16.1 139 210-376 696-837 (1373)
153 PF00448 SRP54: SRP54-type pro 98.4 2.7E-06 5.9E-11 83.6 11.1 127 21-165 2-130 (196)
154 KOG1000 Chromatin remodeling p 98.3 5.9E-05 1.3E-09 80.5 21.0 302 11-349 205-605 (689)
155 COG1419 FlhF Flagellar GTP-bin 98.3 1.4E-05 3.1E-10 84.9 15.1 129 19-170 202-333 (407)
156 PF13401 AAA_22: AAA domain; P 98.3 9.7E-07 2.1E-11 80.8 5.0 115 18-159 2-125 (131)
157 cd03216 ABC_Carb_Monos_I This 98.2 7.1E-06 1.5E-10 78.4 10.3 120 16-160 22-142 (163)
158 COG1121 ZnuC ABC-type Mn/Zn tr 98.2 1.6E-06 3.5E-11 87.2 6.0 148 16-170 26-207 (254)
159 cd03229 ABC_Class3 This class 98.2 2.2E-06 4.7E-11 83.3 6.7 134 16-160 22-161 (178)
160 cd03222 ABC_RNaseL_inhibitor T 98.2 1.1E-05 2.3E-10 78.0 11.4 111 16-160 21-132 (177)
161 PRK12723 flagellar biosynthesi 98.2 1.7E-05 3.7E-10 85.7 13.7 128 20-170 174-307 (388)
162 cd03230 ABC_DR_subfamily_A Thi 98.2 3E-06 6.6E-11 81.8 6.8 130 16-160 22-155 (173)
163 COG1120 FepC ABC-type cobalami 98.2 8.5E-06 1.9E-10 82.4 9.9 145 16-161 24-200 (258)
164 COG1127 Ttg2A ABC-type transpo 98.2 6.4E-06 1.4E-10 80.9 8.5 144 16-162 30-208 (263)
165 cd03228 ABCC_MRP_Like The MRP 98.2 1.4E-05 3E-10 77.0 11.0 129 16-160 24-155 (171)
166 cd03246 ABCC_Protease_Secretio 98.2 1.5E-05 3.3E-10 77.0 11.1 131 16-161 24-157 (173)
167 cd03247 ABCC_cytochrome_bd The 98.1 1.5E-05 3.1E-10 77.5 10.8 131 16-161 24-158 (178)
168 COG4555 NatA ABC-type Na+ tran 98.1 6.4E-06 1.4E-10 78.6 7.8 144 16-160 24-193 (245)
169 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.1 1.3E-05 2.7E-10 75.0 9.8 106 16-160 22-127 (144)
170 COG0610 Type I site-specific r 98.1 9.4E-05 2E-09 89.3 19.5 131 21-160 274-413 (962)
171 PRK14722 flhF flagellar biosyn 98.1 1.9E-05 4E-10 84.7 12.1 127 17-166 134-263 (374)
172 PRK11889 flhF flagellar biosyn 98.1 3.1E-05 6.8E-10 82.4 13.4 123 20-164 241-366 (436)
173 cd03214 ABC_Iron-Siderophores_ 98.1 1.1E-05 2.5E-10 78.3 9.0 129 17-161 22-159 (180)
174 cd00267 ABC_ATPase ABC (ATP-bi 98.1 2.2E-05 4.7E-10 74.5 10.4 118 17-160 22-140 (157)
175 COG1126 GlnQ ABC-type polar am 98.1 9.2E-06 2E-10 78.6 7.7 142 16-161 24-197 (240)
176 PF13604 AAA_30: AAA domain; P 98.1 1E-05 2.2E-10 79.7 7.8 121 7-159 3-130 (196)
177 cd03213 ABCG_EPDR ABCG transpo 98.0 5.7E-06 1.2E-10 81.5 5.5 130 16-161 31-172 (194)
178 cd03233 ABC_PDR_domain1 The pl 98.0 5.5E-06 1.2E-10 82.2 5.3 150 17-168 30-186 (202)
179 cd03238 ABC_UvrA The excision 98.0 4.6E-05 1E-09 73.5 11.3 127 16-161 17-150 (176)
180 COG1122 CbiO ABC-type cobalt t 98.0 6.1E-06 1.3E-10 83.1 5.3 150 16-169 26-206 (235)
181 cd03215 ABC_Carb_Monos_II This 98.0 7.9E-06 1.7E-10 79.6 5.9 133 16-160 22-164 (182)
182 COG1131 CcmA ABC-type multidru 98.0 2.1E-05 4.6E-10 82.5 9.3 142 16-160 27-197 (293)
183 PRK13541 cytochrome c biogenes 98.0 1E-05 2.2E-10 79.8 6.4 143 17-161 23-184 (195)
184 KOG0952 DNA/RNA helicase MER3/ 98.0 2.5E-06 5.5E-11 98.0 2.3 232 2-234 909-1174(1230)
185 PRK05703 flhF flagellar biosyn 98.0 9.4E-05 2E-09 81.4 14.4 126 19-167 220-349 (424)
186 TIGR02868 CydC thiol reductant 98.0 1.5E-05 3.3E-10 91.2 8.1 142 16-159 357-528 (529)
187 cd00009 AAA The AAA+ (ATPases 98.0 0.00016 3.4E-09 66.7 13.5 48 9-57 6-55 (151)
188 PRK13540 cytochrome c biogenes 98.0 2.1E-05 4.5E-10 77.9 7.9 144 16-161 23-188 (200)
189 cd03232 ABC_PDR_domain2 The pl 98.0 1.3E-05 2.7E-10 78.9 6.1 130 16-161 29-169 (192)
190 COG1124 DppF ABC-type dipeptid 97.9 3.2E-05 6.9E-10 76.4 8.7 66 100-171 142-210 (252)
191 COG4608 AppF ABC-type oligopep 97.9 3.3E-05 7.1E-10 77.9 8.7 140 16-171 35-178 (268)
192 cd03223 ABCD_peroxisomal_ALDP 97.9 5.1E-05 1.1E-09 72.7 9.8 119 16-160 23-148 (166)
193 TIGR01188 drrA daunorubicin re 97.9 1.3E-05 2.9E-10 84.7 6.3 144 16-161 15-185 (302)
194 PRK13538 cytochrome c biogenes 97.9 2E-05 4.4E-10 78.3 7.2 141 16-160 23-189 (204)
195 COG1119 ModF ABC-type molybden 97.9 4.4E-05 9.6E-10 75.5 9.2 144 16-160 53-233 (257)
196 COG1116 TauB ABC-type nitrate/ 97.9 0.00014 3E-09 72.5 12.6 137 16-163 25-194 (248)
197 PRK13537 nodulation ABC transp 97.9 1.7E-05 3.8E-10 83.8 6.6 144 16-161 29-199 (306)
198 cd03231 ABC_CcmA_heme_exporter 97.9 3.3E-05 7.1E-10 76.6 8.1 142 16-159 22-184 (201)
199 KOG0392 SNF2 family DNA-depend 97.9 0.00047 1E-08 80.9 18.3 116 214-351 1341-1458(1549)
200 PRK12726 flagellar biosynthesi 97.9 9.6E-05 2.1E-09 78.6 11.9 131 18-169 204-336 (407)
201 PRK14974 cell division protein 97.9 0.00013 2.9E-09 77.4 12.9 124 20-163 140-267 (336)
202 cd03269 ABC_putative_ATPase Th 97.9 1.4E-05 2.9E-10 79.9 5.2 63 97-160 126-188 (210)
203 COG1136 SalX ABC-type antimicr 97.9 4.1E-05 8.9E-10 75.9 8.4 141 16-159 27-202 (226)
204 PRK10536 hypothetical protein; 97.9 2.1E-05 4.7E-10 79.3 6.4 57 4-60 58-115 (262)
205 TIGR01447 recD exodeoxyribonuc 97.9 9E-05 1.9E-09 84.7 12.1 135 8-157 148-293 (586)
206 PF13245 AAA_19: Part of AAA d 97.9 4.4E-05 9.4E-10 62.7 6.9 54 16-69 6-62 (76)
207 PRK10875 recD exonuclease V su 97.9 9.1E-05 2E-09 84.9 12.0 135 8-157 155-299 (615)
208 PF02562 PhoH: PhoH-like prote 97.9 3.2E-05 6.8E-10 76.0 7.1 135 5-159 4-155 (205)
209 PRK13539 cytochrome c biogenes 97.9 2.6E-05 5.6E-10 77.7 6.6 142 16-161 24-188 (207)
210 TIGR01189 ccmA heme ABC export 97.9 5E-05 1.1E-09 75.0 8.6 139 17-160 23-187 (198)
211 PF00176 SNF2_N: SNF2 family N 97.9 4.7E-05 1E-09 80.1 8.8 133 18-161 23-173 (299)
212 TIGR00960 3a0501s02 Type II (G 97.9 4.5E-05 9.8E-10 76.4 8.3 62 98-160 137-198 (216)
213 TIGR03608 L_ocin_972_ABC putat 97.8 1.9E-05 4.2E-10 78.5 5.5 64 97-161 132-195 (206)
214 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.8 1.4E-05 3E-10 80.3 4.5 63 98-161 139-202 (218)
215 TIGR01166 cbiO cobalt transpor 97.8 0.0002 4.3E-09 70.3 12.6 64 97-161 125-188 (190)
216 COG2884 FtsE Predicted ATPase 97.8 3.4E-05 7.4E-10 73.1 6.6 144 16-168 24-203 (223)
217 cd03226 ABC_cobalt_CbiO_domain 97.8 6.4E-05 1.4E-09 74.7 9.1 140 16-160 22-186 (205)
218 PRK13536 nodulation factor exp 97.8 1.8E-05 3.8E-10 84.9 5.3 145 16-161 63-233 (340)
219 PRK12901 secA preprotein trans 97.8 0.00012 2.7E-09 85.6 12.3 167 152-347 565-741 (1112)
220 KOG0058 Peptide exporter, ABC 97.8 5.9E-05 1.3E-09 85.0 9.3 147 12-160 486-663 (716)
221 PF06862 DUF1253: Protein of u 97.8 0.0033 7.1E-08 68.6 22.3 232 94-351 131-419 (442)
222 cd03262 ABC_HisP_GlnQ_permease 97.8 0.00022 4.8E-09 71.3 12.6 64 96-160 132-195 (213)
223 COG4152 ABC-type uncharacteriz 97.8 4.3E-05 9.3E-10 75.2 6.9 144 16-160 24-190 (300)
224 TIGR01448 recD_rel helicase, p 97.8 0.00017 3.6E-09 84.9 13.1 122 5-158 323-451 (720)
225 cd03217 ABC_FeS_Assembly ABC-t 97.8 0.00016 3.5E-09 71.5 10.9 134 16-160 22-164 (200)
226 PRK13543 cytochrome c biogenes 97.8 8.7E-05 1.9E-09 74.3 9.0 142 16-160 33-197 (214)
227 cd03237 ABC_RNaseL_inhibitor_d 97.8 6.2E-05 1.4E-09 77.0 8.1 137 17-160 22-176 (246)
228 cd03268 ABC_BcrA_bacitracin_re 97.8 4.5E-05 9.7E-10 76.0 6.8 142 16-160 22-186 (208)
229 cd03225 ABC_cobalt_CbiO_domain 97.8 5.7E-05 1.2E-09 75.4 7.5 64 96-160 131-194 (211)
230 PF09848 DUF2075: Uncharacteri 97.8 8.9E-05 1.9E-09 80.1 9.5 94 21-132 2-97 (352)
231 PRK14721 flhF flagellar biosyn 97.8 0.00028 6.1E-09 76.9 13.2 127 18-167 189-318 (420)
232 TIGR03771 anch_rpt_ABC anchore 97.8 0.00028 6E-09 71.2 12.4 64 97-161 111-174 (223)
233 TIGR02673 FtsE cell division A 97.8 2.7E-05 5.8E-10 77.9 5.0 62 98-160 136-197 (214)
234 cd03258 ABC_MetN_methionine_tr 97.8 3.6E-05 7.8E-10 78.1 6.0 70 97-169 138-208 (233)
235 cd03261 ABC_Org_Solvent_Resist 97.8 3.1E-05 6.7E-10 78.8 5.4 63 97-160 134-197 (235)
236 TIGR03522 GldA_ABC_ATP gliding 97.8 2.7E-05 5.8E-10 82.3 5.1 142 17-161 25-193 (301)
237 cd03265 ABC_DrrA DrrA is the A 97.8 4.3E-05 9.2E-10 76.9 6.4 64 96-160 128-192 (220)
238 cd03266 ABC_NatA_sodium_export 97.8 4.2E-05 9.2E-10 76.8 6.3 62 98-160 135-196 (218)
239 cd03224 ABC_TM1139_LivF_branch 97.8 2.6E-05 5.6E-10 78.5 4.7 63 97-160 130-192 (222)
240 COG1134 TagH ABC-type polysacc 97.8 9.2E-05 2E-09 73.3 8.3 151 17-171 50-216 (249)
241 smart00382 AAA ATPases associa 97.8 0.00017 3.8E-09 65.7 9.9 37 20-57 2-38 (148)
242 PRK09544 znuC high-affinity zi 97.8 5.2E-05 1.1E-09 77.9 7.0 138 17-161 27-182 (251)
243 cd03235 ABC_Metallic_Cations A 97.8 0.00022 4.7E-09 71.3 11.3 64 97-161 130-193 (213)
244 cd03218 ABC_YhbG The ABC trans 97.8 2.6E-05 5.7E-10 79.1 4.7 64 96-160 130-193 (232)
245 COG1117 PstB ABC-type phosphat 97.7 4.4E-05 9.6E-10 73.7 5.8 60 100-161 150-209 (253)
246 cd03256 ABC_PhnC_transporter A 97.7 5.5E-05 1.2E-09 77.2 7.0 64 97-161 142-206 (241)
247 PRK13635 cbiO cobalt transport 97.7 8.4E-05 1.8E-09 77.6 8.5 65 96-161 137-202 (279)
248 cd03263 ABC_subfamily_A The AB 97.7 5.7E-05 1.2E-09 76.0 6.9 62 97-160 131-192 (220)
249 cd03369 ABCC_NFT1 Domain 2 of 97.7 7.6E-05 1.6E-09 74.3 7.7 143 16-161 30-185 (207)
250 TIGR01288 nodI ATP-binding ABC 97.7 4.9E-05 1.1E-09 80.4 6.7 64 96-160 132-195 (303)
251 PRK10908 cell division protein 97.7 2.9E-05 6.2E-10 78.2 4.7 64 97-161 135-198 (222)
252 TIGR02315 ABC_phnC phosphonate 97.7 5.1E-05 1.1E-09 77.5 6.6 64 97-161 143-207 (243)
253 COG1135 AbcC ABC-type metal io 97.7 5.8E-05 1.2E-09 77.0 6.7 143 16-161 28-203 (339)
254 TIGR03740 galliderm_ABC gallid 97.7 8.8E-05 1.9E-09 74.8 8.1 140 17-160 23-184 (223)
255 TIGR03864 PQQ_ABC_ATP ABC tran 97.7 4.5E-05 9.7E-10 77.6 6.0 65 96-161 129-194 (236)
256 cd03292 ABC_FtsE_transporter F 97.7 4E-05 8.6E-10 76.7 5.4 62 98-160 135-196 (214)
257 PRK13644 cbiO cobalt transport 97.7 6.1E-05 1.3E-09 78.4 7.0 66 95-161 132-197 (274)
258 PRK13634 cbiO cobalt transport 97.7 5.9E-05 1.3E-09 79.2 6.7 72 95-169 141-213 (290)
259 PRK13650 cbiO cobalt transport 97.7 9E-05 2E-09 77.4 8.0 145 16-161 29-202 (279)
260 PRK09493 glnQ glutamine ABC tr 97.7 4.8E-05 1E-09 77.6 5.7 63 98-161 135-197 (240)
261 cd03251 ABCC_MsbA MsbA is an e 97.7 0.00018 3.9E-09 73.0 10.0 63 97-161 136-198 (234)
262 cd03248 ABCC_TAP TAP, the Tran 97.7 0.00018 3.8E-09 72.7 9.9 63 97-161 148-210 (226)
263 cd03254 ABCC_Glucan_exporter_l 97.7 6.5E-05 1.4E-09 76.0 6.6 63 97-161 137-199 (229)
264 cd03293 ABC_NrtD_SsuB_transpor 97.7 7.4E-05 1.6E-09 75.1 7.0 138 16-160 26-192 (220)
265 TIGR01277 thiQ thiamine ABC tr 97.7 0.00011 2.4E-09 73.5 8.1 63 97-160 126-189 (213)
266 PRK06526 transposase; Provisio 97.7 0.00023 4.9E-09 73.0 10.5 118 16-171 94-211 (254)
267 PRK13643 cbiO cobalt transport 97.7 6.9E-05 1.5E-09 78.6 6.9 65 95-160 140-204 (288)
268 PRK13640 cbiO cobalt transport 97.7 9.7E-05 2.1E-09 77.3 8.0 145 16-161 29-205 (282)
269 PRK13826 Dtr system oriT relax 97.7 0.0085 1.8E-07 72.6 25.0 124 4-159 380-505 (1102)
270 PRK13631 cbiO cobalt transport 97.7 8.1E-05 1.8E-09 79.2 7.3 64 97-161 174-237 (320)
271 PRK13546 teichoic acids export 97.7 0.00046 9.9E-09 71.4 12.7 142 16-160 46-203 (264)
272 cd03219 ABC_Mj1267_LivG_branch 97.7 0.00011 2.4E-09 74.7 7.9 63 97-160 141-203 (236)
273 PRK15177 Vi polysaccharide exp 97.7 0.00011 2.4E-09 73.4 7.6 143 16-160 9-163 (213)
274 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.7 0.00039 8.4E-09 70.1 11.6 136 16-160 44-202 (224)
275 PRK04296 thymidine kinase; Pro 97.7 0.0005 1.1E-08 67.4 12.0 111 20-159 2-115 (190)
276 PRK11174 cysteine/glutathione 97.7 5.3E-05 1.2E-09 87.9 6.0 60 100-161 486-545 (588)
277 TIGR02857 CydD thiol reductant 97.7 6.4E-05 1.4E-09 86.1 6.5 143 16-160 344-517 (529)
278 TIGR03410 urea_trans_UrtE urea 97.7 5.4E-05 1.2E-09 76.7 5.2 64 97-161 129-193 (230)
279 TIGR01186 proV glycine betaine 97.7 4E-05 8.8E-10 82.5 4.5 62 99-161 129-191 (363)
280 PRK12724 flagellar biosynthesi 97.6 0.00064 1.4E-08 73.5 13.5 121 20-165 223-349 (432)
281 TIGR03375 type_I_sec_LssB type 97.6 0.00022 4.9E-09 84.4 11.2 138 16-161 487-661 (694)
282 cd03301 ABC_MalK_N The N-termi 97.6 3.6E-05 7.8E-10 77.0 3.8 64 96-160 127-191 (213)
283 PRK10584 putative ABC transpor 97.6 0.0005 1.1E-08 69.5 12.2 64 97-161 144-208 (228)
284 TIGR02211 LolD_lipo_ex lipopro 97.6 0.00048 1.1E-08 69.2 12.0 64 97-161 139-203 (221)
285 cd03259 ABC_Carb_Solutes_like 97.6 0.00011 2.4E-09 73.4 7.3 63 97-160 128-191 (213)
286 PRK13647 cbiO cobalt transport 97.6 0.0001 2.2E-09 76.7 7.2 64 97-161 136-199 (274)
287 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.6 0.00021 4.7E-09 72.7 9.4 63 97-161 137-199 (238)
288 cd03298 ABC_ThiQ_thiamine_tran 97.6 0.00014 3E-09 72.7 7.8 63 97-160 126-189 (211)
289 PRK11231 fecE iron-dicitrate t 97.6 8.6E-05 1.9E-09 76.5 6.4 144 16-161 24-199 (255)
290 PRK06731 flhF flagellar biosyn 97.6 0.00076 1.6E-08 69.5 13.3 124 20-165 75-201 (270)
291 cd03245 ABCC_bacteriocin_expor 97.6 9.4E-05 2E-09 74.3 6.5 62 98-161 139-200 (220)
292 PRK13633 cobalt transporter AT 97.6 0.00012 2.5E-09 76.7 7.4 65 96-161 141-206 (280)
293 cd03260 ABC_PstB_phosphate_tra 97.6 0.00017 3.7E-09 72.9 8.4 61 98-160 140-200 (227)
294 COG4988 CydD ABC-type transpor 97.6 0.00034 7.3E-09 77.4 11.2 142 16-160 343-515 (559)
295 cd03300 ABC_PotA_N PotA is an 97.6 5E-05 1.1E-09 77.0 4.5 63 97-160 128-191 (232)
296 PRK14723 flhF flagellar biosyn 97.6 0.00043 9.3E-09 80.3 12.5 125 19-166 184-311 (767)
297 COG3839 MalK ABC-type sugar tr 97.6 3.1E-05 6.6E-10 81.5 3.0 142 16-158 25-192 (338)
298 PRK09536 btuD corrinoid ABC tr 97.6 7.3E-05 1.6E-09 81.6 6.1 144 17-161 26-200 (402)
299 PRK10416 signal recognition pa 97.6 0.0013 2.9E-08 69.6 15.4 127 19-164 113-248 (318)
300 PRK12727 flagellar biosynthesi 97.6 0.00052 1.1E-08 76.1 12.6 126 17-166 347-475 (559)
301 PRK13648 cbiO cobalt transport 97.6 0.00067 1.5E-08 70.5 13.0 65 96-161 139-204 (269)
302 PRK11247 ssuB aliphatic sulfon 97.6 6.1E-05 1.3E-09 77.6 5.1 138 16-161 34-195 (257)
303 cd03253 ABCC_ATM1_transporter 97.6 0.00017 3.8E-09 73.3 8.3 63 97-161 135-197 (236)
304 PRK11629 lolD lipoprotein tran 97.6 0.00053 1.1E-08 69.6 11.8 63 98-161 144-207 (233)
305 PRK11614 livF leucine/isoleuci 97.6 6E-05 1.3E-09 76.8 4.9 68 99-169 137-204 (237)
306 cd03296 ABC_CysA_sulfate_impor 97.6 0.0001 2.2E-09 75.2 6.6 64 97-161 134-198 (239)
307 PRK15112 antimicrobial peptide 97.6 0.0005 1.1E-08 71.3 11.8 70 97-169 147-217 (267)
308 COG1118 CysA ABC-type sulfate/ 97.6 0.0002 4.4E-09 72.9 8.4 147 12-160 20-198 (345)
309 TIGR03411 urea_trans_UrtD urea 97.6 0.00014 3.1E-09 74.2 7.5 64 96-161 140-203 (242)
310 PRK15056 manganese/iron transp 97.6 0.00052 1.1E-08 71.4 11.7 63 97-160 140-202 (272)
311 cd03252 ABCC_Hemolysin The ABC 97.6 0.00017 3.6E-09 73.5 7.8 63 97-161 136-198 (237)
312 PRK11124 artP arginine transpo 97.6 0.00011 2.4E-09 75.0 6.6 63 97-160 139-201 (242)
313 TIGR02314 ABC_MetN D-methionin 97.6 6.7E-05 1.4E-09 80.4 5.1 68 99-169 140-208 (343)
314 PRK13652 cbiO cobalt transport 97.6 0.0001 2.2E-09 76.9 6.3 66 95-161 133-199 (277)
315 PRK10247 putative ABC transpor 97.6 0.00021 4.6E-09 72.1 8.5 66 95-161 133-199 (225)
316 PRK10895 lipopolysaccharide AB 97.6 0.00011 2.4E-09 75.0 6.4 63 97-160 135-197 (241)
317 TIGR02324 CP_lyasePhnL phospho 97.6 0.00097 2.1E-08 67.2 13.2 63 97-160 147-209 (224)
318 TIGR02982 heterocyst_DevA ABC 97.6 0.00018 3.9E-09 72.3 7.9 63 98-161 140-203 (220)
319 TIGR01184 ntrCD nitrate transp 97.6 0.00062 1.3E-08 69.0 11.7 64 97-161 112-176 (230)
320 PRK13649 cbiO cobalt transport 97.6 0.0008 1.7E-08 70.3 12.9 64 96-160 142-205 (280)
321 PRK11308 dppF dipeptide transp 97.6 0.00011 2.4E-09 78.4 6.4 63 98-161 153-216 (327)
322 TIGR00968 3a0106s01 sulfate AB 97.6 5.7E-05 1.2E-09 76.9 4.1 63 97-160 128-191 (237)
323 cd03294 ABC_Pro_Gly_Bertaine T 97.6 0.00055 1.2E-08 71.1 11.5 63 97-160 158-221 (269)
324 cd03264 ABC_drug_resistance_li 97.6 0.00013 2.8E-09 72.9 6.5 63 96-160 127-189 (211)
325 cd03244 ABCC_MRP_domain2 Domai 97.6 0.00017 3.6E-09 72.6 7.4 63 97-161 137-199 (221)
326 COG0396 sufC Cysteine desulfur 97.6 0.00014 3.1E-09 71.1 6.4 51 115-169 160-210 (251)
327 PRK13646 cbiO cobalt transport 97.6 0.00084 1.8E-08 70.4 12.9 66 95-161 141-207 (286)
328 cd03234 ABCG_White The White s 97.6 0.00026 5.7E-09 71.5 8.7 64 96-160 140-203 (226)
329 PRK11153 metN DL-methionine tr 97.6 8.2E-05 1.8E-09 80.0 5.2 63 98-161 139-202 (343)
330 cd03250 ABCC_MRP_domain1 Domai 97.6 0.00051 1.1E-08 68.2 10.6 141 16-161 27-189 (204)
331 PRK13657 cyclic beta-1,2-gluca 97.6 9.9E-05 2.2E-09 85.6 6.3 59 100-160 472-530 (588)
332 PRK11264 putative amino-acid A 97.6 0.00011 2.4E-09 75.4 5.9 63 97-160 142-204 (250)
333 cd03295 ABC_OpuCA_Osmoprotecti 97.5 7.8E-05 1.7E-09 76.2 4.7 63 97-160 133-196 (242)
334 PRK13632 cbiO cobalt transport 97.5 0.00017 3.7E-09 75.0 7.3 65 96-161 139-204 (271)
335 PRK13642 cbiO cobalt transport 97.5 0.00017 3.8E-09 75.2 7.5 65 96-161 137-202 (277)
336 PRK13639 cbiO cobalt transport 97.5 0.00014 3E-09 75.8 6.7 64 97-161 135-198 (275)
337 COG1132 MdlB ABC-type multidru 97.5 0.00012 2.5E-09 84.7 6.7 142 16-160 351-524 (567)
338 PRK11650 ugpC glycerol-3-phosp 97.5 5E-05 1.1E-09 81.9 3.4 61 99-160 134-195 (356)
339 COG3842 PotA ABC-type spermidi 97.5 4.2E-05 9.1E-10 80.9 2.7 143 16-159 27-196 (352)
340 PRK10771 thiQ thiamine transpo 97.5 0.0001 2.2E-09 74.8 5.4 64 96-160 126-190 (232)
341 TIGR00972 3a0107s01c2 phosphat 97.5 0.0001 2.3E-09 75.5 5.5 63 96-160 141-203 (247)
342 PRK13545 tagH teichoic acids e 97.5 0.00067 1.5E-08 75.6 12.1 137 16-160 46-203 (549)
343 PRK10575 iron-hydroxamate tran 97.5 0.00014 2.9E-09 75.5 6.4 62 99-161 147-209 (265)
344 cd03297 ABC_ModC_molybdenum_tr 97.5 9.7E-05 2.1E-09 73.9 5.2 64 96-160 128-192 (214)
345 PRK14250 phosphate ABC transpo 97.5 0.00027 6E-09 72.1 8.6 64 97-161 129-193 (241)
346 PRK13651 cobalt transporter AT 97.5 0.00019 4.2E-09 75.8 7.6 65 96-161 162-226 (305)
347 PRK11176 lipid transporter ATP 97.5 0.00055 1.2E-08 79.4 12.1 144 16-161 365-540 (582)
348 PRK11248 tauB taurine transpor 97.5 0.00037 7.9E-09 71.8 9.5 144 16-169 23-196 (255)
349 PRK10619 histidine/lysine/argi 97.5 0.001 2.3E-08 68.5 12.9 63 97-160 150-212 (257)
350 PRK13637 cbiO cobalt transport 97.5 0.0011 2.5E-08 69.4 13.3 65 95-160 140-205 (287)
351 PRK11831 putative ABC transpor 97.5 0.00015 3.3E-09 75.3 6.7 63 97-160 141-204 (269)
352 COG3840 ThiQ ABC-type thiamine 97.5 0.00017 3.6E-09 68.0 6.1 145 16-161 21-191 (231)
353 TIGR03873 F420-0_ABC_ATP propo 97.5 0.00015 3.2E-09 74.8 6.4 65 96-161 134-198 (256)
354 COG2274 SunT ABC-type bacterio 97.5 0.00037 7.9E-09 81.2 10.2 138 16-161 495-669 (709)
355 TIGR02768 TraA_Ti Ti-type conj 97.5 0.00094 2E-08 78.9 13.8 122 4-157 351-474 (744)
356 PRK13548 hmuV hemin importer A 97.5 0.00017 3.8E-09 74.3 6.8 64 96-160 131-201 (258)
357 PRK10789 putative multidrug tr 97.5 0.00014 2.9E-09 84.1 6.5 60 100-161 452-511 (569)
358 TIGR02770 nickel_nikD nickel i 97.5 0.00077 1.7E-08 68.3 11.3 64 96-160 122-186 (230)
359 PRK11144 modC molybdate transp 97.5 9.2E-05 2E-09 79.9 4.8 64 96-160 125-189 (352)
360 PRK11160 cysteine/glutathione 97.5 0.0004 8.8E-09 80.2 10.4 144 16-161 362-535 (574)
361 COG4987 CydC ABC-type transpor 97.5 0.00024 5.2E-09 77.5 7.8 142 16-161 360-534 (573)
362 TIGR03005 ectoine_ehuA ectoine 97.5 9E-05 2E-09 76.2 4.5 62 99-161 146-208 (252)
363 KOG1803 DNA helicase [Replicat 97.5 0.00025 5.5E-09 78.0 7.9 63 6-69 186-249 (649)
364 PRK13636 cbiO cobalt transport 97.5 0.00027 5.8E-09 74.0 8.0 66 95-161 137-203 (283)
365 cd03236 ABC_RNaseL_inhibitor_d 97.5 0.0011 2.3E-08 68.3 12.2 62 98-160 138-199 (255)
366 cd03267 ABC_NatA_like Similar 97.5 0.00013 2.8E-09 74.2 5.4 64 96-160 150-214 (236)
367 PRK13638 cbiO cobalt transport 97.5 0.00011 2.4E-09 76.4 5.0 65 96-161 133-197 (271)
368 PRK11300 livG leucine/isoleuci 97.5 0.0002 4.4E-09 73.7 6.8 62 98-160 152-214 (255)
369 PRK06995 flhF flagellar biosyn 97.5 0.0011 2.3E-08 73.7 12.7 126 18-166 254-382 (484)
370 PRK10070 glycine betaine trans 97.5 0.00071 1.5E-08 73.9 11.2 64 97-161 162-226 (400)
371 PRK09452 potA putrescine/sperm 97.5 6.3E-05 1.4E-09 81.5 3.0 61 99-160 144-205 (375)
372 PRK08181 transposase; Validate 97.5 0.0014 3E-08 67.6 12.7 118 16-171 102-219 (269)
373 cd03257 ABC_NikE_OppD_transpor 97.5 0.00047 1E-08 69.6 9.2 63 97-160 143-206 (228)
374 PF13086 AAA_11: AAA domain; P 97.5 0.00033 7.2E-09 70.5 8.0 66 6-71 2-75 (236)
375 PRK13641 cbiO cobalt transport 97.5 0.00021 4.4E-09 75.0 6.5 65 95-160 141-205 (287)
376 TIGR03265 PhnT2 putative 2-ami 97.5 0.001 2.2E-08 71.8 11.9 64 97-161 132-196 (353)
377 cd03289 ABCC_CFTR2 The CFTR su 97.4 0.00036 7.9E-09 72.5 8.2 60 100-161 139-198 (275)
378 PRK15079 oligopeptide ABC tran 97.4 0.00015 3.2E-09 77.6 5.4 63 98-161 160-223 (331)
379 TIGR01842 type_I_sec_PrtD type 97.4 0.00019 4.1E-09 82.4 6.6 62 99-161 454-515 (544)
380 PRK10790 putative multidrug tr 97.4 0.00063 1.4E-08 79.0 11.0 59 100-160 477-535 (592)
381 cd03291 ABCC_CFTR1 The CFTR su 97.4 0.0011 2.4E-08 69.1 11.8 139 17-161 60-220 (282)
382 PRK10418 nikD nickel transport 97.4 0.0006 1.3E-08 70.2 9.7 64 96-160 137-201 (254)
383 TIGR02760 TraI_TIGR conjugativ 97.4 0.0091 2E-07 77.4 22.1 246 3-272 427-685 (1960)
384 TIGR02142 modC_ABC molybdenum 97.4 0.00012 2.5E-09 79.3 4.4 63 98-161 130-193 (354)
385 PRK11747 dinG ATP-dependent DN 97.4 0.0009 2E-08 78.6 12.2 135 194-343 517-671 (697)
386 TIGR00958 3a01208 Conjugate Tr 97.4 0.00073 1.6E-08 80.1 11.5 142 16-161 503-675 (711)
387 cd03299 ABC_ModC_like Archeal 97.4 0.00012 2.5E-09 74.5 4.2 63 97-160 127-190 (235)
388 TIGR02203 MsbA_lipidA lipid A 97.4 0.001 2.2E-08 77.0 12.5 59 100-160 470-528 (571)
389 PRK11701 phnK phosphonate C-P 97.4 0.0015 3.1E-08 67.5 12.4 64 96-160 148-212 (258)
390 PRK10938 putative molybdenum t 97.4 0.00027 5.8E-09 80.1 7.5 143 16-160 25-195 (490)
391 COG4107 PhnK ABC-type phosphon 97.4 0.004 8.6E-08 58.3 13.6 182 16-203 28-254 (258)
392 PRK15439 autoinducer 2 ABC tra 97.4 0.00018 3.8E-09 81.9 6.0 142 17-160 34-200 (510)
393 COG4133 CcmA ABC-type transpor 97.4 0.00053 1.1E-08 65.1 8.0 140 16-157 24-187 (209)
394 TIGR03258 PhnT 2-aminoethylpho 97.4 6.4E-05 1.4E-09 81.1 2.2 64 97-161 135-200 (362)
395 PRK07952 DNA replication prote 97.4 0.0026 5.6E-08 64.7 13.6 116 21-171 100-215 (244)
396 PRK11432 fbpC ferric transport 97.4 7.5E-05 1.6E-09 80.4 2.6 62 98-160 135-197 (351)
397 TIGR02204 MsbA_rel ABC transpo 97.4 0.00026 5.5E-09 82.0 7.2 60 100-161 477-536 (576)
398 TIGR03415 ABC_choXWV_ATP choli 97.4 0.00035 7.5E-09 75.8 7.7 63 98-161 163-226 (382)
399 PRK10253 iron-enterobactin tra 97.4 0.00029 6.2E-09 73.0 6.8 65 96-161 140-205 (265)
400 PRK14247 phosphate ABC transpo 97.4 0.00025 5.3E-09 72.8 6.2 64 96-161 143-206 (250)
401 cd03288 ABCC_SUR2 The SUR doma 97.4 0.00046 1E-08 71.1 8.3 62 98-161 155-216 (257)
402 TIGR02769 nickel_nikE nickel i 97.4 0.0013 2.7E-08 68.2 11.6 63 97-160 148-211 (265)
403 PRK14241 phosphate transporter 97.4 0.0017 3.7E-08 67.0 12.4 63 96-160 145-207 (258)
404 PRK11000 maltose/maltodextrin 97.4 0.00065 1.4E-08 73.8 9.5 64 97-161 131-195 (369)
405 TIGR01192 chvA glucan exporter 97.4 0.00056 1.2E-08 79.2 9.4 59 100-160 472-530 (585)
406 PRK10851 sulfate/thiosulfate t 97.4 0.0012 2.6E-08 71.2 11.2 63 97-160 134-197 (353)
407 PRK14273 phosphate ABC transpo 97.4 0.00025 5.3E-09 73.0 5.7 64 96-161 147-210 (254)
408 COG4604 CeuD ABC-type enteroch 97.4 0.002 4.4E-08 61.7 11.1 149 16-171 23-204 (252)
409 PRK10522 multidrug transporter 97.4 0.0013 2.7E-08 75.7 12.0 60 100-160 450-510 (547)
410 PRK09984 phosphonate/organopho 97.4 0.00029 6.2E-09 72.9 6.1 65 96-161 149-214 (262)
411 PRK10419 nikE nickel transport 97.4 0.0019 4.2E-08 67.0 12.3 64 96-160 148-212 (268)
412 TIGR03015 pepcterm_ATPase puta 97.4 0.0011 2.3E-08 68.8 10.4 55 20-75 43-97 (269)
413 TIGR03797 NHPM_micro_ABC2 NHPM 97.4 0.00089 1.9E-08 79.2 11.0 57 100-160 589-645 (686)
414 TIGR02323 CP_lyasePhnK phospho 97.3 0.00089 1.9E-08 68.8 9.6 64 96-160 145-209 (253)
415 TIGR01193 bacteriocin_ABC ABC- 97.3 0.00023 5E-09 84.4 6.0 59 100-161 612-670 (708)
416 COG3845 ABC-type uncharacteriz 97.3 0.0018 3.9E-08 70.2 11.9 145 16-161 26-201 (501)
417 PRK11607 potG putrescine trans 97.3 9.2E-05 2E-09 80.4 2.2 63 97-160 147-210 (377)
418 CHL00131 ycf16 sulfate ABC tra 97.3 0.00027 5.9E-09 72.6 5.5 61 100-161 152-212 (252)
419 PRK14259 phosphate ABC transpo 97.3 0.00079 1.7E-08 69.9 9.0 62 97-160 152-213 (269)
420 TIGR01846 type_I_sec_HlyB type 97.3 0.0014 3E-08 77.7 12.1 60 100-161 594-653 (694)
421 TIGR01978 sufC FeS assembly AT 97.3 0.00028 6.2E-09 72.0 5.5 60 100-160 145-204 (243)
422 COG1125 OpuBA ABC-type proline 97.3 0.00051 1.1E-08 68.3 6.9 35 16-50 23-57 (309)
423 PRK14265 phosphate ABC transpo 97.3 0.00035 7.6E-09 72.7 6.1 62 97-160 159-220 (274)
424 TIGR03796 NHPM_micro_ABC1 NHPM 97.3 0.00028 6.1E-09 83.7 6.1 58 100-161 616-673 (710)
425 PRK09700 D-allose transporter 97.3 0.00039 8.5E-09 79.2 7.0 64 96-160 142-205 (510)
426 cd03290 ABCC_SUR1_N The SUR do 97.3 0.00058 1.3E-08 68.5 7.4 64 97-161 138-203 (218)
427 PRK09580 sufC cysteine desulfu 97.3 0.0023 4.9E-08 65.6 11.9 61 100-161 146-206 (248)
428 TIGR00064 ftsY signal recognit 97.3 0.0027 5.9E-08 65.8 12.5 127 20-165 72-207 (272)
429 PRK13645 cbiO cobalt transport 97.3 0.00068 1.5E-08 71.2 8.2 65 96-161 147-212 (289)
430 PRK14260 phosphate ABC transpo 97.3 0.0028 6.1E-08 65.4 12.6 63 96-160 147-209 (259)
431 PRK10762 D-ribose transporter 97.3 0.0003 6.5E-09 79.9 5.8 71 96-169 138-208 (501)
432 TIGR01194 cyc_pep_trnsptr cycl 97.3 0.00066 1.4E-08 78.1 8.7 142 16-160 364-531 (555)
433 PRK11022 dppD dipeptide transp 97.3 0.00085 1.8E-08 71.6 8.9 62 99-161 153-215 (326)
434 PRK09183 transposase/IS protei 97.3 0.0021 4.5E-08 66.2 11.4 39 17-56 99-137 (259)
435 PRK14267 phosphate ABC transpo 97.3 0.00033 7.2E-09 72.0 5.5 61 98-160 148-208 (253)
436 PF05970 PIF1: PIF1-like helic 97.3 0.001 2.2E-08 72.2 9.6 112 7-139 3-122 (364)
437 PRK09473 oppD oligopeptide tra 97.3 0.0024 5.3E-08 68.2 12.3 62 99-161 161-223 (330)
438 PRK10982 galactose/methyl gala 97.3 0.00025 5.3E-09 80.4 4.8 63 97-160 132-194 (491)
439 PRK13409 putative ATPase RIL; 97.3 0.0017 3.8E-08 74.8 11.7 65 95-161 208-272 (590)
440 PRK14257 phosphate ABC transpo 97.3 0.0031 6.8E-08 67.3 12.9 63 96-160 222-284 (329)
441 PRK14262 phosphate ABC transpo 97.3 0.00031 6.7E-09 72.1 5.1 62 97-160 144-205 (250)
442 PRK14269 phosphate ABC transpo 97.3 0.00051 1.1E-08 70.3 6.6 63 97-161 140-202 (246)
443 KOG1002 Nucleotide excision re 97.3 0.0056 1.2E-07 65.7 14.3 119 4-128 183-327 (791)
444 COG0488 Uup ATPase components 97.3 0.00063 1.4E-08 76.6 7.8 138 16-159 344-495 (530)
445 PRK14251 phosphate ABC transpo 97.3 0.0029 6.2E-08 65.0 12.2 62 97-160 145-206 (251)
446 PRK13547 hmuV hemin importer A 97.3 0.00074 1.6E-08 70.2 7.8 64 97-161 143-216 (272)
447 cd03239 ABC_SMC_head The struc 97.3 0.0014 3.1E-08 63.4 9.3 125 22-160 24-158 (178)
448 PRK14275 phosphate ABC transpo 97.2 0.0027 5.9E-08 66.5 12.1 70 96-169 179-248 (286)
449 PLN03232 ABC transporter C fam 97.2 0.00032 6.9E-09 89.4 6.0 143 16-161 1258-1431(1495)
450 PF13173 AAA_14: AAA domain 97.2 0.0017 3.7E-08 59.2 9.3 27 19-45 1-27 (128)
451 PTZ00243 ABC transporter; Prov 97.2 0.0005 1.1E-08 87.7 7.6 142 16-160 1332-1505(1560)
452 PRK06893 DNA replication initi 97.2 0.0022 4.7E-08 64.9 10.9 26 19-44 38-63 (229)
453 PRK13889 conjugal transfer rel 97.2 0.0026 5.6E-08 76.5 12.9 124 4-159 345-470 (988)
454 TIGR02633 xylG D-xylose ABC tr 97.2 0.0029 6.3E-08 71.9 13.1 71 95-168 399-469 (500)
455 COG4178 ABC-type uncharacteriz 97.2 0.00043 9.3E-09 77.8 6.0 138 16-161 415-575 (604)
456 cd01120 RecA-like_NTPases RecA 97.2 0.0038 8.3E-08 58.8 11.9 34 22-56 1-34 (165)
457 PF05729 NACHT: NACHT domain 97.2 0.0012 2.6E-08 62.5 8.4 58 119-176 83-146 (166)
458 PRK14236 phosphate transporter 97.2 0.0011 2.4E-08 68.9 8.8 64 96-161 165-228 (272)
459 PRK10744 pstB phosphate transp 97.2 0.00041 8.9E-09 71.7 5.5 62 97-160 154-215 (260)
460 COG4618 ArpD ABC-type protease 97.2 0.00069 1.5E-08 73.4 7.2 60 100-160 473-532 (580)
461 TIGR00957 MRP_assoc_pro multi 97.2 0.00055 1.2E-08 87.4 7.7 143 16-161 1308-1481(1522)
462 PRK08116 hypothetical protein; 97.2 0.00079 1.7E-08 69.7 7.5 116 20-170 114-230 (268)
463 PRK14270 phosphate ABC transpo 97.2 0.00063 1.4E-08 69.9 6.8 63 96-160 144-206 (251)
464 PRK11288 araG L-arabinose tran 97.2 0.0029 6.2E-08 72.0 12.6 66 94-160 391-456 (501)
465 PRK00771 signal recognition pa 97.2 0.0046 9.9E-08 68.2 13.6 121 20-161 95-218 (437)
466 PRK13549 xylose transporter AT 97.2 0.0005 1.1E-08 78.2 6.4 64 96-160 140-203 (506)
467 PRK14242 phosphate transporter 97.2 0.00036 7.8E-09 71.8 4.7 62 97-160 147-208 (253)
468 PRK14268 phosphate ABC transpo 97.2 0.00042 9.1E-09 71.5 5.2 63 96-160 151-213 (258)
469 COG1199 DinG Rad3-related DNA 97.2 0.0041 8.8E-08 73.2 14.1 137 195-343 462-614 (654)
470 PRK15439 autoinducer 2 ABC tra 97.2 0.0028 6.1E-08 72.2 12.3 65 95-160 399-463 (510)
471 PF05621 TniB: Bacterial TniB 97.2 0.003 6.5E-08 65.2 11.2 119 21-161 62-190 (302)
472 PRK11288 araG L-arabinose tran 97.2 0.00037 8.1E-09 79.1 5.2 63 97-160 138-200 (501)
473 PRK15093 antimicrobial peptide 97.2 0.0034 7.4E-08 67.2 12.2 62 99-161 158-220 (330)
474 PRK14261 phosphate ABC transpo 97.2 0.004 8.6E-08 64.0 12.3 62 97-160 147-208 (253)
475 PRK14272 phosphate ABC transpo 97.2 0.00043 9.4E-09 71.1 5.2 65 95-161 144-208 (252)
476 PRK03695 vitamin B12-transport 97.2 0.00066 1.4E-08 69.6 6.5 64 97-161 124-194 (248)
477 PRK14248 phosphate ABC transpo 97.2 0.0036 7.9E-08 64.9 12.0 64 96-161 161-224 (268)
478 PLN03130 ABC transporter C fam 97.2 0.00061 1.3E-08 87.1 7.4 143 16-161 1261-1434(1622)
479 COG4619 ABC-type uncharacteriz 97.2 0.0024 5.3E-08 59.5 9.2 144 16-160 25-194 (223)
480 COG0444 DppD ABC-type dipeptid 97.2 0.0032 7E-08 65.1 11.2 61 100-161 154-215 (316)
481 TIGR03499 FlhF flagellar biosy 97.2 0.0016 3.6E-08 67.9 9.4 86 19-126 193-281 (282)
482 PRK09700 D-allose transporter 97.2 0.00067 1.4E-08 77.3 7.0 65 95-160 405-469 (510)
483 PRK14249 phosphate ABC transpo 97.2 0.0012 2.5E-08 67.9 8.1 63 96-160 144-206 (251)
484 PRK06835 DNA replication prote 97.2 0.0016 3.5E-08 69.2 9.3 117 19-170 182-298 (329)
485 PF00005 ABC_tran: ABC transpo 97.2 4.8E-05 1E-09 70.2 -2.1 30 17-46 8-37 (137)
486 PRK14238 phosphate transporter 97.2 0.00099 2.1E-08 69.3 7.5 64 96-161 164-227 (271)
487 COG0410 LivF ABC-type branched 97.1 0.0043 9.3E-08 61.1 11.2 138 16-157 25-194 (237)
488 COG1123 ATPase components of v 97.1 0.0016 3.4E-08 72.5 9.2 70 101-174 431-501 (539)
489 PRK10867 signal recognition pa 97.1 0.0055 1.2E-07 67.4 13.4 124 21-161 101-226 (433)
490 PRK14264 phosphate ABC transpo 97.1 0.0049 1.1E-07 65.2 12.7 62 97-160 198-259 (305)
491 PRK08903 DnaA regulatory inact 97.1 0.004 8.6E-08 62.9 11.6 27 18-44 40-66 (227)
492 PRK13409 putative ATPase RIL; 97.1 0.0012 2.6E-08 76.1 8.6 141 17-160 362-514 (590)
493 cd01124 KaiC KaiC is a circadi 97.1 0.00092 2E-08 65.1 6.7 33 22-55 1-33 (187)
494 TIGR00954 3a01203 Peroxysomal 97.1 0.0024 5.2E-08 74.9 11.3 59 99-161 582-640 (659)
495 PRK15483 type III restriction- 97.1 0.0022 4.8E-08 75.9 10.7 48 21-68 60-108 (986)
496 COG1129 MglA ABC-type sugar tr 97.1 0.00084 1.8E-08 74.0 6.8 142 16-161 30-206 (500)
497 PRK14235 phosphate transporter 97.1 0.00069 1.5E-08 70.3 5.9 62 97-160 161-222 (267)
498 COG4525 TauB ABC-type taurine 97.1 0.0088 1.9E-07 57.3 12.6 145 11-165 22-198 (259)
499 COG4598 HisP ABC-type histidin 97.1 0.0065 1.4E-07 57.3 11.5 62 99-161 152-213 (256)
500 PRK14237 phosphate transporter 97.1 0.0013 2.7E-08 68.3 7.8 62 97-160 161-222 (267)
No 1
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-150 Score=1205.70 Aligned_cols=619 Identities=53% Similarity=0.867 Sum_probs=593.3
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceee
Q 005291 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (704)
Q Consensus 3 ~LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg 82 (704)
.|||++++++|+..+++++++||+|+||||||||+||+|.+.++...++|.|+||||++|.++|+||++|+++.+|+.||
T Consensus 49 ~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VG 128 (674)
T KOG0922|consen 49 SLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVG 128 (674)
T ss_pred cCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceee
Confidence 69999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred eeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCCh
Q 005291 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (704)
Q Consensus 83 ~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~ 162 (704)
|.+||++.++..|+|+|+|+|+|+|+++.||.|++|++|||||||||++.+|.++++||++++.++ ++|+|+||||+|.
T Consensus 129 Y~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~-~LklIimSATlda 207 (674)
T KOG0922|consen 129 YTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRP-DLKLIIMSATLDA 207 (674)
T ss_pred eEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCC-CceEEEEeeeecH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred HHHhcccCCCCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCC
Q 005291 163 EKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDE 242 (704)
Q Consensus 163 ~~~~~~~~~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~ 242 (704)
+.|++||++|+++.++||.|||+++|.+.+..+|+++.+..+++||.++++|+||||++|++||+.+++.|.+....+..
T Consensus 208 ~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~ 287 (674)
T KOG0922|consen 208 EKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPE 287 (674)
T ss_pred HHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998776654
Q ss_pred CCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccH
Q 005291 243 GSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISK 322 (704)
Q Consensus 243 ~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~ 322 (704)
+. +. .++|+||+||.++|.+||++.+.|.||||+||||||||||||||.||||+|++|++.|||.+|++.|...|+|+
T Consensus 288 ~~-~~-~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISk 365 (674)
T KOG0922|consen 288 DC-PE-LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISK 365 (674)
T ss_pred cC-cc-eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechH
Confidence 43 23 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHhhccccCCCCCceEEEecCCccccccCCCCCCCccccCChHHHHHhhcccCccccccccccCCCCCCHHHHHHHHH
Q 005291 323 VQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDALK 402 (704)
Q Consensus 323 ~~~~QR~GRaGR~~~G~c~~L~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~l~~~~~~~~~~~~~~~P~~~~l~~al~ 402 (704)
+++.||+|||||++||+|||||++++|+. |++.++|||+|++|+.++|+||++|++| +..|+|+|||+++++..|++
T Consensus 366 asA~QRaGRAGRt~pGkcyRLYte~~~~~-~~~~~~PEI~R~~Ls~~vL~Lkalgi~d--~l~F~f~d~P~~~~l~~AL~ 442 (674)
T KOG0922|consen 366 ASANQRAGRAGRTGPGKCYRLYTESAYDK-MPLQTVPEIQRVNLSSAVLQLKALGIND--PLRFPFIDPPPPEALEEALE 442 (674)
T ss_pred HHHhhhcccCCCCCCceEEEeeeHHHHhh-cccCCCCceeeechHHHHHHHHhcCCCC--cccCCCCCCCChHHHHHHHH
Confidence 99999999999999999999999999976 9999999999999999999999999999 99999999999999999999
Q ss_pred HHHHcccccCCCCCCH-HHHHHhcCCCChHhHHHHHHhhhcCCHHHHHHHHHHhccCCcccCCCCchHH-HHhhcCCCCC
Q 005291 403 QLYLIDAIDENGSITS-IGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGRSKSTE-KKRKHTPLEL 480 (704)
Q Consensus 403 ~L~~lgald~~~~lT~-lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~-~~~~~~~~~~ 480 (704)
+|+.+||||++|.||. +|+.|++||++|.++|||+.+..+||.+++++||||||++++|.+|.+++.+ ++..|.+|.
T Consensus 443 ~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~- 521 (674)
T KOG0922|consen 443 ELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSRPKDKKAEDADRKRAKFA- 521 (674)
T ss_pred HHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceecCccchhhhhhhHHHHhhc-
Confidence 9999999999999999 9999999999999999999999999999999999999999999999988777 888999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCchHHHHHccccccccccHHHHHHHHHHHHHHhcCCCcccccccccccchhhHHHHH
Q 005291 481 PDGSGWGDHIQLLQIYECWDECDYDVNWVKDNGLQVRGMMFVKDIRKQLCQIMQKIAKGSLDVRANHIWKESRQDYRKLR 560 (704)
Q Consensus 481 ~~~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 560 (704)
+..|||+|+|++|+.|.+++.+++||.+||+|++.|+.|.++|+||..++.+.+.... ++..+.+.++
T Consensus 522 ---~~eGDh~tlL~vy~~~~~~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~---------s~~~d~~~i~ 589 (674)
T KOG0922|consen 522 ---NPEGDHLTLLNVYESWKENGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVS---------SCGGDMEKIR 589 (674)
T ss_pred ---CcccCHHHHHHHHHHHHhcCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCcc---------CCCCCHHHHH
Confidence 8899999999999999999999999999999999999999999999999987764332 3444678999
Q ss_pred HHHHhhcchhhhhhhcCCCceeEecccCCeEEECCCCCCCCcCCCCCCCEEEEEeecccccchhhhccccCHhhHHHHhc
Q 005291 561 KALCVGYANQLAERMIHHNGYRTLGFKPQLVQVHPSSELKTDEEGLLPNYVVYHELIATSRPYMRNVCAVEMQWVMPILK 640 (704)
Q Consensus 561 ~~l~~g~~~~va~~~~~~~~y~~~~~~~~~~~ihpsS~l~~~~~~~~~~~ivy~e~~~t~~~~~r~~~~i~~~wl~~~~~ 640 (704)
+|||+|||.|+|++..+.+ |+++ .+++.|+|||||+|+. .+|+||||||++.|+|.|||+||.|+++||.+++|
T Consensus 590 k~l~aGff~N~A~~~~~~~-Yrti-~~~~~v~IHPSS~l~~----~~p~~viy~el~~Ttk~Y~r~Vt~i~~~wL~e~ap 663 (674)
T KOG0922|consen 590 KCLCAGFFRNVAERDYQDG-YRTI-RGGQPVYIHPSSVLFR----RKPEWVIYHELLQTTKEYMRNVTAIDPEWLLELAP 663 (674)
T ss_pred HHHHHHHHHHHHHhhcCCC-eEEc-cCCcEEEEechHHhhc----CCCCEEEEEEEeecchHhHhheeecCHHHHHHhCc
Confidence 9999999999999985434 9999 6899999999999994 45999999999999999999999999999999999
Q ss_pred cccccc
Q 005291 641 KLEKID 646 (704)
Q Consensus 641 ~~~~~~ 646 (704)
++++..
T Consensus 664 ~~~~~~ 669 (674)
T KOG0922|consen 664 HFFKQS 669 (674)
T ss_pred hHhhcc
Confidence 997653
No 2
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-146 Score=1156.64 Aligned_cols=622 Identities=45% Similarity=0.800 Sum_probs=602.0
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceee
Q 005291 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (704)
Q Consensus 3 ~LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg 82 (704)
.|||+..+++++..|..|++++|+|+||||||||++++|++.++...+.|.|+||||++|+++|+|++++++..+|..||
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCCh
Q 005291 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (704)
Q Consensus 83 ~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~ 162 (704)
|.+||++.+++.|.|.|+|+|+|+|+.+.+..|.+|++||+||||||++++|.++++++.++..+. ++++|++|||+++
T Consensus 434 YsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRr-dlKliVtSATm~a 512 (1042)
T KOG0924|consen 434 YSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRR-DLKLIVTSATMDA 512 (1042)
T ss_pred eEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhc-cceEEEeeccccH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 9999999999999
Q ss_pred HHHhcccCCCCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCC
Q 005291 163 EKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDE 242 (704)
Q Consensus 163 ~~~~~~~~~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~ 242 (704)
+.|++||++||.+.+|||+|||++.|...+..+|++.++...++||...++|+||||++|+++|+..+..+.+.+..+..
T Consensus 513 ~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~ 592 (1042)
T KOG0924|consen 513 QKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDS 592 (1042)
T ss_pred HHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877665
Q ss_pred CCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccH
Q 005291 243 GSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISK 322 (704)
Q Consensus 243 ~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~ 322 (704)
....++.|+|+|+.||.+.|.++|++.+.|.+|+||||||||||+|||||.||||+|++|.++|||..|++.|...|||+
T Consensus 593 ~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~ 672 (1042)
T KOG0924|consen 593 APTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQ 672 (1042)
T ss_pred CCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechh
Confidence 54458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHhhccccCCCCCceEEEecCCccccccCCCCCCCccccCChHHHHHhhcccCccccccccccCCCCCCHHHHHHHHH
Q 005291 323 VQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDALK 402 (704)
Q Consensus 323 ~~~~QR~GRaGR~~~G~c~~L~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~l~~~~~~~~~~~~~~~P~~~~l~~al~ 402 (704)
+++.||+|||||++||.||||||+..|.++|.+.++|||+|++|.+++|.||++|+++ +..|+|+|||+.+.+..|+-
T Consensus 673 AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~d--ll~FdFmD~Pped~~~~sly 750 (1042)
T KOG0924|consen 673 ANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDD--LLKFDFMDPPPEDNLLNSLY 750 (1042)
T ss_pred ccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhh--hhCCCcCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred HHHHcccccCCCCCCHHHHHHhcCCCChHhHHHHHHhhhcCCHHHHHHHHHHhccCCcccCCCCchHHHHhhcCCCCCCC
Q 005291 403 QLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGRSKSTEKKRKHTPLELPD 482 (704)
Q Consensus 403 ~L~~lgald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~~~~~~ 482 (704)
+|..+||||..|.||++|+.|++|||||.++||||.|+.+||.+|+|+|++|||+..+|++|.+..++++.++.+|.
T Consensus 751 ~Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~--- 827 (1042)
T KOG0924|consen 751 QLWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQ--- 827 (1042)
T ss_pred HHHHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCchHHHHHccccccccccHHHHHHHHHHHHHHhcCCCcccccccccccchhhHHHHHHH
Q 005291 483 GSGWGDHIQLLQIYECWDECDYDVNWVKDNGLQVRGMMFVKDIRKQLCQIMQKIAKGSLDVRANHIWKESRQDYRKLRKA 562 (704)
Q Consensus 483 ~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 562 (704)
++.|||||+||+|++|..++++..||.+|+|++++|+.|+++|.||+.+|+.++.+.. ++ .+|+.+++|
T Consensus 828 -~~~sDhLTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~---------S~-~dwdivrKC 896 (1042)
T KOG0924|consen 828 -VPESDHLTLLNVFNQWRKNKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLI---------SS-DDWDIVRKC 896 (1042)
T ss_pred -CCCCchhhHHHHHHHHHhcCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcc---------cC-chHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998775432 33 589999999
Q ss_pred HHhhcchhhhhhhcCCCceeEecccCCeEEECCCCCCCCcCCCCCCCEEEEEeecccccchhhhccccCHhhHHHHhccc
Q 005291 563 LCVGYANQLAERMIHHNGYRTLGFKPQLVQVHPSSELKTDEEGLLPNYVVYHELIATSRPYMRNVCAVEMQWVMPILKKL 642 (704)
Q Consensus 563 l~~g~~~~va~~~~~~~~y~~~~~~~~~~~ihpsS~l~~~~~~~~~~~ivy~e~~~t~~~~~r~~~~i~~~wl~~~~~~~ 642 (704)
||+|||.|+|++... |.|.++ .+|..+++||||+|++ -..|+||||||++.|++.||++||.|+|+||.+++|.+
T Consensus 897 Ics~~fhn~Arlkg~-g~YV~~-~tg~~c~lHPsS~L~g---~y~p~Yivyhel~~T~keym~cvT~v~~~wl~E~gp~~ 971 (1042)
T KOG0924|consen 897 ICSAYFHNAARLKGI-GEYVNL-STGIPCHLHPSSVLHG---LYTPDYIVYHELLMTTKEYMQCVTSVSPEWLAELGPMF 971 (1042)
T ss_pred HHHHHHHHHHHhccC-ceEEEc-cCCcceeecchHhhhc---CCCCCeeeehHHHHhHHHHHHHHhhCCHHHHHHhCcee
Confidence 999999999998864 789999 7899999999999995 35899999999999999999999999999999999999
Q ss_pred cccc
Q 005291 643 EKID 646 (704)
Q Consensus 643 ~~~~ 646 (704)
|++.
T Consensus 972 y~ik 975 (1042)
T KOG0924|consen 972 YSIK 975 (1042)
T ss_pred Eecc
Confidence 9886
No 3
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-146 Score=1154.69 Aligned_cols=621 Identities=47% Similarity=0.840 Sum_probs=595.7
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE-EEEcchhhHHHHHHHHHHHHHhCCccCcee
Q 005291 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-IGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (704)
Q Consensus 3 ~LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~-ilv~~P~r~la~~~a~rva~~~~~~vg~~v 81 (704)
.||||.++++++.++..+++++|+|+||||||||+||+|.+.++..+++ |.|+||||++|.++|.||++++|+.+|..|
T Consensus 263 sLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eV 342 (902)
T KOG0923|consen 263 SLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEV 342 (902)
T ss_pred cCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCccccccc
Confidence 6999999999999999999999999999999999999999999988776 999999999999999999999999999999
Q ss_pred eeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 82 g~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
||.+||+++++.+|.|.|||+|||+|+++.+|.|..|++|||||||||++++|++.++++.+.+.|| ++|++++|||+|
T Consensus 343 GYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~Rp-dLKllIsSAT~D 421 (902)
T KOG0923|consen 343 GYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRP-DLKLLISSATMD 421 (902)
T ss_pred ceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCC-cceEEeeccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred hHHHhcccCCCCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcC
Q 005291 162 GEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLD 241 (704)
Q Consensus 162 ~~~~~~~~~~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~ 241 (704)
++.|+.||+++|++.+|||.|||+++|...+..+|+++++..+++||.+++.|+||||++|+++|+.+.+.|.+....+.
T Consensus 422 AekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LG 501 (902)
T KOG0923|consen 422 AEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLG 501 (902)
T ss_pred HHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887776
Q ss_pred CCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCcccccccccc
Q 005291 242 EGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQIS 321 (704)
Q Consensus 242 ~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS 321 (704)
... ..+.++|+|++||.+.|.+||++.++|.+|||+||||||||||||||.||||+||+|++.|||++||.+|..+|||
T Consensus 502 ski-~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piS 580 (902)
T KOG0923|consen 502 SKI-RELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPIS 580 (902)
T ss_pred ccc-ceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeec
Confidence 543 5789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHhhccccCCCCCceEEEecCCccccccCCCCCCCccccCChHHHHHhhcccCccccccccccCCCCCCHHHHHHHH
Q 005291 322 KVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDAL 401 (704)
Q Consensus 322 ~~~~~QR~GRaGR~~~G~c~~L~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~l~~~~~~~~~~~~~~~P~~~~l~~al 401 (704)
++++.||+|||||++||+|||||+...|.+++.+.++|||+|+||.+++|.||+||++| +..|||+|||+.+++..||
T Consensus 581 KAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~D--l~~FdFmDpPp~etL~~aL 658 (902)
T KOG0923|consen 581 KASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHD--LIHFDFLDPPPTETLLKAL 658 (902)
T ss_pred hhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcch--hcccccCCCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHcccccCCCCCCHHHHHHhcCCCChHhHHHHHHhhhcCCHHHHHHHHHHhccC-CcccCCCCchHHHHhhcCCCCC
Q 005291 402 KQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAE-TTLLPGRSKSTEKKRKHTPLEL 480 (704)
Q Consensus 402 ~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~l~i~a~ls~~-~~f~~~~~~~~~~~~~~~~~~~ 480 (704)
++|+.|||||..|+||.+||.|++||+||+++|||+.+..++|.+++++||||||+. ++|++|.++...++.+++.|.
T Consensus 659 E~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~- 737 (902)
T KOG0923|consen 659 EQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFE- 737 (902)
T ss_pred HHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccC-
Confidence 999999999999999999999999999999999999999999999999999999997 799999999888999999998
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCchHHHHHccccccccccHHHHHHHHHHHHHHhcCCCcccccccccccchhhHHHHH
Q 005291 481 PDGSGWGDHIQLLQIYECWDECDYDVNWVKDNGLQVRGMMFVKDIRKQLCQIMQKIAKGSLDVRANHIWKESRQDYRKLR 560 (704)
Q Consensus 481 ~~~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 560 (704)
.+.|||+++|++|++|...+++..||.+|++.+++|.+|+++|.||..++.+.+.... ++..+...|+
T Consensus 738 ---~~~gDhi~~L~vyn~w~es~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~---------s~~~~~~~ir 805 (902)
T KOG0923|consen 738 ---EPVGDHIVLLNVYNQWKESKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLS---------SNQNDLDKIR 805 (902)
T ss_pred ---CCCcchhhhhHHHHHHhhcchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccccc---------CChHHHHHHH
Confidence 7799999999999999999999999999999999999999999999999987653322 2333567899
Q ss_pred HHHHhhcchhhhhhhcCCCceeEecccCCeEEECCCCCCCCcCCCCCCCEEEEEeecccccchhhhccccCHhhHHHHhc
Q 005291 561 KALCVGYANQLAERMIHHNGYRTLGFKPQLVQVHPSSELKTDEEGLLPNYVVYHELIATSRPYMRNVCAVEMQWVMPILK 640 (704)
Q Consensus 561 ~~l~~g~~~~va~~~~~~~~y~~~~~~~~~~~ihpsS~l~~~~~~~~~~~ivy~e~~~t~~~~~r~~~~i~~~wl~~~~~ 640 (704)
+|+.+|||+++|+...+ |.|+++ .+.+.|++||.|+++ +..|.|||||+++.|++.|||.++.+.++||.+++|
T Consensus 806 k~i~aGff~h~a~l~~~-g~y~tv-k~~~tv~~hp~S~l~----~~~P~wvvy~eLv~tske~mr~~~e~e~~Wlie~ap 879 (902)
T KOG0923|consen 806 KAITAGFFYHTAKLSKG-GHYRTV-KHPQTVSIHPNSGLF----EQLPRWVVYHELVLTSKEFMRQVIEIEEEWLIEVAP 879 (902)
T ss_pred HHHhccccccceeccCC-Ccceee-ccCcceeecCccccc----ccCCceEEEeehhcChHHHHHHHHhhhhhHHHHhch
Confidence 99999999999998864 789999 788889999999998 456899999999999999999999999999999999
Q ss_pred cccccc
Q 005291 641 KLEKID 646 (704)
Q Consensus 641 ~~~~~~ 646 (704)
+||+..
T Consensus 880 hyyk~k 885 (902)
T KOG0923|consen 880 HYYKLK 885 (902)
T ss_pred hhhhhh
Confidence 999754
No 4
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-140 Score=1076.80 Aligned_cols=619 Identities=43% Similarity=0.725 Sum_probs=588.2
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceee
Q 005291 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (704)
Q Consensus 3 ~LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg 82 (704)
.||+|.+++++++.+.+++.++++|+||||||||+|+|..+......+.|.|+||+|++|.++|.|++++|.+.+|++||
T Consensus 45 ~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVG 124 (699)
T KOG0925|consen 45 ELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVG 124 (699)
T ss_pred cCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccccchhcc
Confidence 69999999999999999999999999999999999999998776666889999999999999999999999999999999
Q ss_pred eeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCCh
Q 005291 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (704)
Q Consensus 83 ~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~ 162 (704)
|.++|+++++++|-+.|||+|||+|+.++++.+..|++||+||||||++.+|.++++++.+...++ ++|+|+||||++.
T Consensus 125 ysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rp-dLk~vvmSatl~a 203 (699)
T KOG0925|consen 125 YSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRP-DLKLVVMSATLDA 203 (699)
T ss_pred ccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCC-CceEEEeecccch
Confidence 999999999999999999999999999999999999999999999999999999999999999997 9999999999999
Q ss_pred HHHhcccCCCCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCC
Q 005291 163 EKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDE 242 (704)
Q Consensus 163 ~~~~~~~~~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~ 242 (704)
.+|+.||+++|++.++| .+||+++|.++++.+|+++++.++++||..+.+|+||||++|.++|+.+|+.+.....++..
T Consensus 204 ~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~ 282 (699)
T KOG0925|consen 204 EKFQRYFGNAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGP 282 (699)
T ss_pred HHHHHHhCCCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999 89999999999999999999999999999999999999999999999999999987776654
Q ss_pred CCCCCeEEEeccCCCCHHHHhhccCCCCCC-----CcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCcccccc
Q 005291 243 GSCMDAVILPLHGSLPPEMQVRVFSPPPPN-----CRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDV 317 (704)
Q Consensus 243 ~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g-----~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~ 317 (704)
+ ...+.|+|+| +.+|+++|++.+.. .+||+|+||+||++++|++|.+|||.|+.|+++|||+.+..++..
T Consensus 283 ~-~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv 357 (699)
T KOG0925|consen 283 Q-VGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLV 357 (699)
T ss_pred c-cCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeee
Confidence 3 3688999999 78889999987643 589999999999999999999999999999999999999999999
Q ss_pred ccccHHhHHhhccccCCCCCceEEEecCCccccccCCCCCCCccccCChHHHHHhhcccCccccccccccCCCCCCHHHH
Q 005291 318 VQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESL 397 (704)
Q Consensus 318 ~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~l~~~~~~~~~~~~~~~P~~~~l 397 (704)
.|||++++.||+|||||++||+|||||+++.|..+|.+.+.|||+|++|++++|++|.+|+++ +..|+|+|||.++++
T Consensus 358 ~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~d--lvhfdfmDpPAPEtL 435 (699)
T KOG0925|consen 358 SPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDD--LVHFDFMDPPAPETL 435 (699)
T ss_pred ccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCccc--ccCCcCCCCCChHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHcccccCCCCCCHHHHHHhcCCCChHhHHHHHHhhhcCCHHHHHHHHHHhccCCcccCCC-CchHHHHhhcC
Q 005291 398 EDALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGR-SKSTEKKRKHT 476 (704)
Q Consensus 398 ~~al~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~l~i~a~ls~~~~f~~~~-~~~~~~~~~~~ 476 (704)
.+|++.|..++|||++|+||++|..|++||+||.+|||||.+++|+|.+|+++|+||||+.+.|++|. +.++.++.+++
T Consensus 436 MrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAdeak~ 515 (699)
T KOG0925|consen 436 MRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTSSASKAADEAKE 515 (699)
T ss_pred HHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 67778889999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCchHHHHHccccccccccHHHHHHHHHHHHHHhcCCCcccccccccccchhhH
Q 005291 477 PLELPDGSGWGDHIQLLQIYECWDECDYDVNWVKDNGLQVRGMMFVKDIRKQLCQIMQKIAKGSLDVRANHIWKESRQDY 556 (704)
Q Consensus 477 ~~~~~~~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~~~~~~~~~~~~~~~~ 556 (704)
.|+ |..|||+|++|+|.+|++++...+||++||||+++|+.|.++|.||.++|.+++.+...+ .+ .+..+.
T Consensus 516 ~fa----H~dGDHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st----~F-~S~~y~ 586 (699)
T KOG0925|consen 516 TFA----HIDGDHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCST----DF-GSRDYY 586 (699)
T ss_pred Hhc----cCCcchHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCC----CC-CChhHH
Confidence 999 999999999999999999999999999999999999999999999999999988543211 11 233467
Q ss_pred HHHHHHHHhhcchhhhhhhcCCCceeEecccCCeEEECCCCCCCCcCCCCCCCEEEEEeecccccchhhhccccCHhhHH
Q 005291 557 RKLRKALCVGYANQLAERMIHHNGYRTLGFKPQLVQVHPSSELKTDEEGLLPNYVVYHELIATSRPYMRNVCAVEMQWVM 636 (704)
Q Consensus 557 ~~i~~~l~~g~~~~va~~~~~~~~y~~~~~~~~~~~ihpsS~l~~~~~~~~~~~ivy~e~~~t~~~~~r~~~~i~~~wl~ 636 (704)
..|++||.+|||+|||+...+ ++|.|+ .+++.|++||++++. .+|+||+|||++.|+++|||.||.|.|+||.
T Consensus 587 ~nirKALvsgyFmqVA~~~~~-~~Ylt~-kdnqvvqLhps~~l~-----~~PeWVlyneFvlt~~N~ir~vt~I~pewlv 659 (699)
T KOG0925|consen 587 VNIRKALVSGYFMQVAHLERG-GHYLTV-KDNQVVQLHPSTCLD-----HKPEWVLYNEFVLTTKNFIRTVTDIRPEWLV 659 (699)
T ss_pred HHHHHHHHHHHHHHHHhhccC-CceEEE-ecCceEEeccccccC-----CCCCeEEEeeEEeeccceeeeecccCHHHHH
Confidence 789999999999999998876 699999 899999999999994 5799999999999999999999999999999
Q ss_pred HHhccccccc
Q 005291 637 PILKKLEKID 646 (704)
Q Consensus 637 ~~~~~~~~~~ 646 (704)
+++|.||+++
T Consensus 660 ~laP~Yydls 669 (699)
T KOG0925|consen 660 ELAPQYYDLS 669 (699)
T ss_pred Hhchhhcccc
Confidence 9999999654
No 5
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.9e-120 Score=1065.32 Aligned_cols=610 Identities=35% Similarity=0.572 Sum_probs=558.6
Q ss_pred CCCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCcee
Q 005291 2 ANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (704)
Q Consensus 2 ~~LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~v 81 (704)
.+|||++++++|++++.++++++|+|+|||||||++|+++++......+.|+|+||+|.+|.++|.+++++++..+|..|
T Consensus 71 ~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~V 150 (1294)
T PRK11131 71 ENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCV 150 (1294)
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhccee
Confidence 36999999999999999999999999999999999999999876655678999999999999999999999999999999
Q ss_pred eeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 82 g~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
||.++++++.+.+++|+|+|+|+|++.+..++.++++++|||||||||++++|+++++++.++..++ ++|+|+||||++
T Consensus 151 GY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rp-dlKvILmSATid 229 (1294)
T PRK11131 151 GYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRP-DLKVIITSATID 229 (1294)
T ss_pred ceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCC-CceEEEeeCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988776 899999999999
Q ss_pred hHHHhcccCCCCccccCCCcCceeEEecCCCC------cchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHH
Q 005291 162 GEKVSKFFSNCPTLNVPGKLYPVEILHSKERP------TSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLED 235 (704)
Q Consensus 162 ~~~~~~~~~~~~~i~i~~~~~pv~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~ 235 (704)
.+.|++||++++++.++|+.|||+++|.+... .+++...+..+..++ .++.|+||||+||+.+|+.+++.|.+
T Consensus 230 ~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~~ 308 (1294)
T PRK11131 230 PERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSGEREIRDTADALNK 308 (1294)
T ss_pred HHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999976532 234444444444443 45679999999999999999999986
Q ss_pred HhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCcccc
Q 005291 236 KIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSL 315 (704)
Q Consensus 236 ~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l 315 (704)
.. .+...++++||+|+.++|.++|+. .|.++||||||+||+|||||+|+||||+|++|++.||+.+|++.|
T Consensus 309 ~~-------~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~L 379 (1294)
T PRK11131 309 LN-------LRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRL 379 (1294)
T ss_pred cC-------CCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccC
Confidence 41 135678999999999999999997 478999999999999999999999999999999999999999999
Q ss_pred ccccccHHhHHhhccccCCCCCceEEEecCCccccccCCCCCCCccccCChHHHHHhhcccCccccccccccCCCCCCHH
Q 005291 316 DVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSE 395 (704)
Q Consensus 316 ~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~l~~~~~~~~~~~~~~~P~~~ 395 (704)
+..|+|+++|.||+|||||.++|+||+||++++|.. +++++.|||+|++|.+++|+++++|+++ +..|+|+|||+.+
T Consensus 380 p~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~-~~~~~~PEIlR~~L~~viL~lk~lgl~d--i~~F~fldpP~~~ 456 (1294)
T PRK11131 380 PIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLS-RPEFTDPEILRTNLASVILQMTALGLGD--IAAFPFVEAPDKR 456 (1294)
T ss_pred CeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHh-hhcccCCccccCCHHHHHHHHHHcCCCC--cceeeCCCCCCHH
Confidence 999999999999999999999999999999999987 9999999999999999999999999998 8999999999999
Q ss_pred HHHHHHHHHHHcccccCC-----CCCCHHHHHHhcCCCChHhHHHHHHhhhcCCHHHHHHHHHHhccCCcccCCCCchHH
Q 005291 396 SLEDALKQLYLIDAIDEN-----GSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGRSKSTE 470 (704)
Q Consensus 396 ~l~~al~~L~~lgald~~-----~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~ 470 (704)
+|..|++.|+.+||||.+ ++||++|+.|++||+||++||||+.|..+||++++++|||+||+++||..|.+++.+
T Consensus 457 ~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~~~~~ 536 (1294)
T PRK11131 457 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQDPRERPMDKQQA 536 (1294)
T ss_pred HHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCchhHHH
Confidence 999999999999999864 579999999999999999999999999999999999999999999999999999889
Q ss_pred HHhhcCCCCCCCCCCCCCHHHHHHHHHHhhhc------CCchHHHHHccccccccccHHHHHHHHHHHHHHhcCCCcccc
Q 005291 471 KKRKHTPLELPDGSGWGDHIQLLQIYECWDEC------DYDVNWVKDNGLQVRGMMFVKDIRKQLCQIMQKIAKGSLDVR 544 (704)
Q Consensus 471 ~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~------~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~~~~ 544 (704)
++.+|..|. +..|||++++|+|+.|.+. +..++||++||||+.+|+++.+++.||.+++++++....
T Consensus 537 a~~~~~~f~----~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~--- 609 (1294)
T PRK11131 537 SDEKHRRFA----DKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVN--- 609 (1294)
T ss_pred HHHHHHhhC----CCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCC---
Confidence 999999999 8899999999999999752 224689999999999999999999999999998874332
Q ss_pred cccccccchhhHHHHHHHHHhhcchhhhhhhcCCCceeEecccCCeEEECCCCCCCCcCCCCCCCEEEEEeecccccchh
Q 005291 545 ANHIWKESRQDYRKLRKALCVGYANQLAERMIHHNGYRTLGFKPQLVQVHPSSELKTDEEGLLPNYVVYHELIATSRPYM 624 (704)
Q Consensus 545 ~~~~~~~~~~~~~~i~~~l~~g~~~~va~~~~~~~~y~~~~~~~~~~~ihpsS~l~~~~~~~~~~~ivy~e~~~t~~~~~ 624 (704)
.+..+++.|++|||+|||+|||++..+.+.|.+.. +..++|||+|+|+ ..+|+||||+|++.|+|.||
T Consensus 610 ------~~~~~~~~i~~all~G~~~nva~~~~~~~~y~~~~--~~~~~ihP~S~L~----~~~p~wvv~~Elv~Tsr~y~ 677 (1294)
T PRK11131 610 ------SEPAEYREIHTALLTGLLSHIGMKDAEKQEYTGAR--NARFSIFPGSGLF----KKPPKWVMVAELVETSRLWG 677 (1294)
T ss_pred ------CCcccHHHHHHHHHhhcHHHHeeccCCCCeEEccC--CcEEEEcCCcccc----CCCCCEEEEEeeeccChhhh
Confidence 22346789999999999999998876545688763 8899999999998 35799999999999999999
Q ss_pred hhccccCHhhHHHHhccccc
Q 005291 625 RNVCAVEMQWVMPILKKLEK 644 (704)
Q Consensus 625 r~~~~i~~~wl~~~~~~~~~ 644 (704)
|+|+.|+|+||.+++|++++
T Consensus 678 r~va~I~p~Wl~~~a~~l~~ 697 (1294)
T PRK11131 678 RIAARIEPEWIEPLAQHLIK 697 (1294)
T ss_pred hhhcccCHHHHHHHHHHhcc
Confidence 99999999999999999964
No 6
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2e-116 Score=1035.71 Aligned_cols=609 Identities=38% Similarity=0.606 Sum_probs=558.0
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceee
Q 005291 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (704)
Q Consensus 3 ~LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg 82 (704)
+|||++++++|++++.++++++|+|+|||||||++|+++++......++|+|+||||.+|.++|.++++++|..+|..||
T Consensus 65 ~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VG 144 (1283)
T TIGR01967 65 NLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVG 144 (1283)
T ss_pred CCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEe
Confidence 69999999999999999999999999999999999999998876656799999999999999999999999999999999
Q ss_pred eeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCCh
Q 005291 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (704)
Q Consensus 83 ~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~ 162 (704)
|.++++++.+.+|+|+|+|+|+|++++..++.++++++|||||||||++++|+++++++.++..++ ++|+|+||||++.
T Consensus 145 Y~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rp-dLKlIlmSATld~ 223 (1283)
T TIGR01967 145 YKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRP-DLKIIITSATIDP 223 (1283)
T ss_pred eEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCC-CCeEEEEeCCcCH
Confidence 999999999999999999999999999999999999999999999999999999999999988887 9999999999999
Q ss_pred HHHhcccCCCCccccCCCcCceeEEecCCCC------cchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHH
Q 005291 163 EKVSKFFSNCPTLNVPGKLYPVEILHSKERP------TSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDK 236 (704)
Q Consensus 163 ~~~~~~~~~~~~i~i~~~~~pv~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~ 236 (704)
+.|++||++++++.++|+.|||+++|.+... .++....+..+..+. .+..|+||||+||+.+|+.+++.|.+.
T Consensus 224 ~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~-~~~~GdILVFLpg~~EI~~l~~~L~~~ 302 (1283)
T TIGR01967 224 ERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELF-AEGPGDILIFLPGEREIRDAAEILRKR 302 (1283)
T ss_pred HHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHH-hhCCCCEEEeCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999975432 134444444444443 346799999999999999999999865
Q ss_pred hhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccc
Q 005291 237 IRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLD 316 (704)
Q Consensus 237 ~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~ 316 (704)
. ..++.++++||+|+.++|.++|+++ +.++||||||+||+|||||+|+||||+|++|.+.||+.+|+..|+
T Consensus 303 ~-------~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~ 373 (1283)
T TIGR01967 303 N-------LRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLP 373 (1283)
T ss_pred C-------CCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccC
Confidence 2 1357899999999999999999876 358999999999999999999999999999999999999999999
Q ss_pred cccccHHhHHhhccccCCCCCceEEEecCCccccccCCCCCCCccccCChHHHHHhhcccCccccccccccCCCCCCHHH
Q 005291 317 VVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSES 396 (704)
Q Consensus 317 ~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~l~~~~~~~~~~~~~~~P~~~~ 396 (704)
..|+|+++|.||+|||||.++|+||+||++++|.. +++++.|||+|++|++++|+++++|+.+ +..|+|+|||+..+
T Consensus 374 ~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~-~~~~~~PEIlR~~L~~viL~l~~lg~~d--i~~f~fldpP~~~~ 450 (1283)
T TIGR01967 374 IEPISQASANQRKGRCGRVAPGICIRLYSEEDFNS-RPEFTDPEILRTNLASVILQMLALRLGD--IAAFPFIEAPDPRA 450 (1283)
T ss_pred CccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHh-hhhccCcccccccHHHHHHHHHhcCCCC--cccccCCCCCCHHH
Confidence 99999999999999999999999999999999987 9999999999999999999999999998 89999999999999
Q ss_pred HHHHHHHHHHcccccCCC---CCCHHHHHHhcCCCChHhHHHHHHhhhcCCHHHHHHHHHHhccCCcccCCCCchHHHHh
Q 005291 397 LEDALKQLYLIDAIDENG---SITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGRSKSTEKKR 473 (704)
Q Consensus 397 l~~al~~L~~lgald~~~---~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~ 473 (704)
+..|++.|+.+||||.+| +||++|+.|+.||+||++||||+.|..+||++++++|||+||++++|..|.+++.+++.
T Consensus 451 i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~~~~a~~ 530 (1283)
T TIGR01967 451 IRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPRERPMEKQQAADQ 530 (1283)
T ss_pred HHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcchhHHHHHH
Confidence 999999999999999998 79999999999999999999999999999999999999999999999999988889999
Q ss_pred hcCCCCCCCCCCCCCHHHHHHHHHHhhhc------CCchHHHHHccccccccccHHHHHHHHHHHHHHhcCCCccccccc
Q 005291 474 KHTPLELPDGSGWGDHIQLLQIYECWDEC------DYDVNWVKDNGLQVRGMMFVKDIRKQLCQIMQKIAKGSLDVRANH 547 (704)
Q Consensus 474 ~~~~~~~~~~~~~~D~~~~l~~~~~~~~~------~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~~~~~~~ 547 (704)
+|..|. +..|||++++|+|+.|.+. +..+.||++||||+..|+++.++++||.+++++++....
T Consensus 531 ~~~~f~----~~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~------ 600 (1283)
T TIGR01967 531 AHARFK----DPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLN------ 600 (1283)
T ss_pred HHHHhc----CCCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcC------
Confidence 999998 7899999999999999752 234699999999999999999999999999987764321
Q ss_pred ccccchhhHHHHHHHHHhhcchhhhhhhcCCCceeEecccCCeEEECCCCCCCCcCCCCCCCEEEEEeecccccchhhhc
Q 005291 548 IWKESRQDYRKLRKALCVGYANQLAERMIHHNGYRTLGFKPQLVQVHPSSELKTDEEGLLPNYVVYHELIATSRPYMRNV 627 (704)
Q Consensus 548 ~~~~~~~~~~~i~~~l~~g~~~~va~~~~~~~~y~~~~~~~~~~~ihpsS~l~~~~~~~~~~~ivy~e~~~t~~~~~r~~ 627 (704)
.+..+++.+++||++||++|||++... +.|.+.+ |..++|||+|+|+. .+|+||||+|++.|++.|||.|
T Consensus 601 ---~~~~~~~~i~~~l~~g~~~~iA~~~~~-~~y~~~~--g~~~~ihP~S~L~~----~~p~wvv~~elv~t~~~~ir~~ 670 (1283)
T TIGR01967 601 ---EEPADYDAIHKALLSGLLSQIGMKDEK-HEYDGAR--GRKFHIFPGSPLFK----KPPKWVMAAELVETSKLYARLV 670 (1283)
T ss_pred ---CCCccHHHHHHHHHHhhHHHHheeCCC-CcEEecC--CcEEEECCCccccC----CCCCEEEEeeecccchheEeee
Confidence 122345679999999999999998754 6799975 88999999999983 4699999999999999999999
Q ss_pred cccCHhhHHHHhcccccc
Q 005291 628 CAVEMQWVMPILKKLEKI 645 (704)
Q Consensus 628 ~~i~~~wl~~~~~~~~~~ 645 (704)
++|+|+||.+++|++++.
T Consensus 671 a~I~p~wl~~~~~~~~~~ 688 (1283)
T TIGR01967 671 AKIEPEWVEPVAGHLIKK 688 (1283)
T ss_pred ccCCHHHHHHHhHHHhEe
Confidence 999999999999998653
No 7
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.7e-116 Score=997.43 Aligned_cols=625 Identities=42% Similarity=0.650 Sum_probs=567.4
Q ss_pred CCCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCcee
Q 005291 2 ANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (704)
Q Consensus 2 ~~LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~v 81 (704)
..|||++.+++|++++.++++++|+|||||||||++|+++++..+..+++|+|+||||++|+++|+|++++++..+|+.|
T Consensus 47 ~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 47 SGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred ccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 36999999999999999999999999999999999999999999877889999999999999999999999999999999
Q ss_pred eeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 82 g~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
||.+||+++++++|+|.|||+|+|+++++.|+.|+.|++|||||||||++++|+++++++.++..+++++|+|+||||+|
T Consensus 127 GY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld 206 (845)
T COG1643 127 GYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLD 206 (845)
T ss_pred eEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999988876899999999999
Q ss_pred hHHHhcccCCCCccccCCCcCceeEEecCCCCcch-HHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhc
Q 005291 162 GEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSY-LESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (704)
Q Consensus 162 ~~~~~~~~~~~~~i~i~~~~~pv~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~ 240 (704)
.+.|++||+++|++.++||.|||+++|.+....+| ++..+..+++++..++.|+||||+||++||+.+++.|++. .+
T Consensus 207 ~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~--~l 284 (845)
T COG1643 207 AERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKA--EL 284 (845)
T ss_pred HHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhc--cc
Confidence 99999999999999999999999999988888888 9999999999999999999999999999999999999982 11
Q ss_pred CCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccc
Q 005291 241 DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQI 320 (704)
Q Consensus 241 ~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~i 320 (704)
...+.|+|+||.|+.++|.++|++.+.|++|||+||||||||||||||+||||+|+.|++.||+.+|+..|.+.||
T Consensus 285 ----~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~I 360 (845)
T COG1643 285 ----GDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPI 360 (845)
T ss_pred ----cCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEe
Confidence 1478999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHhHHhhccccCCCCCceEEEecCCccccccCCCCCCCccccCChHHHHHhhcccCcc-ccccccccCCCCCCHHHHHH
Q 005291 321 SKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLS-DINVLKFDFLDPPSSESLED 399 (704)
Q Consensus 321 S~~~~~QR~GRaGR~~~G~c~~L~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~l~~~-~~~~~~~~~~~~P~~~~l~~ 399 (704)
|++++.||+|||||++||+|||||++++|.. |+.++.|||+|+||++++|++++||++ | +..|+|+|||+..++..
T Consensus 361 SqAsA~QRaGRAGR~~pGicyRLyse~~~~~-~~~~t~PEIlrtdLs~~vL~l~~~G~~~d--~~~f~fld~P~~~~i~~ 437 (845)
T COG1643 361 SKASADQRAGRAGRTGPGICYRLYSEEDFLA-FPEFTLPEILRTDLSGLVLQLKSLGIGQD--IAPFPFLDPPPEAAIQA 437 (845)
T ss_pred chhhhhhhccccccCCCceEEEecCHHHHHh-cccCCChhhhhcchHHHHHHHHhcCCCCC--cccCccCCCCChHHHHH
Confidence 9999999999999999999999999999995 999999999999999999999999995 8 89999999999999999
Q ss_pred HHHHHHHcccccCCCCCCHHHHHHhcCCCChHhHHHHHHhhhcCCHHHHHHHHHHhccCC---cccCCCCchH---HHHh
Q 005291 400 ALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAET---TLLPGRSKST---EKKR 473 (704)
Q Consensus 400 al~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~l~i~a~ls~~~---~f~~~~~~~~---~~~~ 473 (704)
|++.|+.+||||.+|.||++|+.|+.||+||++|+||+.|..+||+.++++||||||+++ .|..+.+... ....
T Consensus 438 A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~ 517 (845)
T COG1643 438 ALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDL 517 (845)
T ss_pred HHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998 6877765554 3333
Q ss_pred hc-CCCCCCCCCCCCCHHHHHHHHHHhhhcC------CchHHHHHccccccccccHHHHHHHHHHHHHH-hcCCCcc--c
Q 005291 474 KH-TPLELPDGSGWGDHIQLLQIYECWDECD------YDVNWVKDNGLQVRGMMFVKDIRKQLCQIMQK-IAKGSLD--V 543 (704)
Q Consensus 474 ~~-~~~~~~~~~~~~D~~~~l~~~~~~~~~~------~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~-~~~~~~~--~ 543 (704)
++ ..+.. ..++.+||++++++|..|.... ....||..++++.+.|..+..++.++...+.+ .+..... .
T Consensus 518 ~~~l~~~~-~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~~~~~~ 596 (845)
T COG1643 518 LKRLKRRN-AADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAEI 596 (845)
T ss_pred HHHHHhcc-CCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchhhhccc
Confidence 33 33331 1246899999999999998765 67899999999999999999999998887765 3211100 0
Q ss_pred ccc--------cccccchhhHHHHHHHHHhhcchhhhhhhcCCCceeEecccCCeEEECCCCCCCCcCCCCCCCEEEEEe
Q 005291 544 RAN--------HIWKESRQDYRKLRKALCVGYANQLAERMIHHNGYRTLGFKPQLVQVHPSSELKTDEEGLLPNYVVYHE 615 (704)
Q Consensus 544 ~~~--------~~~~~~~~~~~~i~~~l~~g~~~~va~~~~~~~~y~~~~~~~~~~~ihpsS~l~~~~~~~~~~~ivy~e 615 (704)
+.. .....+. .|+.+++++++|++.|+++.......|.+. .++..+++||+|+-. ....++|++|++
T Consensus 597 ~~~~~~~~~~~~~~~~~~-~~d~~~~~l~a~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~v~~---~~~~~~~~~~~~ 671 (845)
T COG1643 597 DEDEWAAQHLPEHCYSEP-IWDDIRGALAAGRKLNIAQLQLDGRPYVTL-SDNTPVFAHPSSVRL---GLVLLEWIKYAE 671 (845)
T ss_pred Ccchhhhhhhhhhhccch-hHHHHhhhhhhheecceeeeeccccccccC-CCCceeEecchhHhh---cccCcchHHHHH
Confidence 000 0000122 678999999999999999988664568888 568999999999632 256789999999
Q ss_pred ecccccchhh-----------hccccCHhhHHHHhcc
Q 005291 616 LIATSRPYMR-----------NVCAVEMQWVMPILKK 641 (704)
Q Consensus 616 ~~~t~~~~~r-----------~~~~i~~~wl~~~~~~ 641 (704)
.+.+++.|++ .++.+.++||.+.++.
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~wL~~~~~~ 708 (845)
T COG1643 672 FLRTRKGYLREGRGERWPDVQTLIELLKLWLKEQVKG 708 (845)
T ss_pred HHHHHHHHHhhcccccCcccchHhhhHHHhhhhhccc
Confidence 9999999999 6999999999999884
No 8
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-113 Score=923.13 Aligned_cols=628 Identities=40% Similarity=0.669 Sum_probs=560.0
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCC-----CcEEEEcchhhHHHHHHHHHHHHHhCCcc
Q 005291 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTK-----SGIIGVTQPRRVAAVSVARRVAQELGVRL 77 (704)
Q Consensus 3 ~LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~-----~~~ilv~~P~r~la~~~a~rva~~~~~~v 77 (704)
.|||..-.++|+++|+.|.++||+|+||||||||+||+|++.++.. ++.|.++||||++|...|+||+.++|. .
T Consensus 254 ~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~ 332 (1172)
T KOG0926|consen 254 DLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-L 332 (1172)
T ss_pred cCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-C
Confidence 5999999999999999999999999999999999999999998743 469999999999999999999999998 8
Q ss_pred CceeeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc---------
Q 005291 78 GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA--------- 148 (704)
Q Consensus 78 g~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~--------- 148 (704)
|..|||++||+....+.|.|.|||+|+|++++.+|..|..|++|||||||||++++|++.++|.++...|.
T Consensus 333 ~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~ 412 (1172)
T KOG0926|consen 333 GSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQI 412 (1172)
T ss_pred ccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988664
Q ss_pred cCcEEEEEecCCChHHHh---cccC-CCCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHH
Q 005291 149 SKLKILITSATLDGEKVS---KFFS-NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (704)
Q Consensus 149 ~~~kiI~~SATl~~~~~~---~~~~-~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ 224 (704)
..+++|+||||+-...|. ..|. -+|++.++.|.|||.++|....+.+|+.+++.....||.+-++|.||||++|+.
T Consensus 413 kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQq 492 (1172)
T KOG0926|consen 413 KPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQ 492 (1172)
T ss_pred CceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChH
Confidence 268999999999776665 4555 377999999999999999999889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh----------------c------------------------------------------------
Q 005291 225 DIEKLVSKLEDKIRS----------------L------------------------------------------------ 240 (704)
Q Consensus 225 ~i~~~~~~L~~~~~~----------------~------------------------------------------------ 240 (704)
++..+++.|++.+.. +
T Consensus 493 EV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~ 572 (1172)
T KOG0926|consen 493 EVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALA 572 (1172)
T ss_pred HHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccc
Confidence 999999999876320 0
Q ss_pred -------------------------CCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEE
Q 005291 241 -------------------------DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYV 295 (704)
Q Consensus 241 -------------------------~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~V 295 (704)
+...+..+.|+|||+-|+.+.|.+||+..++|.+-+|||||+||||+|||+|+||
T Consensus 573 De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYV 652 (1172)
T KOG0926|consen 573 DENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYV 652 (1172)
T ss_pred cccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEE
Confidence 0002346789999999999999999999999999999999999999999999999
Q ss_pred EeCCccccccccCCCCccccccccccHHhHHhhccccCCCCCceEEEecCCccccccCCCCCCCccccCChHHHHHhhcc
Q 005291 296 IDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKS 375 (704)
Q Consensus 296 Id~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~ 375 (704)
||||+.|.+.||..+|+..+.+.|||++++.||+|||||++||+|||||+...|+++|.++..|||++.+.++++|++|+
T Consensus 653 VD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKs 732 (1172)
T KOG0926|consen 653 VDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKS 732 (1172)
T ss_pred EeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred cCccccccccccCCCCCCHHHHHHHHHHHHHcccccCCCCCCHHHHHHhcCCCChHhHHHHHHhhhcCCHHHHHHHHHHh
Q 005291 376 LDLSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAML 455 (704)
Q Consensus 376 l~~~~~~~~~~~~~~~P~~~~l~~al~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~l~i~a~l 455 (704)
|+|++ +.+|||++||+..+++.|.+.|..|||||.+|.||++|+.||.|||.|++||||+.+.+.+|+...+.++++|
T Consensus 733 MnI~k--VvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~lvsaL 810 (1172)
T KOG0926|consen 733 MNIDK--VVNFPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPYNIALVSAL 810 (1172)
T ss_pred cCccc--eecCCCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcchhHHHHHHHHH
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccCCCCc----------hHH----------------------HHhhcCCCCCCCCCCCCCHHHHHHHHHHhhhcC
Q 005291 456 SAETTLLPGRSK----------STE----------------------KKRKHTPLELPDGSGWGDHIQLLQIYECWDECD 503 (704)
Q Consensus 456 s~~~~f~~~~~~----------~~~----------------------~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~ 503 (704)
|+..+|+..... .++ ...++.+|+ ...||-++++.+..++....
T Consensus 811 sv~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~----~l~sd~l~Ll~Av~a~ey~~ 886 (1172)
T KOG0926|consen 811 SVYEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFS----NLDSDALVLLSAVSAAEYAE 886 (1172)
T ss_pred hccchhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhc----cCCccHHHHHHHHHHHHhhh
Confidence 999887642111 111 012334565 55689999999999998877
Q ss_pred CchHHHHHccccccccccHHHHHHHHHHHHHHhcCC----CcccccccccccchhhHHHHHHHHHhhcchhhhhhhcCCC
Q 005291 504 YDVNWVKDNGLQVRGMMFVKDIRKQLCQIMQKIAKG----SLDVRANHIWKESRQDYRKLRKALCVGYANQLAERMIHHN 579 (704)
Q Consensus 504 ~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~va~~~~~~~ 579 (704)
+...||..|||..++|..++++|+||..++...+.. .-+....+ ........+++.+|+||.++||++.+. .
T Consensus 887 ~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~p---pt~~q~~lLrQ~i~Ag~~DrVArk~~~-~ 962 (1172)
T KOG0926|consen 887 NGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKP---PTDTQAKLLRQMICAGFADRVARKVDA-T 962 (1172)
T ss_pred hcchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCC---CchHHHHHHHHHHHHHHHHHHHHhccc-c
Confidence 777899999999999999999999999998744310 00000011 223456689999999999999998754 4
Q ss_pred ceeEecccCCeEEECCCCCCCCcCCCCCCCEEEEEeecccccchhhh-ccccCHhhHHHHhccccccc
Q 005291 580 GYRTLGFKPQLVQVHPSSELKTDEEGLLPNYVVYHELIATSRPYMRN-VCAVEMQWVMPILKKLEKID 646 (704)
Q Consensus 580 ~y~~~~~~~~~~~ihpsS~l~~~~~~~~~~~ivy~e~~~t~~~~~r~-~~~i~~~wl~~~~~~~~~~~ 646 (704)
.|.+. .-+..++|||+|+|++ ..|+||+|.|++.|...||.+ +|.|.|+||..+++.|+++.
T Consensus 963 ~y~~~-~i~~~~fl~~~svl~~----~ape~viY~el~~~~~~~~~~~v~~v~pewl~~~~~slcn~~ 1025 (1172)
T KOG0926|consen 963 EYDAA-KIQEPVFLHRWSVLIN----SAPELVIYQELLLTNRPYMHGGVTAVRPEWLLNHAKSLCNFS 1025 (1172)
T ss_pred ccchh-hhcCceeeeehhhhhc----cCccceehhhhhhcCCcccccceEEEchHHHHhhhhhhcccc
Confidence 57766 4577899999999984 569999999999999876655 99999999999999876543
No 9
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=4.2e-111 Score=949.85 Aligned_cols=633 Identities=35% Similarity=0.570 Sum_probs=556.3
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCC--CCcEEEEcchhhHHHHHHHHHHHHHhCCccCce
Q 005291 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYT--KSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (704)
Q Consensus 3 ~LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~--~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~ 80 (704)
+||+|+++++|++++.++++++|+|+||||||||+||++++.... ...+|+|+||||+.|+++|+||+.+++...|..
T Consensus 171 ~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~ 250 (924)
T KOG0920|consen 171 SLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEE 250 (924)
T ss_pred hCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCe
Confidence 699999999999999999999999999999999999999987543 234899999999999999999999999999999
Q ss_pred eeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 81 vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
|||++|.++..+..+.+.|||+|.|+|.++.++.+.++++||+||+|||++++|+++-+++.++..+| ++|+|+||||+
T Consensus 251 VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p-~LkvILMSAT~ 329 (924)
T KOG0920|consen 251 VGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP-DLKVILMSATL 329 (924)
T ss_pred eeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC-CceEEEeeeec
Confidence 99999999999989999999999999999999999999999999999999999999999999999997 99999999999
Q ss_pred ChHHHhcccCCCCccccCCCcCceeEEecCCC----------Ccch---------------------HHHHHHHHHHHHc
Q 005291 161 DGEKVSKFFSNCPTLNVPGKLYPVEILHSKER----------PTSY---------------------LESALKTAIDIHV 209 (704)
Q Consensus 161 ~~~~~~~~~~~~~~i~i~~~~~pv~~~~~~~~----------~~~~---------------------~~~~~~~~~~i~~ 209 (704)
|.+.|+.||++|+++.++|++|||..+|.++. ...+ .+.....+..++.
T Consensus 330 dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~ 409 (924)
T KOG0920|consen 330 DAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDE 409 (924)
T ss_pred chHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhccc
Confidence 99999999999999999999999998875421 0001 1122233444556
Q ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccC
Q 005291 210 REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV 289 (704)
Q Consensus 210 ~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidi 289 (704)
....|.||||+||.++|..+++.|.......+ ...+.+.++|+.|+.++|+.||...+.|.+|||+||||||+||||
T Consensus 410 ~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~---~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITI 486 (924)
T KOG0920|consen 410 REFEGAILVFLPGWEEILQLKELLEVNLPFAD---SLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITI 486 (924)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHhhhcccccc---ccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccc
Confidence 66689999999999999999999976532211 136899999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCCCceEEEecCCccccccCCCCCCCccccCChHHH
Q 005291 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGS 369 (704)
Q Consensus 290 p~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~~~~~~~~~~~pei~r~~l~~~ 369 (704)
|+|.||||+|+.|++.|||..++..+...|+|++++.||+|||||.++|.||+||++..|+..+..+++|||+|.+|.++
T Consensus 487 dDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l 566 (924)
T KOG0920|consen 487 DDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTPLEEL 566 (924)
T ss_pred cCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhhhcccccCChHHHhChHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999555599999999999999
Q ss_pred HHhhcccCccccccccccCCCCCCHHHHHHHHHHHHHcccccCCCCCCHHHHHHhcCCCChHhHHHHHHhhhcCCHHHHH
Q 005291 370 VLYLKSLDLSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQAL 449 (704)
Q Consensus 370 ~L~l~~l~~~~~~~~~~~~~~~P~~~~l~~al~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~l 449 (704)
+|++|.+++.++.-.....+|||+.+++..|+..|..+||||.+.+||++|++|+.||+||++|||++.|..|+|+++++
T Consensus 567 ~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g~if~cLdp~l 646 (924)
T KOG0920|consen 567 CLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGAIFGCLDPAL 646 (924)
T ss_pred hheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHhCCCccccchhheehhhccccchhh
Confidence 99999999988332233678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCcccCCCCchHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHhhh---c--CCchHHHHHccccccccccHHH
Q 005291 450 TVAAMLSAETTLLPGRSKSTEKKRKHTPLELPDGSGWGDHIQLLQIYECWDE---C--DYDVNWVKDNGLQVRGMMFVKD 524 (704)
Q Consensus 450 ~i~a~ls~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~---~--~~~~~~c~~~~l~~~~l~~~~~ 524 (704)
+|||+|+.++||+.|.+++++++.+++.|.. ...|||++++++|+.|.. . .....||++|+|+..+|+++.+
T Consensus 647 ~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~---~~~SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~~~l~~i~~ 723 (924)
T KOG0920|consen 647 TIAAALSFKSPFVSPLGKREEADKAKKLLAL---DSISDHLAVVRAYAGWREILRSGPSAEKDFCEENFLSSNTLQEISS 723 (924)
T ss_pred hHHHHhccCCCcccCCCchhHHHHHHHHhcc---CCcchHHHHHHHHHHHHHHHhccchHHHHHHHHhhccHHHHHHHHH
Confidence 9999999999999999999999988888771 236999999999999987 2 3567999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCccc---ccccccccchhhHHHHHHHHHhhcchhhhhhhc---CCCceeEecccCCeEEECCCCC
Q 005291 525 IRKQLCQIMQKIAKGSLDV---RANHIWKESRQDYRKLRKALCVGYANQLAERMI---HHNGYRTLGFKPQLVQVHPSSE 598 (704)
Q Consensus 525 ~~~ql~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~l~~g~~~~va~~~~---~~~~y~~~~~~~~~~~ihpsS~ 598 (704)
++.|+.+.+..++.-.... .....++.+..+.+.++++||+|+|||+|+... ........+.....+.+||+|+
T Consensus 724 l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i~~~~~~~~~~~~~~~~~~~~~~v~i~~~sv 803 (924)
T KOG0920|consen 724 LRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNIAFVRRMEPKSKSVTFVTKADGRVIIHPSSV 803 (924)
T ss_pred HHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCceeeeecccCCcCcceeecCCceeEEEecchh
Confidence 9999999999887322110 111223455668899999999999999998663 2222222222346899999999
Q ss_pred CCCcCCCCCCCEEEEEeeccccc-chhhhccccCHhhHHHHhcccc
Q 005291 599 LKTDEEGLLPNYVVYHELIATSR-PYMRNVCAVEMQWVMPILKKLE 643 (704)
Q Consensus 599 l~~~~~~~~~~~ivy~e~~~t~~-~~~r~~~~i~~~wl~~~~~~~~ 643 (704)
.+... ....+|++|++.+.|++ .|+|++|.+.+-.+..+.....
T Consensus 804 ~~~~~-~~~~p~l~~~~k~~t~~~~~~rd~T~v~~~~~llfgg~~~ 848 (924)
T KOG0920|consen 804 NEQST-GFQSPFLVFPEKVKSTRLVSLRDTTSVSSSALLLFGGGIS 848 (924)
T ss_pred hcccc-ccCCcceEEeeecccCCcceeeecCCCCcHHheeecCCce
Confidence 87533 23344999999999999 9999999999999999987654
No 10
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=6.2e-96 Score=848.75 Aligned_cols=565 Identities=30% Similarity=0.468 Sum_probs=492.7
Q ss_pred CCCCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCce
Q 005291 1 MANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (704)
Q Consensus 1 m~~LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~ 80 (704)
|++|||++++++|++++.++++++++|||||||||++|+++++.... +++|+|++|||++|.+++++++++++..+|..
T Consensus 1 ~~~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~ 79 (812)
T PRK11664 1 MSSLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-NGKIIMLEPRRLAARNVAQRLAEQLGEKPGET 79 (812)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-CCeEEEECChHHHHHHHHHHHHHHhCcccCce
Confidence 78999999999999999999999999999999999999998876543 45899999999999999999999999999999
Q ss_pred eeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 81 vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+||.+++++..+..++|+|+|+|+|++++..++.++++++|||||+|||++++|+.+.+++.++...++++|+|+||||+
T Consensus 80 VGy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl 159 (812)
T PRK11664 80 VGYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATL 159 (812)
T ss_pred EEEEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCC
Confidence 99999999988888999999999999999999999999999999999999999999998888877554589999999999
Q ss_pred ChHHHhcccCCCCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhc
Q 005291 161 DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (704)
Q Consensus 161 ~~~~~~~~~~~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~ 240 (704)
+.+.+++||++++++.++|+.|||+.+|......+++...+..++........|++|||+||+++|+.+++.|.+...
T Consensus 160 ~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~-- 237 (812)
T PRK11664 160 DNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVA-- 237 (812)
T ss_pred CHHHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhcc--
Confidence 999999999999999999999999999987766666665554444444445579999999999999999999986421
Q ss_pred CCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccc
Q 005291 241 DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQI 320 (704)
Q Consensus 241 ~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~i 320 (704)
.++.+.++||+|+.++|.++++.|++|++|||||||+||+|||||+|++|||+|++|...|||.+|++.|.+.+|
T Consensus 238 -----~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~i 312 (812)
T PRK11664 238 -----SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRI 312 (812)
T ss_pred -----CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEee
Confidence 268899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHhHHhhccccCCCCCceEEEecCCccccccCCCCCCCccccCChHHHHHhhcccCccccccccccCCCCCCHHHHHHH
Q 005291 321 SKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDA 400 (704)
Q Consensus 321 S~~~~~QR~GRaGR~~~G~c~~L~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~l~~~~~~~~~~~~~~~P~~~~l~~a 400 (704)
|+++|.||+|||||.++|+||+||+++++.. |++++.|||+|++|++++|+++++|+.+ +..|+|+|||+..++..|
T Consensus 313 Skasa~QR~GRaGR~~~G~cyrL~t~~~~~~-l~~~~~PEI~r~dL~~~~L~l~~~g~~~--~~~~~~ld~P~~~~~~~A 389 (812)
T PRK11664 313 SQASMTQRAGRAGRLEPGICLHLYSKEQAER-AAAQSEPEILHSDLSGLLLELLQWGCHD--PAQLSWLDQPPAAALAAA 389 (812)
T ss_pred chhhhhhhccccCCCCCcEEEEecCHHHHhh-CccCCCCceeccchHHHHHHHHHcCCCC--HHhCCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999987 9999999999999999999999999988 788999999999999999
Q ss_pred HHHHHHcccccCCCCCCHHHHHHhcCCCChHhHHHHHHhhhcCCHH--HHHHHHHHhccCCcccCCCCchHHHHhhcCCC
Q 005291 401 LKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLS--QALTVAAMLSAETTLLPGRSKSTEKKRKHTPL 478 (704)
Q Consensus 401 l~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~--~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~~ 478 (704)
++.|+.+||||++|+||++|+.|++||++|++|+||+.|..+||.. .++.+||+|+.++. .
T Consensus 390 ~~~L~~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~~~--~--------------- 452 (812)
T PRK11664 390 KRLLQQLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEPPR--S--------------- 452 (812)
T ss_pred HHHHHHCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccCCC--C---------------
Confidence 9999999999999999999999999999999999999999999764 67788888876531 0
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCchHHHHHccccccccccHHHHHHHHHHHHHHhcCCCcccccccccccchhhHHH
Q 005291 479 ELPDGSGWGDHIQLLQIYECWDECDYDVNWVKDNGLQVRGMMFVKDIRKQLCQIMQKIAKGSLDVRANHIWKESRQDYRK 558 (704)
Q Consensus 479 ~~~~~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (704)
..+|....+..+. ..|+ +.+.++.+|+.... + . . +.+.
T Consensus 453 ------~~~d~~~~l~~~~--------~~~~----------~~~~~~~~~~~~~~---~---~---------~---~~~~ 490 (812)
T PRK11664 453 ------GSSDLGVALSRKQ--------PHWQ----------QRAQQLLKRLNVRG---G---E---------A---DSSL 490 (812)
T ss_pred ------CcccHHHHHHHHH--------HHHH----------HHHHHHHHHHHhhc---c---c---------C---ChHH
Confidence 0234433333221 2342 23444555543211 1 0 0 2234
Q ss_pred HHHHHHhhcchhhhhhhcCCCceeEecccCCeEEECCCCCCCCcCCCCCCCEEEEEeecccc-c--chhhhccccCHhhH
Q 005291 559 LRKALCVGYANQLAERMIHHNGYRTLGFKPQLVQVHPSSELKTDEEGLLPNYVVYHELIATS-R--PYMRNVCAVEMQWV 635 (704)
Q Consensus 559 i~~~l~~g~~~~va~~~~~~~~y~~~~~~~~~~~ihpsS~l~~~~~~~~~~~ivy~e~~~t~-~--~~~r~~~~i~~~wl 635 (704)
+..||+.||+++||++....+.|.+.+ |..+++||+|.|.. .+|+|++|++.++ + ..|+.+++|+++||
T Consensus 491 ~~~~la~aypdriA~~r~~~~~~~l~~--G~~a~l~~~~~l~~------~~~lv~a~~~~~~~~~~~ri~~a~~l~~~~l 562 (812)
T PRK11664 491 IAPLLALAFPDRIARRRGQDGRYQLAN--GMGAMLDADDALSR------HEWLIAPLLLQGSASPDARILLALPLDIDEL 562 (812)
T ss_pred HHHHHHHHCHHHHhhhcCCCCeEEeeC--CCeEEECCCCcccC------CCeEEEEEhhccCccccceeeEeeccCHHHH
Confidence 788999999999999875545577764 99999999999974 6999999997653 3 46889999999999
Q ss_pred HHHhcccc
Q 005291 636 MPILKKLE 643 (704)
Q Consensus 636 ~~~~~~~~ 643 (704)
.+.+|..+
T Consensus 563 ~~~~~~~~ 570 (812)
T PRK11664 563 VQRCPQLV 570 (812)
T ss_pred HHHHHHhc
Confidence 99999874
No 11
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.2e-95 Score=844.05 Aligned_cols=573 Identities=31% Similarity=0.472 Sum_probs=497.0
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
|||++++++|++++.++++++++|+|||||||++|+++++... .+++|+|++|||++|.+++++++++++..+|..|||
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 8999999999999999999999999999999999999887653 356999999999999999999999999999999999
Q ss_pred eeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChH
Q 005291 84 AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGE 163 (704)
Q Consensus 84 ~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~ 163 (704)
.+++++..+.+++|+|+|+|+|++++..++.++++++|||||+|||++++|+.+.+++.+....++++|+|+||||++.+
T Consensus 80 ~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~ 159 (819)
T TIGR01970 80 RVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE 159 (819)
T ss_pred EEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH
Confidence 99999998888999999999999999999999999999999999999999999998888877555599999999999999
Q ss_pred HHhcccCCCCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCC
Q 005291 164 KVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEG 243 (704)
Q Consensus 164 ~~~~~~~~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~ 243 (704)
.+.+||++++++.++|+.|||+++|......+++...+...+........|++|||+||+++|+.+++.|.+...
T Consensus 160 ~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~----- 234 (819)
T TIGR01970 160 RLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLD----- 234 (819)
T ss_pred HHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcC-----
Confidence 999999999999999999999999987665555544443333333344578999999999999999999987531
Q ss_pred CCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHH
Q 005291 244 SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKV 323 (704)
Q Consensus 244 ~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~ 323 (704)
.++.++++||+|+.++|.++|+.|++|++|||||||+||+|||||+|++|||+|++|.+.||+.+|++.|.+.|||++
T Consensus 235 --~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSka 312 (819)
T TIGR01970 235 --SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQA 312 (819)
T ss_pred --CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHH
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhccccCCCCCceEEEecCCccccccCCCCCCCccccCChHHHHHhhcccCccccccccccCCCCCCHHHHHHHHHH
Q 005291 324 QANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDALKQ 403 (704)
Q Consensus 324 ~~~QR~GRaGR~~~G~c~~L~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~l~~~~~~~~~~~~~~~P~~~~l~~al~~ 403 (704)
+|.||+|||||.++|+||+||+++++.. |.+++.|||+|++|++++|+++.+|+.+ +..|+|+|||+..++..|++.
T Consensus 313 sa~QR~GRAGR~~~G~cyrL~t~~~~~~-l~~~~~PEI~r~~L~~~~L~l~~~g~~~--~~~~~~l~~P~~~~i~~a~~~ 389 (819)
T TIGR01970 313 SATQRAGRAGRLEPGVCYRLWSEEQHQR-LPAQDEPEILQADLSGLALELAQWGAKD--PSDLRWLDAPPSVALAAARQL 389 (819)
T ss_pred HHHhhhhhcCCCCCCEEEEeCCHHHHHh-hhcCCCcceeccCcHHHHHHHHHcCCCC--hhhCCCCCCcCHHHHHHHHHH
Confidence 9999999999999999999999999987 9999999999999999999999999988 788999999999999999999
Q ss_pred HHHcccccCCCCCCHHHHHHhcCCCChHhHHHHHHhhhcCCHHHHHHHHHHhccCCcccCCCCchHHHHhhcCCCCCCCC
Q 005291 404 LYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGRSKSTEKKRKHTPLELPDG 483 (704)
Q Consensus 404 L~~lgald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~~~~~~~ 483 (704)
|+.+||||.+|+||++|+.|++||+||++||||+.|..+||.+++++|||+||+++++-
T Consensus 390 L~~lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~~--------------------- 448 (819)
T TIGR01970 390 LQRLGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPR--------------------- 448 (819)
T ss_pred HHHCCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCCC---------------------
Confidence 99999999999999999999999999999999999999999999999999999988641
Q ss_pred CCCCCHHHHHHHHHHhhhcCCchHHHHHccccccccccHHHHHHHHHHHHHHhcCCCcccccccccccchhhHHHHHHHH
Q 005291 484 SGWGDHIQLLQIYECWDECDYDVNWVKDNGLQVRGMMFVKDIRKQLCQIMQKIAKGSLDVRANHIWKESRQDYRKLRKAL 563 (704)
Q Consensus 484 ~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 563 (704)
...+|....+..++.. ....|. .+.++.+|+...+... ..... ... +. .+..+|
T Consensus 449 ~~~~d~~~~~~~~~~~-----~~~~~~----------~~~~~~~~~~~~~~~~-~~~~~-------~~~--~~-~~g~ll 502 (819)
T TIGR01970 449 QGGADLMNRLHRLQQG-----RQGRGQ----------RAQQLAKKLRRRLRFS-QADSG-------AIA--SH-ALGLLL 502 (819)
T ss_pred CCcccHHHHHHHHhhc-----chhhHH----------HHHHHHHHHHHHhCcC-cCCCc-------ccc--cc-hHhHHH
Confidence 1135876666655431 111121 2344555554432110 00000 000 01 156689
Q ss_pred HhhcchhhhhhhcCCCceeEecccCCeEEECCCCCCCCcCCCCCCCEEEEEeecccc---cchhhhccccCHhhHHHHhc
Q 005291 564 CVGYANQLAERMIHHNGYRTLGFKPQLVQVHPSSELKTDEEGLLPNYVVYHELIATS---RPYMRNVCAVEMQWVMPILK 640 (704)
Q Consensus 564 ~~g~~~~va~~~~~~~~y~~~~~~~~~~~ihpsS~l~~~~~~~~~~~ivy~e~~~t~---~~~~r~~~~i~~~wl~~~~~ 640 (704)
+.||+++||++..+.+.|.+.+ |..+.++|.|.|.. .+|++..++..++ ...|+.+++|+++|+.+.++
T Consensus 503 a~a~pdria~~r~~~~~y~l~~--G~~~~l~~~~~l~~------~~~l~~a~~~~~~~~~~~~i~~a~~i~~~~~~~~~~ 574 (819)
T TIGR01970 503 ALAFPDRIAKRRGQPGRYQLAN--GRGAVLSAEDALAR------EPWLVAADLGEGQGKTAARILLAAPVDEALLRQVLP 574 (819)
T ss_pred hhhChHhheeccCCCCeEECCC--CCeeEeCCCCcccC------CCeEEEEEeeccCCccccceeeeccCCHHHHHHHhH
Confidence 9999999999875545698875 99999999999975 6999999997442 35788999999999999988
Q ss_pred cc
Q 005291 641 KL 642 (704)
Q Consensus 641 ~~ 642 (704)
+.
T Consensus 575 ~~ 576 (819)
T TIGR01970 575 DL 576 (819)
T ss_pred HH
Confidence 76
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=8.1e-65 Score=551.23 Aligned_cols=655 Identities=28% Similarity=0.413 Sum_probs=537.3
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc----EEEEcchhhHHHHHHHHHHHHHhCCccC
Q 005291 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG----IIGVTQPRRVAAVSVARRVAQELGVRLG 78 (704)
Q Consensus 3 ~LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~----~ilv~~P~r~la~~~a~rva~~~~~~vg 78 (704)
+||+..++++|++++..+++++|.|+||+||||++.+++++....++. .+.+.+|||..++.++++++++.+..+|
T Consensus 376 ~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g 455 (1282)
T KOG0921|consen 376 ELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVG 455 (1282)
T ss_pred hCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhc
Confidence 699999999999999999999999999999999999999987654332 5788999999999999999999999999
Q ss_pred ceeeeeeecccccC-cccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEe
Q 005291 79 EEVGYAIRFEDRTS-ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (704)
Q Consensus 79 ~~vg~~~~~~~~~~-~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~S 157 (704)
.++||++|+++.++ +..-|.+||.|.+++.+.+. +..++++|+||.|||..++|+++.+++.+....+ ++++++||
T Consensus 456 ~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g--lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~-dl~v~lms 532 (1282)
T KOG0921|consen 456 ETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG--LRGISHVIIDEIHERDVDTDFVLIVLREMISTYR-DLRVVLMS 532 (1282)
T ss_pred ccccccccccccccccccceeeeccchhhhhhhhc--ccccccccchhhhhhccchHHHHHHHHhhhccch-hhhhhhhh
Confidence 99999999999887 44678899999999998653 6789999999999999999999999999998887 99999999
Q ss_pred cCCChHHHhcccCCCCccccCCCcCceeEEecCCC-------------------------Ccc-------------hH--
Q 005291 158 ATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKER-------------------------PTS-------------YL-- 197 (704)
Q Consensus 158 ATl~~~~~~~~~~~~~~i~i~~~~~pv~~~~~~~~-------------------------~~~-------------~~-- 197 (704)
||+|.+.|..||+.+|.+.+.|+++|+..+|.... ..+ |.
T Consensus 533 atIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~ 612 (1282)
T KOG0921|consen 533 ATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNES 612 (1282)
T ss_pred cccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcch
Confidence 99999999999999999999999999876653210 000 00
Q ss_pred --------------HHHHHHH-HHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHH
Q 005291 198 --------------ESALKTA-IDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQ 262 (704)
Q Consensus 198 --------------~~~~~~~-~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r 262 (704)
....+.+ ..+....-.|.||||+|+..++..++.+|...-. .+....+.++++|+.++..+|
T Consensus 613 ~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~---fg~~~~y~ilp~Hsq~~~~eq 689 (1282)
T KOG0921|consen 613 TRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQE---FGQANKYEILPLHSQLTSQEQ 689 (1282)
T ss_pred hhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhh---hccchhcccccchhhcccHhh
Confidence 0011111 1223334468999999999999999998865421 112246889999999999999
Q ss_pred hhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCCCceEEE
Q 005291 263 VRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYR 342 (704)
Q Consensus 263 ~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~ 342 (704)
.+||+..+.|..|+|++||++++++||+++.+|||++..+.+.|-....+....+.|.|+-+..||.||+||.++|.||+
T Consensus 690 rkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~ 769 (1282)
T KOG0921|consen 690 RKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFH 769 (1282)
T ss_pred hhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCccccccCCCCCCCccccCChHHHHHhhcccCccccccccccCCCCCCHHHHHHHHHHHHHcccccCCCCCCHHHHH
Q 005291 343 LYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSIGRT 422 (704)
Q Consensus 343 L~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~l~~~~~~~~~~~~~~~P~~~~l~~al~~L~~lgald~~~~lT~lG~~ 422 (704)
++++..|+. +.++..||+.|.++.++.|.+|.+.+..+.....--+.||+.+++..+-..|..++++|.++.+|++|+.
T Consensus 770 lcs~arF~~-l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~ 848 (1282)
T KOG0921|consen 770 LCSRARFEA-LEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPLGRM 848 (1282)
T ss_pred ccHHHHHHH-HHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccchhhh
Confidence 999999998 9999999999999999999999887766334444678999999999999999999999999999999999
Q ss_pred HhcCCCChHhHHHHHHhhhcCCHHHHHHHHHHhccCCcccCCCCch-----HHHHhhcCCCCCCCCCCCCCHHHHHHHHH
Q 005291 423 MAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGRSKS-----TEKKRKHTPLELPDGSGWGDHIQLLQIYE 497 (704)
Q Consensus 423 ~~~lpl~p~~~~~ll~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~-----~~~~~~~~~~~~~~~~~~~D~~~~l~~~~ 497 (704)
++.+|++|++++|++.+..++|.+-|+.+|+.+|...+|+.-.... .....++.+|+ +|-.+||...+..++
T Consensus 849 la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~g~kfs---dhva~~~v~q~~r~~ 925 (1282)
T KOG0921|consen 849 LARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAGNKFS---DHVAIVSVIQGYREA 925 (1282)
T ss_pred hhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchhhccccccc---cchhhhhhhhhhHHH
Confidence 9999999999999999999999999999999999988776532111 11223445555 355677777788888
Q ss_pred HhhhcCCchHHHHHccccccccccHHHHHHHHHHHHHHhcCCCcccccccc--cccchhhHHHHHHHHHhhcchhhhhhh
Q 005291 498 CWDECDYDVNWVKDNGLQVRGMMFVKDIRKQLCQIMQKIAKGSLDVRANHI--WKESRQDYRKLRKALCVGYANQLAERM 575 (704)
Q Consensus 498 ~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~l~~g~~~~va~~~ 575 (704)
.|......++||.+++++.+.|......+.||...|+....+. ++..... .+..+.+....+..||.+.|+|+|.+.
T Consensus 926 ~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~fpe-~~~~~~~v~~ng~d~~l~~~~~lL~~~lypn~~~y~ 1004 (1282)
T KOG0921|consen 926 VQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLRQCSFPE-DILFDISVNVNGPDRELNLMRSLLVMALYPNVAYYV 1004 (1282)
T ss_pred hhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHHhccCcc-ccccceeeccCCCCchhHHHHHHHHhhcCCccceec
Confidence 8877666789999999999999999999999999998554221 1100111 112223445677889999999999776
Q ss_pred cCCCceeEecccCCeEEECCCCCCCC---cCCCCCCCEEEEEeecccccchhhhccccCHhhHHHHhccccccc---ccc
Q 005291 576 IHHNGYRTLGFKPQLVQVHPSSELKT---DEEGLLPNYVVYHELIATSRPYMRNVCAVEMQWVMPILKKLEKID---INK 649 (704)
Q Consensus 576 ~~~~~y~~~~~~~~~~~ihpsS~l~~---~~~~~~~~~ivy~e~~~t~~~~~r~~~~i~~~wl~~~~~~~~~~~---~~~ 649 (704)
.+ ..-.| .++....||-+|++.. .....+.+|+||.|.++|.-.-.+..|-|+|-.|..|+.+-.+.| +..
T Consensus 1005 ek-rkvLt--Te~~~alihk~Svncp~S~qdM~fPsPFFVFGEKIRTRAIS~K~MslVsPLQLLLF~SrKVqsdgq~IV~ 1081 (1282)
T KOG0921|consen 1005 EK-RKVLT--TEQSSALIHKYSVNCPNSRQEMDFPSPFFVFGEKIRTRAISCKQMSLVSPLQLLLFGSRKVQSDGQGIVR 1081 (1282)
T ss_pred cc-eeEEe--ecchhhhhhhhcccCCCcccccCCCCceeeechhhhhheecccCccccChHHHhhhhhhhccccCcceEE
Confidence 43 22223 3466677888887652 234467799999999999999999999999999999998764433 335
Q ss_pred ccCCCCC-cchhhhhhcCCChhh
Q 005291 650 LSGGAGQ-MEEASEKKLTDMPET 671 (704)
Q Consensus 650 l~~~~~~-~~~~~~~~~~~~~~~ 671 (704)
+..|+.- .+.+.+...+.+.++
T Consensus 1082 VDdWIklqIshEaAAcItgLr~A 1104 (1282)
T KOG0921|consen 1082 VDDWIKLQISHEAAACITGLRPA 1104 (1282)
T ss_pred eeceeeEeccHHHHHHHhhhHHH
Confidence 5566655 566666666655544
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=6.5e-59 Score=526.47 Aligned_cols=391 Identities=21% Similarity=0.322 Sum_probs=310.6
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcC--------------CCCCcEEEEcchhhHHHHHHHHHHHHHh
Q 005291 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHG--------------YTKSGIIGVTQPRRVAAVSVARRVAQEL 73 (704)
Q Consensus 8 ~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~--------------~~~~~~ilv~~P~r~la~~~a~rva~~~ 73 (704)
..|+++++.+.+|++++++|+|||||||++|+++++.. ...+..++|++|||++|.|++.++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 46778999999999999999999999999999987531 1124589999999999999999998877
Q ss_pred CCccCceeeeeeecccccC-------cccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHH
Q 005291 74 GVRLGEEVGYAIRFEDRTS-------ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (704)
Q Consensus 74 ~~~vg~~vg~~~~~~~~~~-------~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~ 146 (704)
|......+...++++.... ...+|+++|++. ..+.+.++++|||||||||+.++|.++.+++.+...
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L------~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~ 320 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL------TLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK 320 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc------cccccccCCEEEccccccCccchhHHHHHHHHhhhh
Confidence 6532221222344433321 235688999763 234688999999999999999999998888766533
Q ss_pred hccCcEEEEEecCCCh--HHHhcccCCCCccccCCCc-CceeEEecCCCC-----cchHHHHHHHHHHHHc---cCCCCC
Q 005291 147 RASKLKILITSATLDG--EKVSKFFSNCPTLNVPGKL-YPVEILHSKERP-----TSYLESALKTAIDIHV---REPEGD 215 (704)
Q Consensus 147 ~~~~~kiI~~SATl~~--~~~~~~~~~~~~i~i~~~~-~pv~~~~~~~~~-----~~~~~~~~~~~~~i~~---~~~~g~ 215 (704)
..|+++||||++. +.+.+||++++.+.++|+. +|++.+|..... .+|.......+...+. ...+++
T Consensus 321 ---~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~ 397 (675)
T PHA02653 321 ---IRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSS 397 (675)
T ss_pred ---cCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCc
Confidence 2489999999954 5688999999999999985 999999865432 2333333233333332 234579
Q ss_pred EEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCC-CCCCcEEEEEcccccccccCCCeEE
Q 005291 216 VLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPP-PPNCRRFIVSTNIAETSLTVDGVVY 294 (704)
Q Consensus 216 iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~-~~g~~kIlvaTniae~gidip~v~~ 294 (704)
+|||+||+++++.+++.|.+.. +++.+.++||+|++.++ +++.| ++|+++||||||+||+|||||+|++
T Consensus 398 iLVFlpg~~ei~~l~~~L~~~~--------~~~~v~~LHG~Lsq~eq--~l~~ff~~gk~kILVATdIAERGIDIp~V~~ 467 (675)
T PHA02653 398 GIVFVASVSQCEEYKKYLEKRL--------PIYDFYIIHGKVPNIDE--ILEKVYSSKNPSIIISTPYLESSVTIRNATH 467 (675)
T ss_pred EEEEECcHHHHHHHHHHHHhhc--------CCceEEeccCCcCHHHH--HHHHHhccCceeEEeccChhhccccccCeeE
Confidence 9999999999999999998652 36889999999997643 33343 6789999999999999999999999
Q ss_pred EEeCCccccccccCCCCccccccccccHHhHHhhccccCCCCCceEEEecCCccccccCCCCCCCccccCC---hHHHHH
Q 005291 295 VIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSS---LAGSVL 371 (704)
Q Consensus 295 VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~~~~~~~~~~~pei~r~~---l~~~~L 371 (704)
|||+|++|.+. +..|+ ..|+|+++|.||+|||||.++|.||+||+++++ .| |++.+ |.+++|
T Consensus 468 VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~--------~p-I~ri~~~~L~~~vL 532 (675)
T PHA02653 468 VYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLL--------KP-IKRIDSEFLHNYIL 532 (675)
T ss_pred EEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHHh--------HH-HHHHhHHHHHHHHH
Confidence 99999988663 44554 469999999999999999999999999999864 23 55555 899999
Q ss_pred hhcccCccccccccccCCCCCCHHHHHHHHHHHHHcccccCCCCCCHH--HHHHhcCCCChHhHHHHHHhhh
Q 005291 372 YLKSLDLSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSI--GRTMAELPLEPSLSRMLMEANE 441 (704)
Q Consensus 372 ~l~~l~~~~~~~~~~~~~~~P~~~~l~~al~~L~~lgald~~~~lT~l--G~~~~~lpl~p~~~~~ll~~~~ 441 (704)
++++||++. ..+.|+|||+.+++..|++.|..+||+|+ +||.+ |+.|+.+ +.||+++.|..
T Consensus 533 ~lk~~g~~~---~~~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~ 595 (675)
T PHA02653 533 YAKYFNLTL---PEDLFVIPSNLDRLRKTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGI 595 (675)
T ss_pred HHHHcCCCC---cccccCCCCCHHHHHHHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccH
Confidence 999999964 34559999999999999999999998865 79999 9999998 99999998854
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.7e-42 Score=403.67 Aligned_cols=431 Identities=17% Similarity=0.175 Sum_probs=290.2
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
..++++|.++++.+.+++++++++|||||||+.....+..... .+++++++.|+++++.|+++.+.+.. ..|..++.
T Consensus 21 ~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~-~~~k~v~i~P~raLa~q~~~~~~~l~--~~g~~v~~ 97 (674)
T PRK01172 21 FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFL-AGLKSIYIVPLRSLAMEKYEELSRLR--SLGMRVKI 97 (674)
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHH-hCCcEEEEechHHHHHHHHHHHHHHh--hcCCeEEE
Confidence 3468999999999999999999999999999776665554432 35678888999999999999887532 12333333
Q ss_pred eeecc---cccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHH---HHHHHHHHHHHHhccCcEEEEE
Q 005291 84 AIRFE---DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTD---ILLGLVKRLVNLRASKLKILIT 156 (704)
Q Consensus 84 ~~~~~---~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d---~l~~llk~l~~~~~~~~kiI~~ 156 (704)
.+... .......+|+++|++.+...+..++ .+.++++||+||+|+. .+.+ .+..++..+....+ +.++|+|
T Consensus 98 ~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l-~d~~rg~~le~ll~~~~~~~~-~~riI~l 175 (674)
T PRK01172 98 SIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHII-GDEDRGPTLETVLSSARYVNP-DARILAL 175 (674)
T ss_pred EeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhc-cCCCccHHHHHHHHHHHhcCc-CCcEEEE
Confidence 22111 1112457999999999887776655 5889999999999953 2222 23334444433344 8999999
Q ss_pred ecCC-ChHHHhcccCCCCccccCCCcCceeEEec--CCCCc---chHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHH
Q 005291 157 SATL-DGEKVSKFFSNCPTLNVPGKLYPVEILHS--KERPT---SYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLV 230 (704)
Q Consensus 157 SATl-~~~~~~~~~~~~~~i~i~~~~~pv~~~~~--~~~~~---~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~ 230 (704)
|||+ +...+++|++ +..+....+..|+++... ..... .........++... ...++++||||+++++++.++
T Consensus 176 SATl~n~~~la~wl~-~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~vLVF~~sr~~~~~~a 253 (674)
T PRK01172 176 SATVSNANELAQWLN-ASLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKET-VNDGGQVLVFVSSRKNAEDYA 253 (674)
T ss_pred eCccCCHHHHHHHhC-CCccCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHH-HhCCCcEEEEeccHHHHHHHH
Confidence 9999 6677999985 455666667777764321 11000 00000011111111 135689999999999999999
Q ss_pred HHHHHHhhhcCCC---------------CCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEE
Q 005291 231 SKLEDKIRSLDEG---------------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYV 295 (704)
Q Consensus 231 ~~L~~~~~~~~~~---------------~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~V 295 (704)
..|.+........ .+....+.++||+|+.++|..+++.|++|.++|||||+++++|||+|+..+|
T Consensus 254 ~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VI 333 (674)
T PRK01172 254 EMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVI 333 (674)
T ss_pred HHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEE
Confidence 9998764321100 0012358899999999999999999999999999999999999999998888
Q ss_pred EeCCccccccccCCCCccccccccccHHhHHhhccccCCCC---CceEEEecC-Ccccc---ccCCCCCCC--------c
Q 005291 296 IDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYP-STVYH---DEFLDVTVP--------E 360 (704)
Q Consensus 296 Id~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~---~G~c~~L~~-~~~~~---~~~~~~~~p--------e 360 (704)
|+ |. ..|+. ....++|..++.||+|||||.+ .|.++.+.. .++++ +.+...+.| +
T Consensus 334 I~-~~---~~~~~------~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~ 403 (674)
T PRK01172 334 VR-DI---TRYGN------GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQR 403 (674)
T ss_pred Ec-Cc---eEeCC------CCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcc
Confidence 75 22 22332 2235789999999999999984 677776643 33222 212222222 2
Q ss_pred cccCChHHHHHhhcccCccccccccc---cCC--CCCC---HHHHHHHHHHHHHcccccCCC--CCCHHHHHHhcCCCCh
Q 005291 361 IQRSSLAGSVLYLKSLDLSDINVLKF---DFL--DPPS---SESLEDALKQLYLIDAIDENG--SITSIGRTMAELPLEP 430 (704)
Q Consensus 361 i~r~~l~~~~L~l~~l~~~~~~~~~~---~~~--~~P~---~~~l~~al~~L~~lgald~~~--~lT~lG~~~~~lpl~p 430 (704)
+.+.++...+..-...+..+ +..| .|+ ++++ .+.++.|++.|.+.|+|+.++ .+|++|+.++.+|++|
T Consensus 404 ~~~~~~l~~i~~g~~~~~~d--~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~ 481 (674)
T PRK01172 404 KVRFNTLAAISMGLASSMED--LILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDP 481 (674)
T ss_pred cHHHHHHHHHHhcccCCHHH--HHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCH
Confidence 33333323332222223333 3333 444 4332 567899999999999998654 6799999999999999
Q ss_pred HhHHHHHHhhhcC-CHHHHHHHHH
Q 005291 431 SLSRMLMEANEFG-CLSQALTVAA 453 (704)
Q Consensus 431 ~~~~~ll~~~~~~-c~~~~l~i~a 453 (704)
..++.+..+.... -...++.+.+
T Consensus 482 ~t~~~~~~~l~~~~~~~~~l~~~~ 505 (674)
T PRK01172 482 ESALILKSAFDHDYDEDLALYYIS 505 (674)
T ss_pred HHHHHHHHHhhccCCHHHHHHHhh
Confidence 9999998877643 3344444443
No 15
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=4.8e-40 Score=385.66 Aligned_cols=514 Identities=17% Similarity=0.171 Sum_probs=324.9
Q ss_pred chHHHHHHHHH-hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHH--hCCccCceee
Q 005291 6 ILQYEETIVET-VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQE--LGVRLGEEVG 82 (704)
Q Consensus 6 i~~~~~~il~~-l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~--~~~~vg~~vg 82 (704)
++++|.+.++. +.+|+++++++|||||||......+.... ..+++++++.|+++++.|.++++.+. +|..++...|
T Consensus 24 l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l-~~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tG 102 (737)
T PRK02362 24 LYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAI-ARGGKALYIVPLRALASEKFEEFERFEELGVRVGISTG 102 (737)
T ss_pred CCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHH-hcCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 57889999887 88999999999999999955543333322 24678999999999999999998753 2444444444
Q ss_pred eeeecccccCcccceEEcchHHHHHHHHhC-CCCCCCceEEEeCCCcCCCCHH---HHHHHHHHHHHHhccCcEEEEEec
Q 005291 83 YAIRFEDRTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTD---ILLGLVKRLVNLRASKLKILITSA 158 (704)
Q Consensus 83 ~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~-~~l~~~~~IIiDEaHer~l~~d---~l~~llk~l~~~~~~~~kiI~~SA 158 (704)
.. ..........+|+++||+.+...+... .++.++++||+||+|. ..+.+ .+..++.++....+ +.|+|++||
T Consensus 103 d~-~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~-l~d~~rg~~le~il~rl~~~~~-~~qii~lSA 179 (737)
T PRK02362 103 DY-DSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHL-IDSANRGPTLEVTLAKLRRLNP-DLQVVALSA 179 (737)
T ss_pred Cc-CccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccc-cCCCcchHHHHHHHHHHHhcCC-CCcEEEEcc
Confidence 21 111112245789999999987777543 3688999999999994 33322 23334455444444 899999999
Q ss_pred CC-ChHHHhcccCCCCccccCCCcCceeEE--ecCC----CCc-----chHHHHHHHHHHHHccCCCCCEEEEeCCHHHH
Q 005291 159 TL-DGEKVSKFFSNCPTLNVPGKLYPVEIL--HSKE----RPT-----SYLESALKTAIDIHVREPEGDVLIFMTGQDDI 226 (704)
Q Consensus 159 Tl-~~~~~~~~~~~~~~i~i~~~~~pv~~~--~~~~----~~~-----~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i 226 (704)
|+ +.+.+.+|++. ..+....+..|+... +... ... .........+.+.. ..++++||||++++++
T Consensus 180 Tl~n~~~la~wl~~-~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~ 256 (737)
T PRK02362 180 TIGNADELADWLDA-ELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTL--EEGGQCLVFVSSRRNA 256 (737)
T ss_pred cCCCHHHHHHHhCC-CcccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHH--HcCCCeEEEEeCHHHH
Confidence 99 56778998853 233333344443321 1000 000 00022233333333 2568999999999999
Q ss_pred HHHHHHHHHHhhhc-------------------CCC-------CCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEc
Q 005291 227 EKLVSKLEDKIRSL-------------------DEG-------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVST 280 (704)
Q Consensus 227 ~~~~~~L~~~~~~~-------------------~~~-------~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaT 280 (704)
+.++..|....... ... .+....+.++||+|++++|..+++.|++|.++|||||
T Consensus 257 ~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT 336 (737)
T PRK02362 257 EGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISST 336 (737)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEec
Confidence 99999987653210 000 0012468999999999999999999999999999999
Q ss_pred ccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCC---CceEEEecCCcc-----cccc
Q 005291 281 NIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTV-----YHDE 352 (704)
Q Consensus 281 niae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~---~G~c~~L~~~~~-----~~~~ 352 (704)
+++++|||+|++++||+. ...||+..|. .|+|..+|.||+|||||.+ .|.|+.++...+ |...
T Consensus 337 ~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~ 407 (737)
T PRK02362 337 PTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERY 407 (737)
T ss_pred hhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHH
Confidence 999999999999999963 3467776543 4789999999999999983 499999986542 2221
Q ss_pred CCCCCCCccc----cCChHHHHHhhcccCcccc--cccc---ccCCCCC------CHHHHHHHHHHHHHcccccCCCC--
Q 005291 353 FLDVTVPEIQ----RSSLAGSVLYLKSLDLSDI--NVLK---FDFLDPP------SSESLEDALKQLYLIDAIDENGS-- 415 (704)
Q Consensus 353 ~~~~~~pei~----r~~l~~~~L~l~~l~~~~~--~~~~---~~~~~~P------~~~~l~~al~~L~~lgald~~~~-- 415 (704)
+...+.|--. ...|...++...+.|.-.. ++.. ..|+..+ -.+.++.+++.|.+.|+|+.++.
T Consensus 408 l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~ 487 (737)
T PRK02362 408 IWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDGETL 487 (737)
T ss_pred HhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeE
Confidence 2112222111 1135555666666553210 0212 2443332 23458899999999999987764
Q ss_pred -CCHHHHHHhcCCCChHhHHHHHHhhhcC---CHHHHHHHHHHhccC-CcccCCCCchHHHHhh--c-CCCCCCC-C-CC
Q 005291 416 -ITSIGRTMAELPLEPSLSRMLMEANEFG---CLSQALTVAAMLSAE-TTLLPGRSKSTEKKRK--H-TPLELPD-G-SG 485 (704)
Q Consensus 416 -lT~lG~~~~~lpl~p~~~~~ll~~~~~~---c~~~~l~i~a~ls~~-~~f~~~~~~~~~~~~~--~-~~~~~~~-~-~~ 485 (704)
+|++|+.++.++++|..+..+..+.... ....++.++|....- ++.++..+...-.... + ..+.... . -.
T Consensus 488 ~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~ 567 (737)
T PRK02362 488 EATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTPDMYELYLRSGDYEWLNEYLYEHEDELLGDVPSEFE 567 (737)
T ss_pred eEChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCccccccccChhHHHHHHHHHHhcccchhccCCchhh
Confidence 9999999999999999999998876542 234456555532222 2222222111100100 0 0110000 0 01
Q ss_pred CCCH------HHHHHHHHHhhhcCCchHHHHHccccccccccHHHHHHHHHHHHHH
Q 005291 486 WGDH------IQLLQIYECWDECDYDVNWVKDNGLQVRGMMFVKDIRKQLCQIMQK 535 (704)
Q Consensus 486 ~~D~------~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~ 535 (704)
..|+ +-..-+.++|.........+.++++....++.+.+-...|...+.+
T Consensus 568 ~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~~gdl~~~~~~~~~l~~a~~~ 623 (737)
T PRK02362 568 DDEFEDFLSAVKTALLLEDWIDEVDEERITERYGVGPGDIRGKVETAEWLLHAAER 623 (737)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence 1121 2223455788765555667888887666665555555555444443
No 16
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.4e-37 Score=362.08 Aligned_cols=434 Identities=17% Similarity=0.157 Sum_probs=281.0
Q ss_pred chHHHHHHHHH-hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHH--hCCccCceee
Q 005291 6 ILQYEETIVET-VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQE--LGVRLGEEVG 82 (704)
Q Consensus 6 i~~~~~~il~~-l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~--~~~~vg~~vg 82 (704)
.+++|.+.+.. +.+|+++++++|||||||......+.......+++++++.|+++++.|+++++... +|..++...|
T Consensus 24 l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~G 103 (720)
T PRK00254 24 LYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTG 103 (720)
T ss_pred CCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 56889999875 88999999999999999955533333322234678999999999999999988642 2333333333
Q ss_pred eeeecccccCcccceEEcchHHHHHHHHhC-CCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC-
Q 005291 83 YAIRFEDRTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL- 160 (704)
Q Consensus 83 ~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~-~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl- 160 (704)
. ...+.......+|+++||+.+...+... .+++++++||+||+|. ..+.+.. ..+..++.....+.++|++|||+
T Consensus 104 d-~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~-l~~~~rg-~~le~il~~l~~~~qiI~lSATl~ 180 (720)
T PRK00254 104 D-YDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHL-IGSYDRG-ATLEMILTHMLGRAQILGLSATVG 180 (720)
T ss_pred C-CCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCc-cCCccch-HHHHHHHHhcCcCCcEEEEEccCC
Confidence 1 1111122245789999999998776543 4789999999999994 3332221 22344444444478999999999
Q ss_pred ChHHHhcccCCCCccccCCCcCceeE--EecC-----CCC-cchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHH
Q 005291 161 DGEKVSKFFSNCPTLNVPGKLYPVEI--LHSK-----ERP-TSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (704)
Q Consensus 161 ~~~~~~~~~~~~~~i~i~~~~~pv~~--~~~~-----~~~-~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~ 232 (704)
+++.+.+|++. ..+....+..|+.. ++.. ... ..+.......+.+.. ..++++||||+++..++.++..
T Consensus 181 n~~~la~wl~~-~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~vLVF~~sr~~~~~~a~~ 257 (720)
T PRK00254 181 NAEELAEWLNA-ELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAV--KKGKGALVFVNTRRSAEKEALE 257 (720)
T ss_pred CHHHHHHHhCC-ccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHH--HhCCCEEEEEcChHHHHHHHHH
Confidence 67789999864 33333445444421 2111 110 011122222222222 2467999999999999998877
Q ss_pred HHHHhhhcC----------------CC-------CCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccC
Q 005291 233 LEDKIRSLD----------------EG-------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV 289 (704)
Q Consensus 233 L~~~~~~~~----------------~~-------~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidi 289 (704)
|...+.... .. .+....|.++||+|++++|..+++.|++|.++|||||+++++|||+
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvni 337 (720)
T PRK00254 258 LAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINL 337 (720)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCC
Confidence 754321100 00 0012468999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC---CCceEEEecCCcc----ccccCCCCCCCccc
Q 005291 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPSTV----YHDEFLDVTVPEIQ 362 (704)
Q Consensus 290 p~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~---~~G~c~~L~~~~~----~~~~~~~~~~pei~ 362 (704)
|++++||... ..|+ ..|+ .+.+..++.||+|||||. ..|.++.+.+.+. ++. +.. ..||-.
T Consensus 338 pa~~vVI~~~----~~~~-~~~~-----~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~-~~~-~~pe~l 405 (720)
T PRK00254 338 PAFRVIIRDT----KRYS-NFGW-----EDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMER-YIF-GKPEKL 405 (720)
T ss_pred CceEEEECCc----eEcC-CCCc-----eeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHH-HHh-CCchhh
Confidence 9999999633 2343 2222 244567899999999996 4699998886543 222 111 112211
Q ss_pred c------CChHHHHHhhcccC-ccc----ccccc--ccCCCCCC----HHHHHHHHHHHHHcccccCC--C--CCCHHHH
Q 005291 363 R------SSLAGSVLYLKSLD-LSD----INVLK--FDFLDPPS----SESLEDALKQLYLIDAIDEN--G--SITSIGR 421 (704)
Q Consensus 363 r------~~l~~~~L~l~~l~-~~~----~~~~~--~~~~~~P~----~~~l~~al~~L~~lgald~~--~--~lT~lG~ 421 (704)
. +.|...++.....+ +.+ ++... |-|...|+ .+.++.++..|.+.|.|+.+ + ..|++|+
T Consensus 406 ~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~ 485 (720)
T PRK00254 406 FSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLPLGI 485 (720)
T ss_pred hccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeChHHH
Confidence 1 12233344443333 221 00111 12222343 35677889999999998643 2 5799999
Q ss_pred HHhcCCCChHhHHHHHHhhhc----CCHHHHHHHHHHhcc
Q 005291 422 TMAELPLEPSLSRMLMEANEF----GCLSQALTVAAMLSA 457 (704)
Q Consensus 422 ~~~~lpl~p~~~~~ll~~~~~----~c~~~~l~i~a~ls~ 457 (704)
.++.++++|..++.+..+..- .....++.+.+....
T Consensus 486 ~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e 525 (720)
T PRK00254 486 RTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPD 525 (720)
T ss_pred HHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCcc
Confidence 999999999999999877642 345566666655433
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.7e-37 Score=344.07 Aligned_cols=310 Identities=18% Similarity=0.247 Sum_probs=229.9
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhcCCC-CCcEEEEcchhhHHHHHHHHHHHHHh----CCccCc
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHGYT-KSGIIGVTQPRRVAAVSVARRVAQEL----GVRLGE 79 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt-~l~~~l~~~~~~-~~~~ilv~~P~r~la~~~a~rva~~~----~~~vg~ 79 (704)
.+++|.++++.+.+|++++++||||||||+ ++.+++...... ....++++.|+++|+.|+++.+.... +..+..
T Consensus 27 ~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~ 106 (460)
T PRK11776 27 MTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLT 106 (460)
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 457899999999999999999999999994 444444433222 23478999999999999998775543 233322
Q ss_pred eeeeeeeccc---ccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEE
Q 005291 80 EVGYAIRFED---RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (704)
Q Consensus 80 ~vg~~~~~~~---~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~ 155 (704)
..| +..... .....++|+++|||.+.+.+.... .+.++++||+|||| +.++.++... +..++...+.+.++++
T Consensus 107 ~~G-g~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l~~g~~~~-l~~i~~~~~~~~q~ll 183 (460)
T PRK11776 107 LCG-GVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-RMLDMGFQDA-IDAIIRQAPARRQTLL 183 (460)
T ss_pred EEC-CCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH-HHhCcCcHHH-HHHHHHhCCcccEEEE
Confidence 233 111111 122467999999999999886543 68999999999999 5666665544 5566666666889999
Q ss_pred EecCCChHH--H-hcccCCCCccccCCC--cCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHH
Q 005291 156 TSATLDGEK--V-SKFFSNCPTLNVPGK--LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLV 230 (704)
Q Consensus 156 ~SATl~~~~--~-~~~~~~~~~i~i~~~--~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~ 230 (704)
+|||++... + ..++.++..+.+... ...++..|......+ ....+..+.....++++||||+++++++.++
T Consensus 184 ~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~----k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~ 259 (460)
T PRK11776 184 FSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDE----RLPALQRLLLHHQPESCVVFCNTKKECQEVA 259 (460)
T ss_pred EEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHH----HHHHHHHHHHhcCCCceEEEECCHHHHHHHH
Confidence 999997543 3 344444444444322 222444443332222 2333444444455678999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCC
Q 005291 231 SKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSS 310 (704)
Q Consensus 231 ~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~ 310 (704)
+.|.+. ++.+.++||+|++.+|..+++.|++|..+|||||+++++|||+|++++||++|+
T Consensus 260 ~~L~~~----------~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~---------- 319 (460)
T PRK11776 260 DALNAQ----------GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYEL---------- 319 (460)
T ss_pred HHHHhC----------CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecC----------
Confidence 999765 788999999999999999999999999999999999999999999999999665
Q ss_pred CccccccccccHHhHHhhccccCCC-CCceEEEecCCcccc
Q 005291 311 GMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (704)
Q Consensus 311 g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~ 350 (704)
|.+..+|+||+||+||. +.|.||.|++.++..
T Consensus 320 --------p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~ 352 (460)
T PRK11776 320 --------ARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQ 352 (460)
T ss_pred --------CCCHhHhhhhcccccCCCCcceEEEEEchhHHH
Confidence 45778899999999998 679999999886543
No 18
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-38 Score=316.16 Aligned_cols=310 Identities=20% Similarity=0.224 Sum_probs=234.8
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCCCC-CcEEEEcchhhHHHHHHHHHHHH---HhCCccCcee
Q 005291 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTK-SGIIGVTQPRRVAAVSVARRVAQ---ELGVRLGEEV 81 (704)
Q Consensus 7 ~~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~~~~~-~~~ilv~~P~r~la~~~a~rva~---~~~~~vg~~v 81 (704)
...|.+.++.+..|+++|..|+|||||| +++.+++......+ ....+|+.|+|+||.|+++.+.. -.|+.+...+
T Consensus 85 T~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lv 164 (476)
T KOG0330|consen 85 TKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLV 164 (476)
T ss_pred chhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEe
Confidence 3678889999999999999999999999 77777776654432 34899999999999999987633 2344444455
Q ss_pred eeeee--cccccCcccceEEcchHHHHHHHHhC--CCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEe
Q 005291 82 GYAIR--FEDRTSERTLIKYLTDGVLLREILSN--PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (704)
Q Consensus 82 g~~~~--~~~~~~~~~~I~~~T~g~Ll~~l~~~--~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~S 157 (704)
|..-. .......+.+|+++|||.|...+.+- ..+.+++++|+|||+ |.+|.||... +..+++..|.+.+.+++|
T Consensus 165 GG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-rlLd~dF~~~-ld~ILk~ip~erqt~Lfs 242 (476)
T KOG0330|consen 165 GGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-RLLDMDFEEE-LDYILKVIPRERQTFLFS 242 (476)
T ss_pred cCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-hhhhhhhHHH-HHHHHHhcCccceEEEEE
Confidence 52211 12233567899999999999999643 378899999999999 9999998766 667777777799999999
Q ss_pred cCCChHH--Hh-cccCCCCccccCCCcCc---eeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHH
Q 005291 158 ATLDGEK--VS-KFFSNCPTLNVPGKLYP---VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVS 231 (704)
Q Consensus 158 ATl~~~~--~~-~~~~~~~~i~i~~~~~p---v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~ 231 (704)
||++.+. +. .-+.++..+.++..... +...|...+. .|.+. .++.+.....++.+||||++....+.++-
T Consensus 243 ATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~-k~K~~---yLV~ll~e~~g~s~iVF~~t~~tt~~la~ 318 (476)
T KOG0330|consen 243 ATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG-KDKDT---YLVYLLNELAGNSVIVFCNTCNTTRFLAL 318 (476)
T ss_pred eecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc-cccch---hHHHHHHhhcCCcEEEEEeccchHHHHHH
Confidence 9997542 32 22333333444332211 1222322211 11111 12333334556899999999999999999
Q ss_pred HHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCC
Q 005291 232 KLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (704)
Q Consensus 232 ~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g 311 (704)
.|+.. ++...++||.|+...|.-.|+.|++|.+.|+||||++++|+|||.|++|||+++
T Consensus 319 ~L~~l----------g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDi----------- 377 (476)
T KOG0330|consen 319 LLRNL----------GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDI----------- 377 (476)
T ss_pred HHHhc----------CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCC-----------
Confidence 98875 899999999999999999999999999999999999999999999999999654
Q ss_pred ccccccccccHHhHHhhccccCCC-CCceEEEecCCcccc
Q 005291 312 MYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (704)
Q Consensus 312 ~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~ 350 (704)
|.+-.+|+||+||+||. ++|+.+.|.++.+.+
T Consensus 378 -------P~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 378 -------PTHSKDYIHRVGRTARAGRSGKAITLVTQYDVE 410 (476)
T ss_pred -------CCcHHHHHHHcccccccCCCcceEEEEehhhhH
Confidence 55667899999999999 789999999984443
No 19
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-36 Score=326.36 Aligned_cols=311 Identities=22% Similarity=0.235 Sum_probs=231.2
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcC------CCCCcEEEEcchhhHHHHHHHHHHHHHhCCccC-
Q 005291 8 QYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHG------YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLG- 78 (704)
Q Consensus 8 ~~~~~il~~l~~~~~vii~gpTGsGKT--t~l~~~l~~~~------~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg- 78 (704)
+.|.+-+..+.+|++++.++.|||||| .++|.+..... ...+.+++|+.|||+||.|+.+.+.+... ...
T Consensus 116 pIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~-~~~~ 194 (519)
T KOG0331|consen 116 PIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGK-SLRL 194 (519)
T ss_pred hhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcC-CCCc
Confidence 456667788889999999999999999 55665555443 12345899999999999999887654433 222
Q ss_pred ---ceeeeeeecc---cccCcccceEEcchHHHHHHHHhC-CCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh-ccC
Q 005291 79 ---EEVGYAIRFE---DRTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASK 150 (704)
Q Consensus 79 ---~~vg~~~~~~---~~~~~~~~I~~~T~g~Ll~~l~~~-~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~-~~~ 150 (704)
...| +.+.. .......+|+++|||+|..++... -.|++++++|+|||+ |+++.+|-.. ++.++... +++
T Consensus 195 ~~~cvyG-G~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD-rMldmGFe~q-I~~Il~~i~~~~ 271 (519)
T KOG0331|consen 195 RSTCVYG-GAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD-RMLDMGFEPQ-IRKILSQIPRPD 271 (519)
T ss_pred cEEEEeC-CCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-hhhccccHHH-HHHHHHhcCCCc
Confidence 1122 12211 222346789999999999999544 489999999999999 9999997777 55555555 435
Q ss_pred cEEEEEecCCChHH--H-hcccCCCCccccCCCc-----CceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCC
Q 005291 151 LKILITSATLDGEK--V-SKFFSNCPTLNVPGKL-----YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTG 222 (704)
Q Consensus 151 ~kiI~~SATl~~~~--~-~~~~~~~~~i~i~~~~-----~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~ 222 (704)
.+.++.|||.+.+. + ..|+.+...+.+.+.. ..+...-.. ....-....+..++.......++++||||.+
T Consensus 272 rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~-~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~t 350 (519)
T KOG0331|consen 272 RQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEV-CDETAKLRKLGKLLEDISSDSEGKVIIFCET 350 (519)
T ss_pred ccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhh-cCHHHHHHHHHHHHHHHhccCCCcEEEEecc
Confidence 58999999998765 3 4566544444433321 111110000 1111122334444554546778999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccc
Q 005291 223 QDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVK 302 (704)
Q Consensus 223 ~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k 302 (704)
+..+.++...|+.. ++.+..+||+.++.+|..+++.|++|+..||||||+|++|+|||+|++||++.+
T Consensus 351 kr~~~~l~~~l~~~----------~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydf-- 418 (519)
T KOG0331|consen 351 KRTCDELARNLRRK----------GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDF-- 418 (519)
T ss_pred hhhHHHHHHHHHhc----------CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCC--
Confidence 99999999999864 578999999999999999999999999999999999999999999999999554
Q ss_pred cccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccccc
Q 005291 303 QRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (704)
Q Consensus 303 ~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~~ 351 (704)
|-+...|+||+||+||. +.|..|.+|+...+..
T Consensus 419 ----------------P~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 419 ----------------PNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKL 452 (519)
T ss_pred ----------------CCCHHHHHhhcCccccCCCCceEEEEEeHHHHHH
Confidence 55778899999999996 7899999999887754
No 20
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.3e-36 Score=339.45 Aligned_cols=313 Identities=21% Similarity=0.247 Sum_probs=220.6
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH-HH-HHHHHHhcC-----CCCCcEEEEcchhhHHHHHHHHHHHHHhC---C
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQ-LSQILHRHG-----YTKSGIIGVTQPRRVAAVSVARRVAQELG---V 75 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKT-t~-l~~~l~~~~-----~~~~~~ilv~~P~r~la~~~a~rva~~~~---~ 75 (704)
.+++|.+.++.+.+|+++++++||||||| ++ +|.+..... ...+..++++.|+|+||.|+.+.+.+... .
T Consensus 153 pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i 232 (545)
T PTZ00110 153 PTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKI 232 (545)
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCc
Confidence 45789999999999999999999999999 33 444333211 12345899999999999999887755332 1
Q ss_pred ccCceeeeeeecc--cccCcccceEEcchHHHHHHHHhC-CCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcE
Q 005291 76 RLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (704)
Q Consensus 76 ~vg~~vg~~~~~~--~~~~~~~~I~~~T~g~Ll~~l~~~-~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~k 152 (704)
.+....|...... .......+|+|+|||.|.+.+... ..+.++++||||||| +.++.++... ++.++...+++.+
T Consensus 233 ~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd-~mld~gf~~~-i~~il~~~~~~~q 310 (545)
T PTZ00110 233 RNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD-RMLDMGFEPQ-IRKIVSQIRPDRQ 310 (545)
T ss_pred cEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH-hhhhcchHHH-HHHHHHhCCCCCe
Confidence 1111112110000 011235789999999999988654 368999999999999 7777776655 4555554445899
Q ss_pred EEEEecCCChHH--Hh-cccCCCCc-cccCCC----cCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHH
Q 005291 153 ILITSATLDGEK--VS-KFFSNCPT-LNVPGK----LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (704)
Q Consensus 153 iI~~SATl~~~~--~~-~~~~~~~~-i~i~~~----~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ 224 (704)
++++|||++.+. +. .++...++ +.+... ...+...+......+ ....+..++.... ...+++||||++++
T Consensus 311 ~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~-k~~~L~~ll~~~~-~~~~k~LIF~~t~~ 388 (545)
T PTZ00110 311 TLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHE-KRGKLKMLLQRIM-RDGDKILIFVETKK 388 (545)
T ss_pred EEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechh-HHHHHHHHHHHhc-ccCCeEEEEecChH
Confidence 999999997643 33 34433222 222110 011111111111111 1122222222222 15679999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccc
Q 005291 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQR 304 (704)
Q Consensus 225 ~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~ 304 (704)
+++.+++.|... ++.+..+||+++.++|..+++.|++|+.+|||||+++++|||||+|++||++++
T Consensus 389 ~a~~l~~~L~~~----------g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~---- 454 (545)
T PTZ00110 389 GADFLTKELRLD----------GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDF---- 454 (545)
T ss_pred HHHHHHHHHHHc----------CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCC----
Confidence 999999998754 677889999999999999999999999999999999999999999999999664
Q ss_pred cccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCcccc
Q 005291 305 QYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (704)
Q Consensus 305 ~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~ 350 (704)
|.+..+|+||+||+||. ..|.||.+++.++..
T Consensus 455 --------------P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~ 487 (545)
T PTZ00110 455 --------------PNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYR 487 (545)
T ss_pred --------------CCCHHHHHHHhcccccCCCCceEEEEECcchHH
Confidence 55778999999999999 689999999987653
No 21
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.1e-36 Score=331.35 Aligned_cols=308 Identities=18% Similarity=0.185 Sum_probs=220.2
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcC---C-----CCCcEEEEcchhhHHHHHHHHHHHHH---hC
Q 005291 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG---Y-----TKSGIIGVTQPRRVAAVSVARRVAQE---LG 74 (704)
Q Consensus 7 ~~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~~---~-----~~~~~ilv~~P~r~la~~~a~rva~~---~~ 74 (704)
.++|.+.++.+.+|++++++|||||||| +++.+++.... . ..+.+++++.|+|+||.|+++.+... .+
T Consensus 32 t~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~ 111 (423)
T PRK04837 32 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATG 111 (423)
T ss_pred CHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhccCC
Confidence 5789999999999999999999999999 34333332211 1 12358999999999999998765433 33
Q ss_pred CccCceeeeeeeccc---ccCcccceEEcchHHHHHHHHhC-CCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc--
Q 005291 75 VRLGEEVGYAIRFED---RTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-- 148 (704)
Q Consensus 75 ~~vg~~vg~~~~~~~---~~~~~~~I~~~T~g~Ll~~l~~~-~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-- 148 (704)
..++...|. ...+. ......+|+|+|||.+.+.+... ..+.++++||||||| +.++.++... ++.+....+
T Consensus 112 ~~v~~~~gg-~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad-~l~~~~f~~~-i~~i~~~~~~~ 188 (423)
T PRK04837 112 LKLGLAYGG-DGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD-RMFDLGFIKD-IRWLFRRMPPA 188 (423)
T ss_pred ceEEEEECC-CCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH-HHhhcccHHH-HHHHHHhCCCc
Confidence 333333331 11111 12235789999999999888543 378999999999999 5666655444 455555444
Q ss_pred cCcEEEEEecCCChHH---HhcccCCCCccccCCCc---CceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCC
Q 005291 149 SKLKILITSATLDGEK---VSKFFSNCPTLNVPGKL---YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTG 222 (704)
Q Consensus 149 ~~~kiI~~SATl~~~~---~~~~~~~~~~i~i~~~~---~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~ 222 (704)
...+.+++|||++... ...++.++..+.+.... ..+...+.... .......+..+......+++||||++
T Consensus 189 ~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~----~~~k~~~l~~ll~~~~~~~~lVF~~t 264 (423)
T PRK04837 189 NQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPS----NEEKMRLLQTLIEEEWPDRAIIFANT 264 (423)
T ss_pred cceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCC----HHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 2456789999997643 23455554444433211 11111111111 11223334444444556799999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccc
Q 005291 223 QDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVK 302 (704)
Q Consensus 223 ~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k 302 (704)
+..++.+++.|... ++.+..+||+|+.++|.++++.|++|+.+|||||+++++|||+|+|++||++++
T Consensus 265 ~~~~~~l~~~L~~~----------g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~-- 332 (423)
T PRK04837 265 KHRCEEIWGHLAAD----------GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDL-- 332 (423)
T ss_pred HHHHHHHHHHHHhC----------CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCC--
Confidence 99999999999764 788999999999999999999999999999999999999999999999999554
Q ss_pred cccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccc
Q 005291 303 QRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (704)
Q Consensus 303 ~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~ 349 (704)
|.|..+|.||+||+||. +.|.|+.++++++.
T Consensus 333 ----------------P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 333 ----------------PDDCEDYVHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred ----------------CCchhheEeccccccCCCCCeeEEEEeCHHHH
Confidence 55778889999999999 68999999987754
No 22
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=7.3e-36 Score=332.46 Aligned_cols=309 Identities=18% Similarity=0.212 Sum_probs=223.2
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCCC-------CCcEEEEcchhhHHHHHHHHHHHHHhC---
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYT-------KSGIIGVTQPRRVAAVSVARRVAQELG--- 74 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~~~~-------~~~~ilv~~P~r~la~~~a~rva~~~~--- 74 (704)
.+++|.++++.+.+++++++++||||||| +++.+++...... ...++++++|+++|+.|+.+.+.....
T Consensus 24 pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~ 103 (456)
T PRK10590 24 PTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLN 103 (456)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCC
Confidence 46789999999999999999999999999 4444444332111 123799999999999999998765433
Q ss_pred CccCceeeeeeeccc---ccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccC
Q 005291 75 VRLGEEVGYAIRFED---RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (704)
Q Consensus 75 ~~vg~~vg~~~~~~~---~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~ 150 (704)
......+| ....+. ......+|+|+||+.|+..+.... .++++++||||||| +.++..+... ++.++...+..
T Consensus 104 ~~~~~~~g-g~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah-~ll~~~~~~~-i~~il~~l~~~ 180 (456)
T PRK10590 104 IRSLVVFG-GVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD-RMLDMGFIHD-IRRVLAKLPAK 180 (456)
T ss_pred CEEEEEEC-CcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-HHhccccHHH-HHHHHHhCCcc
Confidence 22222222 111111 123457899999999998876544 68999999999999 5666655444 45555656657
Q ss_pred cEEEEEecCCChHH---HhcccCCCCccccCCCcC---ceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHH
Q 005291 151 LKILITSATLDGEK---VSKFFSNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (704)
Q Consensus 151 ~kiI~~SATl~~~~---~~~~~~~~~~i~i~~~~~---pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ 224 (704)
.+++++|||++.+. ...++.++..+.+..+.. .+..++.... .. .....+..+.......++||||+++.
T Consensus 181 ~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~-~~---~k~~~l~~l~~~~~~~~~lVF~~t~~ 256 (456)
T PRK10590 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVD-KK---RKRELLSQMIGKGNWQQVLVFTRTKH 256 (456)
T ss_pred CeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcC-HH---HHHHHHHHHHHcCCCCcEEEEcCcHH
Confidence 89999999997642 345555544444332211 1222221111 11 11222233333345578999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccc
Q 005291 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQR 304 (704)
Q Consensus 225 ~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~ 304 (704)
+++.+++.|.+. ++.+..+||+|+.++|.++++.|++|+.+|||||+++++|||||+|++||++++
T Consensus 257 ~~~~l~~~L~~~----------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~---- 322 (456)
T PRK10590 257 GANHLAEQLNKD----------GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYEL---- 322 (456)
T ss_pred HHHHHHHHHHHC----------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCC----
Confidence 999999999764 678899999999999999999999999999999999999999999999999554
Q ss_pred cccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccc
Q 005291 305 QYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (704)
Q Consensus 305 ~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~ 349 (704)
|.+..+|+||+|||||. ..|.|+.+++.++.
T Consensus 323 --------------P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~ 354 (456)
T PRK10590 323 --------------PNVPEDYVHRIGRTGRAAATGEALSLVCVDEH 354 (456)
T ss_pred --------------CCCHHHhhhhccccccCCCCeeEEEEecHHHH
Confidence 55778899999999998 67999999976654
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6.6e-36 Score=331.84 Aligned_cols=311 Identities=19% Similarity=0.211 Sum_probs=224.1
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhc---CC--CCCcEEEEcchhhHHHHHHHHHHHHH---hCCc
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRH---GY--TKSGIIGVTQPRRVAAVSVARRVAQE---LGVR 76 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt-~l~~~l~~~---~~--~~~~~ilv~~P~r~la~~~a~rva~~---~~~~ 76 (704)
.+.+|.+.+..+.+|+++++++|||||||. ++.+++... .. ....+++++.|+++|+.|+++.+... .+..
T Consensus 24 p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~ 103 (434)
T PRK11192 24 PTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLD 103 (434)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcE
Confidence 467999999999999999999999999993 333333321 11 12358999999999999998876443 3444
Q ss_pred cCceeeeeeecc---cccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcE
Q 005291 77 LGEEVGYAIRFE---DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (704)
Q Consensus 77 vg~~vg~~~~~~---~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~k 152 (704)
++...|. .... .....+.+|+|+|||+|++.+.... .+.++++||||||| +.++..+... +..+....+...+
T Consensus 104 v~~~~gg-~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~~l~~~~~~~-~~~i~~~~~~~~q 180 (434)
T PRK11192 104 IATITGG-VAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-RMLDMGFAQD-IETIAAETRWRKQ 180 (434)
T ss_pred EEEEECC-CCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-HHhCCCcHHH-HHHHHHhCccccE
Confidence 4444431 1111 1123457899999999999886655 58899999999999 5666554433 4455444444789
Q ss_pred EEEEecCCChHH---Hhccc-CCCCccccCCCc---CceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHH
Q 005291 153 ILITSATLDGEK---VSKFF-SNCPTLNVPGKL---YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (704)
Q Consensus 153 iI~~SATl~~~~---~~~~~-~~~~~i~i~~~~---~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~ 225 (704)
++++|||++... +...+ .+...+.+.... ..+...+.... ........+..+......+++||||+++++
T Consensus 181 ~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~---~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~ 257 (434)
T PRK11192 181 TLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRAD---DLEHKTALLCHLLKQPEVTRSIVFVRTRER 257 (434)
T ss_pred EEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeC---CHHHHHHHHHHHHhcCCCCeEEEEeCChHH
Confidence 999999997543 33333 222222222111 11222222111 122333444444444466899999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCcccccc
Q 005291 226 IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQ 305 (704)
Q Consensus 226 i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~ 305 (704)
++.++..|.+. ++.+..+||+|+..+|..+++.|++|..+|||||+++++|||+|+|++||++++
T Consensus 258 ~~~l~~~L~~~----------~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~----- 322 (434)
T PRK11192 258 VHELAGWLRKA----------GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDM----- 322 (434)
T ss_pred HHHHHHHHHhC----------CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECC-----
Confidence 99999999764 678999999999999999999999999999999999999999999999999554
Q ss_pred ccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCcccc
Q 005291 306 YNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (704)
Q Consensus 306 ~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~ 350 (704)
|.|...|+||+||+||. ..|.++.+++..++.
T Consensus 323 -------------p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~ 355 (434)
T PRK11192 323 -------------PRSADTYLHRIGRTGRAGRKGTAISLVEAHDHL 355 (434)
T ss_pred -------------CCCHHHHhhcccccccCCCCceEEEEecHHHHH
Confidence 55778999999999998 679999999776654
No 24
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.9e-35 Score=335.33 Aligned_cols=309 Identities=17% Similarity=0.223 Sum_probs=221.8
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcC--------CCCCcEEEEcchhhHHHHHHHHHHHHHh---
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG--------YTKSGIIGVTQPRRVAAVSVARRVAQEL--- 73 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~~--------~~~~~~ilv~~P~r~la~~~a~rva~~~--- 73 (704)
.+++|.+.+..+.+|+++++++||||||| +++.+++.... ...+.+++|+.|+++|+.|+++.+....
T Consensus 32 ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~ 111 (572)
T PRK04537 32 CTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL 111 (572)
T ss_pred CCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccC
Confidence 35789999999999999999999999999 44444443221 1113589999999999999998864432
Q ss_pred CCccCceeeeeeeccc---ccCcccceEEcchHHHHHHHHhC--CCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc
Q 005291 74 GVRLGEEVGYAIRFED---RTSERTLIKYLTDGVLLREILSN--PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (704)
Q Consensus 74 ~~~vg~~vg~~~~~~~---~~~~~~~I~~~T~g~Ll~~l~~~--~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~ 148 (704)
+..++..+|. ...+. ......+|+|+||+.|++.+... ..+.++++||||||| +.++..+... +..++...+
T Consensus 112 ~i~v~~l~Gg-~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh-~lld~gf~~~-i~~il~~lp 188 (572)
T PRK04537 112 GLRFALVYGG-VDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD-RMFDLGFIKD-IRFLLRRMP 188 (572)
T ss_pred CceEEEEECC-CCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH-HHhhcchHHH-HHHHHHhcc
Confidence 2222222331 11111 12235689999999999988654 357889999999999 4555555443 444555444
Q ss_pred c--CcEEEEEecCCChHH---HhcccCCCCccccCCCcCc---eeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEe
Q 005291 149 S--KLKILITSATLDGEK---VSKFFSNCPTLNVPGKLYP---VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFM 220 (704)
Q Consensus 149 ~--~~kiI~~SATl~~~~---~~~~~~~~~~i~i~~~~~p---v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl 220 (704)
. +.+++++|||++... ...++.+...+.+...... +...+.... .......++.+.......++||||
T Consensus 189 ~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~----~~~k~~~L~~ll~~~~~~k~LVF~ 264 (572)
T PRK04537 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPA----DEEKQTLLLGLLSRSEGARTMVFV 264 (572)
T ss_pred cccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecC----HHHHHHHHHHHHhcccCCcEEEEe
Confidence 2 678999999997643 3345544333333222111 111111111 122333444444455677999999
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCc
Q 005291 221 TGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (704)
Q Consensus 221 ~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~ 300 (704)
+++..++.+++.|.+. ++.+..+||+|+..+|.++++.|++|+.+|||||+++++|||+|+|++||++++
T Consensus 265 nt~~~ae~l~~~L~~~----------g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~ 334 (572)
T PRK04537 265 NTKAFVERVARTLERH----------GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDL 334 (572)
T ss_pred CCHHHHHHHHHHHHHc----------CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCC
Confidence 9999999999999764 678999999999999999999999999999999999999999999999999553
Q ss_pred cccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccc
Q 005291 301 VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (704)
Q Consensus 301 ~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~ 349 (704)
|.+..+|+||+||+||. ..|.|+.|++..+.
T Consensus 335 ------------------P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~ 366 (572)
T PRK04537 335 ------------------PFDAEDYVHRIGRTARLGEEGDAISFACERYA 366 (572)
T ss_pred ------------------CCCHHHHhhhhcccccCCCCceEEEEecHHHH
Confidence 56888999999999998 68999999876543
No 25
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=7.8e-36 Score=328.45 Aligned_cols=313 Identities=17% Similarity=0.209 Sum_probs=222.8
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHH-HHHHHhcCC-CCCcEEEEcchhhHHHHHHHHHHHHHh---CCccCce
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQL-SQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQEL---GVRLGEE 80 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt~l-~~~l~~~~~-~~~~~ilv~~P~r~la~~~a~rva~~~---~~~vg~~ 80 (704)
.+++|.+.+..+.++++++++||||||||... .+++..... ..+.+++++.|+++|+.|+.+.+.... +......
T Consensus 51 ~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~ 130 (401)
T PTZ00424 51 PSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHAC 130 (401)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEE
Confidence 46789999999999999999999999999433 333333222 235689999999999999887664432 2222222
Q ss_pred eeeeeecc--cccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEe
Q 005291 81 VGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (704)
Q Consensus 81 vg~~~~~~--~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~S 157 (704)
+|.....+ .......+|+++|++.+.+.+.... .+.++++||+||+|+ ..+.++.. .+..++...+++.+++++|
T Consensus 131 ~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~-~~~~~~~~-~~~~i~~~~~~~~~~i~~S 208 (401)
T PTZ00424 131 VGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE-MLSRGFKG-QIYDVFKKLPPDVQVALFS 208 (401)
T ss_pred ECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH-HHhcchHH-HHHHHHhhCCCCcEEEEEE
Confidence 33211111 1112346899999999998886554 689999999999994 43333332 3444555555589999999
Q ss_pred cCCChHH---HhcccCCCCccccCCCc---CceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHH
Q 005291 158 ATLDGEK---VSKFFSNCPTLNVPGKL---YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVS 231 (704)
Q Consensus 158 ATl~~~~---~~~~~~~~~~i~i~~~~---~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~ 231 (704)
||++.+. ...++.++..+.+.... ..+..++......++. ...+..+.......++||||+++++++.+++
T Consensus 209 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~ 285 (401)
T PTZ00424 209 ATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWK---FDTLCDLYETLTITQAIIYCNTRRKVDYLTK 285 (401)
T ss_pred ecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHH---HHHHHHHHHhcCCCeEEEEecCcHHHHHHHH
Confidence 9997653 23444433333222211 1122333322222222 2233334444456789999999999999999
Q ss_pred HHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCC
Q 005291 232 KLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (704)
Q Consensus 232 ~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g 311 (704)
.|.+. ++.+..+||+|+.++|..+++.|++|+.+|||||+++++|||+|++++||+.++
T Consensus 286 ~l~~~----------~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~----------- 344 (401)
T PTZ00424 286 KMHER----------DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDL----------- 344 (401)
T ss_pred HHHHC----------CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECC-----------
Confidence 88764 678999999999999999999999999999999999999999999999998553
Q ss_pred ccccccccccHHhHHhhccccCCC-CCceEEEecCCccccc
Q 005291 312 MYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (704)
Q Consensus 312 ~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~~ 351 (704)
|.|..+|.||+|||||. ..|.||.++++++...
T Consensus 345 -------p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~ 378 (401)
T PTZ00424 345 -------PASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQ 378 (401)
T ss_pred -------CCCHHHEeecccccccCCCCceEEEEEcHHHHHH
Confidence 56888999999999998 6899999998876543
No 26
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.9e-35 Score=335.61 Aligned_cols=309 Identities=19% Similarity=0.222 Sum_probs=227.6
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhcCC-CCCcEEEEcchhhHHHHHHHHHHHHHhCC----ccCc
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGV----RLGE 79 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt-~l~~~l~~~~~-~~~~~ilv~~P~r~la~~~a~rva~~~~~----~vg~ 79 (704)
.+++|.+++..+.++++++++||||||||. ++.+++..... ..+.+++|++|+++|+.|+++.+....+. .+..
T Consensus 29 ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~ 108 (629)
T PRK11634 29 PSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVA 108 (629)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEE
Confidence 567899999999999999999999999994 33334333222 23458999999999999999987665432 2222
Q ss_pred eeeeeeeccc---ccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEE
Q 005291 80 EVGYAIRFED---RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (704)
Q Consensus 80 ~vg~~~~~~~---~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~ 155 (704)
..|. ...+. .....++|+|+||+.++..+.... .++++++|||||||+ .++..+... +..++...+...++++
T Consensus 109 ~~gG-~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~-ml~~gf~~d-i~~Il~~lp~~~q~ll 185 (629)
T PRK11634 109 LYGG-QRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE-MLRMGFIED-VETIMAQIPEGHQTAL 185 (629)
T ss_pred EECC-cCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH-HhhcccHHH-HHHHHHhCCCCCeEEE
Confidence 2221 11111 122457899999999999886654 689999999999995 555555444 4555556666889999
Q ss_pred EecCCChHH---HhcccCCCCccccCCCcC---ceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHH
Q 005291 156 TSATLDGEK---VSKFFSNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (704)
Q Consensus 156 ~SATl~~~~---~~~~~~~~~~i~i~~~~~---pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~ 229 (704)
+|||++... ...|+.++..+.+..... .+...|...... .....+..+........+||||+++.+++.+
T Consensus 186 fSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~----~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l 261 (629)
T PRK11634 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM----RKNEALVRFLEAEDFDAAIIFVRTKNATLEV 261 (629)
T ss_pred EEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechh----hHHHHHHHHHHhcCCCCEEEEeccHHHHHHH
Confidence 999997643 455666655555443221 222222221111 1223334444445567899999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCC
Q 005291 230 VSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPS 309 (704)
Q Consensus 230 ~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~ 309 (704)
++.|.+. ++.+..+||+|+..+|.++++.|++|+.+|||||+++++|||+|+|++||++++
T Consensus 262 ~~~L~~~----------g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~--------- 322 (629)
T PRK11634 262 AEALERN----------GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDI--------- 322 (629)
T ss_pred HHHHHhC----------CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCC---------
Confidence 9999764 788999999999999999999999999999999999999999999999998543
Q ss_pred CCccccccccccHHhHHhhccccCCC-CCceEEEecCCccc
Q 005291 310 SGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (704)
Q Consensus 310 ~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~ 349 (704)
|.+..+|+||+||+||. +.|.++.+++..+.
T Consensus 323 ---------P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 323 ---------PMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred ---------CCCHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 55778899999999999 56999999876543
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-35 Score=333.22 Aligned_cols=309 Identities=19% Similarity=0.255 Sum_probs=221.0
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCCC--------CCcEEEEcchhhHHHHHHHHHHHHHh---
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYT--------KSGIIGVTQPRRVAAVSVARRVAQEL--- 73 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~~~~--------~~~~ilv~~P~r~la~~~a~rva~~~--- 73 (704)
.+++|.+.+..+.+|+++++++||||||| +++.+++...... ...+++++.|+++|+.|+++.+....
T Consensus 110 ~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~ 189 (475)
T PRK01297 110 CTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYT 189 (475)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhccC
Confidence 47899999999999999999999999999 4444444332111 13589999999999999998875543
Q ss_pred CCccCceeeeeeecc----cccCcccceEEcchHHHHHHHHh-CCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc
Q 005291 74 GVRLGEEVGYAIRFE----DRTSERTLIKYLTDGVLLREILS-NPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (704)
Q Consensus 74 ~~~vg~~vg~~~~~~----~~~~~~~~I~~~T~g~Ll~~l~~-~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~ 148 (704)
+..+...+|. ...+ .......+|+++||++|+..... ...++++++|||||+| +.++..+... ++.++...+
T Consensus 190 ~~~v~~~~gg-~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah-~l~~~~~~~~-l~~i~~~~~ 266 (475)
T PRK01297 190 GLNVMTFVGG-MDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEAD-RMLDMGFIPQ-VRQIIRQTP 266 (475)
T ss_pred CCEEEEEEcc-CChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHH-HHHhcccHHH-HHHHHHhCC
Confidence 3333223331 1111 11224578999999999887754 3478999999999999 4444444333 455555443
Q ss_pred --cCcEEEEEecCCChHH---HhcccCCCCccccCCCcC---ceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEe
Q 005291 149 --SKLKILITSATLDGEK---VSKFFSNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFM 220 (704)
Q Consensus 149 --~~~kiI~~SATl~~~~---~~~~~~~~~~i~i~~~~~---pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl 220 (704)
.+.+++++|||++.+. ...|..+...+.+..... .+..++......+ ....+..+......+++||||
T Consensus 267 ~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~----k~~~l~~ll~~~~~~~~IVF~ 342 (475)
T PRK01297 267 RKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSD----KYKLLYNLVTQNPWERVMVFA 342 (475)
T ss_pred CCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchh----HHHHHHHHHHhcCCCeEEEEe
Confidence 2568999999996543 334544444433332211 1122221111111 122333333444567999999
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCc
Q 005291 221 TGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (704)
Q Consensus 221 ~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~ 300 (704)
+++++++.+++.|.+. ++.+..+||+++.++|.++++.|++|+++|||||+++++|||||++++||++|+
T Consensus 343 ~s~~~~~~l~~~L~~~----------~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~ 412 (475)
T PRK01297 343 NRKDEVRRIEERLVKD----------GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTL 412 (475)
T ss_pred CCHHHHHHHHHHHHHc----------CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCC
Confidence 9999999999988654 677889999999999999999999999999999999999999999999999665
Q ss_pred cccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccc
Q 005291 301 VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (704)
Q Consensus 301 ~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~ 349 (704)
|.|..+|+||+|||||. ..|.++.++++++.
T Consensus 413 ------------------P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~ 444 (475)
T PRK01297 413 ------------------PEDPDDYVHRIGRTGRAGASGVSISFAGEDDA 444 (475)
T ss_pred ------------------CCCHHHHHHhhCccCCCCCCceEEEEecHHHH
Confidence 66889999999999999 67999999987643
No 28
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.8e-35 Score=333.29 Aligned_cols=311 Identities=18% Similarity=0.164 Sum_probs=218.6
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhc-C-------CCCCcEEEEcchhhHHHHHHHHHHHHHhC--
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH-G-------YTKSGIIGVTQPRRVAAVSVARRVAQELG-- 74 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~-~-------~~~~~~ilv~~P~r~la~~~a~rva~~~~-- 74 (704)
.+++|.+.++.+.+|+++++++||||||| +++.+++... . ...+.+++++.|+|+|+.|+.+.+.....
T Consensus 144 ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~ 223 (518)
T PLN00206 144 PTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGL 223 (518)
T ss_pred CCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC
Confidence 35789999999999999999999999999 3333333221 1 12355899999999999998776644322
Q ss_pred -CccCceeeeeeecc--cccCcccceEEcchHHHHHHHHhC-CCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccC
Q 005291 75 -VRLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (704)
Q Consensus 75 -~~vg~~vg~~~~~~--~~~~~~~~I~~~T~g~Ll~~l~~~-~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~ 150 (704)
......+|.....+ .......+|+++|||.|...+... ..+.++++||||||| +.++.++... +..++...+ +
T Consensus 224 ~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad-~ml~~gf~~~-i~~i~~~l~-~ 300 (518)
T PLN00206 224 PFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVD-CMLERGFRDQ-VMQIFQALS-Q 300 (518)
T ss_pred CceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHH-HHhhcchHHH-HHHHHHhCC-C
Confidence 11111222111100 112245789999999999888554 478999999999999 5666555444 445555555 7
Q ss_pred cEEEEEecCCChH--HHhcccC-CCCccccCCCcCc---eeEEecCCCCcchHHHHHHHHHHHHc--cCCCCCEEEEeCC
Q 005291 151 LKILITSATLDGE--KVSKFFS-NCPTLNVPGKLYP---VEILHSKERPTSYLESALKTAIDIHV--REPEGDVLIFMTG 222 (704)
Q Consensus 151 ~kiI~~SATl~~~--~~~~~~~-~~~~i~i~~~~~p---v~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~g~iLVFl~~ 222 (704)
.+++++|||++.+ .+...+. +...+.+.....+ +...+......+. ...+..+.. ....+++|||+++
T Consensus 301 ~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k----~~~l~~~l~~~~~~~~~~iVFv~s 376 (518)
T PLN00206 301 PQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQK----KQKLFDILKSKQHFKPPAVVFVSS 376 (518)
T ss_pred CcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhH----HHHHHHHHHhhcccCCCEEEEcCC
Confidence 8999999999764 3444443 3333333222111 1111111111111 112222222 1234689999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccc
Q 005291 223 QDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVK 302 (704)
Q Consensus 223 ~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k 302 (704)
+..++.+++.|... .++.+..+||+++.++|..+++.|++|+.+|||||+++++|||+|+|++||++++
T Consensus 377 ~~~a~~l~~~L~~~---------~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~-- 445 (518)
T PLN00206 377 RLGADLLANAITVV---------TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDM-- 445 (518)
T ss_pred chhHHHHHHHHhhc---------cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCC--
Confidence 99999999988754 3678899999999999999999999999999999999999999999999999554
Q ss_pred cccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCcccc
Q 005291 303 QRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (704)
Q Consensus 303 ~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~ 350 (704)
|.|..+|+||+|||||. ..|.++.+++.++..
T Consensus 446 ----------------P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~ 478 (518)
T PLN00206 446 ----------------PNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRN 478 (518)
T ss_pred ----------------CCCHHHHHHhccccccCCCCeEEEEEEchhHHH
Confidence 56888999999999999 579999999876643
No 29
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-35 Score=328.00 Aligned_cols=308 Identities=22% Similarity=0.322 Sum_probs=236.8
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcC--CCCCcE-EEEcchhhHHHHHHHHHHHHH---h-CCcc
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG--YTKSGI-IGVTQPRRVAAVSVARRVAQE---L-GVRL 77 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~~--~~~~~~-ilv~~P~r~la~~~a~rva~~---~-~~~v 77 (704)
..+.|...++.+..|+++++.++|||||| +++.+++.... ...... .+++.|||+||.|+++.+... . +..+
T Consensus 52 pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~ 131 (513)
T COG0513 52 PTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRV 131 (513)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccE
Confidence 35788899999999999999999999999 66666666543 222222 899999999999998876443 3 2333
Q ss_pred Cceeeeeeecccc---cCcccceEEcchHHHHHHHHhC-CCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEE
Q 005291 78 GEEVGYAIRFEDR---TSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (704)
Q Consensus 78 g~~vg~~~~~~~~---~~~~~~I~~~T~g~Ll~~l~~~-~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~ki 153 (704)
...+|. ...... .....+|+|+|||+++.++... -.+.++.++|+|||+ |+++.+|... +..++...+.+.++
T Consensus 132 ~~i~GG-~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-rmLd~Gf~~~-i~~I~~~~p~~~qt 208 (513)
T COG0513 132 AVVYGG-VSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-RMLDMGFIDD-IEKILKALPPDRQT 208 (513)
T ss_pred EEEECC-CCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-hhhcCCCHHH-HHHHHHhCCcccEE
Confidence 334442 221111 1224899999999999998655 479999999999999 8999977766 66666767668999
Q ss_pred EEEecCCChHH---HhcccCCCCccccCCC-----cCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHH
Q 005291 154 LITSATLDGEK---VSKFFSNCPTLNVPGK-----LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (704)
Q Consensus 154 I~~SATl~~~~---~~~~~~~~~~i~i~~~-----~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~ 225 (704)
+++|||++... ...|+.++..+.+... .-.++..|......+ .....+..+......+++||||+++..
T Consensus 209 llfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~---~k~~~L~~ll~~~~~~~~IVF~~tk~~ 285 (513)
T COG0513 209 LLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE---EKLELLLKLLKDEDEGRVIVFVRTKRL 285 (513)
T ss_pred EEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH---HHHHHHHHHHhcCCCCeEEEEeCcHHH
Confidence 99999998742 3456665555555421 123344443332222 355566666666666789999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCcccccc
Q 005291 226 IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQ 305 (704)
Q Consensus 226 i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~ 305 (704)
++.++..|... ++.+..+||+|++++|.++++.|++|..+|+||||++++|||||+|.+||++++
T Consensus 286 ~~~l~~~l~~~----------g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~----- 350 (513)
T COG0513 286 VEELAESLRKR----------GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDL----- 350 (513)
T ss_pred HHHHHHHHHHC----------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccC-----
Confidence 99999999875 789999999999999999999999999999999999999999999999999443
Q ss_pred ccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCc
Q 005291 306 YNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (704)
Q Consensus 306 ~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~ 347 (704)
|.+...|+||+||+||. +.|.++.+++..
T Consensus 351 -------------p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 351 -------------PLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred -------------CCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 45777888999999999 789999999874
No 30
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.8e-34 Score=335.25 Aligned_cols=319 Identities=18% Similarity=0.146 Sum_probs=218.2
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHh--CCccCceee
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL--GVRLGEEVG 82 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~--~~~vg~~vg 82 (704)
.+++|.+.++.+.+|+++++++||||||| ++..+++.......+.+++++.|+|+|+.|+.+++.+.. +..++...|
T Consensus 37 p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~G 116 (742)
T TIGR03817 37 PWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDG 116 (742)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeC
Confidence 67999999999999999999999999999 444445544433345689999999999999999986543 122222222
Q ss_pred eeeecc-cccCcccceEEcchHHHHHHHHhC-----CCCCCCceEEEeCCCcCCCCH--HHHHHHHHHHHH---HhccCc
Q 005291 83 YAIRFE-DRTSERTLIKYLTDGVLLREILSN-----PDLSPYSVIILDEAHERSLNT--DILLGLVKRLVN---LRASKL 151 (704)
Q Consensus 83 ~~~~~~-~~~~~~~~I~~~T~g~Ll~~l~~~-----~~l~~~~~IIiDEaHer~l~~--d~l~~llk~l~~---~~~~~~ 151 (704)
.....+ .....+.+|+++||+++...++.. ..++++++|||||+|. ..+. ..+..+++++.. ..+.+.
T Consensus 117 dt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~-~~g~fg~~~~~il~rL~ri~~~~g~~~ 195 (742)
T TIGR03817 117 DTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS-YRGVFGSHVALVLRRLRRLCARYGASP 195 (742)
T ss_pred CCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh-ccCccHHHHHHHHHHHHHHHHhcCCCC
Confidence 111100 111245789999999997654322 1478999999999995 3321 123333444433 333478
Q ss_pred EEEEEecCCC-hHHHhcccCCCCccccCC--CcCc-eeEEe-cCCC-----------CcchHHHHHHHHHHHHccCCCCC
Q 005291 152 KILITSATLD-GEKVSKFFSNCPTLNVPG--KLYP-VEILH-SKER-----------PTSYLESALKTAIDIHVREPEGD 215 (704)
Q Consensus 152 kiI~~SATl~-~~~~~~~~~~~~~i~i~~--~~~p-v~~~~-~~~~-----------~~~~~~~~~~~~~~i~~~~~~g~ 215 (704)
|+|++|||++ +..+.+.+.+.++..+.. .... ....+ .+.. ...........+..+.. .+.+
T Consensus 196 q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~--~~~~ 273 (742)
T TIGR03817 196 VFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA--EGAR 273 (742)
T ss_pred EEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHH--CCCC
Confidence 9999999994 344443333334333332 2111 11211 1110 00111222233333322 3579
Q ss_pred EEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEE
Q 005291 216 VLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYV 295 (704)
Q Consensus 216 iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~V 295 (704)
+||||++++.++.++..|.+.+..... ..+..+..+||++++++|.++++.|++|+.++|||||++|+|||||++++|
T Consensus 274 ~IVF~~sr~~ae~l~~~l~~~l~~~~~--~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~V 351 (742)
T TIGR03817 274 TLTFVRSRRGAELVAAIARRLLGEVDP--DLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAV 351 (742)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHHhhcc--ccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEE
Confidence 999999999999999998876432211 124578899999999999999999999999999999999999999999999
Q ss_pred EeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCc
Q 005291 296 IDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (704)
Q Consensus 296 Id~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~ 347 (704)
|+.|+ |-|..+|+||+|||||. ..|.++.+.+.+
T Consensus 352 I~~~~------------------P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~ 386 (742)
T TIGR03817 352 VIAGF------------------PGTRASLWQQAGRAGRRGQGALVVLVARDD 386 (742)
T ss_pred EEeCC------------------CCCHHHHHHhccccCCCCCCcEEEEEeCCC
Confidence 99775 56889999999999999 679999888644
No 31
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.6e-33 Score=322.09 Aligned_cols=416 Identities=22% Similarity=0.279 Sum_probs=278.2
Q ss_pred HHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHH--HHhCCccCceeeeeeec
Q 005291 10 EETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVA--QELGVRLGEEVGYAIRF 87 (704)
Q Consensus 10 ~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva--~~~~~~vg~~vg~~~~~ 87 (704)
|..+-..+.++++++|++|||||||.++...+.......++++++++|+|+||.+.++++. +.+|.+++...| ....
T Consensus 37 q~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~Tg-D~~~ 115 (766)
T COG1204 37 QEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTG-DYDL 115 (766)
T ss_pred HHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecC-Cccc
Confidence 3334444556799999999999999666666655544446799999999999999999998 678888777776 2232
Q ss_pred ccccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHH----HHHHHHHHHHHHhccCcEEEEEecCC-C
Q 005291 88 EDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTD----ILLGLVKRLVNLRASKLKILITSATL-D 161 (704)
Q Consensus 88 ~~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d----~l~~llk~l~~~~~~~~kiI~~SATl-~ 161 (704)
......+++|+|+|++.+-..+.+.+ ++.++++|||||+|. ++.+ .+..++.+.....+ .++++++|||+ |
T Consensus 116 ~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~--l~d~~RG~~lE~iv~r~~~~~~-~~rivgLSATlpN 192 (766)
T COG1204 116 DDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHL--LGDRTRGPVLESIVARMRRLNE-LIRIVGLSATLPN 192 (766)
T ss_pred chhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeee--cCCcccCceehhHHHHHHhhCc-ceEEEEEeeecCC
Confidence 33334678999999999988776655 788999999999993 3333 35555666665554 68999999999 6
Q ss_pred hHHHhcccCCCCccccCCCcCc--------eeEEecCCCC----cchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHH
Q 005291 162 GEKVSKFFSNCPTLNVPGKLYP--------VEILHSKERP----TSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (704)
Q Consensus 162 ~~~~~~~~~~~~~i~i~~~~~p--------v~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~ 229 (704)
.+.+++|++..++ ....+..| ....+..... ...-......+...+ ..+|++||||+++..+...
T Consensus 193 ~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~~ 269 (766)
T COG1204 193 AEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESL--AEGGQVLVFVHSRKEAEKT 269 (766)
T ss_pred HHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHH--hcCCeEEEEEecCchHHHH
Confidence 6789999975444 22222111 1111111111 112222333333322 4578999999999999999
Q ss_pred HHHHHHHhhhcC---------C---C---------------CCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEccc
Q 005291 230 VSKLEDKIRSLD---------E---G---------------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNI 282 (704)
Q Consensus 230 ~~~L~~~~~~~~---------~---~---------------~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTni 282 (704)
++.|...+.... . . .+....+..||++|+.++|..+.+.|++|+++||+||++
T Consensus 270 A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpT 349 (766)
T COG1204 270 AKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPT 349 (766)
T ss_pred HHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechH
Confidence 999985332100 0 0 011245889999999999999999999999999999999
Q ss_pred ccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCC---CceEEEec-CCcccc--ccCCCC
Q 005291 283 AETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLY-PSTVYH--DEFLDV 356 (704)
Q Consensus 283 ae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~---~G~c~~L~-~~~~~~--~~~~~~ 356 (704)
++.|+|+|.-++||- | ...|||..|+ .+++..++.|++|||||.+ -|..+.+. +.+..+ ......
T Consensus 350 LA~GVNLPA~~VIIk-~---~~~y~~~~g~-----~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~ 420 (766)
T COG1204 350 LAAGVNLPARTVIIK-D---TRRYDPKGGI-----VDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQ 420 (766)
T ss_pred HhhhcCCcceEEEEe-e---eEEEcCCCCe-----EECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhc
Confidence 999999997766663 3 4568875553 5789999999999999983 35555444 222221 113334
Q ss_pred CCCccccC------ChHHHHHhhcccCccc--cccccc---cCCCC------CCHHHHHHHHHHHHHcc-cccCCC---C
Q 005291 357 TVPEIQRS------SLAGSVLYLKSLDLSD--INVLKF---DFLDP------PSSESLEDALKQLYLID-AIDENG---S 415 (704)
Q Consensus 357 ~~pei~r~------~l~~~~L~l~~l~~~~--~~~~~~---~~~~~------P~~~~l~~al~~L~~lg-ald~~~---~ 415 (704)
..||...+ ++...++.+.+.|-.- .....| -|..| -....+..+++.|.+.+ .++... .
T Consensus 421 ~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ 500 (766)
T COG1204 421 SEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDADWEALH 500 (766)
T ss_pred cCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceeeccccccc
Confidence 44554221 1222233333322110 000000 00111 13456788899999886 665543 7
Q ss_pred CCHHHHHHhcCCCChHhHHHHHHhhh
Q 005291 416 ITSIGRTMAELPLEPSLSRMLMEANE 441 (704)
Q Consensus 416 lT~lG~~~~~lpl~p~~~~~ll~~~~ 441 (704)
.|++|+.++.+.++|..++.+.....
T Consensus 501 ate~g~~~s~~yi~~~sa~~~~~~l~ 526 (766)
T COG1204 501 ATELGKLVSRLYIDPESAKIFRDLLA 526 (766)
T ss_pred hhHHHHHhhhccCCHHHHHHHHHHHH
Confidence 89999999999999999999887654
No 32
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3e-33 Score=312.41 Aligned_cols=305 Identities=18% Similarity=0.174 Sum_probs=210.8
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKT--t~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
..++|.++++.+.+|+++++++||||||| .++|.+. .++.++++.|+++|+.++..++.. .|.......+.
T Consensus 12 ~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~------~~~~~lVi~P~~~L~~dq~~~l~~-~gi~~~~l~~~ 84 (470)
T TIGR00614 12 FRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC------SDGITLVISPLISLMEDQVLQLKA-SGIPATFLNSS 84 (470)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH------cCCcEEEEecHHHHHHHHHHHHHH-cCCcEEEEeCC
Confidence 35789999999999999999999999999 3454432 245788999999999999888853 45443222221
Q ss_pred eeec------ccccCcccceEEcchHHHHHHH--HhCC-CCCCCceEEEeCCCcCCC-CHHHHHH--HHHHHHHHhccCc
Q 005291 84 AIRF------EDRTSERTLIKYLTDGVLLREI--LSNP-DLSPYSVIILDEAHERSL-NTDILLG--LVKRLVNLRASKL 151 (704)
Q Consensus 84 ~~~~------~~~~~~~~~I~~~T~g~Ll~~l--~~~~-~l~~~~~IIiDEaHer~l-~~d~l~~--llk~l~~~~~~~~ 151 (704)
.... ........+|+|+||+.+.... .... ...++++|||||||..+- ..++... .+..+....+ +.
T Consensus 85 ~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~ 163 (470)
T TIGR00614 85 QSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFP-NV 163 (470)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcC-CC
Confidence 1100 0112335789999999875321 1111 467899999999995332 1223222 2334444555 88
Q ss_pred EEEEEecCCChHH---HhcccC-CCCccccCCCcCceeEEecCCC-CcchHHHHHHHHHHHHc-cCCCCCEEEEeCCHHH
Q 005291 152 KILITSATLDGEK---VSKFFS-NCPTLNVPGKLYPVEILHSKER-PTSYLESALKTAIDIHV-REPEGDVLIFMTGQDD 225 (704)
Q Consensus 152 kiI~~SATl~~~~---~~~~~~-~~~~i~i~~~~~pv~~~~~~~~-~~~~~~~~~~~~~~i~~-~~~~g~iLVFl~~~~~ 225 (704)
+++++|||++... +.+.++ ..+.+.......| .+.|.... ..+.... +..... ..++..+||||+++++
T Consensus 164 ~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~-nl~~~v~~~~~~~~~~----l~~~l~~~~~~~~~IIF~~s~~~ 238 (470)
T TIGR00614 164 PIMALTATASPSVREDILRQLNLKNPQIFCTSFDRP-NLYYEVRRKTPKILED----LLRFIRKEFKGKSGIIYCPSRKK 238 (470)
T ss_pred ceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCC-CcEEEEEeCCccHHHH----HHHHHHHhcCCCceEEEECcHHH
Confidence 9999999998754 333432 1222211111111 11221111 1122222 222222 2334566999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCcccccc
Q 005291 226 IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQ 305 (704)
Q Consensus 226 i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~ 305 (704)
++.+++.|.+. ++.+.++||+|++++|.++++.|.+|..+|||||+++++|||+|+|++||+.+.
T Consensus 239 ~e~la~~L~~~----------g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~----- 303 (470)
T TIGR00614 239 SEQVTASLQNL----------GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSL----- 303 (470)
T ss_pred HHHHHHHHHhc----------CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCC-----
Confidence 99999999864 788999999999999999999999999999999999999999999999999664
Q ss_pred ccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccccc
Q 005291 306 YNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (704)
Q Consensus 306 ~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~~ 351 (704)
|.|..+|+||+|||||. .+|.|+.+|+..+...
T Consensus 304 -------------P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~ 337 (470)
T TIGR00614 304 -------------PKSMESYYQESGRAGRDGLPSECHLFYAPADINR 337 (470)
T ss_pred -------------CCCHHHHHhhhcCcCCCCCCceEEEEechhHHHH
Confidence 55888999999999999 6899999998876543
No 33
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.3e-33 Score=325.85 Aligned_cols=306 Identities=18% Similarity=0.171 Sum_probs=211.1
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKT--t~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
..+.|.+++..+..|+++++++|||+||| .++|.++. ++.++|+.|+++|+.++...+.. .+.......|.
T Consensus 461 FRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLmqDQV~~L~~-~GI~Aa~L~s~ 533 (1195)
T PLN03137 461 FRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQDQIMNLLQ-ANIPAASLSAG 533 (1195)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHHHHHHHHHHh-CCCeEEEEECC
Confidence 35789999999999999999999999999 45554432 46899999999999876665543 34433222221
Q ss_pred eeeccc-------c--cCcccceEEcchHHHHH------HHHhCCCCCCCceEEEeCCCcCCC-CHHHHHHH--HHHHHH
Q 005291 84 AIRFED-------R--TSERTLIKYLTDGVLLR------EILSNPDLSPYSVIILDEAHERSL-NTDILLGL--VKRLVN 145 (704)
Q Consensus 84 ~~~~~~-------~--~~~~~~I~~~T~g~Ll~------~l~~~~~l~~~~~IIiDEaHer~l-~~d~l~~l--lk~l~~ 145 (704)
..... . .....+|+|+||+.|.. .+..-.....+++|||||||+.+- ..||...+ +..+..
T Consensus 534 -~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~ 612 (1195)
T PLN03137 534 -MEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQ 612 (1195)
T ss_pred -CCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHH
Confidence 11111 0 11457899999998752 222112345589999999996332 22443332 223444
Q ss_pred HhccCcEEEEEecCCChHH---HhcccCCCCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHH-ccCCCCCEEEEeC
Q 005291 146 LRASKLKILITSATLDGEK---VSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIH-VREPEGDVLIFMT 221 (704)
Q Consensus 146 ~~~~~~kiI~~SATl~~~~---~~~~~~~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~g~iLVFl~ 221 (704)
..+ +.+++++|||++... +...++-...+.+........+.|........ ....+.... .....+..||||.
T Consensus 613 ~fp-~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~kk---~le~L~~~I~~~~~~esgIIYC~ 688 (1195)
T PLN03137 613 KFP-NIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKK---CLEDIDKFIKENHFDECGIIYCL 688 (1195)
T ss_pred hCC-CCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccchh---HHHHHHHHHHhcccCCCceeEeC
Confidence 455 788999999997653 44444322111111111112233332222211 112222222 1223567899999
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCcc
Q 005291 222 GQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYV 301 (704)
Q Consensus 222 ~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~ 301 (704)
++.+++.++..|... ++.+.++||+|++++|..+++.|..|+.+|||||+++++|||+|+|++||++++
T Consensus 689 SRke~E~LAe~L~~~----------Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydl- 757 (1195)
T PLN03137 689 SRMDCEKVAERLQEF----------GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL- 757 (1195)
T ss_pred chhHHHHHHHHHHHC----------CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCC-
Confidence 999999999999864 788999999999999999999999999999999999999999999999999765
Q ss_pred ccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccccc
Q 005291 302 KQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (704)
Q Consensus 302 k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~~ 351 (704)
|.|..+|+||+|||||. .+|.|+.+|+..++..
T Consensus 758 -----------------PkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~ 791 (1195)
T PLN03137 758 -----------------PKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIR 791 (1195)
T ss_pred -----------------CCCHHHHHhhhcccCCCCCCceEEEEecHHHHHH
Confidence 55888999999999999 6899999998766643
No 34
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=8.5e-34 Score=295.77 Aligned_cols=307 Identities=21% Similarity=0.274 Sum_probs=236.1
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHH-HHH-HHHHHhc--C-------CCCCcEEEEcchhhHHHHHHHHH---HHHHh
Q 005291 8 QYEETIVETVEQNPVVVVIGETGSGKS-TQL-SQILHRH--G-------YTKSGIIGVTQPRRVAAVSVARR---VAQEL 73 (704)
Q Consensus 8 ~~~~~il~~l~~~~~vii~gpTGsGKT-t~l-~~~l~~~--~-------~~~~~~ilv~~P~r~la~~~a~r---va~~~ 73 (704)
+.|...+....+++++|.+++|||||| .++ |.+.... + ...+...+++.|+|.++.|+... +...+
T Consensus 270 pIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~l 349 (673)
T KOG0333|consen 270 PIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPL 349 (673)
T ss_pred hHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccc
Confidence 556677778889999999999999999 443 3333222 1 12355889999999999998654 56667
Q ss_pred CCccCceeeeeeeccc---ccCcccceEEcchHHHHHHHHh-CCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-
Q 005291 74 GVRLGEEVGYAIRFED---RTSERTLIKYLTDGVLLREILS-NPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA- 148 (704)
Q Consensus 74 ~~~vg~~vg~~~~~~~---~~~~~~~I~~~T~g~Ll~~l~~-~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~- 148 (704)
|+.+...|| +.+++. +.+..++|+++|||.|+..+-+ ...++++.+||+|||+ |++|.+|-..+.+.+-. .|
T Consensus 350 g~r~vsvig-g~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldead-rmiDmgfE~dv~~iL~~-mPs 426 (673)
T KOG0333|consen 350 GIRTVSVIG-GLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEAD-RMIDMGFEPDVQKILEQ-MPS 426 (673)
T ss_pred cceEEEEec-ccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchh-hhhcccccHHHHHHHHh-CCc
Confidence 777777777 444444 3567899999999999988844 3478999999999999 78888876554433322 11
Q ss_pred ------------------------cCcEEEEEecCCChHH---HhcccCCCCccccCC--CcCc-eeEEecCCCCcchHH
Q 005291 149 ------------------------SKLKILITSATLDGEK---VSKFFSNCPTLNVPG--KLYP-VEILHSKERPTSYLE 198 (704)
Q Consensus 149 ------------------------~~~kiI~~SATl~~~~---~~~~~~~~~~i~i~~--~~~p-v~~~~~~~~~~~~~~ 198 (704)
.-.+.+++|||+++.. ...||..+.++.+.. +..| ++........ +
T Consensus 427 sn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~e----d 502 (673)
T KOG0333|consen 427 SNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSE----D 502 (673)
T ss_pred cccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecc----h
Confidence 0157899999997643 568888877766553 3333 2221111111 2
Q ss_pred HHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEE
Q 005291 199 SALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIV 278 (704)
Q Consensus 199 ~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlv 278 (704)
+..+.++.+..+....+|+||+|+++.++.+++.|.+. ++.+..|||+-+.++|..+++.|++|...|+|
T Consensus 503 ~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~----------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlV 572 (673)
T KOG0333|consen 503 EKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKA----------GYKVTTLHGGKSQEQRENALADFREGTGDILV 572 (673)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc----------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEE
Confidence 23555666666666789999999999999999999886 79999999999999999999999999999999
Q ss_pred EcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccc
Q 005291 279 STNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (704)
Q Consensus 279 aTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~ 349 (704)
|||+|++|||||+|.+||++.+.| |...|.||+||+||. ..|+++.++++++-
T Consensus 573 aTDvAgRGIDIpnVSlVinydmak------------------sieDYtHRIGRTgRAGk~GtaiSflt~~dt 626 (673)
T KOG0333|consen 573 ATDVAGRGIDIPNVSLVINYDMAK------------------SIEDYTHRIGRTGRAGKSGTAISFLTPADT 626 (673)
T ss_pred EecccccCCCCCccceeeecchhh------------------hHHHHHHHhccccccccCceeEEEeccchh
Confidence 999999999999999999976643 778999999999999 67999999999873
No 35
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.6e-33 Score=294.62 Aligned_cols=430 Identities=20% Similarity=0.232 Sum_probs=296.0
Q ss_pred HHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHh---CCccCceeeee-eecc--
Q 005291 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL---GVRLGEEVGYA-IRFE-- 88 (704)
Q Consensus 15 ~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~---~~~vg~~vg~~-~~~~-- 88 (704)
.-+.+|++.+|+++|+||||......=.......+++.++++|..++|.|-++.+.+.+ |..+...||.. ++-.
T Consensus 227 ~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~ 306 (830)
T COG1202 227 AGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREE 306 (830)
T ss_pred hccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCC
Confidence 34678999999999999998443322222222457899999999999999999887655 34444445532 1111
Q ss_pred ---cccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHH----HHHHHHHHHHHHhccCcEEEEEecCC-
Q 005291 89 ---DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTD----ILLGLVKRLVNLRASKLKILITSATL- 160 (704)
Q Consensus 89 ---~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d----~l~~llk~l~~~~~~~~kiI~~SATl- 160 (704)
..++.+.+|++.|.+-+--.+.....+.+++.|||||+| +++.+ -+.+++.++....+ +.|+|.+|||+
T Consensus 307 pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiH--tL~deERG~RLdGLI~RLr~l~~-~AQ~i~LSATVg 383 (830)
T COG1202 307 PVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIH--TLEDEERGPRLDGLIGRLRYLFP-GAQFIYLSATVG 383 (830)
T ss_pred ccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeee--eccchhcccchhhHHHHHHHhCC-CCeEEEEEeecC
Confidence 234567899999999888777777899999999999999 33332 37777888888887 99999999999
Q ss_pred ChHHHhcccCCCCccccCCCcCceeEEecCCCCc----chHHHHHHHHHHH-HccCCCCCEEEEeCCHHHHHHHHHHHHH
Q 005291 161 DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPT----SYLESALKTAIDI-HVREPEGDVLIFMTGQDDIEKLVSKLED 235 (704)
Q Consensus 161 ~~~~~~~~~~~~~~i~i~~~~~pv~~~~~~~~~~----~~~~~~~~~~~~i-~~~~~~g~iLVFl~~~~~i~~~~~~L~~ 235 (704)
|++.+++.++ +..+..++|+.|++-+..-.... +.+...++.-+.. ....-.|++|||.+++..++.+++.|..
T Consensus 384 Np~elA~~l~-a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~ 462 (830)
T COG1202 384 NPEELAKKLG-AKLVLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTG 462 (830)
T ss_pred ChHHHHHHhC-CeeEeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhc
Confidence 7888999984 66677788988887664332211 1122222221111 1223468999999999999999999976
Q ss_pred HhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCcccc
Q 005291 236 KIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSL 315 (704)
Q Consensus 236 ~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l 315 (704)
. ++.+.|+|++|+..+|+.+...|.++.+.++|+|..++.|||+|.-.+|.++ -.+
T Consensus 463 k----------G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEs--------------LaM 518 (830)
T COG1202 463 K----------GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFES--------------LAM 518 (830)
T ss_pred C----------CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHH--------------HHc
Confidence 5 8899999999999999999999999999999999999999999976665542 225
Q ss_pred ccccccHHhHHhhccccCCC---CCceEEEecCCc-cccccCCC------------CCCCccccCC----hHHHHHhhcc
Q 005291 316 DVVQISKVQANQRVGRAGRT---RPGKCYRLYPST-VYHDEFLD------------VTVPEIQRSS----LAGSVLYLKS 375 (704)
Q Consensus 316 ~~~~iS~~~~~QR~GRaGR~---~~G~c~~L~~~~-~~~~~~~~------------~~~pei~r~~----l~~~~L~l~~ 375 (704)
...|+|..+|.|+.|||||. ..|++|.|.... .|+..|.+ .+.|-+..-+ +++ +|. +
T Consensus 519 G~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~-vLA--~ 595 (830)
T COG1202 519 GIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEEN-VLA--S 595 (830)
T ss_pred ccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHH-HHH--H
Confidence 56799999999999999998 579999987432 33332222 1122222211 222 222 2
Q ss_pred cCcccc-c-ccccc--CCCCCCHHHHHHHHHHHHHcccccCCC---CCCHHHHHHhcCCCChHhHHHHHHhhhcCCHHHH
Q 005291 376 LDLSDI-N-VLKFD--FLDPPSSESLEDALKQLYLIDAIDENG---SITSIGRTMAELPLEPSLSRMLMEANEFGCLSQA 448 (704)
Q Consensus 376 l~~~~~-~-~~~~~--~~~~P~~~~l~~al~~L~~lgald~~~---~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~ 448 (704)
-|+.+. . +.... .+- ..-....++..|.++|.|+.+| ++|+.|+.++..-+.|.-|..|-.+. ..-. .-
T Consensus 596 ~~v~~s~~~i~~v~~~~~g--~~~~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v-~~~~-~p 671 (830)
T COG1202 596 AGVTNSLSVIERVNSLMLG--AAFDPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSFLGPSEAEFIREGV-LASM-DP 671 (830)
T ss_pred hhhcCcHHHHhhcChhhcc--ccCCHHHHHHHHHhcCCeeccCCEeeeccccceeEEeecCchHHHHHHHhh-hccC-Ch
Confidence 222110 0 00110 111 1123568899999999999887 69999999999999999999988875 2222 33
Q ss_pred HHHHHHhcc-CCcccCCCCchHHHHhhcCCCC
Q 005291 449 LTVAAMLSA-ETTLLPGRSKSTEKKRKHTPLE 479 (704)
Q Consensus 449 l~i~a~ls~-~~~f~~~~~~~~~~~~~~~~~~ 479 (704)
+.|++.|.- ++.++++.=++.-....+..+.
T Consensus 672 l~i~~~l~pfE~ayls~~l~r~i~~~~~~~vp 703 (830)
T COG1202 672 LRIAAELEPFENAYLSGFLKRAIESALRGRVP 703 (830)
T ss_pred HhHhhccccccccccChHHHHHHHHHhcCCCc
Confidence 556665543 3444444333333334444443
No 36
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-33 Score=290.57 Aligned_cols=326 Identities=19% Similarity=0.227 Sum_probs=241.0
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhc----CCCCCc--EEEEcchhhHHHHHHHHHHHHH----hCC
Q 005291 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH----GYTKSG--IIGVTQPRRVAAVSVARRVAQE----LGV 75 (704)
Q Consensus 7 ~~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~----~~~~~~--~ilv~~P~r~la~~~a~rva~~----~~~ 75 (704)
.+.|-.-+..+..++++++.++|||||| +++.+++... ...+.+ ..+++.|||+|+.|+.+-+... .+.
T Consensus 30 TpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l 109 (567)
T KOG0345|consen 30 TPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNL 109 (567)
T ss_pred CHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhcc
Confidence 3567778888999999999999999999 6666665543 112222 5788999999999997754322 344
Q ss_pred ccCceeeeeeecccc---cCcccceEEcchHHHHHHHHhCC---CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc
Q 005291 76 RLGEEVGYAIRFEDR---TSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (704)
Q Consensus 76 ~vg~~vg~~~~~~~~---~~~~~~I~~~T~g~Ll~~l~~~~---~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~ 149 (704)
.+...+|...-.++. ......|+++|||+|..++.... .+..++++|+|||+ |.++..|... +..|+...|.
T Consensus 110 ~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD-rLldmgFe~~-~n~ILs~LPK 187 (567)
T KOG0345|consen 110 NCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD-RLLDMGFEAS-VNTILSFLPK 187 (567)
T ss_pred ceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH-hHhcccHHHH-HHHHHHhccc
Confidence 444556642222221 12467899999999999986632 35589999999999 8999988766 6777888887
Q ss_pred CcEEEEEecCCChHH---HhcccCCCCccccCCCc---Cc--eeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeC
Q 005291 150 KLKILITSATLDGEK---VSKFFSNCPTLNVPGKL---YP--VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMT 221 (704)
Q Consensus 150 ~~kiI~~SATl~~~~---~~~~~~~~~~i~i~~~~---~p--v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~ 221 (704)
+.+.=++|||...+. ....+.|+..+.+.... .| +..+|....+ +.....++++..+...+++|||.+
T Consensus 188 QRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a----~eK~~~lv~~L~~~~~kK~iVFF~ 263 (567)
T KOG0345|consen 188 QRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA----DEKLSQLVHLLNNNKDKKCIVFFP 263 (567)
T ss_pred ccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecH----HHHHHHHHHHHhccccccEEEEec
Confidence 888999999995432 34455566555555432 44 5555554433 334455566666677789999999
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCcc
Q 005291 222 GQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYV 301 (704)
Q Consensus 222 ~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~ 301 (704)
|...++.....+.... ....++.+||.|...+|.++++.|.+....+++|||+|++|||||+|++||+
T Consensus 264 TCasVeYf~~~~~~~l--------~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ---- 331 (567)
T KOG0345|consen 264 TCASVEYFGKLFSRLL--------KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ---- 331 (567)
T ss_pred CcchHHHHHHHHHHHh--------CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe----
Confidence 9999999999888763 4788999999999999999999999988899999999999999999999998
Q ss_pred ccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEec--CCccccccCCCCCCCccccC
Q 005291 302 KQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLY--PSTVYHDEFLDVTVPEIQRS 364 (704)
Q Consensus 302 k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~--~~~~~~~~~~~~~~pei~r~ 364 (704)
||| |...+++.||+||+||. +.|..+.+. .+++|..-|.....|++.+.
T Consensus 332 ----~Dp----------P~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~ 383 (567)
T KOG0345|consen 332 ----FDP----------PKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERI 383 (567)
T ss_pred ----cCC----------CCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhh
Confidence 444 55677889999999998 567665554 45555553444555665554
No 37
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-34 Score=294.99 Aligned_cols=309 Identities=22% Similarity=0.274 Sum_probs=230.5
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCCCCC----cEEEEcchhhHHHHHHHH---HHHHHhCCccCc
Q 005291 8 QYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTKS----GIIGVTQPRRVAAVSVAR---RVAQELGVRLGE 79 (704)
Q Consensus 8 ~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~~~~~~----~~ilv~~P~r~la~~~a~---rva~~~~~~vg~ 79 (704)
+.|...++...-|++++-+|-|||||| .++.++|..+.+.+. .+|+|++|||+|++|++. .+++.....+|.
T Consensus 206 pIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L 285 (691)
T KOG0338|consen 206 PIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGL 285 (691)
T ss_pred chhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeee
Confidence 456677777778999999999999999 677777776665443 389999999999998865 567777777777
Q ss_pred eeee-eeecc-cccCcccceEEcchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEE
Q 005291 80 EVGY-AIRFE-DRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (704)
Q Consensus 80 ~vg~-~~~~~-~~~~~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~ 155 (704)
.+|. .++.. ......++|+++|||.|..++.+.| .+.++.++|+|||+ |+++..|... ++.|++.++.+.|.++
T Consensus 286 ~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-RMLeegFade-mnEii~lcpk~RQTmL 363 (691)
T KOG0338|consen 286 AVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-RMLEEGFADE-MNEIIRLCPKNRQTML 363 (691)
T ss_pred eecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-HHHHHHHHHH-HHHHHHhcccccccee
Confidence 7772 12221 1223568999999999999998887 68899999999999 9999877766 7888888988999999
Q ss_pred EecCCChHH--Hhcc-cCCCCccccCCC-cCc--eeEEecCCC-Ccch-HHHHHHHHHHHHccCCCCCEEEEeCCHHHHH
Q 005291 156 TSATLDGEK--VSKF-FSNCPTLNVPGK-LYP--VEILHSKER-PTSY-LESALKTAIDIHVREPEGDVLIFMTGQDDIE 227 (704)
Q Consensus 156 ~SATl~~~~--~~~~-~~~~~~i~i~~~-~~p--v~~~~~~~~-~~~~-~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~ 227 (704)
+||||..+. +... ++.+..+.+... ..+ +...|.... ..+- -+..+..++. ..-...++||+.+.+.++
T Consensus 364 FSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~---rtf~~~~ivFv~tKk~AH 440 (691)
T KOG0338|consen 364 FSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLIT---RTFQDRTIVFVRTKKQAH 440 (691)
T ss_pred ehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHH---HhcccceEEEEehHHHHH
Confidence 999996543 3332 222222222221 111 111111111 0000 1112222221 112458999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCcccccccc
Q 005291 228 KLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYN 307 (704)
Q Consensus 228 ~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~ 307 (704)
++.-.|-- .++.+.-+||+|++++|...++.|+++++.|||||++|++|+||++|..|||+.+
T Consensus 441 Rl~IllGL----------lgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~m------- 503 (691)
T KOG0338|consen 441 RLRILLGL----------LGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAM------- 503 (691)
T ss_pred HHHHHHHH----------hhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccC-------
Confidence 98776643 3788899999999999999999999999999999999999999999999999443
Q ss_pred CCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccc
Q 005291 308 PSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (704)
Q Consensus 308 ~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~ 349 (704)
|.+...|+||.||+.|. +.|..+.|..+.+-
T Consensus 504 -----------P~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dR 535 (691)
T KOG0338|consen 504 -----------PKTIEHYLHRVGRTARAGRAGRSVTLVGESDR 535 (691)
T ss_pred -----------chhHHHHHHHhhhhhhcccCcceEEEeccccH
Confidence 77899999999999999 78999999988754
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=6.9e-33 Score=317.55 Aligned_cols=304 Identities=17% Similarity=0.204 Sum_probs=213.5
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHH--HHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKST--QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt--~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
.++.|.++++.+..|+++++++|||+|||. ++|.++. .+.++++.|+++|+.++...+.. .|.......+.
T Consensus 26 ~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv~~l~~-~gi~~~~~~s~ 98 (607)
T PRK11057 26 FRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQVDQLLA-NGVAAACLNST 98 (607)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHHHHHHH-cCCcEEEEcCC
Confidence 457899999999999999999999999993 4554432 35788899999999999888754 34432211111
Q ss_pred eee------cccccCcccceEEcchHHHHHHH-HhCCCCCCCceEEEeCCCcCCCC-HHHH--HHHHHHHHHHhccCcEE
Q 005291 84 AIR------FEDRTSERTLIKYLTDGVLLREI-LSNPDLSPYSVIILDEAHERSLN-TDIL--LGLVKRLVNLRASKLKI 153 (704)
Q Consensus 84 ~~~------~~~~~~~~~~I~~~T~g~Ll~~l-~~~~~l~~~~~IIiDEaHer~l~-~d~l--~~llk~l~~~~~~~~ki 153 (704)
... +........+++|+||+.+.... .......++++|||||||+.+-. .++. ...+..+....+ +.++
T Consensus 99 ~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p-~~~~ 177 (607)
T PRK11057 99 QTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-TLPF 177 (607)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCC-CCcE
Confidence 000 11122345689999999887432 22223457899999999964322 2222 122444555555 8899
Q ss_pred EEEecCCChHH---HhcccC-CCCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHH
Q 005291 154 LITSATLDGEK---VSKFFS-NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (704)
Q Consensus 154 I~~SATl~~~~---~~~~~~-~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~ 229 (704)
+++|||++... +...++ ..+.+.+.....| .+.|........ ...++.......++++||||+++++++.+
T Consensus 178 v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~-nl~~~v~~~~~~----~~~l~~~l~~~~~~~~IIFc~tr~~~e~l 252 (607)
T PRK11057 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYTLVEKFKP----LDQLMRYVQEQRGKSGIIYCNSRAKVEDT 252 (607)
T ss_pred EEEecCCChhHHHHHHHHhCCCCeEEEECCCCCC-cceeeeeeccch----HHHHHHHHHhcCCCCEEEEECcHHHHHHH
Confidence 99999997654 223322 2233222221111 122211111111 12233333345567999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCC
Q 005291 230 VSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPS 309 (704)
Q Consensus 230 ~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~ 309 (704)
++.|.+. ++.+.++||+|++++|.++++.|..|..+|||||+++++|||+|+|++||+.++
T Consensus 253 a~~L~~~----------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~--------- 313 (607)
T PRK11057 253 AARLQSR----------GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI--------- 313 (607)
T ss_pred HHHHHhC----------CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCC---------
Confidence 9999865 788999999999999999999999999999999999999999999999999654
Q ss_pred CCccccccccccHHhHHhhccccCCC-CCceEEEecCCcccc
Q 005291 310 SGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (704)
Q Consensus 310 ~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~ 350 (704)
|.|..+|+||+|||||. .+|.|+.+|+..+..
T Consensus 314 ---------P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~ 346 (607)
T PRK11057 314 ---------PRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (607)
T ss_pred ---------CCCHHHHHHHhhhccCCCCCceEEEEeCHHHHH
Confidence 55889999999999999 579999999887653
No 39
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-33 Score=271.87 Aligned_cols=312 Identities=18% Similarity=0.242 Sum_probs=233.1
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCCC-CCcEEEEcchhhHHHHHHHHHH---HHHhCCccCcee
Q 005291 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYT-KSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEEV 81 (704)
Q Consensus 7 ~~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~~~~-~~~~ilv~~P~r~la~~~a~rv---a~~~~~~vg~~v 81 (704)
...|+..+..|.+|++++..+..|+||| |+..-.+...... ....++++.|+|+||.|+-+.+ +..++..+...+
T Consensus 51 S~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~haci 130 (400)
T KOG0328|consen 51 SAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACI 130 (400)
T ss_pred hHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEe
Confidence 3567888889999999999999999999 4433333333332 2358999999999999998765 345555555555
Q ss_pred eeeeeccc--ccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEec
Q 005291 82 GYAIRFED--RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (704)
Q Consensus 82 g~~~~~~~--~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SA 158 (704)
|...-.++ +.....+++..|||..+.++.... .-..+.++|+||++| +++..+-.. +-.+.+..|++.|++++||
T Consensus 131 gg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe-mL~kgfk~Q-iydiyr~lp~~~Qvv~~SA 208 (400)
T KOG0328|consen 131 GGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE-MLNKGFKEQ-IYDIYRYLPPGAQVVLVSA 208 (400)
T ss_pred cCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHH-HHHhhHHHH-HHHHHHhCCCCceEEEEec
Confidence 43222222 223567899999999999885443 567889999999996 556555544 4456666777999999999
Q ss_pred CCChHHH---hcccCCCCccccCCCcCce---eEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHH
Q 005291 159 TLDGEKV---SKFFSNCPTLNVPGKLYPV---EILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (704)
Q Consensus 159 Tl~~~~~---~~~~~~~~~i~i~~~~~pv---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~ 232 (704)
|++.+.+ ..|..++..+.+.....+. ..+|......++ .++++.++...-.-.+.+|||+++..+..+.+.
T Consensus 209 Tlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Eew---KfdtLcdLYd~LtItQavIFcnTk~kVdwLtek 285 (400)
T KOG0328|consen 209 TLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEW---KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEK 285 (400)
T ss_pred cCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhh---hHhHHHHHhhhhehheEEEEecccchhhHHHHH
Confidence 9998764 4555555444443332332 234433333333 344555555445556899999999999999888
Q ss_pred HHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCc
Q 005291 233 LEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGM 312 (704)
Q Consensus 233 L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~ 312 (704)
+++. ++.|...||+|+.++|.++...|+.|+.+|+++|++-++|+|+|.|..|||+++
T Consensus 286 m~~~----------nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDL------------ 343 (400)
T KOG0328|consen 286 MREA----------NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDL------------ 343 (400)
T ss_pred HHhh----------CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCC------------
Confidence 8875 788999999999999999999999999999999999999999999999999443
Q ss_pred cccccccccHHhHHhhccccCCC-CCceEEEecCCccccc
Q 005291 313 YSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (704)
Q Consensus 313 ~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~~ 351 (704)
|..+..|+||+||+||. +.|+++.+...++...
T Consensus 344 ------P~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~ 377 (400)
T KOG0328|consen 344 ------PNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRI 377 (400)
T ss_pred ------CccHHHHhhhhccccccCCcceEEEEecHHHHHH
Confidence 55668899999999999 7899999988776643
No 40
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.2e-32 Score=286.46 Aligned_cols=310 Identities=18% Similarity=0.200 Sum_probs=227.7
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHH--HHhcCC--CCCcEEEEcchhhHHHHHHHHHHHHHhCCccCc
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQI--LHRHGY--TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKT--t~l~~~--l~~~~~--~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~ 79 (704)
....|+..+.-+..|++++..|-|||||| .++|.+ +....+ .++..++++.|||++|.|++....+.+....+.
T Consensus 105 MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~ 184 (543)
T KOG0342|consen 105 MTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESI 184 (543)
T ss_pred hhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCc
Confidence 45678888889999999999999999999 344433 222222 234478999999999999988776655443344
Q ss_pred eeeeeeecccc------cCcccceEEcchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCc
Q 005291 80 EVGYAIRFEDR------TSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL 151 (704)
Q Consensus 80 ~vg~~~~~~~~------~~~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~ 151 (704)
.+|+.+..... ......|+|+|||.|+.++.+.+ ...+.+++|+|||+ |.++..|-.. ++.++...|...
T Consensus 185 ~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD-rlLd~GF~~d-i~~Ii~~lpk~r 262 (543)
T KOG0342|consen 185 TVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD-RLLDIGFEED-VEQIIKILPKQR 262 (543)
T ss_pred ceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch-hhhhcccHHH-HHHHHHhccccc
Confidence 44444433222 23478999999999999998766 56777899999999 8999888777 566667777789
Q ss_pred EEEEEecCCChHH--Hhcc-c-CCCCccccCCCcCc-----eeEEecCCCCcchHHHHHHHHHHHHccCC-CCCEEEEeC
Q 005291 152 KILITSATLDGEK--VSKF-F-SNCPTLNVPGKLYP-----VEILHSKERPTSYLESALKTAIDIHVREP-EGDVLIFMT 221 (704)
Q Consensus 152 kiI~~SATl~~~~--~~~~-~-~~~~~i~i~~~~~p-----v~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~iLVFl~ 221 (704)
|-+++|||++.+. ++.. + .++..+.+....-+ ++.-|...+.... +..++....... ..+|+|||+
T Consensus 263 qt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~----f~ll~~~LKk~~~~~KiiVF~s 338 (543)
T KOG0342|consen 263 QTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSR----FSLLYTFLKKNIKRYKIIVFFS 338 (543)
T ss_pred eeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccch----HHHHHHHHHHhcCCceEEEEec
Confidence 9999999998653 2221 1 12333333222111 2222322222222 222222222222 379999999
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCcc
Q 005291 222 GQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYV 301 (704)
Q Consensus 222 ~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~ 301 (704)
|...+..+++.|... ++.|.-+||++++..|..++..|.+.+.-|+||||++++|+|+|+|++||..|.
T Consensus 339 T~~~vk~~~~lL~~~----------dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~- 407 (543)
T KOG0342|consen 339 TCMSVKFHAELLNYI----------DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDP- 407 (543)
T ss_pred hhhHHHHHHHHHhhc----------CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCC-
Confidence 999999999999853 788999999999999999999999999999999999999999999999998553
Q ss_pred ccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccc
Q 005291 302 KQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (704)
Q Consensus 302 k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~ 349 (704)
|-...+|+||.||+||. ..|+.+.+..+++.
T Consensus 408 -----------------P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El 439 (543)
T KOG0342|consen 408 -----------------PSDPEQYIHRVGRTAREGKEGKALLLLAPWEL 439 (543)
T ss_pred -----------------CCCHHHHHHHhccccccCCCceEEEEeChhHH
Confidence 56788999999999998 67999888766543
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=6.9e-32 Score=310.10 Aligned_cols=303 Identities=19% Similarity=0.204 Sum_probs=211.6
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKT--t~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
..+.|.++++.+..|+++++++|||+||| .++|.++ .++.++|+.|+++++.++...+.. +|..+....+
T Consensus 14 fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~------~~g~~lVisPl~sL~~dq~~~l~~-~gi~~~~~~s- 85 (591)
T TIGR01389 14 FRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL------LKGLTVVISPLISLMKDQVDQLRA-AGVAAAYLNS- 85 (591)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH------cCCcEEEEcCCHHHHHHHHHHHHH-cCCcEEEEeC-
Confidence 35789999999999999999999999999 3444432 245678889999999999888854 4544321111
Q ss_pred eeeccc-------ccCcccceEEcchHHHHHHH-HhCCCCCCCceEEEeCCCcCCCC-HHHHHH--HHHHHHHHhccCcE
Q 005291 84 AIRFED-------RTSERTLIKYLTDGVLLREI-LSNPDLSPYSVIILDEAHERSLN-TDILLG--LVKRLVNLRASKLK 152 (704)
Q Consensus 84 ~~~~~~-------~~~~~~~I~~~T~g~Ll~~l-~~~~~l~~~~~IIiDEaHer~l~-~d~l~~--llk~l~~~~~~~~k 152 (704)
....+. ......+|+|+||+.+.... .......++++|||||||+.+.. .++... -+..+....+ +.+
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~-~~~ 164 (591)
T TIGR01389 86 TLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFP-QVP 164 (591)
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCC-CCC
Confidence 111111 11235689999999886433 22224568999999999964422 233222 2334444454 667
Q ss_pred EEEEecCCChHH---HhcccCC-CCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHH
Q 005291 153 ILITSATLDGEK---VSKFFSN-CPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEK 228 (704)
Q Consensus 153 iI~~SATl~~~~---~~~~~~~-~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~ 228 (704)
++++|||.+... +..+++- .+...+.+. ....+.|......+. ...+.+......+++.||||+++++++.
T Consensus 165 vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~-~r~nl~~~v~~~~~~----~~~l~~~l~~~~~~~~IIf~~sr~~~e~ 239 (591)
T TIGR01389 165 RIALTATADAETRQDIRELLRLADANEFITSF-DRPNLRFSVVKKNNK----QKFLLDYLKKHRGQSGIIYASSRKKVEE 239 (591)
T ss_pred EEEEEeCCCHHHHHHHHHHcCCCCCCeEecCC-CCCCcEEEEEeCCCH----HHHHHHHHHhcCCCCEEEEECcHHHHHH
Confidence 999999997654 4444432 111111111 111222221111111 1222232223336789999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccC
Q 005291 229 LVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNP 308 (704)
Q Consensus 229 ~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~ 308 (704)
+++.|... ++.+.++||+|+.++|..+++.|..|..+|||||+++++|||+|+|++||+.+.
T Consensus 240 la~~L~~~----------g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~-------- 301 (591)
T TIGR01389 240 LAERLESQ----------GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDM-------- 301 (591)
T ss_pred HHHHHHhC----------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCC--------
Confidence 99999764 678899999999999999999999999999999999999999999999999654
Q ss_pred CCCccccccccccHHhHHhhccccCCC-CCceEEEecCCcccc
Q 005291 309 SSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (704)
Q Consensus 309 ~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~ 350 (704)
|.|..+|.||+|||||. .+|.|+.+|+..++.
T Consensus 302 ----------p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 302 ----------PGNLESYYQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred ----------CCCHHHHhhhhccccCCCCCceEEEecCHHHHH
Confidence 55788999999999998 589999999887654
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.8e-31 Score=316.15 Aligned_cols=313 Identities=20% Similarity=0.202 Sum_probs=209.9
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHH-HHHHHHhcC---C----CCCcEEEEcchhhHHHHHHHHHHHH------
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHG---Y----TKSGIIGVTQPRRVAAVSVARRVAQ------ 71 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt~-l~~~l~~~~---~----~~~~~ilv~~P~r~la~~~a~rva~------ 71 (704)
.+++|.+.++.+.+|++++|++|||||||.. +.+++.... . ..+..++++.|+|+|+.|+++++.+
T Consensus 33 ~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~ 112 (876)
T PRK13767 33 FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIR 112 (876)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999932 222332211 1 2245799999999999999886542
Q ss_pred ----HhCCcc-Cceeeeee---eccc---ccCcccceEEcchHHHHHHHHhCC---CCCCCceEEEeCCCcCCCCH---H
Q 005291 72 ----ELGVRL-GEEVGYAI---RFED---RTSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNT---D 134 (704)
Q Consensus 72 ----~~~~~v-g~~vg~~~---~~~~---~~~~~~~I~~~T~g~Ll~~l~~~~---~l~~~~~IIiDEaHer~l~~---d 134 (704)
..|... +..++... .... ......+|+++||+.|...+.... .+.++++|||||+|+ ..+. .
T Consensus 113 ~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~-l~~~~RG~ 191 (876)
T PRK13767 113 EIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHS-LAENKRGV 191 (876)
T ss_pred HHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhh-hccCccHH
Confidence 123332 22222110 0001 112356899999999876553321 478999999999995 3332 2
Q ss_pred HHHHHHHHHHHHhccCcEEEEEecCCC-hHHHhcccCCC-------CccccCC---CcCceeEEecC-----CCCcchHH
Q 005291 135 ILLGLVKRLVNLRASKLKILITSATLD-GEKVSKFFSNC-------PTLNVPG---KLYPVEILHSK-----ERPTSYLE 198 (704)
Q Consensus 135 ~l~~llk~l~~~~~~~~kiI~~SATl~-~~~~~~~~~~~-------~~i~i~~---~~~pv~~~~~~-----~~~~~~~~ 198 (704)
.+...+.++....+.+.++|++|||++ .+.+..|+.+. ++..+.. +.+++.+.... ........
T Consensus 192 ~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~ 271 (876)
T PRK13767 192 HLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISE 271 (876)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHH
Confidence 344455666655544789999999994 45677777542 1111111 11222221110 00011112
Q ss_pred HHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEE
Q 005291 199 SALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIV 278 (704)
Q Consensus 199 ~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlv 278 (704)
.....+.... ...+++||||+++..++.++..|.+..... ..+..+.++||+|+.++|..+++.|++|..+|||
T Consensus 272 ~l~~~L~~~i--~~~~~~LVF~nTr~~ae~la~~L~~~~~~~----~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLV 345 (876)
T PRK13767 272 ALYETLHELI--KEHRTTLIFTNTRSGAERVLYNLRKRFPEE----YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVV 345 (876)
T ss_pred HHHHHHHHHH--hcCCCEEEEeCCHHHHHHHHHHHHHhchhh----ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 2222233222 235689999999999999999998753211 1246789999999999999999999999999999
Q ss_pred EcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC----CCceEEEe
Q 005291 279 STNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT----RPGKCYRL 343 (704)
Q Consensus 279 aTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~----~~G~c~~L 343 (704)
||+++++|||+|+|++||+.|. |.|.++|.||+|||||. ..|.++..
T Consensus 346 aTs~Le~GIDip~Vd~VI~~~~------------------P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 346 SSTSLELGIDIGYIDLVVLLGS------------------PKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred ECChHHhcCCCCCCcEEEEeCC------------------CCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999998553 56889999999999986 24667764
No 43
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-32 Score=287.04 Aligned_cols=313 Identities=19% Similarity=0.242 Sum_probs=243.1
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHH---hcCCCC--CcEEEEcchhhHHHHHHHHHH---HHHhCCc
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILH---RHGYTK--SGIIGVTQPRRVAAVSVARRV---AQELGVR 76 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~---~~~~~~--~~~ilv~~P~r~la~~~a~rv---a~~~~~~ 76 (704)
....|.+.+.....|.+++-.+.|||||| +++.+.+. ...|.+ |--.+|+.|||+||.|+...+ .+..+..
T Consensus 92 ~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fS 171 (758)
T KOG0343|consen 92 MTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFS 171 (758)
T ss_pred HHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccc
Confidence 34677888888889999999999999999 44444443 344432 447889999999999987765 4555677
Q ss_pred cCceeee-eeecccccCcccceEEcchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEE
Q 005291 77 LGEEVGY-AIRFEDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (704)
Q Consensus 77 vg~~vg~-~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~ki 153 (704)
.|..+|. .+.++.......+|+|||||+|++++...+ ..+++.++|+|||+ |.++.+|-.. +..|+...|...|.
T Consensus 172 aGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R~LDMGFk~t-L~~Ii~~lP~~RQT 249 (758)
T KOG0343|consen 172 AGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-RMLDMGFKKT-LNAIIENLPKKRQT 249 (758)
T ss_pred cceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-HHHHHhHHHH-HHHHHHhCChhhee
Confidence 7777774 344555555678999999999999998887 45678899999999 9999988665 67777778878999
Q ss_pred EEEecCCCh--HHHhcc-cCCCCccccCCC---cCc--eeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHH
Q 005291 154 LITSATLDG--EKVSKF-FSNCPTLNVPGK---LYP--VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (704)
Q Consensus 154 I~~SATl~~--~~~~~~-~~~~~~i~i~~~---~~p--v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~ 225 (704)
+++|||... ..+++. +.++..+.+... .+| +..+|...+ +...+..++.........++|||+.+.++
T Consensus 250 LLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~----l~~Ki~~L~sFI~shlk~K~iVF~SscKq 325 (758)
T KOG0343|consen 250 LLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVP----LEDKIDMLWSFIKSHLKKKSIVFLSSCKQ 325 (758)
T ss_pred eeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEe----hhhHHHHHHHHHHhccccceEEEEehhhH
Confidence 999999843 345554 234444444311 122 223333222 23445556666666677899999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCcccccc
Q 005291 226 IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQ 305 (704)
Q Consensus 226 i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~ 305 (704)
+..+++.+.+. .|++.++.|||.|++..|..++..|-..+--|++||+++++|+|+|.|++||..+
T Consensus 326 vkf~~e~F~rl--------rpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~D------ 391 (758)
T KOG0343|consen 326 VKFLYEAFCRL--------RPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVD------ 391 (758)
T ss_pred HHHHHHHHHhc--------CCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEec------
Confidence 99999998876 3799999999999999999999999988889999999999999999999999733
Q ss_pred ccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCcccc
Q 005291 306 YNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (704)
Q Consensus 306 ~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~ 350 (704)
+|....+|+||+||+.|. ..|.|+.+.++.+.+
T Consensus 392 ------------CPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE 425 (758)
T KOG0343|consen 392 ------------CPEDVDTYIHRVGRTARYKERGESLLMLTPSEEE 425 (758)
T ss_pred ------------CchhHHHHHHHhhhhhcccCCCceEEEEcchhHH
Confidence 588899999999999999 679999988877643
No 44
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.3e-31 Score=267.81 Aligned_cols=310 Identities=21% Similarity=0.283 Sum_probs=229.4
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCCCC-CcEEEEcchhhHHHHHHHHHHH---HHhCCccCcee
Q 005291 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTK-SGIIGVTQPRRVAAVSVARRVA---QELGVRLGEEV 81 (704)
Q Consensus 7 ~~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~~~~~-~~~ilv~~P~r~la~~~a~rva---~~~~~~vg~~v 81 (704)
.+.|...+..|..|++++-+|.|||||| .+..+++......+ +...+++.|+|++|.|+++++. +.++..+...+
T Consensus 31 TpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~viv 110 (442)
T KOG0340|consen 31 TPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIV 110 (442)
T ss_pred CchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEE
Confidence 3568889999999999999999999999 56666666655444 4478899999999999999974 34445544455
Q ss_pred eee--eecccccCcccceEEcchHHHHHHHHhCC-----CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEE
Q 005291 82 GYA--IRFEDRTSERTLIKYLTDGVLLREILSNP-----DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (704)
Q Consensus 82 g~~--~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~-----~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI 154 (704)
|.. +......+.+.+++++|||++...+.+++ .+.++.++|+|||+ |.++.+|-.. |+.+.+..|...+.+
T Consensus 111 GG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-rvL~~~f~d~-L~~i~e~lP~~RQtL 188 (442)
T KOG0340|consen 111 GGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-RVLAGCFPDI-LEGIEECLPKPRQTL 188 (442)
T ss_pred ccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-hhhccchhhH-HhhhhccCCCccceE
Confidence 532 23334456789999999999999887773 68899999999999 8888876544 677777777566999
Q ss_pred EEecCCChHHHhcccCCCCcc-------cc-CCCcCceeEE---ecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCH
Q 005291 155 ITSATLDGEKVSKFFSNCPTL-------NV-PGKLYPVEIL---HSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQ 223 (704)
Q Consensus 155 ~~SATl~~~~~~~~~~~~~~i-------~i-~~~~~pv~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 223 (704)
++|||+... +...++ +++- .. ++-.. ++.. |...+ .+-.+..+-.++.....++.+.++||+++.
T Consensus 189 lfSATitd~-i~ql~~-~~i~k~~a~~~e~~~~vst-vetL~q~yI~~~-~~vkdaYLv~~Lr~~~~~~~~simIFvntt 264 (442)
T KOG0340|consen 189 LFSATITDT-IKQLFG-CPITKSIAFELEVIDGVST-VETLYQGYILVS-IDVKDAYLVHLLRDFENKENGSIMIFVNTT 264 (442)
T ss_pred EEEeehhhH-HHHhhc-CCcccccceEEeccCCCCc-hhhhhhheeecc-hhhhHHHHHHHHhhhhhccCceEEEEeehh
Confidence 999999643 444442 2211 11 11111 1111 11111 111112222233334444789999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCcccc
Q 005291 224 DDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQ 303 (704)
Q Consensus 224 ~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~ 303 (704)
.+++.++..|+.. ++.+..+||.|++.+|...+..|+.+..+|+|||++|.+|+|||.|..|||..
T Consensus 265 r~cQ~l~~~l~~l----------e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~d---- 330 (442)
T KOG0340|consen 265 RECQLLSMTLKNL----------EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHD---- 330 (442)
T ss_pred HHHHHHHHHHhhh----------ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecC----
Confidence 9999999998875 89999999999999999999999999999999999999999999999999944
Q ss_pred ccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCcccc
Q 005291 304 RQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (704)
Q Consensus 304 ~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~ 350 (704)
++ -..-.|+||.||+.|. +.|..+.++++.+.+
T Consensus 331 -----------iP---r~P~~yiHRvGRtARAGR~G~aiSivt~rDv~ 364 (442)
T KOG0340|consen 331 -----------IP---RDPKDYIHRVGRTARAGRKGMAISIVTQRDVE 364 (442)
T ss_pred -----------CC---CCHHHHHHhhcchhcccCCcceEEEechhhHH
Confidence 33 3455677999999998 678999998865554
No 45
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=7.3e-32 Score=265.64 Aligned_cols=310 Identities=19% Similarity=0.232 Sum_probs=234.7
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCCCC-CcEEEEcchhhHHHHHHHH---HHHHHhCCccCceee
Q 005291 8 QYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTK-SGIIGVTQPRRVAAVSVAR---RVAQELGVRLGEEVG 82 (704)
Q Consensus 8 ~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~~~~~-~~~ilv~~P~r~la~~~a~---rva~~~~~~vg~~vg 82 (704)
+.|++-+.....|++++.-+.+|+||| ++..+.+....... .-..++++|+|++|.|..+ ++++.++..+..++|
T Consensus 110 PiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttG 189 (459)
T KOG0326|consen 110 PIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTG 189 (459)
T ss_pred CccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecC
Confidence 456677777789999999999999999 55555555554432 2367889999999987654 556666766666666
Q ss_pred eeeecccc--cCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecC
Q 005291 83 YAIRFEDR--TSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (704)
Q Consensus 83 ~~~~~~~~--~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SAT 159 (704)
...-.++. .....+++++|||+.+......- .+++..++|+|||+ ..++.+|... +..++...|++.++++.|||
T Consensus 190 GT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD-KlLs~~F~~~-~e~li~~lP~~rQillySAT 267 (459)
T KOG0326|consen 190 GTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD-KLLSVDFQPI-VEKLISFLPKERQILLYSAT 267 (459)
T ss_pred CcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh-hhhchhhhhH-HHHHHHhCCccceeeEEecc
Confidence 44333332 24568999999999999885543 79999999999999 6788777554 77788888889999999999
Q ss_pred CChHH---HhcccCCCCccccCCCcC--ceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHH
Q 005291 160 LDGEK---VSKFFSNCPTLNVPGKLY--PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLE 234 (704)
Q Consensus 160 l~~~~---~~~~~~~~~~i~i~~~~~--pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~ 234 (704)
.+-.. ..+++.++..++.-.... .|..+|....+.. .+..+-.+..+-.-.+.+||||+...+|-++..+.
T Consensus 268 FP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~q----KvhCLntLfskLqINQsIIFCNS~~rVELLAkKIT 343 (459)
T KOG0326|consen 268 FPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQ----KVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKIT 343 (459)
T ss_pred cchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhh----hhhhHHHHHHHhcccceEEEeccchHhHHHHHHHH
Confidence 97532 456666666665544332 2334443322211 12222222223334588999999999999999888
Q ss_pred HHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccc
Q 005291 235 DKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYS 314 (704)
Q Consensus 235 ~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~ 314 (704)
+. ++.+++.|+.|..+.|.++|..|++|..+.+|||+.+.+||||+.|++|||++++|
T Consensus 344 el----------GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk------------ 401 (459)
T KOG0326|consen 344 EL----------GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPK------------ 401 (459)
T ss_pred hc----------cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCC------------
Confidence 75 89999999999999999999999999999999999999999999999999988744
Q ss_pred cccccccHHhHHhhccccCCC-CCceEEEecCCccccc
Q 005291 315 LDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (704)
Q Consensus 315 l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~~ 351 (704)
+..+|.||+||+||. ..|..+.|.+-++-.+
T Consensus 402 ------~aEtYLHRIGRsGRFGhlGlAInLityedrf~ 433 (459)
T KOG0326|consen 402 ------NAETYLHRIGRSGRFGHLGLAINLITYEDRFN 433 (459)
T ss_pred ------CHHHHHHHccCCccCCCcceEEEEEehhhhhh
Confidence 667888999999999 6899999987665443
No 46
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.97 E-value=4.8e-30 Score=291.14 Aligned_cols=298 Identities=22% Similarity=0.271 Sum_probs=222.1
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCC-----CCCcEEEEcchhhHHHHHHHHHHH---HHhCCc
Q 005291 7 LQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGY-----TKSGIIGVTQPRRVAAVSVARRVA---QELGVR 76 (704)
Q Consensus 7 ~~~~~~il~~l~~~~~vii~gpTGsGKT--t~l~~~l~~~~~-----~~~~~ilv~~P~r~la~~~a~rva---~~~~~~ 76 (704)
.+.|.++++.+.+|++++|+|||||||| .++|.+-..... ..+-.++++.|.|+|..++-+++. +++|..
T Consensus 24 t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~ 103 (814)
T COG1201 24 TPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIE 103 (814)
T ss_pred CHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCc
Confidence 4789999999999999999999999999 455544332222 123478999999999999998874 566666
Q ss_pred cCceeeeeeecccc--cCcccceEEcchHHHHHHHHhCC---CCCCCceEEEeCCCcCCCCHH---HHHHHHHHHHHHhc
Q 005291 77 LGEEVGYAIRFEDR--TSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNTD---ILLGLVKRLVNLRA 148 (704)
Q Consensus 77 vg~~vg~~~~~~~~--~~~~~~I~~~T~g~Ll~~l~~~~---~l~~~~~IIiDEaHer~l~~d---~l~~llk~l~~~~~ 148 (704)
+....|.....+.. .....+|+++||+.|.-.+.+.. .|.++.+|||||+|+ ..+++ .+.-.+.++....+
T Consensus 104 v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHe-l~~sKRG~~Lsl~LeRL~~l~~ 182 (814)
T COG1201 104 VAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHA-LAESKRGVQLALSLERLRELAG 182 (814)
T ss_pred cceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhh-hhccccchhhhhhHHHHHhhCc
Confidence 64444433222222 23457999999999976664432 789999999999997 22222 23333667777776
Q ss_pred cCcEEEEEecCC-ChHHHhcccCC----CCccccCC-CcCceeEEecCCCC---cchHHHHHHHHHHHHccCCCCCEEEE
Q 005291 149 SKLKILITSATL-DGEKVSKFFSN----CPTLNVPG-KLYPVEILHSKERP---TSYLESALKTAIDIHVREPEGDVLIF 219 (704)
Q Consensus 149 ~~~kiI~~SATl-~~~~~~~~~~~----~~~i~i~~-~~~pv~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~g~iLVF 219 (704)
+++.|++|||. +++.+++|+.+ |.++.+.+ +...+++....... ..........+.++..+. ..+|||
T Consensus 183 -~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~--~ttLIF 259 (814)
T COG1201 183 -DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKH--RTTLIF 259 (814)
T ss_pred -ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhhc--CcEEEE
Confidence 89999999999 67778999854 35565554 44445554332221 112233344444444332 389999
Q ss_pred eCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCC
Q 005291 220 MTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCG 299 (704)
Q Consensus 220 l~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g 299 (704)
+||+..++.++..|.+.. ...+..|||+++.++|..+.+.+++|+.|++|||+.+|-||||.+|+.||+.|
T Consensus 260 ~NTR~~aE~l~~~L~~~~---------~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~ 330 (814)
T COG1201 260 TNTRSGAERLAFRLKKLG---------PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLG 330 (814)
T ss_pred EeChHHHHHHHHHHHHhc---------CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeC
Confidence 999999999999998873 47789999999999999999999999999999999999999999999999855
Q ss_pred ccccccccCCCCccccccccccHHhHHhhccccCCC
Q 005291 300 YVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT 335 (704)
Q Consensus 300 ~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~ 335 (704)
.|-|.+.+.||+||+|+.
T Consensus 331 ------------------SP~sV~r~lQRiGRsgHr 348 (814)
T COG1201 331 ------------------SPKSVNRFLQRIGRAGHR 348 (814)
T ss_pred ------------------CcHHHHHHhHhccccccc
Confidence 367888999999999997
No 47
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.97 E-value=1.8e-30 Score=311.88 Aligned_cols=295 Identities=23% Similarity=0.233 Sum_probs=196.1
Q ss_pred EEcCCCCcHH--HHHHHHHHhcCC-----------CCCcEEEEcchhhHHHHHHHHHHHHH----------h-----CCc
Q 005291 25 VIGETGSGKS--TQLSQILHRHGY-----------TKSGIIGVTQPRRVAAVSVARRVAQE----------L-----GVR 76 (704)
Q Consensus 25 i~gpTGsGKT--t~l~~~l~~~~~-----------~~~~~ilv~~P~r~la~~~a~rva~~----------~-----~~~ 76 (704)
|++||||||| .++| ++..... ..+.+++++.|+|+|+.++.+++... + +..
T Consensus 1 V~APTGSGKTLAA~Lp-aL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~ 79 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLY-ALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLR 79 (1490)
T ss_pred CcCCCCcHHHHHHHHH-HHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceE
Confidence 5799999999 3333 3322211 12468999999999999999887431 1 122
Q ss_pred cCceeeeeeeccc--ccCcccceEEcchHHHHHHHHhC--CCCCCCceEEEeCCCcCCCCHH---HHHHHHHHHHHHhcc
Q 005291 77 LGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSN--PDLSPYSVIILDEAHERSLNTD---ILLGLVKRLVNLRAS 149 (704)
Q Consensus 77 vg~~vg~~~~~~~--~~~~~~~I~~~T~g~Ll~~l~~~--~~l~~~~~IIiDEaHer~l~~d---~l~~llk~l~~~~~~ 149 (704)
++...|.....+. ......+|+++||+.|..++.+. ..++++++|||||+|+ ..+.+ .+...+.++....+.
T Consensus 80 V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~-L~g~kRG~~Lel~LeRL~~l~~~ 158 (1490)
T PRK09751 80 VGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHA-VAGSKRGAHLALSLERLDALLHT 158 (1490)
T ss_pred EEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHH-hcccccccHHHHHHHHHHHhCCC
Confidence 2222221111111 11235799999999998776543 3689999999999995 44432 244456666666655
Q ss_pred CcEEEEEecCC-ChHHHhcccCCC-C--ccccCC-CcCceeEEecCCCCcc------------------hHHH-HHHHHH
Q 005291 150 KLKILITSATL-DGEKVSKFFSNC-P--TLNVPG-KLYPVEILHSKERPTS------------------YLES-ALKTAI 205 (704)
Q Consensus 150 ~~kiI~~SATl-~~~~~~~~~~~~-~--~i~i~~-~~~pv~~~~~~~~~~~------------------~~~~-~~~~~~ 205 (704)
+.|+|++|||+ |.+.+.+|++.. + ++..+. +..++++........+ .+.. ....++
T Consensus 159 ~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il 238 (1490)
T PRK09751 159 SAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGIL 238 (1490)
T ss_pred CCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHH
Confidence 79999999999 556788998643 2 222221 3334443321111000 0000 111222
Q ss_pred HHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcC----------------CC-------CCCCeEEEeccCCCCHHHH
Q 005291 206 DIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLD----------------EG-------SCMDAVILPLHGSLPPEMQ 262 (704)
Q Consensus 206 ~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~----------------~~-------~~~~~~v~~lh~~l~~~~r 262 (704)
... ...+++|||+||+..++.++..|.+...+.. .+ ......+..|||+|++++|
T Consensus 239 ~~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR 316 (1490)
T PRK09751 239 DEV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQR 316 (1490)
T ss_pred HHH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHH
Confidence 222 2357899999999999999999987532100 00 0012347789999999999
Q ss_pred hhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCCC--ceE
Q 005291 263 VRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRP--GKC 340 (704)
Q Consensus 263 ~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~--G~c 340 (704)
..+++.|++|+.++||||+.+|.||||++|++||+.|. |.|.++|+||+|||||... +++
T Consensus 317 ~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gs------------------P~sVas~LQRiGRAGR~~gg~s~g 378 (1490)
T PRK09751 317 AITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVAT------------------PLSVASGLQRIGRAGHQVGGVSKG 378 (1490)
T ss_pred HHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCC------------------CCCHHHHHHHhCCCCCCCCCccEE
Confidence 99999999999999999999999999999999998653 7789999999999999843 344
Q ss_pred E
Q 005291 341 Y 341 (704)
Q Consensus 341 ~ 341 (704)
+
T Consensus 379 l 379 (1490)
T PRK09751 379 L 379 (1490)
T ss_pred E
Confidence 4
No 48
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.4e-29 Score=265.63 Aligned_cols=316 Identities=21% Similarity=0.222 Sum_probs=221.2
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
+-...||..|......+ +++|+.|||=|||+.+...+.......+++++++.||+-|+.|.++.+.+.++.+..+.+..
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~l 92 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAAL 92 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeee
Confidence 44567888888877666 67888899999997766665533333344999999999999999999999999876554432
Q ss_pred --eeeccccc--CcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEec
Q 005291 84 --AIRFEDRT--SERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (704)
Q Consensus 84 --~~~~~~~~--~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SA 158 (704)
.++-+.+. -.+.+|+++||+.+.+-+.... .+.++++||+|||| |.......-.+.+..++... +..+++|||
T Consensus 93 tGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k-~~~ilgLTA 170 (542)
T COG1111 93 TGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAK-NPLILGLTA 170 (542)
T ss_pred cCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhcc-CceEEEEec
Confidence 22222211 1357899999999998886654 78999999999999 78776666666676766665 889999999
Q ss_pred CCC--hHHHhcccCCCCcc----ccCC----C--cCceeEEecCCC----------------------------------
Q 005291 159 TLD--GEKVSKFFSNCPTL----NVPG----K--LYPVEILHSKER---------------------------------- 192 (704)
Q Consensus 159 Tl~--~~~~~~~~~~~~~i----~i~~----~--~~pv~~~~~~~~---------------------------------- 192 (704)
|+. .+.+.+...+-.+- ..+. + ...+++.+.+..
T Consensus 171 SPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~ 250 (542)
T COG1111 171 SPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSP 250 (542)
T ss_pred CCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCc
Confidence 993 44455444321110 0000 0 001111111000
Q ss_pred --------------------C-------------------------------cchHH-----------------------
Q 005291 193 --------------------P-------------------------------TSYLE----------------------- 198 (704)
Q Consensus 193 --------------------~-------------------------------~~~~~----------------------- 198 (704)
. ..|+.
T Consensus 251 ~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~ 330 (542)
T COG1111 251 VSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYF 330 (542)
T ss_pred ccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhh
Confidence 0 00000
Q ss_pred -HH--------------------HHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEe-----
Q 005291 199 -SA--------------------LKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILP----- 252 (704)
Q Consensus 199 -~~--------------------~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~----- 252 (704)
.+ .+.+.+.....+..+++||.+-++.++.+.++|.+... ...+.+
T Consensus 331 ~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~--------~~~~rFiGQa~ 402 (542)
T COG1111 331 KRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGI--------KARVRFIGQAS 402 (542)
T ss_pred HHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCC--------cceeEEeeccc
Confidence 00 00111111233456899999999999999999987631 222111
Q ss_pred --ccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhcc
Q 005291 253 --LHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVG 330 (704)
Q Consensus 253 --lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~G 330 (704)
...||++.+|.++++.|++|..+|||||+++|.|+|||+++.||- |+|. -|..-++||.|
T Consensus 403 r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif--------YEpv----------pSeIR~IQR~G 464 (542)
T COG1111 403 REGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF--------YEPV----------PSEIRSIQRKG 464 (542)
T ss_pred cccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE--------ecCC----------cHHHHHHHhhC
Confidence 235899999999999999999999999999999999999999996 5553 26777889999
Q ss_pred ccCCCCCceEEEecCCcc
Q 005291 331 RAGRTRPGKCYRLYPSTV 348 (704)
Q Consensus 331 RaGR~~~G~c~~L~~~~~ 348 (704)
|+||.++|..|.|.++..
T Consensus 465 RTGR~r~Grv~vLvt~gt 482 (542)
T COG1111 465 RTGRKRKGRVVVLVTEGT 482 (542)
T ss_pred ccccCCCCeEEEEEecCc
Confidence 999999999999998873
No 49
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=1.5e-29 Score=296.74 Aligned_cols=299 Identities=18% Similarity=0.201 Sum_probs=205.8
Q ss_pred chHHHHHHHHHhccC------CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCC---c
Q 005291 6 ILQYEETIVETVEQN------PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV---R 76 (704)
Q Consensus 6 i~~~~~~il~~l~~~------~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~---~ 76 (704)
..+.|.+.++.+.++ .+.+++||||||||..+...+.... ..+.+++++.||++||.|+++.+.+.+.. .
T Consensus 452 ~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al-~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~ 530 (926)
T TIGR00580 452 ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAV-LDGKQVAVLVPTTLLAQQHFETFKERFANFPVT 530 (926)
T ss_pred CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHH-HhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcE
Confidence 467888888888764 6789999999999943322222211 23578999999999999999998776542 2
Q ss_pred cCceeeeeeeccc------ccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccC
Q 005291 77 LGEEVGYAIRFED------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (704)
Q Consensus 77 vg~~vg~~~~~~~------~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~ 150 (704)
++...|.....+. ......+|+++|+..+ ..+..+.++++|||||+|. +.... +..+...+.+
T Consensus 531 v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~~v~f~~L~llVIDEahr--fgv~~-----~~~L~~~~~~ 599 (926)
T TIGR00580 531 IELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QKDVKFKDLGLLIIDEEQR--FGVKQ-----KEKLKELRTS 599 (926)
T ss_pred EEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hCCCCcccCCEEEeecccc--cchhH-----HHHHHhcCCC
Confidence 2222221110010 0123578999999533 3445688999999999994 22221 2222233347
Q ss_pred cEEEEEecCCChHHHhccc-C--CCCccccC-CCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHH
Q 005291 151 LKILITSATLDGEKVSKFF-S--NCPTLNVP-GKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDI 226 (704)
Q Consensus 151 ~kiI~~SATl~~~~~~~~~-~--~~~~i~i~-~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i 226 (704)
.++++||||+.+..+...+ + +..++..+ ....|+..++..... ..+ ...+.... ..+++++||||+.+++
T Consensus 600 ~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~-~~i---~~~i~~el--~~g~qv~if~n~i~~~ 673 (926)
T TIGR00580 600 VDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDP-ELV---REAIRREL--LRGGQVFYVHNRIESI 673 (926)
T ss_pred CCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCH-HHH---HHHHHHHH--HcCCeEEEEECCcHHH
Confidence 8999999998766543322 1 23333332 234567665543221 111 11121111 2468999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccc
Q 005291 227 EKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY 306 (704)
Q Consensus 227 ~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~ 306 (704)
+.+++.|++.. ++..+..+||+|+.++|.++++.|.+|+.+|||||+++|+|||+|++++||..+
T Consensus 674 e~l~~~L~~~~--------p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~------- 738 (926)
T TIGR00580 674 EKLATQLRELV--------PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIER------- 738 (926)
T ss_pred HHHHHHHHHhC--------CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEec-------
Confidence 99999998763 478899999999999999999999999999999999999999999999999622
Q ss_pred cCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCc
Q 005291 307 NPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (704)
Q Consensus 307 ~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~ 347 (704)
+. ..+.+++.||+||+||. +.|.||.+++..
T Consensus 739 -a~---------~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 739 -AD---------KFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred -CC---------CCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 21 12345788999999998 689999998664
No 50
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=1.3e-29 Score=274.74 Aligned_cols=290 Identities=19% Similarity=0.192 Sum_probs=186.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC-CCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeee------ec-----cc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAI------RF-----ED 89 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~~-~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~------~~-----~~ 89 (704)
+++|.||||||||+....++.... ...+.+++++.|+++++.|+++++...++..++...|... .. +.
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 378999999999966555544332 2345699999999999999999998887754443222110 00 00
Q ss_pred ---------ccCcccceEEcchHHHHHHHHhCC-------CCCCCceEEEeCCCcCCCCHH--HHHHHHHHHHHHhccCc
Q 005291 90 ---------RTSERTLIKYLTDGVLLREILSNP-------DLSPYSVIILDEAHERSLNTD--ILLGLVKRLVNLRASKL 151 (704)
Q Consensus 90 ---------~~~~~~~I~~~T~g~Ll~~l~~~~-------~l~~~~~IIiDEaHer~l~~d--~l~~llk~l~~~~~~~~ 151 (704)
.......|+++|++.++..+.... .....++|||||+|. ..+.. ++..+++.+. ..+.
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~-~~~~~~~~l~~~l~~l~---~~~~ 156 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHF-YDEYTLALILAVLEVLK---DNDV 156 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCC-CCHHHHHHHHHHHHHHH---HcCC
Confidence 001235799999999988776521 111238999999994 43322 2333233222 2378
Q ss_pred EEEEEecCCChHHHhcccCCCCccccCCCcCcee-------EEe-cCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCH
Q 005291 152 KILITSATLDGEKVSKFFSNCPTLNVPGKLYPVE-------ILH-SKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQ 223 (704)
Q Consensus 152 kiI~~SATl~~~~~~~~~~~~~~i~i~~~~~pv~-------~~~-~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 223 (704)
++++||||++ +.+.+++.......... .++.. ..+ ............+..++... ..++++||||+++
T Consensus 157 ~~i~~SATlp-~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lVf~~t~ 232 (358)
T TIGR01587 157 PILLMSATLP-KFLKEYAEKIGYVEFNE-PLDLKEERRFERHRFIKIESDKVGEISSLERLLEFI--KKGGKIAIIVNTV 232 (358)
T ss_pred CEEEEecCch-HHHHHHHhcCCCccccc-CCCCccccccccccceeeccccccCHHHHHHHHHHh--hCCCeEEEEECCH
Confidence 9999999997 44566554322111110 01100 000 00000001111222222222 3467999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhh----ccCCCCCCCcEEEEEcccccccccCCCeEEEEeCC
Q 005291 224 DDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVR----VFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCG 299 (704)
Q Consensus 224 ~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~----v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g 299 (704)
++++.+++.|.+.. ....+..+||++++.+|.+ +++.|++|..+|||||+++++|+||| +++||..
T Consensus 233 ~~~~~~~~~L~~~~--------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~- 302 (358)
T TIGR01587 233 DRAQEFYQQLKENA--------PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITE- 302 (358)
T ss_pred HHHHHHHHHHHhhc--------CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEc-
Confidence 99999999998762 2457999999999999876 48889999999999999999999997 6677751
Q ss_pred ccccccccCCCCccccccccccHHhHHhhccccCCCC--C---ceEEEecCCcc
Q 005291 300 YVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR--P---GKCYRLYPSTV 348 (704)
Q Consensus 300 ~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~--~---G~c~~L~~~~~ 348 (704)
+.+..+++||+||+||.+ . |.+|.++...+
T Consensus 303 -------------------~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 303 -------------------LAPIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred -------------------CCCHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 234568899999999973 2 37777775544
No 51
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.2e-30 Score=257.80 Aligned_cols=315 Identities=19% Similarity=0.211 Sum_probs=237.6
Q ss_pred HHHHHHHHHhc--cCCEEEEEcCCCCcHH-HHHHHHHHhcCCC-CCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 8 QYEETIVETVE--QNPVVVVIGETGSGKS-TQLSQILHRHGYT-KSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 8 ~~~~~il~~l~--~~~~vii~gpTGsGKT-t~l~~~l~~~~~~-~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
..|+..+..+. ..+++|..+.+|+||| .++..+|...... .....+|+.|+|++|.|.-+-+ +++|-..+....|
T Consensus 115 kIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv-~eMGKf~~ita~y 193 (477)
T KOG0332|consen 115 KIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVV-EEMGKFTELTASY 193 (477)
T ss_pred hHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHH-HHhcCceeeeEEE
Confidence 45556666554 4578999999999999 4555555544332 2336788899999999988765 7788766778888
Q ss_pred eeecccccC---cccceEEcchHHHHHHHHh--CCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEec
Q 005291 84 AIRFEDRTS---ERTLIKYLTDGVLLREILS--NPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (704)
Q Consensus 84 ~~~~~~~~~---~~~~I~~~T~g~Ll~~l~~--~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SA 158 (704)
.++...... -..+|++.|||.++.++.. .-.+..+.++|+|||+ .++++..+...--.+....|++.+++++||
T Consensus 194 air~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD-~Mi~tqG~~D~S~rI~~~lP~~~QllLFSA 272 (477)
T KOG0332|consen 194 AIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEAD-VMIDTQGFQDQSIRIMRSLPRNQQLLLFSA 272 (477)
T ss_pred EecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchh-hhhhcccccccchhhhhhcCCcceEEeeec
Confidence 888763332 2468999999999998855 3478889999999999 677777555555566666667999999999
Q ss_pred CCChHH--H-hcccCCCCccccCC---CcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHH
Q 005291 159 TLDGEK--V-SKFFSNCPTLNVPG---KLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (704)
Q Consensus 159 Tl~~~~--~-~~~~~~~~~i~i~~---~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~ 232 (704)
|..... | .....++.++.+.. ..+++..+|......+ .....+..+.-.-.-|+.+|||.++..+.+++..
T Consensus 273 Tf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~---~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~ 349 (477)
T KOG0332|consen 273 TFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRD---DKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEE 349 (477)
T ss_pred hhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchh---hHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHH
Confidence 996433 3 34556666665554 3455666665444332 2333444444444568999999999999999999
Q ss_pred HHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCc
Q 005291 233 LEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGM 312 (704)
Q Consensus 233 L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~ 312 (704)
+.+. +..|..+||.|..++|..+.+.|++|.-||+|+||+.++|||++.|++|||++++-. |
T Consensus 350 m~~~----------Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~--~------ 411 (477)
T KOG0332|consen 350 MRAE----------GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVK--Y------ 411 (477)
T ss_pred HHhc----------CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccc--c------
Confidence 9875 899999999999999999999999999999999999999999999999999665321 1
Q ss_pred cccccccccHHhHHhhccccCCC-CCceEEEecCCccc
Q 005291 313 YSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (704)
Q Consensus 313 ~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~ 349 (704)
...-.+..|.||+||+||. +.|..+.|.....-
T Consensus 412 ----~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s 445 (477)
T KOG0332|consen 412 ----TGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDS 445 (477)
T ss_pred ----CCCCCHHHHHHHhcccccccccceEEEeecccCc
Confidence 1224788999999999999 67999998755433
No 52
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=6.7e-30 Score=267.13 Aligned_cols=343 Identities=21% Similarity=0.229 Sum_probs=235.2
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhc-CC------CCCcEEEEcchhhHHHHHHHHHHHHHhCCccC
Q 005291 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH-GY------TKSGIIGVTQPRRVAAVSVARRVAQELGVRLG 78 (704)
Q Consensus 7 ~~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~-~~------~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg 78 (704)
...|++.+..+.+|++++|-++|||||| .++.+++... .. ..|...+|++|||+||.|+++.+.+.......
T Consensus 161 TsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hW 240 (708)
T KOG0348|consen 161 TSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHW 240 (708)
T ss_pred chHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceE
Confidence 4678888999999999999999999999 3333333322 11 23557899999999999999999887776544
Q ss_pred ceeeeeeecccccC------cccceEEcchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCCHHHHHH---HHHHHH---
Q 005291 79 EEVGYAIRFEDRTS------ERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLG---LVKRLV--- 144 (704)
Q Consensus 79 ~~vg~~~~~~~~~~------~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~l~~d~l~~---llk~l~--- 144 (704)
..-|+-+..+.+.+ .+.+|++.|||+|+..+.+-. .++++..||+||++ |.++.+|-.. +++.+-
T Consensus 241 IVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaD-rlleLGfekdit~Il~~v~~~~ 319 (708)
T KOG0348|consen 241 IVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEAD-RLLELGFEKDITQILKAVHSIQ 319 (708)
T ss_pred EeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchh-HHHhccchhhHHHHHHHHhhcc
Confidence 44555566666654 357899999999999997654 57889999999999 7877766333 233331
Q ss_pred H-Hhc-----cCcEEEEEecCCChH--HHhccc-CCCCccccC------------------C-CcCc---------eeEE
Q 005291 145 N-LRA-----SKLKILITSATLDGE--KVSKFF-SNCPTLNVP------------------G-KLYP---------VEIL 187 (704)
Q Consensus 145 ~-~~~-----~~~kiI~~SATl~~~--~~~~~~-~~~~~i~i~------------------~-~~~p---------v~~~ 187 (704)
. ... ...+-+++|||+... .+++.- .++..+..+ + ...+ +...
T Consensus 320 ~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qr 399 (708)
T KOG0348|consen 320 NAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQR 399 (708)
T ss_pred chhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhc
Confidence 1 111 136778999999543 243321 222222211 0 0000 1112
Q ss_pred ecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCC------------CCCCCeEEEeccC
Q 005291 188 HSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDE------------GSCMDAVILPLHG 255 (704)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~------------~~~~~~~v~~lh~ 255 (704)
|...++.-.+......+.+....++..+++||+.+.+.++.=++.+......... ....+..++-|||
T Consensus 400 y~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHG 479 (708)
T KOG0348|consen 400 YTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHG 479 (708)
T ss_pred eEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecC
Confidence 2222333333444445555555666678999999999999999888776543100 0123567999999
Q ss_pred CCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC
Q 005291 256 SLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT 335 (704)
Q Consensus 256 ~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~ 335 (704)
+|++++|..+|+.|.....-|++|||+|++|+|+|+|+.||. ||+ |.|.++|+||+||+.|.
T Consensus 480 sm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ--------Yd~----------P~s~adylHRvGRTARa 541 (708)
T KOG0348|consen 480 SMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ--------YDP----------PFSTADYLHRVGRTARA 541 (708)
T ss_pred chhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE--------eCC----------CCCHHHHHHHhhhhhhc
Confidence 999999999999999999999999999999999999999997 554 77999999999999998
Q ss_pred -CCceEE--EecCCccccccCCCCCCCccccCChHHH
Q 005291 336 -RPGKCY--RLYPSTVYHDEFLDVTVPEIQRSSLAGS 369 (704)
Q Consensus 336 -~~G~c~--~L~~~~~~~~~~~~~~~pei~r~~l~~~ 369 (704)
..|... .+-++.+|.+ ......+-++.-++..+
T Consensus 542 G~kG~alLfL~P~Eaey~~-~l~~~~~~l~q~~~~~~ 577 (708)
T KOG0348|consen 542 GEKGEALLFLLPSEAEYVN-YLKKHHIMLLQFDMEIL 577 (708)
T ss_pred cCCCceEEEecccHHHHHH-HHHhhcchhhccchhhh
Confidence 456554 4445666665 33333333444444443
No 53
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.97 E-value=2.4e-29 Score=291.43 Aligned_cols=298 Identities=16% Similarity=0.196 Sum_probs=203.1
Q ss_pred CchHHHHHHHHHhccC------CEEEEEcCCCCcHHH-HHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHh---C
Q 005291 5 PILQYEETIVETVEQN------PVVVVIGETGSGKST-QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL---G 74 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~------~~vii~gpTGsGKTt-~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~---~ 74 (704)
.....|++.++.+..+ .+.+++||||||||. ++..++... ..+.+++++.||++||.|+++.+.+.+ +
T Consensus 261 ~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~--~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~ 338 (681)
T PRK10917 261 ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAI--EAGYQAALMAPTEILAEQHYENLKKLLEPLG 338 (681)
T ss_pred CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 3678999999988776 378999999999993 333333222 246789999999999999999987655 3
Q ss_pred CccCceeeeeeecc------cccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc
Q 005291 75 VRLGEEVGYAIRFE------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (704)
Q Consensus 75 ~~vg~~vg~~~~~~------~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~ 148 (704)
..++...|.....+ .......+|+++|++.+.. ...+.++++|||||+|. . ..... ..+... .
T Consensus 339 i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hr-f-g~~qr----~~l~~~-~ 407 (681)
T PRK10917 339 IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQHR-F-GVEQR----LALREK-G 407 (681)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechhh-h-hHHHH----HHHHhc-C
Confidence 44444444211000 1122358999999987643 23578899999999994 2 22211 122222 2
Q ss_pred cCcEEEEEecCCChHHHh-cccCCCCccc---cCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHH
Q 005291 149 SKLKILITSATLDGEKVS-KFFSNCPTLN---VPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (704)
Q Consensus 149 ~~~kiI~~SATl~~~~~~-~~~~~~~~i~---i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ 224 (704)
...++++||||+.+..+. .++++..+.. .+....|+...+..... ....++.+.... ..+++++||||..+
T Consensus 408 ~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~---~~~~~~~i~~~~--~~g~q~~v~~~~ie 482 (681)
T PRK10917 408 ENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSR---RDEVYERIREEI--AKGRQAYVVCPLIE 482 (681)
T ss_pred CCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCccc---HHHHHHHHHHHH--HcCCcEEEEEcccc
Confidence 368899999998665533 2333322222 23333466665544322 222233332222 34679999999654
Q ss_pred H--------HHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEE
Q 005291 225 D--------IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVI 296 (704)
Q Consensus 225 ~--------i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VI 296 (704)
+ ++.+++.|.+.+ +++.+..+||+|+.++|.++++.|++|+.+|||||+++|+|||+|++++||
T Consensus 483 ~s~~l~~~~~~~~~~~L~~~~--------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VI 554 (681)
T PRK10917 483 ESEKLDLQSAEETYEELQEAF--------PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMV 554 (681)
T ss_pred cccchhHHHHHHHHHHHHHHC--------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEE
Confidence 3 445566665542 357899999999999999999999999999999999999999999999999
Q ss_pred eCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecC
Q 005291 297 DCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYP 345 (704)
Q Consensus 297 d~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~ 345 (704)
..+ +.. .+.+++.||+||+||. .+|.||.+++
T Consensus 555 i~~--------~~r---------~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 555 IEN--------AER---------FGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred EeC--------CCC---------CCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 733 221 2346788999999998 6899999985
No 54
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.97 E-value=9.8e-30 Score=304.47 Aligned_cols=299 Identities=17% Similarity=0.182 Sum_probs=205.5
Q ss_pred chHHHHHHHHHhccC------CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCC---c
Q 005291 6 ILQYEETIVETVEQN------PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV---R 76 (704)
Q Consensus 6 i~~~~~~il~~l~~~------~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~---~ 76 (704)
..+.|.+.++.+..+ .+++++|+||+|||..+...+... ...+.+++++.|+++||.|+++.+.+.++. .
T Consensus 601 ~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~-~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~ 679 (1147)
T PRK10689 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA-VENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 679 (1147)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCce
Confidence 567888888888876 789999999999994432222211 124678999999999999999998775542 2
Q ss_pred cCceeeeeeecccc------cCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccC
Q 005291 77 LGEEVGYAIRFEDR------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (704)
Q Consensus 77 vg~~vg~~~~~~~~------~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~ 150 (704)
+....|.....+.. .....+|+|+|++.+ ..+..+.++++|||||+|.. .... ...+ ...+.+
T Consensus 680 i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~~v~~~~L~lLVIDEahrf--G~~~----~e~l-k~l~~~ 748 (1147)
T PRK10689 680 IEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QSDVKWKDLGLLIVDEEHRF--GVRH----KERI-KAMRAD 748 (1147)
T ss_pred EEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hCCCCHhhCCEEEEechhhc--chhH----HHHH-HhcCCC
Confidence 22222211111111 113578999999754 23445788999999999942 2221 2222 333448
Q ss_pred cEEEEEecCCChHHHh---cccCCCCccccCC-CcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHH
Q 005291 151 LKILITSATLDGEKVS---KFFSNCPTLNVPG-KLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDI 226 (704)
Q Consensus 151 ~kiI~~SATl~~~~~~---~~~~~~~~i~i~~-~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i 226 (704)
.++++||||+.+..+. ..+.+..++..+. ...++..+...... ... ...++... ..+|+++||+|+++.+
T Consensus 749 ~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~-~~~---k~~il~el--~r~gqv~vf~n~i~~i 822 (1147)
T PRK10689 749 VDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDS-LVV---REAILREI--LRGGQVYYLYNDVENI 822 (1147)
T ss_pred CcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCc-HHH---HHHHHHHH--hcCCeEEEEECCHHHH
Confidence 9999999998665432 2333444454433 23455554432111 111 11122111 2357999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccc
Q 005291 227 EKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY 306 (704)
Q Consensus 227 ~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~ 306 (704)
+.+++.|.+.. ++..+..+||+|+.++|.+++..|++|+.+|||||+++++|||+|++++||. +
T Consensus 823 e~la~~L~~~~--------p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi--------~ 886 (1147)
T PRK10689 823 QKAAERLAELV--------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII--------E 886 (1147)
T ss_pred HHHHHHHHHhC--------CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE--------e
Confidence 99999998763 4678889999999999999999999999999999999999999999999993 1
Q ss_pred cCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCc
Q 005291 307 NPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (704)
Q Consensus 307 ~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~ 347 (704)
++. ..+.+++.||+||+||. ..|.||.+++..
T Consensus 887 ~ad---------~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 887 RAD---------HFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred cCC---------CCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 111 11335689999999998 689999888653
No 55
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.97 E-value=2.3e-29 Score=289.76 Aligned_cols=301 Identities=15% Similarity=0.173 Sum_probs=200.5
Q ss_pred chHHHHHHHHHhccC------CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhC---Cc
Q 005291 6 ILQYEETIVETVEQN------PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG---VR 76 (704)
Q Consensus 6 i~~~~~~il~~l~~~------~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~---~~ 76 (704)
.+..|+++++.+..+ .+.+++||||||||......+... ...+.+++++.|+++||.|+++.+.+.++ ..
T Consensus 236 lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~-~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~ 314 (630)
T TIGR00643 236 LTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAA-IEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIE 314 (630)
T ss_pred CCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHH-HHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcE
Confidence 678898888888765 257999999999994432222221 12466899999999999999998876653 44
Q ss_pred cCceeeeeeec------ccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccC
Q 005291 77 LGEEVGYAIRF------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (704)
Q Consensus 77 vg~~vg~~~~~------~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~ 150 (704)
+....|..... +.......+|+++|++.+.. ...+.++++|||||+|.. ..+....+... .... ..
T Consensus 315 v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~f--g~~qr~~l~~~-~~~~-~~ 386 (630)
T TIGR00643 315 VALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHRF--GVEQRKKLREK-GQGG-FT 386 (630)
T ss_pred EEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechhhc--cHHHHHHHHHh-cccC-CC
Confidence 43333311110 11122356999999987643 335788999999999942 22222221111 1111 15
Q ss_pred cEEEEEecCCChHHHh-cccCCCC---ccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHH--
Q 005291 151 LKILITSATLDGEKVS-KFFSNCP---TLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD-- 224 (704)
Q Consensus 151 ~kiI~~SATl~~~~~~-~~~~~~~---~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~-- 224 (704)
.++++||||+.+..+. ..+++.. +-..+....|+...+..... .......+.... ..+++++||||..+
T Consensus 387 ~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~---~~~~~~~i~~~l--~~g~q~~v~~~~i~~s 461 (630)
T TIGR00643 387 PHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDE---KDIVYEFIEEEI--AKGRQAYVVYPLIEES 461 (630)
T ss_pred CCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcch---HHHHHHHHHHHH--HhCCcEEEEEcccccc
Confidence 7899999998655433 2222211 12233334566665543322 122222222211 24578999999764
Q ss_pred ------HHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeC
Q 005291 225 ------DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDC 298 (704)
Q Consensus 225 ------~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~ 298 (704)
.++.+++.|.+.+ +++.+..+||+|++++|.++++.|++|+.+|||||+++|+|||+|++++||..
T Consensus 462 ~~~~~~~a~~~~~~L~~~~--------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~ 533 (630)
T TIGR00643 462 EKLDLKAAEALYERLKKAF--------PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIE 533 (630)
T ss_pred ccchHHHHHHHHHHHHhhC--------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEe
Confidence 4455566665442 47789999999999999999999999999999999999999999999999973
Q ss_pred CccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecC
Q 005291 299 GYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYP 345 (704)
Q Consensus 299 g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~ 345 (704)
+ +.. .+.+++.||+||+||. .+|.||.++.
T Consensus 534 ~--------~~r---------~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 534 D--------AER---------FGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred C--------CCc---------CCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 3 221 2456789999999998 6899999983
No 56
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.97 E-value=1.9e-29 Score=287.90 Aligned_cols=333 Identities=17% Similarity=0.159 Sum_probs=202.2
Q ss_pred CchHHHHHHHHHhccCC-EEEEEcCCCCcHHHHHHHHHHhcCCC--CCcEEEEcchhhHHHHHHHHHHHHHhC-------
Q 005291 5 PILQYEETIVETVEQNP-VVVVIGETGSGKSTQLSQILHRHGYT--KSGIIGVTQPRRVAAVSVARRVAQELG------- 74 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~-~vii~gpTGsGKTt~l~~~l~~~~~~--~~~~ilv~~P~r~la~~~a~rva~~~~------- 74 (704)
.-+++|.++++.+..|+ .+++.+|||||||..+..+++..... ...++++++|+|+++.|+++.+.+...
T Consensus 15 ~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~ 94 (844)
T TIGR02621 15 SPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPE 94 (844)
T ss_pred CCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcccch
Confidence 35789999999999998 67778999999996444344322211 123677789999999999887643221
Q ss_pred -------------------CccCceeeeeeeccc---ccCcccceEEcchHHHHHHHHhC-------------CCCCCCc
Q 005291 75 -------------------VRLGEEVGYAIRFED---RTSERTLIKYLTDGVLLREILSN-------------PDLSPYS 119 (704)
Q Consensus 75 -------------------~~vg~~vg~~~~~~~---~~~~~~~I~~~T~g~Ll~~l~~~-------------~~l~~~~ 119 (704)
+.+...+|. ...+. ......+|+++|..++.+..+.. ..+.+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~v~~l~GG-~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~ 173 (844)
T TIGR02621 95 VEAALWALCSTRPEKKDRPLAISTLRGQ-FADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDA 173 (844)
T ss_pred hhhhhhhhhccccccccCCeEEEEEECC-CChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccce
Confidence 112222231 11111 12245789999976665444311 1378899
Q ss_pred eEEEeCCCcCCCCHHHHHHHHHHHHHH--hcc---CcEEEEEecCCChHH--Hh-cccCCCCccccCCCcCce-e-EEec
Q 005291 120 VIILDEAHERSLNTDILLGLVKRLVNL--RAS---KLKILITSATLDGEK--VS-KFFSNCPTLNVPGKLYPV-E-ILHS 189 (704)
Q Consensus 120 ~IIiDEaHer~l~~d~l~~llk~l~~~--~~~---~~kiI~~SATl~~~~--~~-~~~~~~~~i~i~~~~~pv-~-~~~~ 189 (704)
+||||||| ++..|.. .++.++.. ++. +.|+++||||++.+. +. .+..+...+.+..+.... . ..|.
T Consensus 174 ~LVLDEAD---Ld~gF~~-~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v 249 (844)
T TIGR02621 174 LIVHDEAH---LEPAFQE-LLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLV 249 (844)
T ss_pred EEEEehhh---hccccHH-HHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEEE
Confidence 99999999 3444433 34445443 122 269999999997542 22 233232222332221111 1 1122
Q ss_pred CCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHh-----h
Q 005291 190 KERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQV-----R 264 (704)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~-----~ 264 (704)
.......+...+..+.... ...++++||||||+++++.+++.|.+. ++ ..+||+|++.+|. +
T Consensus 250 ~v~~e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~----------g~--~lLHG~m~q~dR~~~~~~~ 316 (844)
T TIGR02621 250 PPSDEKFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKVFAKLPKE----------KF--ELLTGTLRGAERDDLVKKE 316 (844)
T ss_pred ecChHHHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHHHHHHHhc----------CC--eEeeCCCCHHHHhhHHHHH
Confidence 2222222222333332222 345689999999999999999999764 33 7899999999999 7
Q ss_pred ccCCCCC----CC-------cEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccC
Q 005291 265 VFSPPPP----NC-------RRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAG 333 (704)
Q Consensus 265 v~~~~~~----g~-------~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaG 333 (704)
+++.|++ |. .+|||||+++|+||||+. ++||+ +. .+..+|+||+||+|
T Consensus 317 il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~---------------d~-----aP~esyIQRiGRtg 375 (844)
T TIGR02621 317 IFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVC---------------DL-----APFESMQQRFGRVN 375 (844)
T ss_pred HHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEE---------------CC-----CCHHHHHHHhcccC
Confidence 7787876 43 689999999999999997 66664 11 13478999999999
Q ss_pred CCCC--ceEEEecCCcccccc-CCCCCCCccccCChHHHHHhhcccC
Q 005291 334 RTRP--GKCYRLYPSTVYHDE-FLDVTVPEIQRSSLAGSVLYLKSLD 377 (704)
Q Consensus 334 R~~~--G~c~~L~~~~~~~~~-~~~~~~pei~r~~l~~~~L~l~~l~ 377 (704)
|.+. |..+.+++.+ +... -...--|++.+..+..+.+.....|
T Consensus 376 R~G~~~~~~i~vv~~~-~~~~~~~~vY~~~~l~~t~~~L~~~~~~~~ 421 (844)
T TIGR02621 376 RFGELQACQIAVVHLD-LGKDQDFDVYGKKIDKSTWSTLKKLQQLKG 421 (844)
T ss_pred CCCCCCCceEEEEeec-cCCCcccCCCCHHHHHHHHHHHHHHHhccc
Confidence 9843 2223333221 1110 1111236777766655554444444
No 57
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.7e-29 Score=277.07 Aligned_cols=303 Identities=19% Similarity=0.162 Sum_probs=214.1
Q ss_pred HHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeee
Q 005291 9 YEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIR 86 (704)
Q Consensus 9 ~~~~il~~l~~~~~vii~gpTGsGKT--t~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~ 86 (704)
-|.++++.+.++++++++.|||+||| .|+|.++. .|.++|+.|..+|..++...+. ..|......-+....
T Consensus 21 gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~l~-~~Gi~A~~lnS~l~~ 93 (590)
T COG0514 21 GQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQLE-AAGIRAAYLNSTLSR 93 (590)
T ss_pred CHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHHHH-HcCceeehhhcccCH
Confidence 47899999999999999999999999 88888776 4588999999999988887763 334322111110011
Q ss_pred ccc------ccCcccceEEcchHHHHHHHHhC-CCCCCCceEEEeCCCcCCCC-HHHHHHH--HHHHHHHhccCcEEEEE
Q 005291 87 FED------RTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLN-TDILLGL--VKRLVNLRASKLKILIT 156 (704)
Q Consensus 87 ~~~------~~~~~~~I~~~T~g~Ll~~l~~~-~~l~~~~~IIiDEaHer~l~-~d~l~~l--lk~l~~~~~~~~kiI~~ 156 (704)
.+. ......+++|.+|++|..--..+ -.-..+++++|||||+-+-. -||...+ +..+....+ +++++.+
T Consensus 94 ~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~-~~p~~Al 172 (590)
T COG0514 94 EERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP-NPPVLAL 172 (590)
T ss_pred HHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCC-CCCEEEE
Confidence 111 11234689999999875432111 12456899999999984433 3443332 344555555 8899999
Q ss_pred ecCCChHH---HhcccC-CCCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHH
Q 005291 157 SATLDGEK---VSKFFS-NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (704)
Q Consensus 157 SATl~~~~---~~~~~~-~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~ 232 (704)
|||.+... +.+.++ +.+.+.+.+-.. ..++|.-....+..... ..+.. ......+..+|||.|++.++.+++.
T Consensus 173 TATA~~~v~~DI~~~L~l~~~~~~~~sfdR-pNi~~~v~~~~~~~~q~-~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~ 249 (590)
T COG0514 173 TATATPRVRDDIREQLGLQDANIFRGSFDR-PNLALKVVEKGEPSDQL-AFLAT-VLPQLSKSGIIYCLTRKKVEELAEW 249 (590)
T ss_pred eCCCChHHHHHHHHHhcCCCcceEEecCCC-chhhhhhhhcccHHHHH-HHHHh-hccccCCCeEEEEeeHHhHHHHHHH
Confidence 99998754 333332 222221111111 12222221111111111 12222 2345567789999999999999999
Q ss_pred HHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCc
Q 005291 233 LEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGM 312 (704)
Q Consensus 233 L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~ 312 (704)
|.+. ++.+.++||+|+.++|..+.+.|.++..+|||||+..++|||.|||++||+.++
T Consensus 250 L~~~----------g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~l------------ 307 (590)
T COG0514 250 LRKN----------GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDL------------ 307 (590)
T ss_pred HHHC----------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecC------------
Confidence 9875 889999999999999999999999999999999999999999999999999665
Q ss_pred cccccccccHHhHHhhccccCCC-CCceEEEecCCcccc
Q 005291 313 YSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (704)
Q Consensus 313 ~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~ 350 (704)
|-|..+|.|-+|||||. .|..|+.||+..+..
T Consensus 308 ------P~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 308 ------PGSIESYYQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred ------CCCHHHHHHHHhhccCCCCcceEEEeeccccHH
Confidence 66889999999999999 789999999988764
No 58
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=7.4e-30 Score=270.31 Aligned_cols=305 Identities=18% Similarity=0.168 Sum_probs=214.4
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCCC-----------CCcEEEEcchhhHHHHHHHHHHHHHhCC
Q 005291 8 QYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYT-----------KSGIIGVTQPRRVAAVSVARRVAQELGV 75 (704)
Q Consensus 8 ~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~~~~-----------~~~~ilv~~P~r~la~~~a~rva~~~~~ 75 (704)
++|+--+..+..|+.++++|+|||||| .++.+++...... ....++++.|||+|+.|++.+..+..+.
T Consensus 99 pvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~ 178 (482)
T KOG0335|consen 99 PVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYL 178 (482)
T ss_pred cceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhccc
Confidence 345556778889999999999999999 4444444432111 1247899999999999999987766543
Q ss_pred ccC-ceeeeeee----cccccCcccceEEcchHHHHHHHHh-CCCCCCCceEEEeCCCcCCCC-HHHHHHHHHHHHHHhc
Q 005291 76 RLG-EEVGYAIR----FEDRTSERTLIKYLTDGVLLREILS-NPDLSPYSVIILDEAHERSLN-TDILLGLVKRLVNLRA 148 (704)
Q Consensus 76 ~vg-~~vg~~~~----~~~~~~~~~~I~~~T~g~Ll~~l~~-~~~l~~~~~IIiDEaHer~l~-~d~l~~llk~l~~~~~ 148 (704)
..- ..+.|.-+ ........++|+++|+|.|...+.. ...|.++.++|||||+ |++| ..|... +++++....
T Consensus 179 s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEAD-rMlD~mgF~p~-Ir~iv~~~~ 256 (482)
T KOG0335|consen 179 SGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEAD-RMLDEMGFEPQ-IRKIVEQLG 256 (482)
T ss_pred ccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchH-Hhhhhcccccc-HHHHhcccC
Confidence 321 12223221 1112335789999999999998844 4489999999999999 8988 555544 555555432
Q ss_pred ----cCcEEEEEecCCChHH--Hhccc-CC-CCccc---cCCCcCceeEEecCCCCcchHHHHHHHHHHHHccC----CC
Q 005291 149 ----SKLKILITSATLDGEK--VSKFF-SN-CPTLN---VPGKLYPVEILHSKERPTSYLESALKTAIDIHVRE----PE 213 (704)
Q Consensus 149 ----~~~kiI~~SATl~~~~--~~~~~-~~-~~~i~---i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~ 213 (704)
...+-+++|||.+.+. +..+| .+ ...+. +.+..-.+..........+ ....++++.... ..
T Consensus 257 ~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~----kr~~Lldll~~~~~~~~~ 332 (482)
T KOG0335|consen 257 MPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEME----KRSKLLDLLNKDDGPPSD 332 (482)
T ss_pred CCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchh----hHHHHHHHhhcccCCccc
Confidence 3679999999997643 33333 22 11221 1111111111111111111 222333333222 23
Q ss_pred C-----CEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEccccccccc
Q 005291 214 G-----DVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLT 288 (704)
Q Consensus 214 g-----~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gid 288 (704)
+ .++|||.+++.+..+..+|... ++...++||..+..+|.+.++.|+.|...|+||||++++|+|
T Consensus 333 ~~~~~e~tlvFvEt~~~~d~l~~~l~~~----------~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlD 402 (482)
T KOG0335|consen 333 GEPKWEKTLVFVETKRGADELAAFLSSN----------GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLD 402 (482)
T ss_pred CCcccceEEEEeeccchhhHHHHHHhcC----------CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCC
Confidence 4 7999999999999999998764 788899999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCC
Q 005291 289 VDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPS 346 (704)
Q Consensus 289 ip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~ 346 (704)
||+|++||++.+ |..-.+|+||+||+||. ..|....|+..
T Consensus 403 i~~V~hVInyDm------------------P~d~d~YvHRIGRTGR~Gn~G~atsf~n~ 443 (482)
T KOG0335|consen 403 IPNVKHVINYDM------------------PADIDDYVHRIGRTGRVGNGGRATSFFNE 443 (482)
T ss_pred CCCCceeEEeec------------------CcchhhHHHhccccccCCCCceeEEEecc
Confidence 999999999443 33466888999999999 56899999873
No 59
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=6.2e-30 Score=259.19 Aligned_cols=311 Identities=20% Similarity=0.213 Sum_probs=229.1
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCC------CCCcEEEEcchhhHHHHHHHHHHHHHh--CCcc
Q 005291 8 QYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGY------TKSGIIGVTQPRRVAAVSVARRVAQEL--GVRL 77 (704)
Q Consensus 8 ~~~~~il~~l~~~~~vii~gpTGsGKT--t~l~~~l~~~~~------~~~~~ilv~~P~r~la~~~a~rva~~~--~~~v 77 (704)
+.|.+.++.+.+|.+++.++.||+||| .++|.++..... ..+..++++.|||+|+.++--.+.++. |...
T Consensus 245 PIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ks 324 (629)
T KOG0336|consen 245 PIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKS 324 (629)
T ss_pred cchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcce
Confidence 346677888899999999999999999 444544432221 234478999999999999877665443 2222
Q ss_pred Cceeeeeeeccc--ccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEE
Q 005291 78 GEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (704)
Q Consensus 78 g~~vg~~~~~~~--~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI 154 (704)
....|..-|.+. ....+..|+++|||.|....+.+. .|..+.++|+|||+ |++|..|-..+-+.++..+| +.+.+
T Consensus 325 vc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiRP-DRqtv 402 (629)
T KOG0336|consen 325 VCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD-RMLDMGFEPQIRKILLDIRP-DRQTV 402 (629)
T ss_pred EEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh-hhhcccccHHHHHHhhhcCC-cceee
Confidence 223333333332 233567899999999998887665 78999999999999 99999999998888888888 99999
Q ss_pred EEecCCChHH---HhcccCCCCccccCC----CcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHH
Q 005291 155 ITSATLDGEK---VSKFFSNCPTLNVPG----KLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIE 227 (704)
Q Consensus 155 ~~SATl~~~~---~~~~~~~~~~i~i~~----~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~ 227 (704)
+.|||.+... -..|+.++.++.+.. ....|...+.-....+.. +.+...+.- .....+++|||..+..+.
T Consensus 403 mTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~-~~~~~f~~~--ms~ndKvIiFv~~K~~AD 479 (629)
T KOG0336|consen 403 MTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKL-EIVQFFVAN--MSSNDKVIIFVSRKVMAD 479 (629)
T ss_pred eecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHH-HHHHHHHHh--cCCCceEEEEEechhhhh
Confidence 9999997653 456776554443332 122333333222222222 222222222 234568999999887666
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCcccccccc
Q 005291 228 KLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYN 307 (704)
Q Consensus 228 ~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~ 307 (704)
.+...+.- .++..-.+||+-.+.+|...++.|+.|+.+|+|||++|.+|+|+|+|++|++++|
T Consensus 480 ~LSSd~~l----------~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDF------- 542 (629)
T KOG0336|consen 480 HLSSDFCL----------KGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDF------- 542 (629)
T ss_pred hccchhhh----------cccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCC-------
Confidence 65554432 3778888999999999999999999999999999999999999999999999666
Q ss_pred CCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccccc
Q 005291 308 PSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (704)
Q Consensus 308 ~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~~ 351 (704)
|-...+|.||.||+||. +.|..+.+++..++..
T Consensus 543 -----------P~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~ 576 (629)
T KOG0336|consen 543 -----------PRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSM 576 (629)
T ss_pred -----------CccHHHHHHHhcccccCCCCcceEEEEehhhHHH
Confidence 55778999999999999 7899999999988854
No 60
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.8e-29 Score=262.00 Aligned_cols=310 Identities=22% Similarity=0.290 Sum_probs=226.3
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhc------CCCCCcEEEEcchhhHHHHHHHH---HHHHHhCCc
Q 005291 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH------GYTKSGIIGVTQPRRVAAVSVAR---RVAQELGVR 76 (704)
Q Consensus 7 ~~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~------~~~~~~~ilv~~P~r~la~~~a~---rva~~~~~~ 76 (704)
++.|.++++....|+.++-+|-|||||| .++.+.+... ....+...++++|+|++|.|+.. ++.+-+|+.
T Consensus 247 tpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~ 326 (731)
T KOG0339|consen 247 TPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLR 326 (731)
T ss_pred CcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccce
Confidence 3456778888889999999999999999 5555544432 22345588899999999998854 455556666
Q ss_pred cCceeeeeeecccc--cCcccceEEcchHHHHHHH-HhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEE
Q 005291 77 LGEEVGYAIRFEDR--TSERTLIKYLTDGVLLREI-LSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (704)
Q Consensus 77 vg~~vg~~~~~~~~--~~~~~~I~~~T~g~Ll~~l-~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~ki 153 (704)
+....|.....+.. ....+.|+|||||+|+.++ +....+.+++++||||++ |+.+..|... ++.|...-.++.|.
T Consensus 327 ~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad-rmfdmGfe~q-VrSI~~hirpdrQt 404 (731)
T KOG0339|consen 327 VVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD-RMFDMGFEPQ-VRSIKQHIRPDRQT 404 (731)
T ss_pred EEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechh-hhhccccHHH-HHHHHhhcCCcceE
Confidence 55445533332221 2256889999999999998 556689999999999999 9999988877 55555544449999
Q ss_pred EEEecCCChHH--H-hcccCCCCccccCC----CcCcee-EEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHH
Q 005291 154 LITSATLDGEK--V-SKFFSNCPTLNVPG----KLYPVE-ILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (704)
Q Consensus 154 I~~SATl~~~~--~-~~~~~~~~~i~i~~----~~~pv~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~ 225 (704)
|++|||+.... + .+++.+ |+-.+.| ..-.++ +.+........+...+. .+......|++|+|++-..+
T Consensus 405 llFsaTf~~kIe~lard~L~d-pVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~---~L~~f~S~gkvlifVTKk~~ 480 (731)
T KOG0339|consen 405 LLFSATFKKKIEKLARDILSD-PVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLR---HLVEFSSEGKVLIFVTKKAD 480 (731)
T ss_pred EEeeccchHHHHHHHHHHhcC-CeeEEEeehhccccchhheeeeccCcHHHHHHHHH---HhhhhccCCcEEEEEeccCC
Confidence 99999996533 3 455544 3322222 111111 11111111111122122 22223456899999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCcccccc
Q 005291 226 IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQ 305 (704)
Q Consensus 226 i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~ 305 (704)
+++++..|.-. ++.+..+||++.+.+|.+++..|+.+...|+|+|+++++|+|||+++.||++++.+
T Consensus 481 ~e~i~a~Lklk----------~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ar--- 547 (731)
T KOG0339|consen 481 AEEIAANLKLK----------GFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFAR--- 547 (731)
T ss_pred HHHHHHHhccc----------cceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccc---
Confidence 99999988654 89999999999999999999999999999999999999999999999999966533
Q ss_pred ccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCcccc
Q 005291 306 YNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (704)
Q Consensus 306 ~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~ 350 (704)
+...+.||+||.||. ..|+.|.|.|+.+-+
T Consensus 548 ---------------dIdththrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 548 ---------------DIDTHTHRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred ---------------hhHHHHHHhhhcccccccceeeEEechhhHH
Confidence 556778999999999 569999999987654
No 61
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=2e-28 Score=273.58 Aligned_cols=436 Identities=18% Similarity=0.219 Sum_probs=281.7
Q ss_pred HHHHHHH-HhccCCEEEEEcCCCCcHHHHHHHHHHhcCC---------CCCcEEEEcchhhHHHHHHHHHHHHHhC---C
Q 005291 9 YEETIVE-TVEQNPVVVVIGETGSGKSTQLSQILHRHGY---------TKSGIIGVTQPRRVAAVSVARRVAQELG---V 75 (704)
Q Consensus 9 ~~~~il~-~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~---------~~~~~ilv~~P~r~la~~~a~rva~~~~---~ 75 (704)
.|.++.+ +.+.+.+.+|+||||||||-++...++..-. ..+-+|+++.|.++||.++++.+.+.++ .
T Consensus 114 iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi 193 (1230)
T KOG0952|consen 114 IQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGI 193 (1230)
T ss_pred HHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccc
Confidence 3444443 3467899999999999999443333332211 1344999999999999999999987764 4
Q ss_pred ccCceeeeeeecccccCcccceEEcchHHHH---HHHHhC-CCCCCCceEEEeCCCcCCCCHH---HHHHHHHHHHH---
Q 005291 76 RLGEEVGYAIRFEDRTSERTLIKYLTDGVLL---REILSN-PDLSPYSVIILDEAHERSLNTD---ILLGLVKRLVN--- 145 (704)
Q Consensus 76 ~vg~~vg~~~~~~~~~~~~~~I~~~T~g~Ll---~~l~~~-~~l~~~~~IIiDEaHer~l~~d---~l~~llk~l~~--- 145 (704)
.+++..|.. .+.......++|+++||+.+- |....+ .+.+.+.+|||||+|. ++.+ .+..++.+.++
T Consensus 194 ~v~ELTGD~-ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHl--Lhd~RGpvlEtiVaRtlr~ve 270 (1230)
T KOG0952|consen 194 SVRELTGDT-QLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHL--LHDDRGPVLETIVARTLRLVE 270 (1230)
T ss_pred eEEEecCcc-hhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehh--hcCcccchHHHHHHHHHHHHH
Confidence 555555522 222222457999999999653 333222 2678899999999993 3333 34444444442
Q ss_pred HhccCcEEEEEecCC-ChHHHhcccCCC---CccccCCCc--CceeEEecCCCCc-------chHHHHHHHHHHHHccCC
Q 005291 146 LRASKLKILITSATL-DGEKVSKFFSNC---PTLNVPGKL--YPVEILHSKERPT-------SYLESALKTAIDIHVREP 212 (704)
Q Consensus 146 ~~~~~~kiI~~SATl-~~~~~~~~~~~~---~~i~i~~~~--~pv~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~ 212 (704)
.....+++|++|||+ |-+.++.|++-. .++.+.++. .|.+..+...... ..-+...+.+.+.+ ..
T Consensus 271 ssqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~--~~ 348 (1230)
T KOG0952|consen 271 SSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL--QE 348 (1230)
T ss_pred hhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHH--Hc
Confidence 222389999999999 457799998753 345555544 4444443221111 11122233444443 34
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhhhcCCC------CCCC-------eEEEeccCCCCHHHHhhccCCCCCCCcEEEEE
Q 005291 213 EGDVLIFMTGQDDIEKLVSKLEDKIRSLDEG------SCMD-------AVILPLHGSLPPEMQVRVFSPPPPNCRRFIVS 279 (704)
Q Consensus 213 ~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~------~~~~-------~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlva 279 (704)
+.+++|||+++++..+.++.|.+........ ...+ ..+..+|+||..++|..+.+.|..|.++|++|
T Consensus 349 g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~c 428 (1230)
T KOG0952|consen 349 GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCC 428 (1230)
T ss_pred CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEe
Confidence 6799999999999999999998765432211 0011 45778999999999999999999999999999
Q ss_pred cccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC---CCceEEEecCCcccccc----
Q 005291 280 TNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPSTVYHDE---- 352 (704)
Q Consensus 280 Tniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~---~~G~c~~L~~~~~~~~~---- 352 (704)
|.++++|+++|+--++|- -+..||+..|... -.+...-.|..|||||. ..|..+.+-+.+..+.+
T Consensus 429 TaTLAwGVNLPA~aViIK----GT~~ydsskg~f~----dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl 500 (1230)
T KOG0952|consen 429 TATLAWGVNLPAYAVIIK----GTQVYDSSKGSFV----DLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLL 500 (1230)
T ss_pred cceeeeccCCcceEEEec----CCcccccccCcee----eehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHH
Confidence 999999999997666663 3678999887542 23556667999999998 46887777666543321
Q ss_pred -------------CCCCCCCcccc---CChHHHHHhhccc------Cccc-cccccccCCCC-CC-H----HHHHHHHHH
Q 005291 353 -------------FLDVTVPEIQR---SSLAGSVLYLKSL------DLSD-INVLKFDFLDP-PS-S----ESLEDALKQ 403 (704)
Q Consensus 353 -------------~~~~~~pei~r---~~l~~~~L~l~~l------~~~~-~~~~~~~~~~~-P~-~----~~l~~al~~ 403 (704)
+.++-..||-- +++++.+=.|+.- +-.. .--.....+.+ |- . +-+..++..
T Consensus 501 ~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~ 580 (1230)
T KOG0952|consen 501 TGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAME 580 (1230)
T ss_pred cCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHH
Confidence 22233334433 2344444333321 1100 00001121221 21 1 223445556
Q ss_pred HHHcc--cccCCC---CCCHHHHHHhcCCCChHhHHHHHHhhh-cCCHHHHHHHHHHhcc
Q 005291 404 LYLID--AIDENG---SITSIGRTMAELPLEPSLSRMLMEANE-FGCLSQALTVAAMLSA 457 (704)
Q Consensus 404 L~~lg--ald~~~---~lT~lG~~~~~lpl~p~~~~~ll~~~~-~~c~~~~l~i~a~ls~ 457 (704)
|.... ..|..+ ..|++||.|+.+.+.-..-+.++.+.. +--.++++.++|+-++
T Consensus 581 L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeE 640 (1230)
T KOG0952|consen 581 LDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEE 640 (1230)
T ss_pred hhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHh
Confidence 65543 335443 799999999999999999999999988 7788999999887655
No 62
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.96 E-value=4.6e-28 Score=268.55 Aligned_cols=319 Identities=21% Similarity=0.277 Sum_probs=210.4
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHh-cCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCcee
Q 005291 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHR-HGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (704)
Q Consensus 3 ~LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~-~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~v 81 (704)
+||+..||.+|..... +++++|++|||+|||..+..++.. ..+.++++|+++.|++-++.|+...+. .++..- ...
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~-~~~~~~-~~T 136 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFS-IYLIPY-SVT 136 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHh-hccCcc-cce
Confidence 6899999999999988 999999999999999555444443 344567899999999999999885553 333221 111
Q ss_pred ee---eeeccc--ccCcccceEEcchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEE
Q 005291 82 GY---AIRFED--RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (704)
Q Consensus 82 g~---~~~~~~--~~~~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI 154 (704)
|. .+.-.. ..-...+|.|+||+.+.+.+.... .|+.++++|||||| |.......-.+++.++.......|+|
T Consensus 137 ~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~~qIL 215 (746)
T KOG0354|consen 137 GQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQGNQIL 215 (746)
T ss_pred eeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhccccEE
Confidence 10 010000 111357899999999998885432 47889999999999 66666656666666666554345999
Q ss_pred EEecCCCh--HHHhcccCC------CCc--------ccc-CCCcCceeEE------------------------------
Q 005291 155 ITSATLDG--EKVSKFFSN------CPT--------LNV-PGKLYPVEIL------------------------------ 187 (704)
Q Consensus 155 ~~SATl~~--~~~~~~~~~------~~~--------i~i-~~~~~pv~~~------------------------------ 187 (704)
++|||+.. +.+.++..+ ... ... .-...|+++.
T Consensus 216 gLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~ 295 (746)
T KOG0354|consen 216 GLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEIS 295 (746)
T ss_pred EEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccc
Confidence 99999953 223333211 000 000 0001111100
Q ss_pred -----ecC------C--------CC-------------------------------------------------------
Q 005291 188 -----HSK------E--------RP------------------------------------------------------- 193 (704)
Q Consensus 188 -----~~~------~--------~~------------------------------------------------------- 193 (704)
|.. . ..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~ 375 (746)
T KOG0354|consen 296 DKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRN 375 (746)
T ss_pred cccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHH
Confidence 000 0 00
Q ss_pred ------------------cchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEecc-
Q 005291 194 ------------------TSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLH- 254 (704)
Q Consensus 194 ------------------~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh- 254 (704)
...++...+.+.+.....+...++||+.+++.+..+..+|.+.... +..+.+-+..-+
T Consensus 376 ~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~---~ir~~~fiGq~~s 452 (746)
T KOG0354|consen 376 FTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHEL---GIKAEIFIGQGKS 452 (746)
T ss_pred HHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhc---ccccceeeecccc
Confidence 0000111122222233445678999999999999999999863211 111233333222
Q ss_pred ---CCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccc
Q 005291 255 ---GSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGR 331 (704)
Q Consensus 255 ---~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GR 331 (704)
.+|+..+|+++++.|++|..+|||||+|+|.|+||+.++.||-++ ..+ |....+||+||
T Consensus 453 ~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd--------~~s----------npIrmIQrrGR 514 (746)
T KOG0354|consen 453 TQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYD--------YSS----------NPIRMVQRRGR 514 (746)
T ss_pred ccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEec--------CCc----------cHHHHHHHhcc
Confidence 489999999999999999999999999999999999999999733 222 34566799999
Q ss_pred cCCCCCceEEEecCCc
Q 005291 332 AGRTRPGKCYRLYPST 347 (704)
Q Consensus 332 aGR~~~G~c~~L~~~~ 347 (704)
||.+.|+|+.|++..
T Consensus 515 -gRa~ns~~vll~t~~ 529 (746)
T KOG0354|consen 515 -GRARNSKCVLLTTGS 529 (746)
T ss_pred -ccccCCeEEEEEcch
Confidence 999999999999843
No 63
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=9.5e-29 Score=257.02 Aligned_cols=302 Identities=21% Similarity=0.212 Sum_probs=202.4
Q ss_pred CCEEEEEcCCCCcHH-HHHHHHHHhcCC--CCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeee---ecccc---
Q 005291 20 NPVVVVIGETGSGKS-TQLSQILHRHGY--TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAI---RFEDR--- 90 (704)
Q Consensus 20 ~~~vii~gpTGsGKT-t~l~~~l~~~~~--~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~---~~~~~--- 90 (704)
.++++|.|||||||| .++.+++..... -+.-+.+|+.|++.|+.|++..+..... ..|..|+... .+++.
T Consensus 183 ~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~-~tgL~V~~~sgq~sl~~E~~q 261 (620)
T KOG0350|consen 183 PRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNS-GTGLAVCSLSGQNSLEDEARQ 261 (620)
T ss_pred CCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhcc-CCceEEEecccccchHHHHHH
Confidence 568999999999999 444444443332 2335889999999999999998865442 2233343211 11111
Q ss_pred -cC----cccceEEcchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCCHHHHHHHHHHH----------------HHHh
Q 005291 91 -TS----ERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRL----------------VNLR 147 (704)
Q Consensus 91 -~~----~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~l~~d~l~~llk~l----------------~~~~ 147 (704)
.. ...+|+++|||+|..++.+.+ .|.++.++|||||+ |.++..|. .++-.+ +..+
T Consensus 262 L~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-Rll~qsfQ-~Wl~~v~~~~~~~k~~~~~~nii~~~ 339 (620)
T KOG0350|consen 262 LASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD-RLLDQSFQ-EWLDTVMSLCKTMKRVACLDNIIRQR 339 (620)
T ss_pred HhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH-HHHHHHHH-HHHHHHHHHhCCchhhcChhhhhhhc
Confidence 01 235899999999999997554 79999999999999 77776541 111111 1110
Q ss_pred ------------------ccCcEEEEEecCC--ChHHHhcccCCCC-ccccCCCcCceeEEecCCCC--cchH----HHH
Q 005291 148 ------------------ASKLKILITSATL--DGEKVSKFFSNCP-TLNVPGKLYPVEILHSKERP--TSYL----ESA 200 (704)
Q Consensus 148 ------------------~~~~kiI~~SATl--~~~~~~~~~~~~~-~i~i~~~~~pv~~~~~~~~~--~~~~----~~~ 200 (704)
.+.+.-+++|||+ ++..+.++--+-| .+.+.+. .-..|.-... ..++ .-.
T Consensus 340 ~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~---~~~ryslp~~l~~~~vv~~~~~k 416 (620)
T KOG0350|consen 340 QAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKP---LIGRYSLPSSLSHRLVVTEPKFK 416 (620)
T ss_pred ccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecc---cceeeecChhhhhceeecccccc
Confidence 0133456777777 5555655433322 3333221 0111111000 0000 000
Q ss_pred HHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEc
Q 005291 201 LKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVST 280 (704)
Q Consensus 201 ~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaT 280 (704)
...+..........++|+|+++.+.+.+++..|.-.+.. ....+-.+.|+++...|.+.++.|..|.+.|+|||
T Consensus 417 pl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~------~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcS 490 (620)
T KOG0350|consen 417 PLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS------DNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICS 490 (620)
T ss_pred hHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhcc------ccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEeh
Confidence 112223333445679999999999999999999844332 35566679999999999999999999999999999
Q ss_pred ccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccccc
Q 005291 281 NIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (704)
Q Consensus 281 niae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~~ 351 (704)
|++++|+|+.+|+.||+ ||| |.+.-+|+||+||++|. +.|.||.|.++.+...
T Consensus 491 D~laRGiDv~~v~~VIN--------Yd~----------P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~ 544 (620)
T KOG0350|consen 491 DALARGIDVNDVDNVIN--------YDP----------PASDKTYVHRAGRTARAGQDGYAITLLDKHEKRL 544 (620)
T ss_pred hhhhcCCcccccceEee--------cCC----------CchhhHHHHhhcccccccCCceEEEeeccccchH
Confidence 99999999999999998 443 66888999999999999 7899999998776543
No 64
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.96 E-value=1.1e-27 Score=257.81 Aligned_cols=285 Identities=15% Similarity=0.186 Sum_probs=181.9
Q ss_pred HHHHHHHHhccCC--EEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhC-------CccCc
Q 005291 9 YEETIVETVEQNP--VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG-------VRLGE 79 (704)
Q Consensus 9 ~~~~il~~l~~~~--~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~-------~~vg~ 79 (704)
||.+.++++.+++ ++++++|||||||......++. ...+.+++.|+++++.++++++...+. ..+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~----~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~ 76 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH----GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLH 76 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH----cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEE
Confidence 5778888888776 5889999999999543332222 234678899999999999998876652 11212
Q ss_pred eeeeeee----cc----------c--------ccCcccceEEcchHHHHHHHHh---CC------CCCCCceEEEeCCCc
Q 005291 80 EVGYAIR----FE----------D--------RTSERTLIKYLTDGVLLREILS---NP------DLSPYSVIILDEAHE 128 (704)
Q Consensus 80 ~vg~~~~----~~----------~--------~~~~~~~I~~~T~g~Ll~~l~~---~~------~l~~~~~IIiDEaHe 128 (704)
..|.... .. . .......|+++||+++...+.. .+ .+.++++||+||+|+
T Consensus 77 ~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~ 156 (357)
T TIGR03158 77 VSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHL 156 (357)
T ss_pred ecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccc
Confidence 2221000 00 0 0012356677778877654422 22 368899999999997
Q ss_pred CCCCHH-HHH---HHHHHHHHHhccCcEEEEEecCCChHH---Hhcc-cCCCCccccCCC--cC----------------
Q 005291 129 RSLNTD-ILL---GLVKRLVNLRASKLKILITSATLDGEK---VSKF-FSNCPTLNVPGK--LY---------------- 182 (704)
Q Consensus 129 r~l~~d-~l~---~llk~l~~~~~~~~kiI~~SATl~~~~---~~~~-~~~~~~i~i~~~--~~---------------- 182 (704)
.+.... .+. .... +........++++||||+++.. +... +-+.++..++|+ .+
T Consensus 157 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~ 235 (357)
T TIGR03158 157 YDAKQLVGMLFLLAYMQ-LIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFR 235 (357)
T ss_pred cCcccchhhhhhhHHHH-HHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccc
Confidence 553322 122 2222 2222223679999999998763 2232 113455566665 11
Q ss_pred ----ceeEEecCCC--CcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCC
Q 005291 183 ----PVEILHSKER--PTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGS 256 (704)
Q Consensus 183 ----pv~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~ 256 (704)
+++..+.... ....+....+.+.+.....+++++||||+++..++.+++.|++.. .+..+..+||.
T Consensus 236 ~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~--------~~~~~~~l~g~ 307 (357)
T TIGR03158 236 PVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQG--------LGDDIGRITGF 307 (357)
T ss_pred eeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhC--------CCceEEeeecC
Confidence 3444343311 111222223333333333456799999999999999999998641 24578889999
Q ss_pred CCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccC
Q 005291 257 LPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAG 333 (704)
Q Consensus 257 l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaG 333 (704)
++..+|.++. +..|+|||+++++|||||++ +||. .|.+..+|+||+||+|
T Consensus 308 ~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi~--------------------~p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 308 APKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLIF--------------------SARDAAAFWQRLGRLG 357 (357)
T ss_pred CCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEEE--------------------CCCCHHHHhhhcccCC
Confidence 9999987653 57899999999999999987 4442 1457789999999998
No 65
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.96 E-value=3.2e-29 Score=252.40 Aligned_cols=300 Identities=19% Similarity=0.237 Sum_probs=219.1
Q ss_pred HHHHhccCCEEEEEcCCCCcHH-H-HHHHHHHhc------C--CCCCcEEEEcchhhHHHHHHHHHHHHHh------CC-
Q 005291 13 IVETVEQNPVVVVIGETGSGKS-T-QLSQILHRH------G--YTKSGIIGVTQPRRVAAVSVARRVAQEL------GV- 75 (704)
Q Consensus 13 il~~l~~~~~vii~gpTGsGKT-t-~l~~~l~~~------~--~~~~~~ilv~~P~r~la~~~a~rva~~~------~~- 75 (704)
=+..+.+|++.|-++-|||||| + .+|.++... + ...+..-++++|.|++|.|...-+.+.. |.
T Consensus 200 GlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P 279 (610)
T KOG0341|consen 200 GLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYP 279 (610)
T ss_pred CcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 3556778999999999999999 3 344443322 1 1345578889999999999887654332 21
Q ss_pred --ccCceeeeeeecc---cccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc
Q 005291 76 --RLGEEVGYAIRFE---DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (704)
Q Consensus 76 --~vg~~vg~~~~~~---~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~ 149 (704)
..+..+| ++... +......+|+++|||+|..++.... .|.-+.++.+|||+ |++|..|-.. ++.++...+.
T Consensus 280 ~lRs~LciG-G~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEAD-RmiDmGFEdd-ir~iF~~FK~ 356 (610)
T KOG0341|consen 280 ELRSLLCIG-GVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEAD-RMIDMGFEDD-IRTIFSFFKG 356 (610)
T ss_pred hhhhhhhhc-CccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHH-HHhhccchhh-HHHHHHHHhh
Confidence 1122233 12111 1234578999999999999986554 67778899999999 9999887666 6777777766
Q ss_pred CcEEEEEecCCChHHHhcccCCCCccccCCCcCceeEEecCC--------CCcchHHHHHHHHHHH-HccCCCCCEEEEe
Q 005291 150 KLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKE--------RPTSYLESALKTAIDI-HVREPEGDVLIFM 220 (704)
Q Consensus 150 ~~kiI~~SATl~~~~~~~~~~~~~~i~i~~~~~pv~~~~~~~--------~~~~~~~~~~~~~~~i-~~~~~~g~iLVFl 220 (704)
..+.+++|||++.. ++.|...+-+ -||.+..-.. ...+|+.+..+.+.-+ +......++|||+
T Consensus 357 QRQTLLFSATMP~K-IQ~FAkSALV-------KPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT~PpVLIFa 428 (610)
T KOG0341|consen 357 QRQTLLFSATMPKK-IQNFAKSALV-------KPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFA 428 (610)
T ss_pred hhheeeeeccccHH-HHHHHHhhcc-------cceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccCCCceEEEe
Confidence 88999999999854 4444433222 1222221110 1234554443333222 3345567999999
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCc
Q 005291 221 TGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (704)
Q Consensus 221 ~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~ 300 (704)
..+.++..+.++|--. ++.++.+||+-..++|...++.|+.|+..|+|||++|..|+|+|+|.+|||+++
T Consensus 429 EkK~DVD~IhEYLLlK----------GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDM 498 (610)
T KOG0341|consen 429 EKKADVDDIHEYLLLK----------GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDM 498 (610)
T ss_pred ccccChHHHHHHHHHc----------cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCC
Confidence 9999999999998653 899999999999999999999999999999999999999999999999999554
Q ss_pred cccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccccc
Q 005291 301 VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (704)
Q Consensus 301 ~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~~ 351 (704)
|-...+|.||+||+||. ..|..-.+.++...+.
T Consensus 499 ------------------P~eIENYVHRIGRTGRsg~~GiATTfINK~~~es 532 (610)
T KOG0341|consen 499 ------------------PEEIENYVHRIGRTGRSGKTGIATTFINKNQEES 532 (610)
T ss_pred ------------------hHHHHHHHHHhcccCCCCCcceeeeeecccchHH
Confidence 56778899999999999 6799988887765544
No 66
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.95 E-value=8.8e-28 Score=246.23 Aligned_cols=308 Identities=19% Similarity=0.202 Sum_probs=220.3
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhc---CC----CCCcEEEEcchhhHHHHHHHHHHHHHh---CC-
Q 005291 8 QYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH---GY----TKSGIIGVTQPRRVAAVSVARRVAQEL---GV- 75 (704)
Q Consensus 8 ~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~---~~----~~~~~ilv~~P~r~la~~~a~rva~~~---~~- 75 (704)
-.|+..+..+.+|++++..|.|||||| +++.+++... .. ..+...++++|+|+++.|+++.+.+.. +.
T Consensus 44 lIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~ 123 (569)
T KOG0346|consen 44 LIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKD 123 (569)
T ss_pred hhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHh
Confidence 457778888899999999999999999 4444444322 11 123367889999999999998765432 11
Q ss_pred -ccCceeeeeeec---ccccCcccceEEcchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc
Q 005291 76 -RLGEEVGYAIRF---EDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (704)
Q Consensus 76 -~vg~~vg~~~~~---~~~~~~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~ 149 (704)
.+.. +...+.. .....+..+|+++||+.+++++..++ .+..++++|+|||+ ..+.-++-. -++.+....|+
T Consensus 124 lr~~n-l~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEAD-LllsfGYee-dlk~l~~~LPr 200 (569)
T KOG0346|consen 124 LRAIN-LASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEAD-LLLSFGYEE-DLKKLRSHLPR 200 (569)
T ss_pred hhhhh-hhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhh-hhhhcccHH-HHHHHHHhCCc
Confidence 1000 1100000 01223568999999999999998776 67889999999999 344333333 37778888888
Q ss_pred CcEEEEEecCCCh--HHHhcccCCCC-ccccCCCcCc----eeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCC
Q 005291 150 KLKILITSATLDG--EKVSKFFSNCP-TLNVPGKLYP----VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTG 222 (704)
Q Consensus 150 ~~kiI~~SATl~~--~~~~~~~~~~~-~i~i~~~~~p----v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~ 222 (704)
..|.++||||++. ..+...|-..| ++.+.....| +..++......+.+.- +-.++. ..--.|++|||+|+
T Consensus 201 ~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfll-lyallK--L~LI~gKsliFVNt 277 (569)
T KOG0346|consen 201 IYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLL-LYALLK--LRLIRGKSLIFVNT 277 (569)
T ss_pred hhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHH-HHHHHH--HHHhcCceEEEEec
Confidence 8999999999954 45777665444 4444443333 3333333333222211 112222 22346899999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEccc--------------------
Q 005291 223 QDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNI-------------------- 282 (704)
Q Consensus 223 ~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTni-------------------- 282 (704)
.+.+.++.-.|++. ++..+.+.|.||..-|..+++.|..|...||||||.
T Consensus 278 Idr~YrLkLfLeqF----------GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~ 347 (569)
T KOG0346|consen 278 IDRCYRLKLFLEQF----------GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNP 347 (569)
T ss_pred hhhhHHHHHHHHHh----------CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCC
Confidence 99999999999886 788889999999999999999999999999999992
Q ss_pred ---------------ccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCC
Q 005291 283 ---------------AETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPS 346 (704)
Q Consensus 283 ---------------ae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~ 346 (704)
..+|||+..|..|||+++ |.+..+|+||+||++|. .+|....+...
T Consensus 348 kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~------------------P~t~~sYIHRvGRTaRg~n~GtalSfv~P 409 (569)
T KOG0346|consen 348 KNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDF------------------PETVTSYIHRVGRTARGNNKGTALSFVSP 409 (569)
T ss_pred CCccccccccCchhchhccccchheeeeeecCC------------------CCchHHHHHhccccccCCCCCceEEEecc
Confidence 348999999999999665 55667788999999999 78999888765
Q ss_pred ccc
Q 005291 347 TVY 349 (704)
Q Consensus 347 ~~~ 349 (704)
.+.
T Consensus 410 ~e~ 412 (569)
T KOG0346|consen 410 KEE 412 (569)
T ss_pred hHH
Confidence 443
No 67
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.95 E-value=5.6e-29 Score=260.98 Aligned_cols=310 Identities=21% Similarity=0.228 Sum_probs=208.7
Q ss_pred HHHHHHHhccC-CEEEEEcCCCCcHH-HHHHHHHHhcCC--------------CCCcEEEEcchhhHHHHHHHHHH---H
Q 005291 10 EETIVETVEQN-PVVVVIGETGSGKS-TQLSQILHRHGY--------------TKSGIIGVTQPRRVAAVSVARRV---A 70 (704)
Q Consensus 10 ~~~il~~l~~~-~~vii~gpTGsGKT-t~l~~~l~~~~~--------------~~~~~ilv~~P~r~la~~~a~rv---a 70 (704)
|.-.+...-.| .+++-.|+|||||| ++..+++.+... ......+|+.|||+||.|+.+.+ +
T Consensus 208 Qsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~ 287 (731)
T KOG0347|consen 208 QSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIA 287 (731)
T ss_pred hhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhc
Confidence 33344444445 78899999999999 555555542211 11124799999999999998876 3
Q ss_pred HHhCCccCceeeee--eecccccCcccceEEcchHHHHHHHHhCC----CCCCCceEEEeCCCcCCCCHHHHHH---HHH
Q 005291 71 QELGVRLGEEVGYA--IRFEDRTSERTLIKYLTDGVLLREILSNP----DLSPYSVIILDEAHERSLNTDILLG---LVK 141 (704)
Q Consensus 71 ~~~~~~vg~~vg~~--~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~----~l~~~~~IIiDEaHer~l~~d~l~~---llk 141 (704)
...+..+...+|.- ...+.......+|+|+|||+|..++..+. .+.+++++|+||++ |++..+.+.. +++
T Consensus 288 ~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaD-RmvekghF~Els~lL~ 366 (731)
T KOG0347|consen 288 EKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEAD-RMVEKGHFEELSKLLK 366 (731)
T ss_pred cccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHH-HHhhhccHHHHHHHHH
Confidence 44555665666621 11222234468999999999998886554 57889999999999 8887765444 344
Q ss_pred HHHH-HhccCcEEEEEecCCChHHHhcccC-----------CCCc---c-ccCCCcCceeEEecCCCCcchHHHHHHHHH
Q 005291 142 RLVN-LRASKLKILITSATLDGEKVSKFFS-----------NCPT---L-NVPGKLYPVEILHSKERPTSYLESALKTAI 205 (704)
Q Consensus 142 ~l~~-~~~~~~kiI~~SATl~~~~~~~~~~-----------~~~~---i-~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~ 205 (704)
.+.. ..+...|.+++|||+.-......-. +.++ + .+.-+.-|.-+-.. +...-.....+..+
T Consensus 367 ~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t--~q~~ta~~l~Es~I 444 (731)
T KOG0347|consen 367 HLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLT--PQSATASTLTESLI 444 (731)
T ss_pred HhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecC--cchhHHHHHHHHhh
Confidence 4442 1223679999999986332111100 0000 0 01111122111111 11111111112221
Q ss_pred HH-----------HccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCc
Q 005291 206 DI-----------HVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCR 274 (704)
Q Consensus 206 ~i-----------~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~ 274 (704)
.. ....-+|.+|||||+.+.+.+++-+|... ++..+++|+.|.+.+|.+.++.|++..-
T Consensus 445 ~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L----------~i~p~~LHA~M~QKqRLknLEkF~~~~~ 514 (731)
T KOG0347|consen 445 ECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNL----------DIPPLPLHASMIQKQRLKNLEKFKQSPS 514 (731)
T ss_pred cCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhc----------CCCCchhhHHHHHHHHHHhHHHHhcCCC
Confidence 11 12334799999999999999999998764 7888999999999999999999999999
Q ss_pred EEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCcccc
Q 005291 275 RFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (704)
Q Consensus 275 kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~ 350 (704)
-|+|||++|++|+|||+|.+||++.. |-+...|+||.||+.|. ..|....|+.+.+..
T Consensus 515 ~VLiaTDVAARGLDIp~V~HVIHYqV------------------PrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~ 573 (731)
T KOG0347|consen 515 GVLIATDVAARGLDIPGVQHVIHYQV------------------PRTSEIYVHRSGRTARANSEGVSVMLCGPQEVG 573 (731)
T ss_pred eEEEeehhhhccCCCCCcceEEEeec------------------CCccceeEecccccccccCCCeEEEEeChHHhH
Confidence 99999999999999999999999443 44556788999999999 689999998776643
No 68
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.95 E-value=6.3e-27 Score=262.99 Aligned_cols=296 Identities=14% Similarity=0.056 Sum_probs=197.4
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
...+++|.+.+..+..++..++++|||+|||..+..+..........++++++|+++|+.|+.+++.+..........+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~- 191 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHK- 191 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeE-
Confidence 4677899998888888888899999999999655433322111223489999999999999999987654332111111
Q ss_pred eeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChH
Q 005291 84 AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGE 163 (704)
Q Consensus 84 ~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~ 163 (704)
+...........|+++|++.+.+... ..+.++++||+||||+ ..... +..++...++..+++++|||+...
T Consensus 192 -i~~g~~~~~~~~I~VaT~qsl~~~~~--~~~~~~~~iIvDEaH~-~~~~~-----~~~il~~~~~~~~~lGLTATp~~~ 262 (501)
T PHA02558 192 -IYSGTAKDTDAPIVVSTWQSAVKQPK--EWFDQFGMVIVDECHL-FTGKS-----LTSIITKLDNCKFKFGLTGSLRDG 262 (501)
T ss_pred -EecCcccCCCCCEEEeeHHHHhhchh--hhccccCEEEEEchhc-ccchh-----HHHHHHhhhccceEEEEeccCCCc
Confidence 11111112346899999999876432 2578999999999994 43322 234444443356799999999532
Q ss_pred H-----HhcccCCCCcccc-------CCCcCceeEEe--cCCC--------CcchHH------------HHHHHHHHHHc
Q 005291 164 K-----VSKFFSNCPTLNV-------PGKLYPVEILH--SKER--------PTSYLE------------SALKTAIDIHV 209 (704)
Q Consensus 164 ~-----~~~~~~~~~~i~i-------~~~~~pv~~~~--~~~~--------~~~~~~------------~~~~~~~~i~~ 209 (704)
. +..+|+... ..+ .|...++++.. .... ..+|.. ..+..+....
T Consensus 263 ~~~~~~~~~~fG~i~-~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~- 340 (501)
T PHA02558 263 KANILQYVGLFGDIF-KPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKL- 340 (501)
T ss_pred cccHHHHHHhhCCce-EEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHH-
Confidence 1 234454311 111 12112222111 1000 011110 0111111111
Q ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEc-cccccccc
Q 005291 210 REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVST-NIAETSLT 288 (704)
Q Consensus 210 ~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaT-niae~gid 288 (704)
...++++|||+++.++++.+++.|.+. +..+..+||+++.++|.++++.|++|...||||| +++++|+|
T Consensus 341 ~~~~~~~lV~~~~~~h~~~L~~~L~~~----------g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~D 410 (501)
T PHA02558 341 AKKGENTFVMFKYVEHGKPLYEMLKKV----------YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGIS 410 (501)
T ss_pred HhcCCCEEEEEEEHHHHHHHHHHHHHc----------CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccc
Confidence 134578999999999999999999874 6689999999999999999999999999999998 89999999
Q ss_pred CCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCCCce
Q 005291 289 VDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGK 339 (704)
Q Consensus 289 ip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~ 339 (704)
+|+++.||.. ..+-|+..+.||+||+||..+|+
T Consensus 411 ip~ld~vIl~------------------~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 411 IKNLHHVIFA------------------HPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccccEEEEe------------------cCCcchhhhhhhhhccccCCCCC
Confidence 9999999952 23457788999999999997764
No 69
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.95 E-value=1.7e-26 Score=269.58 Aligned_cols=325 Identities=22% Similarity=0.228 Sum_probs=228.0
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
.+|.||.+.++.+.+|++++|+.||||||| +++.+++......+..+.+++-|+++|+.++++++.+......+ .++.
T Consensus 70 ~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~-~v~~ 148 (851)
T COG1205 70 RLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPG-KVTF 148 (851)
T ss_pred cccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCC-ccee
Confidence 389999999999999999999999999999 77777777776666678999999999999999999776543321 2221
Q ss_pred e-----eecccc---cCcccceEEcchHHHHHHHHhCC-----CCCCCceEEEeCCCc-CCCCHHHHHHHHHHHHHHh--
Q 005291 84 A-----IRFEDR---TSERTLIKYLTDGVLLREILSNP-----DLSPYSVIILDEAHE-RSLNTDILLGLVKRLVNLR-- 147 (704)
Q Consensus 84 ~-----~~~~~~---~~~~~~I~~~T~g~Ll~~l~~~~-----~l~~~~~IIiDEaHe-r~l~~d~l~~llk~l~~~~-- 147 (704)
. ...+.. ....++|++++|.||...++... .++++++||+||+|- |+.-..-+..++++++...
T Consensus 149 ~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~ 228 (851)
T COG1205 149 GRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRR 228 (851)
T ss_pred eeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhc
Confidence 1 111111 23568999999999988665443 578899999999995 4444444555566665543
Q ss_pred -ccCcEEEEEecCC-Ch-HHHhcccCCCCccccCCCcCc--eeEEecCCCCcc--------hHHHHHHHHHHHHccCCCC
Q 005291 148 -ASKLKILITSATL-DG-EKVSKFFSNCPTLNVPGKLYP--VEILHSKERPTS--------YLESALKTAIDIHVREPEG 214 (704)
Q Consensus 148 -~~~~kiI~~SATl-~~-~~~~~~~~~~~~i~i~~~~~p--v~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~~g 214 (704)
+.+.++|.+|||+ ++ +...++++..-...+.+...| ...+....+..- -.......+.... -..+-
T Consensus 229 ~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~-~~~~~ 307 (851)
T COG1205 229 YGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALL-VRNGI 307 (851)
T ss_pred cCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHH-HHcCc
Confidence 3478999999999 33 445566643222213332222 222222222100 1111112222221 13456
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEE
Q 005291 215 DVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVY 294 (704)
Q Consensus 215 ~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~ 294 (704)
++|||+.++..++.+.......+.... . .....+..++|+++.++|.++...++.|+.+++++||.+|-||||.++..
T Consensus 308 ~tL~F~~sr~~~e~~~~~~~~~~~~~~-~-~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~lda 385 (851)
T COG1205 308 QTLVFFRSRKQVELLYLSPRRRLVREG-G-KLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDA 385 (851)
T ss_pred eEEEEEehhhhhhhhhhchhHHHhhcc-h-hhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhh
Confidence 899999999999999755555443322 1 12356889999999999999999999999999999999999999999999
Q ss_pred EEeCCccccccccCCCCccccccccc-cHHhHHhhccccCCCC-CceEEEecCCccccc
Q 005291 295 VIDCGYVKQRQYNPSSGMYSLDVVQI-SKVQANQRVGRAGRTR-PGKCYRLYPSTVYHD 351 (704)
Q Consensus 295 VId~g~~k~~~~~~~~g~~~l~~~~i-S~~~~~QR~GRaGR~~-~G~c~~L~~~~~~~~ 351 (704)
||..|+ |. |..+++||+|||||.. .+..+..+..+..+.
T Consensus 386 vi~~g~------------------P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~ 426 (851)
T COG1205 386 VIAYGY------------------PGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDS 426 (851)
T ss_pred HhhcCC------------------CCchHHHHHHhhhhccCCCCCceEEEEeCCCccch
Confidence 998776 55 8899999999999995 666555555554444
No 70
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.94 E-value=1e-26 Score=247.52 Aligned_cols=312 Identities=17% Similarity=0.213 Sum_probs=239.5
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHh-cC-CCCCcEEEEcchhhHHHHHHHHHHHHH----hCCccCcee
Q 005291 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHR-HG-YTKSGIIGVTQPRRVAAVSVARRVAQE----LGVRLGEEV 81 (704)
Q Consensus 8 ~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~-~~-~~~~~~ilv~~P~r~la~~~a~rva~~----~~~~vg~~v 81 (704)
+.|...+..+..+-++||.+..|+|||.....+..+ .. ......++++.|||++|.|+...+... .|..+.-.+
T Consensus 50 kiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfI 129 (980)
T KOG4284|consen 50 KIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFI 129 (980)
T ss_pred chhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEe
Confidence 456777888889999999999999999322222221 11 123457889999999999998877543 344444455
Q ss_pred eee-eecccccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecC
Q 005291 82 GYA-IRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (704)
Q Consensus 82 g~~-~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SAT 159 (704)
|.. ...+...-..++|++.|||++..+...+. ..+.++++|+|||+ ..+++..+..-+..|....|...+++.+|||
T Consensus 130 GGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD-kL~~t~sfq~~In~ii~slP~~rQv~a~SAT 208 (980)
T KOG4284|consen 130 GGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD-KLMDTESFQDDINIIINSLPQIRQVAAFSAT 208 (980)
T ss_pred cCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHH-hhhchhhHHHHHHHHHHhcchhheeeEEecc
Confidence 532 23334444678999999999999885554 78899999999999 6888888888899999999888899999999
Q ss_pred CChH---HHhcccCCCCccccCCCc---CceeEEecCCCCc----chHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHH
Q 005291 160 LDGE---KVSKFFSNCPTLNVPGKL---YPVEILHSKERPT----SYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (704)
Q Consensus 160 l~~~---~~~~~~~~~~~i~i~~~~---~pv~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~ 229 (704)
.|.. .+++|+.++..+....+. +.+..++...... +-+...+..+-++...-+-.+.||||+....++-+
T Consensus 209 Yp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~ 288 (980)
T KOG4284|consen 209 YPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPI 288 (980)
T ss_pred CchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHH
Confidence 9754 488999888877766542 3334444332222 22334455555566666777999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCC
Q 005291 230 VSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPS 309 (704)
Q Consensus 230 ~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~ 309 (704)
+..|... ++.+.++.|.|+..+|..+++..+.-..+|||+|+..++|||-|.|+.|||.+
T Consensus 289 a~~L~ss----------G~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD---------- 348 (980)
T KOG4284|consen 289 ATHLKSS----------GLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNID---------- 348 (980)
T ss_pred HHHhhcc----------CCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecC----------
Confidence 9999764 88999999999999999999999999999999999999999999999999833
Q ss_pred CCccccccccccHHhHHhhccccCCC-CCceEEEecCCcc
Q 005291 310 SGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (704)
Q Consensus 310 ~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~ 348 (704)
.|..-..|.||+|||||. .-|..+.++-.+.
T Consensus 349 --------~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 349 --------APADEETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred --------CCcchHHHHHHhhhcccccccceeEEEeccch
Confidence 356667788999999999 5688887775443
No 71
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.4e-26 Score=246.84 Aligned_cols=307 Identities=17% Similarity=0.170 Sum_probs=213.0
Q ss_pred HHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcC-C-----CCCcEEEEcchhhHHHHHHHHHHHHHh--CCccCce
Q 005291 10 EETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG-Y-----TKSGIIGVTQPRRVAAVSVARRVAQEL--GVRLGEE 80 (704)
Q Consensus 10 ~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~~-~-----~~~~~ilv~~P~r~la~~~a~rva~~~--~~~vg~~ 80 (704)
|.+.+..+..+++++.++||||||| .+..+++.... . ..+-+.+|+.|+|+++.|++..+.+.. ...-...
T Consensus 163 q~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a 242 (593)
T KOG0344|consen 163 QKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRA 242 (593)
T ss_pred cchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhh
Confidence 4478888899999999999999999 34333443322 1 224488999999999999999876544 1111111
Q ss_pred ee--eeee----cccccCcccceEEcchHHHHHHHHhCC---CCCCCceEEEeCCCcCCCCH-HHHHHHHHHHHH-Hhcc
Q 005291 81 VG--YAIR----FEDRTSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNT-DILLGLVKRLVN-LRAS 149 (704)
Q Consensus 81 vg--~~~~----~~~~~~~~~~I~~~T~g~Ll~~l~~~~---~l~~~~~IIiDEaHer~l~~-d~l~~llk~l~~-~~~~ 149 (704)
.+ |... .........++.+.||-.+...+...+ .++.+.++|+||++ +.++. .|... +..+.. ...+
T Consensus 243 ~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~lfe~~~f~~Q-la~I~sac~s~ 320 (593)
T KOG0344|consen 243 AQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LLFEPEFFVEQ-LADIYSACQSP 320 (593)
T ss_pred hhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH-hhhChhhHHHH-HHHHHHHhcCc
Confidence 11 1100 001112357899999999888876654 78999999999999 67777 44444 444443 3345
Q ss_pred CcEEEEEecCCChHHHhcccC----CCCccccCCCcCce-----eEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEe
Q 005291 150 KLKILITSATLDGEKVSKFFS----NCPTLNVPGKLYPV-----EILHSKERPTSYLESALKTAIDIHVREPEGDVLIFM 220 (704)
Q Consensus 150 ~~kiI~~SATl~~~~~~~~~~----~~~~i~i~~~~~pv-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl 220 (704)
++++=++|||++.. +++|.. +...+.+..+.-.. +..|.... ...+-.+.++....-..++|||+
T Consensus 321 ~i~~a~FSat~~~~-VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse-----~~K~lA~rq~v~~g~~PP~lIfV 394 (593)
T KOG0344|consen 321 DIRVALFSATISVY-VEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSE-----KGKLLALRQLVASGFKPPVLIFV 394 (593)
T ss_pred chhhhhhhccccHH-HHHHHHHhhccceeEEEecchhHhhhhhhhheeeecc-----hhHHHHHHHHHhccCCCCeEEEE
Confidence 88899999999654 334431 22222222111110 01111000 11122233333334467999999
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCc
Q 005291 221 TGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (704)
Q Consensus 221 ~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~ 300 (704)
.+.+.+..+...|... +++.|..+||..+..+|.+.++.|+.|++.|++||+++++|+|+-||+.||+.++
T Consensus 395 Qs~eRak~L~~~L~~~---------~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~ 465 (593)
T KOG0344|consen 395 QSKERAKQLFEELEIY---------DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDF 465 (593)
T ss_pred ecHHHHHHHHHHhhhc---------cCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCC
Confidence 9999999998888622 5889999999999999999999999999999999999999999999999999443
Q ss_pred cccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccccc
Q 005291 301 VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (704)
Q Consensus 301 ~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~~ 351 (704)
|-|..+|+||+||+||. +.|+.|.+|++++...
T Consensus 466 ------------------p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ 499 (593)
T KOG0344|consen 466 ------------------PQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPR 499 (593)
T ss_pred ------------------CchhHHHHHHhhccCCCCCCcceEEEeccccchh
Confidence 55777888999999999 6799999999976654
No 72
>PRK13766 Hef nuclease; Provisional
Probab=99.94 E-value=1.4e-25 Score=266.40 Aligned_cols=317 Identities=22% Similarity=0.306 Sum_probs=207.5
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceee
Q 005291 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (704)
Q Consensus 3 ~LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg 82 (704)
.++.+.||.++...+..+ +++|++|||+|||.+....+.......+++++++.|++.++.|+++.+.+.++......+.
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~ 91 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVV 91 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEE
Confidence 466788999999887776 7799999999999644433333223456799999999999999999988877653111111
Q ss_pred ee--eecccc--cCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEe
Q 005291 83 YA--IRFEDR--TSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (704)
Q Consensus 83 ~~--~~~~~~--~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~S 157 (704)
+. ...... .-.+.+|+++|++.+...+.... .+.++++||+|||| +.........+++......+ ...+++||
T Consensus 92 ~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH-~~~~~~~~~~i~~~~~~~~~-~~~il~lT 169 (773)
T PRK13766 92 FTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH-RAVGNYAYVYIAERYHEDAK-NPLVLGLT 169 (773)
T ss_pred EeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc-cccccccHHHHHHHHHhcCC-CCEEEEEE
Confidence 11 111110 11356899999999988775543 57889999999999 44433323333344333333 67899999
Q ss_pred cCCCh--HHHhcccCCC--CccccCCC--------cCceeEEe--cC---------------------------------
Q 005291 158 ATLDG--EKVSKFFSNC--PTLNVPGK--------LYPVEILH--SK--------------------------------- 190 (704)
Q Consensus 158 ATl~~--~~~~~~~~~~--~~i~i~~~--------~~pv~~~~--~~--------------------------------- 190 (704)
||+.. +.+...+.+- ..+.+..+ ..+.++.+ ..
T Consensus 170 aTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~ 249 (773)
T PRK13766 170 ASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSIS 249 (773)
T ss_pred cCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 99832 2222211110 00000000 00000000 00
Q ss_pred ---------------------CCCc------------------------------chHH---------------------
Q 005291 191 ---------------------ERPT------------------------------SYLE--------------------- 198 (704)
Q Consensus 191 ---------------------~~~~------------------------------~~~~--------------------- 198 (704)
.... .|+.
T Consensus 250 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~ 329 (773)
T PRK13766 250 PDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVED 329 (773)
T ss_pred CCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhC
Confidence 0000 0000
Q ss_pred -----------------HHHHHHHHH----HccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCC-
Q 005291 199 -----------------SALKTAIDI----HVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGS- 256 (704)
Q Consensus 199 -----------------~~~~~~~~i----~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~- 256 (704)
..+..+.++ ....+++++||||+++..++.+++.|... ++.+..+||.
T Consensus 330 ~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~----------~~~~~~~~g~~ 399 (773)
T PRK13766 330 PRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE----------GIKAVRFVGQA 399 (773)
T ss_pred HHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC----------CCceEEEEccc
Confidence 000011111 11245689999999999999999999653 5556667665
Q ss_pred -------CCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhc
Q 005291 257 -------LPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRV 329 (704)
Q Consensus 257 -------l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~ 329 (704)
|+..+|.++++.|++|..+|+|||+++++|+|+|++++||. ||+ +.+...++||+
T Consensus 400 ~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~--------yd~----------~~s~~r~iQR~ 461 (773)
T PRK13766 400 SKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIF--------YEP----------VPSEIRSIQRK 461 (773)
T ss_pred cccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE--------eCC----------CCCHHHHHHHh
Confidence 99999999999999999999999999999999999999997 443 34777889999
Q ss_pred cccCCCCCceEEEecCCcccc
Q 005291 330 GRAGRTRPGKCYRLYPSTVYH 350 (704)
Q Consensus 330 GRaGR~~~G~c~~L~~~~~~~ 350 (704)
||+||.++|.+|.|++++..+
T Consensus 462 GR~gR~~~~~v~~l~~~~t~e 482 (773)
T PRK13766 462 GRTGRQEEGRVVVLIAKGTRD 482 (773)
T ss_pred cccCcCCCCEEEEEEeCCChH
Confidence 999999999999999876654
No 73
>PRK09401 reverse gyrase; Reviewed
Probab=99.93 E-value=1.5e-25 Score=269.16 Aligned_cols=275 Identities=15% Similarity=0.110 Sum_probs=180.7
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhC---CccCcee
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG---VRLGEEV 81 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~---~~vg~~v 81 (704)
..+++|...+..+..|++++++||||||||+++..++.... ..+.+++++.|+|+|+.|+++++..... ..+....
T Consensus 80 ~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~-~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~ 158 (1176)
T PRK09401 80 KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLA-KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILY 158 (1176)
T ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEE
Confidence 45789999999999999999999999999976444333322 2467899999999999999999865432 2221122
Q ss_pred eee-eeccc-------ccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCH-----------HHHHHHHHH
Q 005291 82 GYA-IRFED-------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNT-----------DILLGLVKR 142 (704)
Q Consensus 82 g~~-~~~~~-------~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~-----------d~l~~llk~ 142 (704)
|.. ..... ......+|+|+|||.|.+.+. .-...++++||+|||| +.++. +|....+..
T Consensus 159 g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD-~~L~~~k~id~~l~~lGF~~~~i~~ 236 (1176)
T PRK09401 159 YHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVD-AVLKSSKNIDKLLYLLGFSEEDIEK 236 (1176)
T ss_pred ccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChH-HhhhcccchhhHHHhCCCCHHHHHH
Confidence 211 00000 012357999999999998765 2234569999999999 44431 111111222
Q ss_pred HHHHh------------------------ccCcEEEEEecCCChHHHh-cccCCCCccccCCCc---CceeEEecCCCCc
Q 005291 143 LVNLR------------------------ASKLKILITSATLDGEKVS-KFFSNCPTLNVPGKL---YPVEILHSKERPT 194 (704)
Q Consensus 143 l~~~~------------------------~~~~kiI~~SATl~~~~~~-~~~~~~~~i~i~~~~---~pv~~~~~~~~~~ 194 (704)
++... +.+.+++++|||+++..+. .+|.+.-.+.+.... ..+...|....
T Consensus 237 i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi~~~-- 314 (1176)
T PRK09401 237 AMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDSYIVDE-- 314 (1176)
T ss_pred HHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCcccccCCceEEEEEcc--
Confidence 22211 1157899999999764222 223222223332221 12333333221
Q ss_pred chHHHHHHHHHHHHccCCCCCEEEEeCCHHH---HHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCC
Q 005291 195 SYLESALKTAIDIHVREPEGDVLIFMTGQDD---IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP 271 (704)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~---i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~ 271 (704)
+. ...+..+.... ++.+||||++... ++.+++.|... ++.+..+||+| + +.++.|++
T Consensus 315 ~k----~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~----------gi~v~~~hg~l----~-~~l~~F~~ 374 (1176)
T PRK09401 315 DS----VEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDL----------GINAELAISGF----E-RKFEKFEE 374 (1176)
T ss_pred cH----HHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHC----------CCcEEEEeCcH----H-HHHHHHHC
Confidence 11 12222222222 3579999999776 99999998875 78999999999 2 23599999
Q ss_pred CCcEEEEE----cccccccccCCC-eEEEEeCCccccc
Q 005291 272 NCRRFIVS----TNIAETSLTVDG-VVYVIDCGYVKQR 304 (704)
Q Consensus 272 g~~kIlva----Tniae~gidip~-v~~VId~g~~k~~ 304 (704)
|+.+|||| ||++++|||+|+ |+|||++|.++.+
T Consensus 375 G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~ 412 (1176)
T PRK09401 375 GEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFK 412 (1176)
T ss_pred CCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEE
Confidence 99999999 699999999999 8999999988744
No 74
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.7e-25 Score=227.53 Aligned_cols=308 Identities=19% Similarity=0.262 Sum_probs=223.4
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCCC-CCcEEEEcchhhHHHHHHHHHHH---HHhCCccCceee
Q 005291 8 QYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYT-KSGIIGVTQPRRVAAVSVARRVA---QELGVRLGEEVG 82 (704)
Q Consensus 8 ~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~~~~-~~~~ilv~~P~r~la~~~a~rva---~~~~~~vg~~vg 82 (704)
+.|+..+..+-.|.++.+.+++|+||| ++...++...... ....++++.|+|+++.|+.+.+. ..++..+...+|
T Consensus 51 aIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~ig 130 (397)
T KOG0327|consen 51 AIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIG 130 (397)
T ss_pred HHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecC
Confidence 345555555568899999999999999 6665566554332 33478889999999999985432 233344444555
Q ss_pred eeeec-cc--ccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEec
Q 005291 83 YAIRF-ED--RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (704)
Q Consensus 83 ~~~~~-~~--~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SA 158 (704)
..... +. ......+|++.|||....++.... ....+.+.|+||++| ++..++... +..+++..+++.|++++||
T Consensus 131 g~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE-mLs~gfkdq-I~~if~~lp~~vQv~l~SA 208 (397)
T KOG0327|consen 131 GTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE-MLSRGFKDQ-IYDIFQELPSDVQVVLLSA 208 (397)
T ss_pred cccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHh-hhccchHHH-HHHHHHHcCcchhheeecc
Confidence 33322 22 122347899999999998885554 445589999999997 445455444 6777777788999999999
Q ss_pred CCChHHH--h-cccCCCCccccCCCc---CceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHH
Q 005291 159 TLDGEKV--S-KFFSNCPTLNVPGKL---YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (704)
Q Consensus 159 Tl~~~~~--~-~~~~~~~~i~i~~~~---~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~ 232 (704)
|++.+.+ . +|..++..+.+.... --+..+|....... .+..+.+++. ...+.+|||||++.+..+...
T Consensus 209 T~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~----k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~ 282 (397)
T KOG0327|consen 209 TMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE----KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDK 282 (397)
T ss_pred cCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc----cccHHHHHHH--hhhcceEEecchhhHHHHHHH
Confidence 9987763 3 444443333332111 11122222222222 4555566665 456889999999999999999
Q ss_pred HHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCc
Q 005291 233 LEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGM 312 (704)
Q Consensus 233 L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~ 312 (704)
|... +..+...||.|...+|..+...|+.|..+|+|.|+.+++|+|+-.+..||++.
T Consensus 283 L~~~----------~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinyd------------- 339 (397)
T KOG0327|consen 283 LRAH----------GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYD------------- 339 (397)
T ss_pred HhhC----------CceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeec-------------
Confidence 9554 78899999999999999999999999999999999999999999999999843
Q ss_pred cccccccccHHhHHhhccccCCC-CCceEEEecCCccccc
Q 005291 313 YSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (704)
Q Consensus 313 ~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~~ 351 (704)
+ |.-+.+|.||+||+||. ++|....+.++.+...
T Consensus 340 --l---P~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~ 374 (397)
T KOG0327|consen 340 --L---PARKENYIHRIGRAGRFGRKGVAINFVTEEDVRD 374 (397)
T ss_pred --c---ccchhhhhhhcccccccCCCceeeeeehHhhHHH
Confidence 3 45677888999999999 7899999998876644
No 75
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=2.2e-24 Score=243.76 Aligned_cols=427 Identities=17% Similarity=0.169 Sum_probs=260.7
Q ss_pred HHHHHHHH-hccCCEEEEEcCCCCcHH-HHHHHHHHhcCCC---------CCcEEEEcchhhHHHHHHHHHHHHHh---C
Q 005291 9 YEETIVET-VEQNPVVVVIGETGSGKS-TQLSQILHRHGYT---------KSGIIGVTQPRRVAAVSVARRVAQEL---G 74 (704)
Q Consensus 9 ~~~~il~~-l~~~~~vii~gpTGsGKT-t~l~~~l~~~~~~---------~~~~ilv~~P~r~la~~~a~rva~~~---~ 74 (704)
.|..+.++ +....+++++||||+||| ..+.-++.+.... ...+|+++.|.++|+.++...+++.+ |
T Consensus 313 IQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~G 392 (1674)
T KOG0951|consen 313 IQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLG 392 (1674)
T ss_pred HHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccC
Confidence 34444444 345679999999999999 3333444433221 12389999999999999988777654 4
Q ss_pred CccCceeeeeeecccccCcccceEEcchHHHHHHHHh---CCCCCCCceEEEeCCCcCCCCHH---HHHHHHHHHHHH--
Q 005291 75 VRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILS---NPDLSPYSVIILDEAHERSLNTD---ILLGLVKRLVNL-- 146 (704)
Q Consensus 75 ~~vg~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~---~~~l~~~~~IIiDEaHer~l~~d---~l~~llk~l~~~-- 146 (704)
+.|++..|... ........|.|+++||+..--.-.. +...+-++++|+||+| +++.+ .+..++.+....
T Consensus 393 I~V~ElTgD~~-l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIH--LLhDdRGpvLESIVaRt~r~se 469 (1674)
T KOG0951|consen 393 ITVLELTGDSQ-LGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIH--LLHDDRGPVLESIVARTFRRSE 469 (1674)
T ss_pred cEEEEeccccc-chhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhh--hcccccchHHHHHHHHHHHHhh
Confidence 45544444211 1122235799999999865322222 2345678999999999 33222 233333332222
Q ss_pred -hccCcEEEEEecCCC-hHHHhcccCCCC--ccc--cCCCcCceeEEecCCCCcch---HHHHHHHHHH-HHccCCCCCE
Q 005291 147 -RASKLKILITSATLD-GEKVSKFFSNCP--TLN--VPGKLYPVEILHSKERPTSY---LESALKTAID-IHVREPEGDV 216 (704)
Q Consensus 147 -~~~~~kiI~~SATl~-~~~~~~~~~~~~--~i~--i~~~~~pv~~~~~~~~~~~~---~~~~~~~~~~-i~~~~~~g~i 216 (704)
...+.+++++|||++ -+.+..|+.-.+ .+. -.-|+.|++..|......+. +..+-+..++ +......+++
T Consensus 470 s~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qV 549 (1674)
T KOG0951|consen 470 STEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQV 549 (1674)
T ss_pred hcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcE
Confidence 224899999999995 455666664322 222 24467777776654332222 2222222222 2233445899
Q ss_pred EEEeCCHHHHHHHHHHHHHHhhh----------cC-----------------CCCCCCeEEEeccCCCCHHHHhhccCCC
Q 005291 217 LIFMTGQDDIEKLVSKLEDKIRS----------LD-----------------EGSCMDAVILPLHGSLPPEMQVRVFSPP 269 (704)
Q Consensus 217 LVFl~~~~~i~~~~~~L~~~~~~----------~~-----------------~~~~~~~~v~~lh~~l~~~~r~~v~~~~ 269 (704)
|||+.+++|.-+.++.+++.+-+ .. -.....+.+..+|+||+..+|..+.+.|
T Consensus 550 LVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf 629 (1674)
T KOG0951|consen 550 LVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLF 629 (1674)
T ss_pred EEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHH
Confidence 99999999999999999854311 00 0022357789999999999999999999
Q ss_pred CCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCC-----CceEEEec
Q 005291 270 PPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR-----PGKCYRLY 344 (704)
Q Consensus 270 ~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~-----~G~c~~L~ 344 (704)
.+|.++|+|+|.++++||++|+-+++|- -..+|||..|.. .++|+.+-.||.|||||.+ .|+.+.=+
T Consensus 630 ~~g~iqvlvstatlawgvnlpahtViik----gtqvy~pekg~w----~elsp~dv~qmlgragrp~~D~~gegiiit~~ 701 (1674)
T KOG0951|consen 630 ADGHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYDPEKGRW----TELSPLDVMQMLGRAGRPQYDTCGEGIIITDH 701 (1674)
T ss_pred hcCceeEEEeehhhhhhcCCCcceEEec----CccccCcccCcc----ccCCHHHHHHHHhhcCCCccCcCCceeeccCc
Confidence 9999999999999999999998888884 356899999865 3678888899999999983 34444333
Q ss_pred CCcccccc-CCC-CCCCccccCChHHHHHhhcccCcccc----ccccc------------------cCCCCCC----HHH
Q 005291 345 PSTVYHDE-FLD-VTVPEIQRSSLAGSVLYLKSLDLSDI----NVLKF------------------DFLDPPS----SES 396 (704)
Q Consensus 345 ~~~~~~~~-~~~-~~~pei~r~~l~~~~L~l~~l~~~~~----~~~~~------------------~~~~~P~----~~~ 396 (704)
++-.|.-. |.+ .++++-.-..|..-+=.=+.+|+... +-... +..|++. .+-
T Consensus 702 se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~l 781 (1674)
T KOG0951|consen 702 SELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADL 781 (1674)
T ss_pred hHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhh
Confidence 33333221 111 12222222222221111122332210 00000 0112221 145
Q ss_pred HHHHHHHHHHcccccCC---C--CCCHHHHHHhcCCCChHhHHHHHHhhhcCCHH
Q 005291 397 LEDALKQLYLIDAIDEN---G--SITSIGRTMAELPLEPSLSRMLMEANEFGCLS 446 (704)
Q Consensus 397 l~~al~~L~~lgald~~---~--~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~ 446 (704)
+..|...|...|.|--+ | +.|.+|+..+.+.+.-.-....-.....-|.+
T Consensus 782 vhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~ 836 (1674)
T KOG0951|consen 782 VHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSE 836 (1674)
T ss_pred HHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhcc
Confidence 67788888988888432 2 68899999999988655544443333333433
No 76
>PRK09694 helicase Cas3; Provisional
Probab=99.92 E-value=1e-23 Score=245.34 Aligned_cols=298 Identities=20% Similarity=0.195 Sum_probs=181.2
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc-CCCCCcEEEEcchhhHHHHHHHHHHHHH----hC-CccCc
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQE----LG-VRLGE 79 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~-~~~~~~~ilv~~P~r~la~~~a~rva~~----~~-~~vg~ 79 (704)
.+++|..+.+....+..++|.+|||+|||.....++... .......+++..|+++.+.++++|+.+. ++ ..+..
T Consensus 287 p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L 366 (878)
T PRK09694 287 PRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPNLIL 366 (878)
T ss_pred ChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEe
Confidence 467787775554557889999999999995444333322 1223458999999999999999998642 22 11222
Q ss_pred eeeeee---eccc--------------------------ccCcccceEEcchHHHHHHHHhCC--CCCC----CceEEEe
Q 005291 80 EVGYAI---RFED--------------------------RTSERTLIKYLTDGVLLREILSNP--DLSP----YSVIILD 124 (704)
Q Consensus 80 ~vg~~~---~~~~--------------------------~~~~~~~I~~~T~g~Ll~~l~~~~--~l~~----~~~IIiD 124 (704)
..|... .+.. +..--..++|+|...++...+..+ .+.. -++||||
T Consensus 367 ~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiD 446 (878)
T PRK09694 367 AHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVD 446 (878)
T ss_pred ecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEe
Confidence 222110 0000 000125899999888775544322 2222 3699999
Q ss_pred CCCcCCCCHHHHHHHHHHHHHHh-ccCcEEEEEecCCChHHHhccc---CCC---------CccccCC----CcC-----
Q 005291 125 EAHERSLNTDILLGLVKRLVNLR-ASKLKILITSATLDGEKVSKFF---SNC---------PTLNVPG----KLY----- 182 (704)
Q Consensus 125 EaHer~l~~d~l~~llk~l~~~~-~~~~kiI~~SATl~~~~~~~~~---~~~---------~~i~i~~----~~~----- 182 (704)
|+| .++. +...++..+++.. ..+.++|+||||++.....+++ +.. |.+...+ ..+
T Consensus 447 EVH--AyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~ 523 (878)
T PRK09694 447 EVH--AYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAH 523 (878)
T ss_pred chh--hCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeecccc
Confidence 999 4554 3334444444322 2367899999999875432222 211 1111100 000
Q ss_pred --------ceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEecc
Q 005291 183 --------PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLH 254 (704)
Q Consensus 183 --------pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh 254 (704)
.+.+..............++.+.+.. ..++++||||||++.++++++.|++... ....+..+|
T Consensus 524 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~-------~~~~v~llH 594 (878)
T PRK09694 524 PEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELNN-------TQVDIDLFH 594 (878)
T ss_pred ccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhCC-------CCceEEEEe
Confidence 01111000000011122233333322 3467899999999999999999986521 246789999
Q ss_pred CCCCHHHHh----hccCCC-CCCC---cEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHH
Q 005291 255 GSLPPEMQV----RVFSPP-PPNC---RRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQAN 326 (704)
Q Consensus 255 ~~l~~~~r~----~v~~~~-~~g~---~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~ 326 (704)
|.++..+|. ++++.| ++|+ .+|||||+++|.||||+ ++++|.. ..+..+++
T Consensus 595 srf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItd--------------------laPidsLi 653 (878)
T PRK09694 595 ARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQ--------------------LCPVDLLF 653 (878)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEEC--------------------CCCHHHHH
Confidence 999999984 556667 5555 48999999999999996 7888741 12346889
Q ss_pred hhccccCCCC
Q 005291 327 QRVGRAGRTR 336 (704)
Q Consensus 327 QR~GRaGR~~ 336 (704)
||+||+||..
T Consensus 654 QRaGR~~R~~ 663 (878)
T PRK09694 654 QRLGRLHRHH 663 (878)
T ss_pred HHHhccCCCC
Confidence 9999999973
No 77
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.92 E-value=8.9e-25 Score=246.90 Aligned_cols=311 Identities=20% Similarity=0.277 Sum_probs=219.3
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHH-HH-HHHHHHhcCC-----CCCcEEEEcchhhHHHHHHHHHHHHHh---C
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKS-TQ-LSQILHRHGY-----TKSGIIGVTQPRRVAAVSVARRVAQEL---G 74 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKT-t~-l~~~l~~~~~-----~~~~~ilv~~P~r~la~~~a~rva~~~---~ 74 (704)
+..+.|.+.+++|.+|+.+|.+|.|||||| .+ +|.+...... ..|...+++.|+|.++.|+.+.+.... +
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ 466 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLG 466 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcC
Confidence 455678889999999999999999999999 44 5555332211 235588999999999999988765443 3
Q ss_pred CccCceeeeeeecccc---cCcccceEEcchHHHHHHHHhCC----CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh
Q 005291 75 VRLGEEVGYAIRFEDR---TSERTLIKYLTDGVLLREILSNP----DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (704)
Q Consensus 75 ~~vg~~vg~~~~~~~~---~~~~~~I~~~T~g~Ll~~l~~~~----~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~ 147 (704)
..+...+| +.+.... ....+.|+|||+|.....+..+. .+.++.++|+||++ |+++..|.....+.+...+
T Consensus 467 ir~v~vyg-g~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaD-rmfdmgfePq~~~Ii~nlr 544 (997)
T KOG0334|consen 467 IRVVCVYG-GSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEAD-RMFDMGFEPQITRILQNLR 544 (997)
T ss_pred ceEEEecC-CccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhh-hhheeccCcccchHHhhcc
Confidence 33333333 1111111 12358999999999988884433 56667799999999 8888877666555444445
Q ss_pred ccCcEEEEEecCCChHH--HhcccCCCCc-cccCCCcC---ceeEEecCCC-CcchHHHHHHHHHHHHccCCCCCEEEEe
Q 005291 148 ASKLKILITSATLDGEK--VSKFFSNCPT-LNVPGKLY---PVEILHSKER-PTSYLESALKTAIDIHVREPEGDVLIFM 220 (704)
Q Consensus 148 ~~~~kiI~~SATl~~~~--~~~~~~~~~~-i~i~~~~~---pv~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~g~iLVFl 220 (704)
+ +.|.+++|||.+... ++.-.-..|+ +.+.++.. .|+..+.... ....+... ..+ +......++++|||
T Consensus 545 p-drQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL-~eL--l~e~~e~~~tiiFv 620 (997)
T KOG0334|consen 545 P-DRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKL-LEL--LGERYEDGKTIIFV 620 (997)
T ss_pred h-hhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHH-HHH--HHHHhhcCCEEEEE
Confidence 4 999999999997652 2221111222 22333211 1111111111 12222222 222 22333488999999
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCc
Q 005291 221 TGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (704)
Q Consensus 221 ~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~ 300 (704)
..++.+..+.+.|.+. ++.+..+||+.+..+|..+++.|++|..+++|||+++++|+|+.++..||++.+
T Consensus 621 ~~qe~~d~l~~~L~~a----------g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~ 690 (997)
T KOG0334|consen 621 DKQEKADALLRDLQKA----------GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDF 690 (997)
T ss_pred cCchHHHHHHHHHHhc----------CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEccc
Confidence 9999999999999854 777778999999999999999999999999999999999999999999999544
Q ss_pred cccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccc
Q 005291 301 VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (704)
Q Consensus 301 ~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~ 349 (704)
|--+..|.||.||+||+ +.|.||.+.+.++.
T Consensus 691 ------------------pnh~edyvhR~gRTgragrkg~AvtFi~p~q~ 722 (997)
T KOG0334|consen 691 ------------------PNHYEDYVHRVGRTGRAGRKGAAVTFITPDQL 722 (997)
T ss_pred ------------------chhHHHHHHHhcccccCCccceeEEEeChHHh
Confidence 33455688999999999 67999999877433
No 78
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=7.3e-24 Score=240.03 Aligned_cols=303 Identities=17% Similarity=0.153 Sum_probs=195.0
Q ss_pred CCchHHHHHHHHHhccC---CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCce
Q 005291 4 LPILQYEETIVETVEQN---PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~---~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~ 80 (704)
..+++||.+.+..+..+ +.-+|+.|||+|||.+...++... ++.++|++|+..++.|..+.+.+.........
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I 329 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQI 329 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHHHHHHhcCCCCceE
Confidence 34789999999987743 367889999999996655555443 35789999999999999999987665443222
Q ss_pred eeeeeecccccCcccceEEcchHHHHHHHH---------hCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCc
Q 005291 81 VGYAIRFEDRTSERTLIKYLTDGVLLREIL---------SNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL 151 (704)
Q Consensus 81 vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~---------~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~ 151 (704)
..|.-...........|+++|..++..... ....-..+++||+||||. . .... .+.++.... ..
T Consensus 330 ~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~-l-pA~~----fr~il~~l~-a~ 402 (732)
T TIGR00603 330 CRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHV-V-PAAM----FRRVLTIVQ-AH 402 (732)
T ss_pred EEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccc-c-cHHH----HHHHHHhcC-cC
Confidence 222111111112246799999988753211 111124689999999993 3 2222 333333333 44
Q ss_pred EEEEEecCCCh--HH---HhcccCCCCcccc-------CCCcCceeEE--ecCCCCc---chHH----------------
Q 005291 152 KILITSATLDG--EK---VSKFFSNCPTLNV-------PGKLYPVEIL--HSKERPT---SYLE---------------- 198 (704)
Q Consensus 152 kiI~~SATl~~--~~---~~~~~~~~~~i~i-------~~~~~pv~~~--~~~~~~~---~~~~---------------- 198 (704)
..+++|||+.. .. +..++| +.++.. .|..-|++.. +.+.... .|+.
T Consensus 403 ~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K 481 (732)
T TIGR00603 403 CKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNK 481 (732)
T ss_pred cEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHH
Confidence 57999999932 11 333343 333222 2333333321 1111111 1110
Q ss_pred -HHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCC-CcEE
Q 005291 199 -SALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN-CRRF 276 (704)
Q Consensus 199 -~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g-~~kI 276 (704)
..+..++..|. ..+.++|||+.....++.+++.|. +..+||+++..+|.++++.|+.| ..++
T Consensus 482 ~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L~---------------~~~I~G~ts~~ER~~il~~Fr~~~~i~v 545 (732)
T TIGR00603 482 FRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKLG---------------KPFIYGPTSQQERMQILQNFQHNPKVNT 545 (732)
T ss_pred HHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHcC---------------CceEECCCCHHHHHHHHHHHHhCCCccE
Confidence 11122333332 356799999999988887777551 23489999999999999999865 7899
Q ss_pred EEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCCCc-eE-------EEecCCcc
Q 005291 277 IVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPG-KC-------YRLYPSTV 348 (704)
Q Consensus 277 lvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G-~c-------~~L~~~~~ 348 (704)
||+|+++.+|||+|++++||.. ++ ..-|..++.||.||++|.++| .+ |.|.+++.
T Consensus 546 Lv~SkVgdeGIDlP~a~vvI~~--------s~---------~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 546 IFLSKVGDTSIDLPEANVLIQI--------SS---------HYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred EEEecccccccCCCCCCEEEEe--------CC---------CCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 9999999999999999999972 11 124889999999999999654 43 88888776
Q ss_pred ccc
Q 005291 349 YHD 351 (704)
Q Consensus 349 ~~~ 351 (704)
.+.
T Consensus 609 ~E~ 611 (732)
T TIGR00603 609 QEM 611 (732)
T ss_pred hHH
Confidence 654
No 79
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=2.2e-24 Score=248.32 Aligned_cols=329 Identities=15% Similarity=0.158 Sum_probs=240.0
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
..++++|++.+..|..|+.+++++|||||||...-.++.... ..+.++++|.|.++|..|.++.+...+|.- ...+|
T Consensus 118 F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al-~~~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~vG- 194 (1041)
T COG4581 118 FELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALAL-RDGQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMVG- 194 (1041)
T ss_pred CCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHH-HcCCceEeccchhhhhhhHHHHHHHHhhhh-hhhcc-
Confidence 457899999999999999999999999999955444333322 345679999999999999999998888744 23344
Q ss_pred eeecccccCcccceEEcchHHHHHHHHhC-CCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC-C
Q 005291 84 AIRFEDRTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL-D 161 (704)
Q Consensus 84 ~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~-~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl-~ 161 (704)
-+..+-..++++.+++||+++|.+++..+ ..+.++..||+||+|. .-+. ..-.+...++-..|.++++|++|||+ |
T Consensus 195 L~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHy-i~D~-eRG~VWEE~Ii~lP~~v~~v~LSATv~N 272 (1041)
T COG4581 195 LMTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHY-IGDR-ERGVVWEEVIILLPDHVRFVFLSATVPN 272 (1041)
T ss_pred ceecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeee-cccc-ccchhHHHHHHhcCCCCcEEEEeCCCCC
Confidence 23345566778899999999999999665 5899999999999993 2222 23333455566677688999999999 7
Q ss_pred hHHHhcccC-----CCCccccCCCcCceeEEecCCC--------CcchHHHH----HHH---------------------
Q 005291 162 GEKVSKFFS-----NCPTLNVPGKLYPVEILHSKER--------PTSYLESA----LKT--------------------- 203 (704)
Q Consensus 162 ~~~~~~~~~-----~~~~i~i~~~~~pv~~~~~~~~--------~~~~~~~~----~~~--------------------- 203 (704)
++.|+.|++ ++.++..+.|..|.+.++.... ..++.... ...
T Consensus 273 ~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~ 352 (1041)
T COG4581 273 AEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYAR 352 (1041)
T ss_pred HHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccc
Confidence 788999996 5677888889999888765431 11111110 000
Q ss_pred -----------------HHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHH-------------------hhhcCCCC--C
Q 005291 204 -----------------AIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDK-------------------IRSLDEGS--C 245 (704)
Q Consensus 204 -----------------~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~-------------------~~~~~~~~--~ 245 (704)
++........-++++|+=++..|+..+..+... +..+.... .
T Consensus 353 ~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~l 432 (1041)
T COG4581 353 RTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDREL 432 (1041)
T ss_pred cccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcC
Confidence 111122233358999999999999888877521 01111111 0
Q ss_pred C----------CeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCcccc
Q 005291 246 M----------DAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSL 315 (704)
Q Consensus 246 ~----------~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l 315 (704)
+ .-.+..+|++|-|..+..+...|..|-+||++||.+.+.|+|.| .+.||-+++.| ||..
T Consensus 433 p~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP-artvv~~~l~K---~dG~------ 502 (1041)
T COG4581 433 PLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP-ARTVVFTSLSK---FDGN------ 502 (1041)
T ss_pred cccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc-ccceeeeeeEE---ecCC------
Confidence 1 11355899999999999999999999999999999999999999 56666566665 4432
Q ss_pred ccccccHHhHHhhccccCCC---CCceEEEecCCc
Q 005291 316 DVVQISKVQANQRVGRAGRT---RPGKCYRLYPST 347 (704)
Q Consensus 316 ~~~~iS~~~~~QR~GRaGR~---~~G~c~~L~~~~ 347 (704)
.-.+++..+|.|++|||||. ..|.++..++..
T Consensus 503 ~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 503 GHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred ceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 23588999999999999998 469998886544
No 80
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.92 E-value=3.7e-23 Score=206.83 Aligned_cols=290 Identities=20% Similarity=0.255 Sum_probs=201.8
Q ss_pred HHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhC-CccCceeeeeeeccc
Q 005291 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG-VRLGEEVGYAIRFED 89 (704)
Q Consensus 11 ~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~-~~vg~~vg~~~~~~~ 89 (704)
+.+++.+.+.+.++|.|-||+|||..+-+-+... ...|++|.+..||...+.+++.|+.+.+. +.+....| ++
T Consensus 107 ~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~a-l~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg-----~S 180 (441)
T COG4098 107 NQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQA-LNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYG-----DS 180 (441)
T ss_pred HHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHH-HhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEec-----CC
Confidence 4577888999999999999999996665554433 24588999999999999999999988775 44433333 22
Q ss_pred ccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhccc
Q 005291 90 RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (704)
Q Consensus 90 ~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~~ 169 (704)
..--.+.++++|...|+|.-. .++++||||++.-.+..|..+.. .+.+.++.....|.+|||.+.+.-.+..
T Consensus 181 ~~~fr~plvVaTtHQLlrFk~------aFD~liIDEVDAFP~~~d~~L~~--Av~~ark~~g~~IylTATp~k~l~r~~~ 252 (441)
T COG4098 181 DSYFRAPLVVATTHQLLRFKQ------AFDLLIIDEVDAFPFSDDQSLQY--AVKKARKKEGATIYLTATPTKKLERKIL 252 (441)
T ss_pred chhccccEEEEehHHHHHHHh------hccEEEEeccccccccCCHHHHH--HHHHhhcccCceEEEecCChHHHHHHhh
Confidence 222347899999999998765 37899999999655555544432 2223344467899999998766544443
Q ss_pred C-CCCccccCCC----cCceeEEecCCCCcchH-----HHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhh
Q 005291 170 S-NCPTLNVPGK----LYPVEILHSKERPTSYL-----ESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRS 239 (704)
Q Consensus 170 ~-~~~~i~i~~~----~~pv~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~ 239 (704)
. +...+.+|.| ..|+.-+.....-..++ ...+...++-+. ..+.++|||+|+.+..++++..|++.+
T Consensus 253 ~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~-~~~~P~liF~p~I~~~eq~a~~lk~~~-- 329 (441)
T COG4098 253 KGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQR-KTGRPVLIFFPEIETMEQVAAALKKKL-- 329 (441)
T ss_pred hCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHH-hcCCcEEEEecchHHHHHHHHHHHhhC--
Confidence 2 2333555543 23332221111111111 223333333332 345699999999999999999997764
Q ss_pred cCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCcccccccc
Q 005291 240 LDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQ 319 (704)
Q Consensus 240 ~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~ 319 (704)
+...+...|+.- ..|.+..+.|++|+.++|++|.|+|+|+|+|+|+++|- +... .-
T Consensus 330 ------~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl---------gaeh-------~v 385 (441)
T COG4098 330 ------PKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL---------GAEH-------RV 385 (441)
T ss_pred ------CccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEe---------cCCc-------cc
Confidence 567778889863 46778888999999999999999999999999999883 1111 23
Q ss_pred ccHHhHHhhccccCCC--C-CceEE
Q 005291 320 ISKVQANQRVGRAGRT--R-PGKCY 341 (704)
Q Consensus 320 iS~~~~~QR~GRaGR~--~-~G~c~ 341 (704)
-|.++.+|.+||+||. + .|..+
T Consensus 386 fTesaLVQIaGRvGRs~~~PtGdv~ 410 (441)
T COG4098 386 FTESALVQIAGRVGRSLERPTGDVL 410 (441)
T ss_pred ccHHHHHHHhhhccCCCcCCCCcEE
Confidence 4788999999999998 3 36544
No 81
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.91 E-value=1.9e-23 Score=251.59 Aligned_cols=275 Identities=15% Similarity=0.152 Sum_probs=181.4
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHh---CCccCc--
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL---GVRLGE-- 79 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~---~~~vg~-- 79 (704)
..+++|...+..+..|++++++||||||||+++..++.... ..+.+++++.|+++|+.|+++.+.... +.....
T Consensus 78 ~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~-~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~ 156 (1171)
T TIGR01054 78 EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLA-KKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIG 156 (1171)
T ss_pred CCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 46789999999999999999999999999976544443322 236789999999999999999876543 222111
Q ss_pred -eeeeeeeccc-------ccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCH-----------HHHHHHH
Q 005291 80 -EVGYAIRFED-------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNT-----------DILLGLV 140 (704)
Q Consensus 80 -~vg~~~~~~~-------~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~-----------d~l~~ll 140 (704)
..| ...... ......+|+++||+.|.+.+..-. .+++++|+|||| +.++. +|....+
T Consensus 157 ~~~G-g~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~~~~~iVvDEaD-~~L~~~k~vd~il~llGF~~e~i 232 (1171)
T TIGR01054 157 AYHS-RLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--PKFDFIFVDDVD-ALLKASKNVDKLLKLLGFSEELI 232 (1171)
T ss_pred eecC-CCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--CCCCEEEEeChH-hhhhccccHHHHHHHcCCCHHHH
Confidence 112 111111 112347899999999987765422 289999999999 45541 1111111
Q ss_pred HHH----------------------HHHhccCc--EEEEEecCC-ChHHHhcccCCCCccccCCCc---CceeEEecCCC
Q 005291 141 KRL----------------------VNLRASKL--KILITSATL-DGEKVSKFFSNCPTLNVPGKL---YPVEILHSKER 192 (704)
Q Consensus 141 k~l----------------------~~~~~~~~--kiI~~SATl-~~~~~~~~~~~~~~i~i~~~~---~pv~~~~~~~~ 192 (704)
..+ +...+.+. .++++|||. +...-..+|.+...+.+.... ..+...|....
T Consensus 233 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~~~~~~~ 312 (1171)
T TIGR01054 233 EKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVDVYVEDE 312 (1171)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccccccceEEEEEecc
Confidence 111 11122233 367789995 433222344333333443322 12333333221
Q ss_pred CcchHHHHHHHHHHHHccCCCCCEEEEeCCH---HHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCC
Q 005291 193 PTSYLESALKTAIDIHVREPEGDVLIFMTGQ---DDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPP 269 (704)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~---~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~ 269 (704)
+.. . .+..+.... ++.+||||++. +.++.+++.|.+. ++.+..+||+++. .+++.|
T Consensus 313 --~~~-~---~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~----------g~~a~~lhg~~~~----~~l~~F 371 (1171)
T TIGR01054 313 --DLK-E---TLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENH----------GVKAVAYHATKPK----EDYEKF 371 (1171)
T ss_pred --cHH-H---HHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhC----------CceEEEEeCCCCH----HHHHHH
Confidence 111 1 222222222 35789999998 9999999999764 7889999999972 678999
Q ss_pred CCCCcEEEEE----cccccccccCCC-eEEEEeCCcccccc
Q 005291 270 PPNCRRFIVS----TNIAETSLTVDG-VVYVIDCGYVKQRQ 305 (704)
Q Consensus 270 ~~g~~kIlva----Tniae~gidip~-v~~VId~g~~k~~~ 305 (704)
++|+.+|||| ||++++|||||+ |+|||++|.++.+.
T Consensus 372 r~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~~ 412 (1171)
T TIGR01054 372 AEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFKV 412 (1171)
T ss_pred HcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEEE
Confidence 9999999999 599999999999 89999999998754
No 82
>PRK14701 reverse gyrase; Provisional
Probab=99.91 E-value=3.8e-24 Score=262.21 Aligned_cols=310 Identities=13% Similarity=0.104 Sum_probs=196.6
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCC-ccCceeee
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV-RLGEEVGY 83 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~-~vg~~vg~ 83 (704)
..+..|.+++..+.+|++++++||||||||++...+..... ..+.+++++.|+++|+.|++.++...... ..+..+.+
T Consensus 79 ~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~ 157 (1638)
T PRK14701 79 EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-LKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVY 157 (1638)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-hcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEE
Confidence 35789999999999999999999999999974322222221 23568999999999999999988653321 01111211
Q ss_pred ---eeecccc-------cCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCC-----------HHHHHHHHHH
Q 005291 84 ---AIRFEDR-------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLN-----------TDILLGLVKR 142 (704)
Q Consensus 84 ---~~~~~~~-------~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~-----------~d~l~~llk~ 142 (704)
....... .....+|+|+|||.|.+.+.... ..++++|||||||+ .++ .+|...+...
T Consensus 158 ~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~-~~~i~~iVVDEAD~-ml~~~knid~~L~llGF~~e~~~~ 235 (1638)
T PRK14701 158 YHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK-HLKFDFIFVDDVDA-FLKASKNIDRSLQLLGFYEEIIEK 235 (1638)
T ss_pred EeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh-hCCCCEEEEECcee-ccccccccchhhhcCCChHHHHHH
Confidence 1111111 12347899999998887654322 26799999999994 432 1332222210
Q ss_pred ---HH----------------------HHhccCcE-EEEEecCCChH-HHhcccCCCCccccCCCcC---ceeEEecCCC
Q 005291 143 ---LV----------------------NLRASKLK-ILITSATLDGE-KVSKFFSNCPTLNVPGKLY---PVEILHSKER 192 (704)
Q Consensus 143 ---l~----------------------~~~~~~~k-iI~~SATl~~~-~~~~~~~~~~~i~i~~~~~---pv~~~~~~~~ 192 (704)
++ ...+...+ ++++|||+++. ....+|.+...+.+..... .+...|....
T Consensus 236 ~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~ 315 (1638)
T PRK14701 236 AWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSGRSALRNIVDVYLNPE 315 (1638)
T ss_pred HHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCCCCCCCCcEEEEEECC
Confidence 11 11122334 67799999753 3445555444444433221 1223332211
Q ss_pred CcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHH---HHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCC
Q 005291 193 PTSYLESALKTAIDIHVREPEGDVLIFMTGQDDI---EKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPP 269 (704)
Q Consensus 193 ~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i---~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~ 269 (704)
.+.. . .+..+.... +...||||++++.+ +.+++.|.+. ++.+..+||+ |..+++.|
T Consensus 316 -~~~k-~---~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~----------Gi~a~~~h~~-----R~~~l~~F 374 (1638)
T PRK14701 316 -KIIK-E---HVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED----------GFKIELVSAK-----NKKGFDLF 374 (1638)
T ss_pred -HHHH-H---HHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC----------CCeEEEecch-----HHHHHHHH
Confidence 1111 1 232332222 45789999998764 7888888764 8899999985 88899999
Q ss_pred CCCCcEEEEEc----ccccccccCCC-eEEEEeCCcccccc----ccCCCCccccccccccHHhHHhhccccCCC-CCce
Q 005291 270 PPNCRRFIVST----NIAETSLTVDG-VVYVIDCGYVKQRQ----YNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGK 339 (704)
Q Consensus 270 ~~g~~kIlvaT----niae~gidip~-v~~VId~g~~k~~~----~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~ 339 (704)
++|+.+||||| +++++|||+|+ |+|||+.|++|.+. |.+..... .. .....++.|||||. .++.
T Consensus 375 ~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~-----~~-~~~~~~~~~~a~~~g~~~~ 448 (1638)
T PRK14701 375 EEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRI-----LG-LLSEILKIEEELKEGIPIE 448 (1638)
T ss_pred HcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhh-----hc-chHHHHHhhhhcccCCcch
Confidence 99999999999 59999999999 99999999998552 22221110 00 22345778999998 4666
Q ss_pred EEEec
Q 005291 340 CYRLY 344 (704)
Q Consensus 340 c~~L~ 344 (704)
|+..+
T Consensus 449 ~~~~~ 453 (1638)
T PRK14701 449 GVLDV 453 (1638)
T ss_pred hHHHh
Confidence 75443
No 83
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=5e-24 Score=235.85 Aligned_cols=325 Identities=14% Similarity=0.154 Sum_probs=231.6
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
+-+..+|++.+..+..|..+.|.|+|.+|||..+...+.. ....+.+.+++.|.+++..|-++.+.+.++. +|
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAial-aq~h~TR~iYTSPIKALSNQKfRDFk~tF~D-vg----- 368 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIAL-AQKHMTRTIYTSPIKALSNQKFRDFKETFGD-VG----- 368 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHH-HHhhccceEecchhhhhccchHHHHHHhccc-cc-----
Confidence 4478899999999999999999999999999655433332 2234569999999999999999999888763 23
Q ss_pred eeecccccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC-C
Q 005291 84 AIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL-D 161 (704)
Q Consensus 84 ~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl-~ 161 (704)
-+..+....+...+++||+++|..++.... .++++..||+||+|- ++.--.--++..++-..|..+++|++|||. |
T Consensus 369 LlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHY--iND~eRGvVWEEViIMlP~HV~~IlLSATVPN 446 (1248)
T KOG0947|consen 369 LLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHY--INDVERGVVWEEVIIMLPRHVNFILLSATVPN 446 (1248)
T ss_pred eeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeee--cccccccccceeeeeeccccceEEEEeccCCC
Confidence 334466777889999999999999995544 789999999999992 222222233455555677799999999999 5
Q ss_pred hHHHhcccCCC-----CccccCCCcCceeEEecCCCC--------cchHHHH----------------------------
Q 005291 162 GEKVSKFFSNC-----PTLNVPGKLYPVEILHSKERP--------TSYLESA---------------------------- 200 (704)
Q Consensus 162 ~~~~~~~~~~~-----~~i~i~~~~~pv~~~~~~~~~--------~~~~~~~---------------------------- 200 (704)
...|+.|.|.. .|+....|..|++.++..... ..++...
T Consensus 447 ~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs 526 (1248)
T KOG0947|consen 447 TLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGS 526 (1248)
T ss_pred hHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccc
Confidence 56699999742 344555677887765432210 0011110
Q ss_pred ----------------------------HHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhh-------------
Q 005291 201 ----------------------------LKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRS------------- 239 (704)
Q Consensus 201 ----------------------------~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~------------- 239 (704)
.-.++.......--+++|||=+++.|++.++.|...--.
T Consensus 527 ~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~ 606 (1248)
T KOG0947|consen 527 QKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLS 606 (1248)
T ss_pred cccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHH
Confidence 001111111222347899999999999999998643100
Q ss_pred -----cCCC-----------CCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCcccc
Q 005291 240 -----LDEG-----------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQ 303 (704)
Q Consensus 240 -----~~~~-----------~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~ 303 (704)
+... ....-.+..+|||+-|--+.-|...|..|-+||++||-++++|||.|.-.+|+++ +.|
T Consensus 607 k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~S-l~K- 684 (1248)
T KOG0947|consen 607 KAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSS-LRK- 684 (1248)
T ss_pred HHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeee-hhh-
Confidence 0000 0012357889999999999999999999999999999999999999977777763 322
Q ss_pred ccccCCCCccccccccccHHhHHhhccccCCC---CCceEEEecCCc
Q 005291 304 RQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPST 347 (704)
Q Consensus 304 ~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~---~~G~c~~L~~~~ 347 (704)
+|...- .-+..-+|.|++|||||. ..|.++.+....
T Consensus 685 --hDG~ef------R~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 685 --HDGNEF------RELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred --ccCcce------eecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 343332 245677899999999998 469988887654
No 84
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.90 E-value=1.7e-23 Score=213.78 Aligned_cols=306 Identities=19% Similarity=0.185 Sum_probs=204.1
Q ss_pred HHHHHH-HHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCce---ee
Q 005291 9 YEETIV-ETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE---VG 82 (704)
Q Consensus 9 ~~~~il-~~l~~~~~vii~gpTGsGKT--t~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~---vg 82 (704)
+|++.+ -.+..++++.|+.|||+||| .|+|.++. +++.+|+.|..+|..++...+.. +.+.+... ..
T Consensus 24 LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------~gITIV~SPLiALIkDQiDHL~~-LKVp~~SLNSKlS 96 (641)
T KOG0352|consen 24 LQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------GGITIVISPLIALIKDQIDHLKR-LKVPCESLNSKLS 96 (641)
T ss_pred HHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------CCeEEEehHHHHHHHHHHHHHHh-cCCchhHhcchhh
Confidence 455444 44667889999999999999 77877664 45889999999999887776532 22221111 00
Q ss_pred eeee-----cccccCcccceEEcchHHHH-----HHHHhCCCCCCCceEEEeCCCcCC-CCHHHHHHH--HHHHHHHhcc
Q 005291 83 YAIR-----FEDRTSERTLIKYLTDGVLL-----REILSNPDLSPYSVIILDEAHERS-LNTDILLGL--VKRLVNLRAS 149 (704)
Q Consensus 83 ~~~~-----~~~~~~~~~~I~~~T~g~Ll-----~~l~~~~~l~~~~~IIiDEaHer~-l~~d~l~~l--lk~l~~~~~~ 149 (704)
-.-| .-....+.++++|.||++.. ..+..-..-..++++++||||+-+ +.-||.... |-.+....+
T Consensus 97 t~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~- 175 (641)
T KOG0352|consen 97 TVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCP- 175 (641)
T ss_pred HHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCC-
Confidence 0000 01123356789999998642 222222233457899999999833 223332222 234444555
Q ss_pred CcEEEEEecCCChHHHhcccC----CCCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHH-------------ccCC
Q 005291 150 KLKILITSATLDGEKVSKFFS----NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIH-------------VREP 212 (704)
Q Consensus 150 ~~kiI~~SATl~~~~~~~~~~----~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~-------------~~~~ 212 (704)
+...+.++||.+++.-.+.|. ..|+-.+....|.-..+|... -.+++...+..+.+.. ....
T Consensus 176 ~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~-~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~ 254 (641)
T KOG0352|consen 176 GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNH-MKSFITDCLTVLADFSSSNLGKHEKASQNKKTF 254 (641)
T ss_pred CCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHH-HHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCc
Confidence 899999999998765443331 223333333333333333211 0111111111111111 1122
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCe
Q 005291 213 EGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGV 292 (704)
Q Consensus 213 ~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v 292 (704)
.|--||||.|+++++.++-.|... ++....+|+||...||.+|.+.+-+++.-||+||+..++|||-|+|
T Consensus 255 ~GCGIVYCRTR~~cEq~AI~l~~~----------Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~V 324 (641)
T KOG0352|consen 255 TGCGIVYCRTRNECEQVAIMLEIA----------GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDV 324 (641)
T ss_pred CcceEEEeccHHHHHHHHHHhhhc----------CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcce
Confidence 478899999999999999988764 8899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccccc
Q 005291 293 VYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (704)
Q Consensus 293 ~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~~ 351 (704)
++||+.. + +.+.+-|.|..|||||. .+..|-..|++++.+.
T Consensus 325 RFViHW~--------~----------~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 325 RFVIHWS--------P----------SQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred eEEEecC--------c----------hhhhHHHHHhccccccCCCccceeeeecccchHH
Confidence 9999833 2 45778999999999999 5788888888887765
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.90 E-value=5.5e-23 Score=237.52 Aligned_cols=315 Identities=17% Similarity=0.173 Sum_probs=200.5
Q ss_pred CCchHHHHHHHHHhcc---CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCce
Q 005291 4 LPILQYEETIVETVEQ---NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (704)
Q Consensus 4 LPi~~~~~~il~~l~~---~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~ 80 (704)
..++..|+++++.+.+ ++++++.|+||||||......+.... ..+..++++.|+++++.|+++++.+.++..+...
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l-~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~ 221 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVL-AQGKQALVLVPEIALTPQMLARFRARFGAPVAVL 221 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEE
Confidence 3478899999999987 37899999999999944433333221 2367899999999999999999998887655444
Q ss_pred eeeeeecc------cccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHH-----HHHHHHHHHHHhcc
Q 005291 81 VGYAIRFE------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI-----LLGLVKRLVNLRAS 149 (704)
Q Consensus 81 vg~~~~~~------~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~-----l~~llk~l~~~~~~ 149 (704)
.|.....+ .......+|+++|++.+. ..+.++++|||||+|+.+...+- ... +....... .
T Consensus 222 ~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~-va~~ra~~-~ 293 (679)
T PRK05580 222 HSGLSDGERLDEWRKAKRGEAKVVIGARSALF------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD-LAVVRAKL-E 293 (679)
T ss_pred ECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc------ccccCCCEEEEECCCccccccCcCCCCcHHH-HHHHHhhc-c
Confidence 44211111 112235789999997653 24788999999999964433221 111 11122223 4
Q ss_pred CcEEEEEecCCChHHHhcccC-CCCccccCCCc----Cc-eeEEecCCC----CcchH-HHHHHHHHHHHccCCCCCEEE
Q 005291 150 KLKILITSATLDGEKVSKFFS-NCPTLNVPGKL----YP-VEILHSKER----PTSYL-ESALKTAIDIHVREPEGDVLI 218 (704)
Q Consensus 150 ~~kiI~~SATl~~~~~~~~~~-~~~~i~i~~~~----~p-v~~~~~~~~----~~~~~-~~~~~~~~~i~~~~~~g~iLV 218 (704)
+.++|++|||+..+.+..... ....+.++.+. .| +.+...... ....+ ...++.+.+.. +.+.++||
T Consensus 294 ~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l--~~g~qvll 371 (679)
T PRK05580 294 NIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRL--ERGEQVLL 371 (679)
T ss_pred CCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHH--HcCCeEEE
Confidence 889999999998776554321 22233333221 22 222221110 00011 11222222211 23457888
Q ss_pred EeCCHH------------------------------------------------------------HHHHHHHHHHHHhh
Q 005291 219 FMTGQD------------------------------------------------------------DIEKLVSKLEDKIR 238 (704)
Q Consensus 219 Fl~~~~------------------------------------------------------------~i~~~~~~L~~~~~ 238 (704)
|+|.+. .++++.+.|.+.+
T Consensus 372 ~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~f- 450 (679)
T PRK05580 372 FLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELF- 450 (679)
T ss_pred EEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhC-
Confidence 887532 4556666666553
Q ss_pred hcCCCCCCCeEEEeccCCCC--HHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccc
Q 005291 239 SLDEGSCMDAVILPLHGSLP--PEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLD 316 (704)
Q Consensus 239 ~~~~~~~~~~~v~~lh~~l~--~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~ 316 (704)
++..+..+|+++. .+++.++++.|++|+.+|||+|++++.|+|+|+|+.|+-.+ .|......++.
T Consensus 451 -------p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~------aD~~l~~pdfr 517 (679)
T PRK05580 451 -------PEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLD------ADLGLFSPDFR 517 (679)
T ss_pred -------CCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEc------CchhccCCccc
Confidence 5778999999986 46788999999999999999999999999999999885311 12222222232
Q ss_pred cccccHHhHHhhccccCCC-CCceEEEe
Q 005291 317 VVQISKVQANQRVGRAGRT-RPGKCYRL 343 (704)
Q Consensus 317 ~~~iS~~~~~QR~GRaGR~-~~G~c~~L 343 (704)
..--....+.|++|||||. .+|.|+..
T Consensus 518 a~Er~~~~l~q~~GRagR~~~~g~viiq 545 (679)
T PRK05580 518 ASERTFQLLTQVAGRAGRAEKPGEVLIQ 545 (679)
T ss_pred hHHHHHHHHHHHHhhccCCCCCCEEEEE
Confidence 2333467889999999996 78988843
No 86
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.90 E-value=1.2e-23 Score=243.93 Aligned_cols=305 Identities=18% Similarity=0.173 Sum_probs=213.6
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeee
Q 005291 8 QYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAI 85 (704)
Q Consensus 8 ~~~~~il~~l~~~~~vii~gpTGsGKT--t~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~ 85 (704)
..|.+++.++..|+.+.|..|||+||| .|+|.++. ++..+|+.|...|...+...+ ...++.....-+.+.
T Consensus 267 ~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~DQv~~L-~~~~I~a~~L~s~q~ 339 (941)
T KOG0351|consen 267 PNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQDQVTHL-SKKGIPACFLSSIQT 339 (941)
T ss_pred hhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------CCceEEeccHHHHHHHHHHhh-hhcCcceeecccccc
Confidence 457788889999999999999999999 78887765 458899999999999888877 233332211111111
Q ss_pred e------cccccC--cccceEEcchHHHHHH------HHhCCCCCCCceEEEeCCCcCCCC-HHHHHHH--HHHHHHHhc
Q 005291 86 R------FEDRTS--ERTLIKYLTDGVLLRE------ILSNPDLSPYSVIILDEAHERSLN-TDILLGL--VKRLVNLRA 148 (704)
Q Consensus 86 ~------~~~~~~--~~~~I~~~T~g~Ll~~------l~~~~~l~~~~~IIiDEaHer~l~-~d~l~~l--lk~l~~~~~ 148 (704)
. +..... ...+|+|+||+.+... +.......-+..+||||||+-+-. -||.... +..+....+
T Consensus 340 ~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~ 419 (941)
T KOG0351|consen 340 AAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFP 419 (941)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCC
Confidence 1 111112 2578999999977533 222222223889999999984322 2332221 233344444
Q ss_pred cCcEEEEEecCCChHHHh---cccC--CCCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCH
Q 005291 149 SKLKILITSATLDGEKVS---KFFS--NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQ 223 (704)
Q Consensus 149 ~~~kiI~~SATl~~~~~~---~~~~--~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 223 (704)
...+|.+|||.....-. +-++ ++.++.-.- -+-..+|.-.+..+ .+........+....+.+.+||+|.++
T Consensus 420 -~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sf--nR~NL~yeV~~k~~-~~~~~~~~~~~~~~~~~~s~IIYC~sr 495 (941)
T KOG0351|consen 420 -GVPFIALTATATERVREDVIRSLGLRNPELFKSSF--NRPNLKYEVSPKTD-KDALLDILEESKLRHPDQSGIIYCLSR 495 (941)
T ss_pred -CCCeEEeehhccHHHHHHHHHHhCCCCcceecccC--CCCCceEEEEeccC-ccchHHHHHHhhhcCCCCCeEEEeCCc
Confidence 68999999999654432 3232 344332211 11122221111111 122233333444556778999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCcccc
Q 005291 224 DDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQ 303 (704)
Q Consensus 224 ~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~ 303 (704)
.+++.++..|.+. ++...+||+||++.+|..|...|-.++.+|||||=+.++|||.|||+.||++++
T Consensus 496 ~~ce~vs~~L~~~----------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~l--- 562 (941)
T KOG0351|consen 496 KECEQVSAVLRSL----------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSL--- 562 (941)
T ss_pred chHHHHHHHHHHh----------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCC---
Confidence 9999999999886 677889999999999999999999999999999999999999999999999887
Q ss_pred ccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccccc
Q 005291 304 RQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (704)
Q Consensus 304 ~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~~ 351 (704)
|-|...|.|-+|||||. .+..|..+|+-.++..
T Consensus 563 ---------------Pks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~ 596 (941)
T KOG0351|consen 563 ---------------PKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISE 596 (941)
T ss_pred ---------------chhHHHHHHhccccCcCCCcceeEEecchhHHHH
Confidence 45888999999999999 6899999998887654
No 87
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.90 E-value=2.8e-24 Score=232.43 Aligned_cols=324 Identities=15% Similarity=0.188 Sum_probs=234.2
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeee
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~ 84 (704)
-+.++|...+..+.+++.++|+|.|.+|||..+...+... .....+|+++.|.++|..|-++.+..+++ .||...|
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~s-Lr~kQRVIYTSPIKALSNQKYREl~~EF~-DVGLMTG-- 204 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMS-LREKQRVIYTSPIKALSNQKYRELLEEFK-DVGLMTG-- 204 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHH-HHhcCeEEeeChhhhhcchhHHHHHHHhc-ccceeec--
Confidence 3789999999999999999999999999995554333332 23467999999999999999999999886 3455444
Q ss_pred eecccccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC-Ch
Q 005291 85 IRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL-DG 162 (704)
Q Consensus 85 ~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl-~~ 162 (704)
+-..+++.-.++||+++|..++.... .+..+.-||+||+| .+-|.+-.-- +..-+-..|.+.+.+++|||+ |+
T Consensus 205 ---DVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIH-YMRDkERGVV-WEETIIllP~~vr~VFLSATiPNA 279 (1041)
T KOG0948|consen 205 ---DVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIH-YMRDKERGVV-WEETIILLPDNVRFVFLSATIPNA 279 (1041)
T ss_pred ---ceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeeh-hcccccccee-eeeeEEeccccceEEEEeccCCCH
Confidence 33445677789999999999986554 78899999999999 3333322111 122222345689999999999 45
Q ss_pred HHHhcccC-----CCCccccCCCcCceeEEecCC----------CCcchHHHHHHHH-----------------------
Q 005291 163 EKVSKFFS-----NCPTLNVPGKLYPVEILHSKE----------RPTSYLESALKTA----------------------- 204 (704)
Q Consensus 163 ~~~~~~~~-----~~~~i~i~~~~~pv~~~~~~~----------~~~~~~~~~~~~~----------------------- 204 (704)
..|++|.. .|.++..+-|..|+..+..+. ....+-+..+...
T Consensus 280 ~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG 359 (1041)
T KOG0948|consen 280 RQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKG 359 (1041)
T ss_pred HHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccC
Confidence 56999984 477888888888887663321 1111222222222
Q ss_pred ---------------HHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhh------------------cCCCC--C----
Q 005291 205 ---------------IDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRS------------------LDEGS--C---- 245 (704)
Q Consensus 205 ---------------~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~------------------~~~~~--~---- 245 (704)
+.........+++||.=++++|+..+-.+.+..-+ +...+ .
T Consensus 360 ~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie 439 (1041)
T KOG0948|consen 360 GTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIE 439 (1041)
T ss_pred CcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHH
Confidence 12222233358999999999999998877543110 11110 0
Q ss_pred -----CCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccc
Q 005291 246 -----MDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQI 320 (704)
Q Consensus 246 -----~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~i 320 (704)
..-.|..+||||-|--+.-|.-.|.+|-+|+++||.+.+.|+|.|.-++|.- ..+.||... -.|+
T Consensus 440 ~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT----~~rKfDG~~------fRwi 509 (1041)
T KOG0948|consen 440 NILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT----AVRKFDGKK------FRWI 509 (1041)
T ss_pred HHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe----eccccCCcc------eeee
Confidence 1225778999999999988888999999999999999999999997666652 344566544 3699
Q ss_pred cHHhHHhhccccCCC---CCceEEEecCCc
Q 005291 321 SKVQANQRVGRAGRT---RPGKCYRLYPST 347 (704)
Q Consensus 321 S~~~~~QR~GRaGR~---~~G~c~~L~~~~ 347 (704)
|--+|+|+.|||||. ..|.|+.+..+.
T Consensus 510 ssGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 510 SSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cccceEEecccccccCCCCCceEEEEecCc
Confidence 999999999999998 469999998764
No 88
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=6.1e-23 Score=229.08 Aligned_cols=295 Identities=17% Similarity=0.181 Sum_probs=184.9
Q ss_pred EEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecc------cccCcccce
Q 005291 24 VVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFE------DRTSERTLI 97 (704)
Q Consensus 24 ii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~------~~~~~~~~I 97 (704)
++.||||||||.....++... ...++.++++.|++.++.|+++++.+.++..+....+.....+ .......+|
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~I 79 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILV 79 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence 468999999995544444332 2346789999999999999999998888765433322110000 111235689
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHH----HHHHHHHHHhccCcEEEEEecCCChHHHhcccCC-C
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILL----GLVKRLVNLRASKLKILITSATLDGEKVSKFFSN-C 172 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~----~llk~l~~~~~~~~kiI~~SATl~~~~~~~~~~~-~ 172 (704)
+++|...+. ..+.++++|||||.|+-+...+-.. .-+..+..... +.++|++|||+..+.+.....+ .
T Consensus 80 VVGTrsalf------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~-~~~vil~SATPsles~~~~~~g~~ 152 (505)
T TIGR00595 80 VIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKF-NCPVVLGSATPSLESYHNAKQKAY 152 (505)
T ss_pred EECChHHHc------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhc-CCCEEEEeCCCCHHHHHHHhcCCe
Confidence 999987653 1478899999999997444332110 00122223333 8999999999887766544322 1
Q ss_pred CccccC----CCcCc-eeEEecCCCC-cchH-HHHHHHHHHHHccCCCCCEEEEeCCHHH--------------------
Q 005291 173 PTLNVP----GKLYP-VEILHSKERP-TSYL-ESALKTAIDIHVREPEGDVLIFMTGQDD-------------------- 225 (704)
Q Consensus 173 ~~i~i~----~~~~p-v~~~~~~~~~-~~~~-~~~~~~~~~i~~~~~~g~iLVFl~~~~~-------------------- 225 (704)
..+..+ +...| +++....... ...+ ...++.+.+.. ..++++|||+|++.-
T Consensus 153 ~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l--~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~ 230 (505)
T TIGR00595 153 RLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTL--AAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDV 230 (505)
T ss_pred EEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHH--HcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCC
Confidence 122222 22222 2222211111 0111 22222222222 245689999887653
Q ss_pred ----------------------------------------HHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHH--h
Q 005291 226 ----------------------------------------IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQ--V 263 (704)
Q Consensus 226 ----------------------------------------i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r--~ 263 (704)
++++.+.|.+.+ ++..+..+|++++...+ .
T Consensus 231 ~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f--------p~~~v~~~d~d~~~~~~~~~ 302 (505)
T TIGR00595 231 SLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF--------PGARIARIDSDTTSRKGAHE 302 (505)
T ss_pred ceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhC--------CCCcEEEEecccccCccHHH
Confidence 566777776654 57889999999986655 7
Q ss_pred hccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEE
Q 005291 264 RVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYR 342 (704)
Q Consensus 264 ~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~ 342 (704)
++++.|++|+.+|||+|++++.|+|+|+|+.|+-.+ +|...+..++.-.--....+.|++|||||. .+|.++.
T Consensus 303 ~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~------aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 303 ALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD------ADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred HHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc------CcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence 899999999999999999999999999999885211 222222222322233567889999999996 6788873
No 89
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.89 E-value=2e-22 Score=220.83 Aligned_cols=301 Identities=16% Similarity=0.193 Sum_probs=210.1
Q ss_pred chHHHHHHHHHhccC------CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHh---CCc
Q 005291 6 ILQYEETIVETVEQN------PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL---GVR 76 (704)
Q Consensus 6 i~~~~~~il~~l~~~------~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~---~~~ 76 (704)
+...|+.++..|..+ -+=+++|.-|||||..+...++.. ...|..+....||.+||.|.+..+.+.+ |..
T Consensus 263 LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~a-i~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~ 341 (677)
T COG1200 263 LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAA-IEAGYQAALMAPTEILAEQHYESLRKWLEPLGIR 341 (677)
T ss_pred ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHH-HHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCe
Confidence 667777777776543 245899999999995544333332 3457789999999999999999887655 444
Q ss_pred cCceeeeeeec-------ccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc
Q 005291 77 LGEEVGYAIRF-------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (704)
Q Consensus 77 vg~~vg~~~~~-------~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~ 149 (704)
++-..|. +.. +...+...+|+|.|...+ +.+-.+.++.++|+||=|.-++.. -..+..+...
T Consensus 342 V~lLtG~-~kgk~r~~~l~~l~~G~~~ivVGTHALi----Qd~V~F~~LgLVIiDEQHRFGV~Q------R~~L~~KG~~ 410 (677)
T COG1200 342 VALLTGS-LKGKARKEILEQLASGEIDIVVGTHALI----QDKVEFHNLGLVIIDEQHRFGVHQ------RLALREKGEQ 410 (677)
T ss_pred EEEeecc-cchhHHHHHHHHHhCCCCCEEEEcchhh----hcceeecceeEEEEeccccccHHH------HHHHHHhCCC
Confidence 4444442 221 122345689999997544 344478899999999999322211 1122222221
Q ss_pred CcEEEEEecCCChHHH-hcccCCCC---ccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHH
Q 005291 150 KLKILITSATLDGEKV-SKFFSNCP---TLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (704)
Q Consensus 150 ~~kiI~~SATl~~~~~-~~~~~~~~---~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~ 225 (704)
...+++||||+=+..+ -..|++-. +-..|....|+.+...+....+.+ ++.+.... ..+.++-|.||-.++
T Consensus 411 ~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v---~e~i~~ei--~~GrQaY~VcPLIeE 485 (677)
T COG1200 411 NPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEV---YERIREEI--AKGRQAYVVCPLIEE 485 (677)
T ss_pred CCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHH---HHHHHHHH--HcCCEEEEEeccccc
Confidence 4789999999855444 35566533 345566668888887765433333 33332222 246789999998876
Q ss_pred HH--------HHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEe
Q 005291 226 IE--------KLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVID 297 (704)
Q Consensus 226 i~--------~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId 297 (704)
.+ .+++.|... .+++.+..+||.|+++++.+|++.|++|+.+|+|||.+.|-|||+|+.++.|-
T Consensus 486 SE~l~l~~a~~~~~~L~~~--------~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI 557 (677)
T COG1200 486 SEKLELQAAEELYEELKSF--------LPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI 557 (677)
T ss_pred cccchhhhHHHHHHHHHHH--------cccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE
Confidence 65 344444432 26888999999999999999999999999999999999999999999998885
Q ss_pred CCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCcc
Q 005291 298 CGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (704)
Q Consensus 298 ~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~ 348 (704)
+|+. ..-.++..|-.||+||. .++.|+.+|....
T Consensus 558 --------e~AE---------RFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 558 --------ENAE---------RFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred --------echh---------hhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 4443 23557889999999998 7899999996654
No 90
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.89 E-value=8.8e-22 Score=223.17 Aligned_cols=108 Identities=18% Similarity=0.123 Sum_probs=90.8
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCC
Q 005291 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD 290 (704)
Q Consensus 211 ~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip 290 (704)
..+.++||||++.+.++.++..|.+. ++....+||.+...++..+...+..| +|+||||+|++|+||+
T Consensus 422 ~~~~pvLIft~s~~~se~ls~~L~~~----------gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~ 489 (762)
T TIGR03714 422 ETGQPVLLITGSVEMSEIYSELLLRE----------GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIK 489 (762)
T ss_pred hCCCCEEEEECcHHHHHHHHHHHHHC----------CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCC
Confidence 44679999999999999999999875 77788899999999998888888776 7999999999999999
Q ss_pred ---------CeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccc
Q 005291 291 ---------GVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (704)
Q Consensus 291 ---------~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~ 349 (704)
++.+|++.. + |..... .||+||+||. .||.++.+.+.++.
T Consensus 490 l~~~v~~~GGL~vIit~~--------~----------ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 490 LGKGVAELGGLAVIGTER--------M----------ENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred CCccccccCCeEEEEecC--------C----------CCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 999999722 2 222333 7999999999 68999999876544
No 91
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.89 E-value=7.2e-22 Score=217.92 Aligned_cols=288 Identities=17% Similarity=0.201 Sum_probs=195.8
Q ss_pred CCchHHHHHHHHHhcc----CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCc--c
Q 005291 4 LPILQYEETIVETVEQ----NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR--L 77 (704)
Q Consensus 4 LPi~~~~~~il~~l~~----~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~--v 77 (704)
..++++|++.++++.. ++..+|+.|||+|||.+...++..... .+++++|++.++.|.++++....+.. +
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~----~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~ 110 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR----STLVLVPTKELLDQWAEALKKFLLLNDEI 110 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC----CEEEEECcHHHHHHHHHHHHHhcCCcccc
Confidence 4578999999999998 889999999999999887777776532 39999999999999998887777654 2
Q ss_pred CceeeeeeecccccCcccceEEcchHHHHHH-HHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcE-EEE
Q 005291 78 GEEVGYAIRFEDRTSERTLIKYLTDGVLLRE-ILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK-ILI 155 (704)
Q Consensus 78 g~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~-l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~k-iI~ 155 (704)
|..-| ..+......|.|+|...+.+. .+.......+++||+||||+...+. . +.+..... ... +++
T Consensus 111 g~~~~-----~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~--~----~~~~~~~~-~~~~~LG 178 (442)
T COG1061 111 GIYGG-----GEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS--Y----RRILELLS-AAYPRLG 178 (442)
T ss_pred ceecC-----ceeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH--H----HHHHHhhh-cccceee
Confidence 22222 111111156999999988886 3333344479999999999533222 2 23333333 344 999
Q ss_pred EecCCCh---HH---HhcccCCCCccccC-------CCcCceeEEecCCC-----CcchH------H-------------
Q 005291 156 TSATLDG---EK---VSKFFSNCPTLNVP-------GKLYPVEILHSKER-----PTSYL------E------------- 198 (704)
Q Consensus 156 ~SATl~~---~~---~~~~~~~~~~i~i~-------~~~~pv~~~~~~~~-----~~~~~------~------------- 198 (704)
+|||+.- .. +..+++ ..+..++ |-.-|......... ...|. .
T Consensus 179 LTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (442)
T COG1061 179 LTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAEN 257 (442)
T ss_pred eccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHH
Confidence 9999732 12 223332 2222222 33333332211110 00000 0
Q ss_pred ----------HHHHHHHHHHccC-CCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccC
Q 005291 199 ----------SALKTAIDIHVRE-PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFS 267 (704)
Q Consensus 199 ----------~~~~~~~~i~~~~-~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~ 267 (704)
.....+..+.... ...+++||+....++..++..+... +. +..+.+..+..+|..+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~----------~~-~~~it~~t~~~eR~~il~ 326 (442)
T COG1061 258 EARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAP----------GI-VEAITGETPKEEREAILE 326 (442)
T ss_pred HHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCC----------Cc-eEEEECCCCHHHHHHHHH
Confidence 0011111111111 3569999999999999999887542 44 788999999999999999
Q ss_pred CCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCCC
Q 005291 268 PPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRP 337 (704)
Q Consensus 268 ~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~ 337 (704)
.|+.|.+++||++.++..|+|+|++.++|- ....-|+..+.||+||.-|..+
T Consensus 327 ~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~------------------~~~t~S~~~~~Q~lGR~LR~~~ 378 (442)
T COG1061 327 RFRTGGIKVLVTVKVLDEGVDIPDADVLII------------------LRPTGSRRLFIQRLGRGLRPAE 378 (442)
T ss_pred HHHcCCCCEEEEeeeccceecCCCCcEEEE------------------eCCCCcHHHHHHHhhhhccCCC
Confidence 999999999999999999999999999994 2336689999999999999643
No 92
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=4.2e-23 Score=211.15 Aligned_cols=308 Identities=20% Similarity=0.189 Sum_probs=213.0
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCC--CCCcEEEEcchhhHHHHHHHHHHHHH---hCCccCcee
Q 005291 8 QYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGY--TKSGIIGVTQPRRVAAVSVARRVAQE---LGVRLGEEV 81 (704)
Q Consensus 8 ~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~~~--~~~~~ilv~~P~r~la~~~a~rva~~---~~~~vg~~v 81 (704)
+.|.+-++.+.+++.++-.+-|||||| .++.+++..+.. ..+.+.+++.|+|.|+.|..+-+.+. .+......+
T Consensus 46 piqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ 125 (529)
T KOG0337|consen 46 PIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLV 125 (529)
T ss_pred chhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhc
Confidence 445666788899999999999999999 444444443322 23458999999999999988766432 223333345
Q ss_pred eeeeecccc--cCcccceEEcchHHHHHHHHh-CCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEec
Q 005291 82 GYAIRFEDR--TSERTLIKYLTDGVLLREILS-NPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (704)
Q Consensus 82 g~~~~~~~~--~~~~~~I~~~T~g~Ll~~l~~-~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SA 158 (704)
|+.-..+.. ...+.+|+++|||.++..... +-.|+.+.+||+||++ |.+..+|... +..++...+.+.+.++|||
T Consensus 126 ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfemgfqeq-l~e~l~rl~~~~QTllfSa 203 (529)
T KOG0337|consen 126 GGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFEMGFQEQ-LHEILSRLPESRQTLLFSA 203 (529)
T ss_pred ccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHhhhhHHH-HHHHHHhCCCcceEEEEec
Confidence 543222221 235789999999998876533 2368899999999999 7777777666 5566666666889999999
Q ss_pred CCChHH--Hhcc-cCCCCccc--cCCCcCc-eeEEecCCCCcchHHHHHHHHHHHHc-cCCCCCEEEEeCCHHHHHHHHH
Q 005291 159 TLDGEK--VSKF-FSNCPTLN--VPGKLYP-VEILHSKERPTSYLESALKTAIDIHV-REPEGDVLIFMTGQDDIEKLVS 231 (704)
Q Consensus 159 Tl~~~~--~~~~-~~~~~~i~--i~~~~~p-v~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~g~iLVFl~~~~~i~~~~~ 231 (704)
|++... |++- +.++..+. ++.+.-+ ++..|...... .....++.+.. .-...+.+||+++...++-+..
T Consensus 204 tlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a----~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ 279 (529)
T KOG0337|consen 204 TLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKA----EKEAALLSILGGRIKDKQTIVFVATKHHVEYVRG 279 (529)
T ss_pred cCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccH----HHHHHHHHHHhccccccceeEEecccchHHHHHH
Confidence 998652 2221 11122222 1111111 11112111111 11222222221 1124579999999999999999
Q ss_pred HHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCC
Q 005291 232 KLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (704)
Q Consensus 232 ~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g 311 (704)
.|... ++.+-.+||+|.++.|..-+..|..++..++|.|++|.+|+|||...-||+..+
T Consensus 280 ll~~~----------g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~----------- 338 (529)
T KOG0337|consen 280 LLRDF----------GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDF----------- 338 (529)
T ss_pred HHHhc----------CCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccC-----------
Confidence 88875 777888999999999999999999999999999999999999999999999655
Q ss_pred ccccccccccHHhHHhhccccCCC-CCceEEEecCCccc
Q 005291 312 MYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (704)
Q Consensus 312 ~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~ 349 (704)
|.+..-|.||.||+.|. +.|..|.+...++.
T Consensus 339 -------p~~~klFvhRVgr~aragrtg~aYs~V~~~~~ 370 (529)
T KOG0337|consen 339 -------PPDDKLFVHRVGRVARAGRTGRAYSLVASTDD 370 (529)
T ss_pred -------CCCCceEEEEecchhhccccceEEEEEecccc
Confidence 22333456999999988 58999998765543
No 93
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=8.7e-22 Score=225.32 Aligned_cols=108 Identities=20% Similarity=0.157 Sum_probs=94.5
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccC--
Q 005291 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV-- 289 (704)
Q Consensus 212 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidi-- 289 (704)
.+.++||||++.+.++.++..|.+. ++.+..+||.+...++..+...+..| +|+||||+|++|+||
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~----------gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l 494 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEA----------GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKL 494 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHC----------CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCc
Confidence 4679999999999999999999875 78889999999988888888877766 799999999999999
Q ss_pred -CCeE-----EEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccc
Q 005291 290 -DGVV-----YVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (704)
Q Consensus 290 -p~v~-----~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~ 349 (704)
|+|. +||++.+ |.|...+.||+||+||. .+|.|+.+++.++.
T Consensus 495 ~~~V~~~GGL~VI~~d~------------------p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 495 GEGVHELGGLAVIGTER------------------MESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred ccccccccCcEEEeccC------------------CCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 7998 9998554 66788899999999999 68999998876543
No 94
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.88 E-value=2e-21 Score=223.94 Aligned_cols=294 Identities=19% Similarity=0.229 Sum_probs=215.7
Q ss_pred HHHHHhccCC--EEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeeccc
Q 005291 12 TIVETVEQNP--VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED 89 (704)
Q Consensus 12 ~il~~l~~~~--~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~ 89 (704)
++.+-+.+++ +=+|||.-|-|||-.+.......- ..|+.|.+++||..||.|.++.+.+.+.-. .-.|+.--||.+
T Consensus 605 eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV-~~GKQVAvLVPTTlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s 682 (1139)
T COG1197 605 EVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV-MDGKQVAVLVPTTLLAQQHYETFKERFAGF-PVRIEVLSRFRS 682 (1139)
T ss_pred HHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh-cCCCeEEEEcccHHhHHHHHHHHHHHhcCC-CeeEEEecccCC
Confidence 3344444554 458999999999966555555443 347899999999999999999998776422 223443444433
Q ss_pred c----------cCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecC
Q 005291 90 R----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (704)
Q Consensus 90 ~----------~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SAT 159 (704)
. .....+|++.|. +.+..+-.+.+++++||||=|.-++.. -.++...+. ++-++-||||
T Consensus 683 ~kE~~~il~~la~G~vDIvIGTH----rLL~kdv~FkdLGLlIIDEEqRFGVk~------KEkLK~Lr~-~VDvLTLSAT 751 (1139)
T COG1197 683 AKEQKEILKGLAEGKVDIVIGTH----RLLSKDVKFKDLGLLIIDEEQRFGVKH------KEKLKELRA-NVDVLTLSAT 751 (1139)
T ss_pred HHHHHHHHHHHhcCCccEEEech----HhhCCCcEEecCCeEEEechhhcCccH------HHHHHHHhc-cCcEEEeeCC
Confidence 2 234689999997 455667789999999999999434333 233333444 8999999999
Q ss_pred CChHHHhcccC---CCCccccC-CCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHH
Q 005291 160 LDGEKVSKFFS---NCPTLNVP-GKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLED 235 (704)
Q Consensus 160 l~~~~~~~~~~---~~~~i~i~-~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~ 235 (704)
+=+..+..-+. +-.++..| ...+||.++..+..+ ..+.++ +...+ .-+|++-...|..++|+++++.|++
T Consensus 752 PIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~-~~ireA---I~REl--~RgGQvfYv~NrV~~Ie~~~~~L~~ 825 (1139)
T COG1197 752 PIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDD-LLIREA---ILREL--LRGGQVFYVHNRVESIEKKAERLRE 825 (1139)
T ss_pred CCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCCh-HHHHHH---HHHHH--hcCCEEEEEecchhhHHHHHHHHHH
Confidence 85555543332 33444444 477999998776443 222222 22111 3478988889999999999999999
Q ss_pred HhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCcccc
Q 005291 236 KIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSL 315 (704)
Q Consensus 236 ~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l 315 (704)
.. |...|...||.|+..+-..++..|-+|+.+|+|||.|.|+|||||+.+.+|- .+.
T Consensus 826 LV--------PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII--------e~A------- 882 (1139)
T COG1197 826 LV--------PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII--------ERA------- 882 (1139)
T ss_pred hC--------CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE--------ecc-------
Confidence 85 7899999999999999999999999999999999999999999999998884 111
Q ss_pred ccccccHHhHHhhccccCCC-CCceEEEecCCccc
Q 005291 316 DVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (704)
Q Consensus 316 ~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~ 349 (704)
...-.++..|-.||+||. ..|.||.||+....
T Consensus 883 --D~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~ 915 (1139)
T COG1197 883 --DKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKA 915 (1139)
T ss_pred --ccccHHHHHHhccccCCccceEEEEEeecCccc
Confidence 123457889999999999 78999999986543
No 95
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=1.4e-21 Score=219.03 Aligned_cols=106 Identities=24% Similarity=0.197 Sum_probs=88.7
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCC--
Q 005291 213 EGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD-- 290 (704)
Q Consensus 213 ~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip-- 290 (704)
+.++||||++.++++.++..|.+. ++.+..+||.+...++..+...+. ...|+||||+|++|+||+
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~----------gi~~~~Lhg~~~~rE~~ii~~ag~--~g~VlVATdmAgRGtDI~l~ 540 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREA----------GLPHQVLNAKQDAEEAAIVARAGQ--RGRITVATNMAGRGTDIKLE 540 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHC----------CCCEEEeeCCcHHHHHHHHHHcCC--CCcEEEEccchhcccCcCCc
Confidence 468999999999999999999875 788999999987666655555544 446999999999999999
Q ss_pred -CeE-----EEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCcc
Q 005291 291 -GVV-----YVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (704)
Q Consensus 291 -~v~-----~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~ 348 (704)
+|. +||++.+ |.|...+.||+||+||. .+|.|+.+++.++
T Consensus 541 ~~V~~~GGLhVI~~d~------------------P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 541 PGVAARGGLHVILTER------------------HDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred cchhhcCCCEEEEcCC------------------CCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 776 9998554 56778889999999999 6899999987654
No 96
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.87 E-value=1.2e-20 Score=225.89 Aligned_cols=313 Identities=19% Similarity=0.282 Sum_probs=192.9
Q ss_pred CchHHHHHHHHHhc----c-CCEEEEEcCCCCcHHHHHHHHHHhc-CCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccC
Q 005291 5 PILQYEETIVETVE----Q-NPVVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLG 78 (704)
Q Consensus 5 Pi~~~~~~il~~l~----~-~~~vii~gpTGsGKTt~l~~~l~~~-~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg 78 (704)
....||.+.+..+. + .+..+|+.+||||||..+..++... ......+|++++||+.|+.|..+.+... +...+
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~-~~~~~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDT-KIEGD 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhc-ccccc
Confidence 45778988877664 2 3568889999999993333333322 2223469999999999999999887543 22111
Q ss_pred ceee--eeee--cccccCcccceEEcchHHHHHHHHhC------CCCCCCceEEEeCCCcCCCCHH-------H------
Q 005291 79 EEVG--YAIR--FEDRTSERTLIKYLTDGVLLREILSN------PDLSPYSVIILDEAHERSLNTD-------I------ 135 (704)
Q Consensus 79 ~~vg--~~~~--~~~~~~~~~~I~~~T~g~Ll~~l~~~------~~l~~~~~IIiDEaHer~l~~d-------~------ 135 (704)
..+. |.+. .+.......+|+|+|.+.+.+.+... +.+..+++||+|||| |+...| .
T Consensus 492 ~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~~~ 570 (1123)
T PRK11448 492 QTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRDQL 570 (1123)
T ss_pred cchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccchhh
Confidence 1110 1111 11112345789999999887765321 356789999999999 664211 0
Q ss_pred -HHHHHHHHHHHhccCcEEEEEecCCChHHHhcccCCCCcccc-------CCCcC----ceeEE---------ecCC---
Q 005291 136 -LLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNV-------PGKLY----PVEIL---------HSKE--- 191 (704)
Q Consensus 136 -l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~~~~~~~i~i-------~~~~~----pv~~~---------~~~~--- 191 (704)
.....+.++... +...|++|||+... ...+|+. ++... .|-.. |..+. +...
T Consensus 571 ~~~~~yr~iL~yF--dA~~IGLTATP~r~-t~~~FG~-pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~ 646 (1123)
T PRK11448 571 DYVSKYRRVLDYF--DAVKIGLTATPALH-TTEIFGE-PVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEV 646 (1123)
T ss_pred hHHHHHHHHHhhc--CccEEEEecCCccc-hhHHhCC-eeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchh
Confidence 123355565544 46789999998633 3455653 22110 11111 11111 0000
Q ss_pred --------------CCc--chHH--------------HHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcC
Q 005291 192 --------------RPT--SYLE--------------SALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLD 241 (704)
Q Consensus 192 --------------~~~--~~~~--------------~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~ 241 (704)
.+. .|.. ..+..+.+......++++||||.++++++.+++.|.+.+....
T Consensus 647 ~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~ 726 (1123)
T PRK11448 647 EVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKY 726 (1123)
T ss_pred hhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhc
Confidence 000 0100 0111222222223458999999999999999999887643221
Q ss_pred CCCCCCeEEEeccCCCCHHHHhhccCCCCCCCc-EEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccc
Q 005291 242 EGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCR-RFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQI 320 (704)
Q Consensus 242 ~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~-kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~i 320 (704)
.+ .....+..+||+.+ ++.++++.|+++.. +|+|+++++.+|+|+|.|..||. ...+-
T Consensus 727 ~~-~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf------------------~rpvk 785 (1123)
T PRK11448 727 GQ-VEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVF------------------LRRVR 785 (1123)
T ss_pred CC-cCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEE------------------ecCCC
Confidence 00 11234556888875 45678889988875 89999999999999999999995 22356
Q ss_pred cHHhHHhhccccCCCCC--ce-EEEec
Q 005291 321 SKVQANQRVGRAGRTRP--GK-CYRLY 344 (704)
Q Consensus 321 S~~~~~QR~GRaGR~~~--G~-c~~L~ 344 (704)
|...|+||+||+.|..+ |+ ++.++
T Consensus 786 S~~lf~QmIGRgtR~~~~~~K~~f~I~ 812 (1123)
T PRK11448 786 SRILYEQMLGRATRLCPEIGKTHFRIF 812 (1123)
T ss_pred CHHHHHHHHhhhccCCccCCCceEEEE
Confidence 89999999999999977 44 34444
No 97
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.87 E-value=6.6e-21 Score=214.73 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=97.7
Q ss_pred HHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEE
Q 005291 200 ALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVS 279 (704)
Q Consensus 200 ~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlva 279 (704)
.++.+...+ ..+.++||||++.+.++.+++.|.+. ++....+||. ..+|...+..+..+...|+||
T Consensus 394 i~~~i~~~~--~~grpvLV~t~si~~se~ls~~L~~~----------gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIA 459 (745)
T TIGR00963 394 VVDEIKERH--AKGQPVLVGTTSVEKSELLSNLLKER----------GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIA 459 (745)
T ss_pred HHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHc----------CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEE
Confidence 333443444 44679999999999999999999875 6777889998 678888888899999999999
Q ss_pred cccccccccCCC-------eEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccc
Q 005291 280 TNIAETSLTVDG-------VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (704)
Q Consensus 280 Tniae~gidip~-------v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~ 349 (704)
||+|++|+||+. ..+||.+.+ |.|...+.||.||+||. .||.+..+.+.++.
T Consensus 460 TnmAgRGtDI~l~~V~~~GGl~VI~t~~------------------p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 460 TNMAGRGTDIKLEEVKELGGLYVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred eccccCCcCCCccchhhcCCcEEEecCC------------------CCcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 999999999998 449997554 66888899999999999 68999888877654
No 98
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.84 E-value=6.3e-20 Score=184.94 Aligned_cols=270 Identities=20% Similarity=0.199 Sum_probs=177.5
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeee
Q 005291 7 LQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (704)
Q Consensus 7 ~~~~~~il~~l~~~~~vii~gpTGsGKT--t~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~ 84 (704)
.+.|.+.+.+...++.++++.|||.||| .++|.++. .+..+++.|...+..++.-.+. .+|......-.-.
T Consensus 96 rplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------dg~alvi~plislmedqil~lk-qlgi~as~lnans 168 (695)
T KOG0353|consen 96 RPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------DGFALVICPLISLMEDQILQLK-QLGIDASMLNANS 168 (695)
T ss_pred ChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------CCceEeechhHHHHHHHHHHHH-HhCcchhhccCcc
Confidence 3456667777788999999999999999 67776654 4678899999988877665553 3343221111100
Q ss_pred e-----ecc---cccCcccceEEcchHHHHH------HHHhCCCCCCCceEEEeCCCcCC-----CCHHH-HHHHHHHHH
Q 005291 85 I-----RFE---DRTSERTLIKYLTDGVLLR------EILSNPDLSPYSVIILDEAHERS-----LNTDI-LLGLVKRLV 144 (704)
Q Consensus 85 ~-----~~~---~~~~~~~~I~~~T~g~Ll~------~l~~~~~l~~~~~IIiDEaHer~-----l~~d~-l~~llk~l~ 144 (704)
. +.+ .......+++|.||+.+.. .+...-....+.+|-+||+|+.+ +.+|+ .+++++
T Consensus 169 ske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilk--- 245 (695)
T KOG0353|consen 169 SKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILK--- 245 (695)
T ss_pred cHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHH---
Confidence 0 000 0112346899999997643 23233356778899999999733 33443 333333
Q ss_pred HHhccCcEEEEEecCCChHHH---hcccCC--CCc----cccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCC
Q 005291 145 NLRASKLKILITSATLDGEKV---SKFFSN--CPT----LNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGD 215 (704)
Q Consensus 145 ~~~~~~~kiI~~SATl~~~~~---~~~~~~--~~~----i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~ 215 (704)
+..+ +..+|+++||.....+ .+.++- +-. ++-++-.| ++...+....+..+...+.+ .....+..
T Consensus 246 rqf~-~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~y--ev~qkp~n~dd~~edi~k~i---~~~f~gqs 319 (695)
T KOG0353|consen 246 RQFK-GAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKY--EVRQKPGNEDDCIEDIAKLI---KGDFAGQS 319 (695)
T ss_pred HhCC-CCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCcee--EeeeCCCChHHHHHHHHHHh---ccccCCCc
Confidence 4455 8899999999754432 222211 111 11111111 12222223334443332222 22233446
Q ss_pred EEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEE
Q 005291 216 VLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYV 295 (704)
Q Consensus 216 iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~V 295 (704)
-+|||-+++++++++..|... ++....+|+.|.|+++.-+-+.+..|++.|||||-..++|||-|+|++|
T Consensus 320 giiyc~sq~d~ekva~alkn~----------gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfv 389 (695)
T KOG0353|consen 320 GIIYCFSQKDCEKVAKALKNH----------GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFV 389 (695)
T ss_pred ceEEEeccccHHHHHHHHHhc----------CccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEE
Confidence 789999999999999999875 8888999999999999999999999999999999999999999999999
Q ss_pred EeCCccc
Q 005291 296 IDCGYVK 302 (704)
Q Consensus 296 Id~g~~k 302 (704)
|+-.++|
T Consensus 390 ihhsl~k 396 (695)
T KOG0353|consen 390 IHHSLPK 396 (695)
T ss_pred Eecccch
Confidence 9855544
No 99
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.84 E-value=5.4e-20 Score=214.73 Aligned_cols=307 Identities=20% Similarity=0.146 Sum_probs=180.8
Q ss_pred chHHHHHHHHHhc---cCC-EEEEEcCCCCcHHHHHHHHHHhcCCC---CCcEEEEcchhhHHHHHHHHHHHHHhCCcc-
Q 005291 6 ILQYEETIVETVE---QNP-VVVVIGETGSGKSTQLSQILHRHGYT---KSGIIGVTQPRRVAAVSVARRVAQELGVRL- 77 (704)
Q Consensus 6 i~~~~~~il~~l~---~~~-~vii~gpTGsGKTt~l~~~l~~~~~~---~~~~ilv~~P~r~la~~~a~rva~~~~~~v- 77 (704)
.++.|..+++.+. ... .+++.+|||+|||+....+....... ...+++.+.|.+.+..++++++....+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 4556666666554 334 88999999999995544443332222 466999999999999999999876554321
Q ss_pred -Cc-eeeeeee----cccc---c----C-----cccceEEcchHHHHHHHHhCC-CC----CCCceEEEeCCCcCCCCHH
Q 005291 78 -GE-EVGYAIR----FEDR---T----S-----ERTLIKYLTDGVLLREILSNP-DL----SPYSVIILDEAHERSLNTD 134 (704)
Q Consensus 78 -g~-~vg~~~~----~~~~---~----~-----~~~~I~~~T~g~Ll~~l~~~~-~l----~~~~~IIiDEaHer~l~~d 134 (704)
+. ..|.... .... . . .-..+.++|+-.......... .. -..+++|+||+|- +..+
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~--~~~~ 353 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL--YADE 353 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh--hccc
Confidence 11 1221110 0000 0 0 011222233322222111111 11 2347999999994 3333
Q ss_pred -HHHHHHHHHHHHhccCcEEEEEecCCChHH---HhcccCCCCccccCCCcCceeEEe--cCCCCcchHHHH--HHHHHH
Q 005291 135 -ILLGLVKRLVNLRASKLKILITSATLDGEK---VSKFFSNCPTLNVPGKLYPVEILH--SKERPTSYLESA--LKTAID 206 (704)
Q Consensus 135 -~l~~llk~l~~~~~~~~kiI~~SATl~~~~---~~~~~~~~~~i~i~~~~~pv~~~~--~~~~~~~~~~~~--~~~~~~ 206 (704)
.+..++..+......+.++|+||||+++.. +..+++....+.......|....+ ......+..... ......
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 433 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELI 433 (733)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcc
Confidence 333333333333334899999999998754 444443322222211111110000 000001111110 011111
Q ss_pred HHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCC----CCCCCcEEEEEccc
Q 005291 207 IHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSP----PPPNCRRFIVSTNI 282 (704)
Q Consensus 207 i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~----~~~g~~kIlvaTni 282 (704)
......+++++|.+||+..+.++++.|+... . .++.+||.+...+|.+.++. |..+.-.|+|||++
T Consensus 434 ~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~---------~-~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQV 503 (733)
T COG1203 434 SEEVKEGKKVLVIVNTVDRAIELYEKLKEKG---------P-KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQV 503 (733)
T ss_pred hhhhccCCcEEEEEecHHHHHHHHHHHHhcC---------C-CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeE
Confidence 2223456899999999999999999998762 2 79999999999999877763 24567899999999
Q ss_pred ccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCC---CceEEEecC
Q 005291 283 AETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYP 345 (704)
Q Consensus 283 ae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~---~G~c~~L~~ 345 (704)
.|.||||+ .+++| +.+.+..+.+||+||.+|.+ +|..|..-.
T Consensus 504 IEagvDid-fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 504 IEAGVDID-FDVLI--------------------TELAPIDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred EEEEeccc-cCeee--------------------ecCCCHHHHHHHHHHHhhcccccCCceeEeec
Confidence 99999998 66655 34566778899999999996 455554433
No 100
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.84 E-value=4.9e-20 Score=206.19 Aligned_cols=323 Identities=16% Similarity=0.214 Sum_probs=206.2
Q ss_pred hHHHHHHH--HHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHH---HhCCccCcee
Q 005291 7 LQYEETIV--ETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ---ELGVRLGEEV 81 (704)
Q Consensus 7 ~~~~~~il--~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~---~~~~~vg~~v 81 (704)
|..|.+-+ ..++++.++|...||+.|||...-.+++.........++.+.|-...+.+-...+.. ..|..+..
T Consensus 225 fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~-- 302 (1008)
T KOG0950|consen 225 FEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEE-- 302 (1008)
T ss_pred HHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcchh--
Confidence 44444433 356688999999999999996555444443333355667777766555555444432 33333322
Q ss_pred eeeeecccc-cCcccceEEcchH---HHHHHHHhCCCCCCCceEEEeCCCcCCCCHH---HHHHHHHHHHH-HhccCcEE
Q 005291 82 GYAIRFEDR-TSERTLIKYLTDG---VLLREILSNPDLSPYSVIILDEAHERSLNTD---ILLGLVKRLVN-LRASKLKI 153 (704)
Q Consensus 82 g~~~~~~~~-~~~~~~I~~~T~g---~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d---~l~~llk~l~~-~~~~~~ki 153 (704)
|.-++... ..+...+.++|.+ .+.+.++....+..++.||+||.|. ..+.. .+..++.+++- .+...+++
T Consensus 303 -y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhm-i~d~~rg~~lE~~l~k~~y~~~~~~~~i 380 (1008)
T KOG0950|consen 303 -YAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHM-IGDKGRGAILELLLAKILYENLETSVQI 380 (1008)
T ss_pred -hcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeee-eeccccchHHHHHHHHHHHhccccceeE
Confidence 22222222 2245678899977 4666667666788899999999993 22221 23444444443 33335789
Q ss_pred EEEecCC-ChHHHhcccCCCCccccCCCcCceeEEecCCCCcch---HHHHHHHHHH---HH--------------ccCC
Q 005291 154 LITSATL-DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSY---LESALKTAID---IH--------------VREP 212 (704)
Q Consensus 154 I~~SATl-~~~~~~~~~~~~~~i~i~~~~~pv~~~~~~~~~~~~---~~~~~~~~~~---i~--------------~~~~ 212 (704)
|+||||+ |...++.|++ +.+....-|+.|...+.... ..-| -...+..+-. .. ..-+
T Consensus 381 IGMSATi~N~~lL~~~L~-A~~y~t~fRPv~L~E~ik~G-~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~ 458 (1008)
T KOG0950|consen 381 IGMSATIPNNSLLQDWLD-AFVYTTRFRPVPLKEYIKPG-SLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAP 458 (1008)
T ss_pred eeeecccCChHHHHHHhh-hhheecccCcccchhccCCC-cccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhh
Confidence 9999999 5567888885 33333333433332222111 0000 1111111110 00 0111
Q ss_pred -CCCEEEEeCCHHHHHHHHHHHHHHhhhc----------------------CCC------CCCCeEEEeccCCCCHHHHh
Q 005291 213 -EGDVLIFMTGQDDIEKLVSKLEDKIRSL----------------------DEG------SCMDAVILPLHGSLPPEMQV 263 (704)
Q Consensus 213 -~g~iLVFl~~~~~i~~~~~~L~~~~~~~----------------------~~~------~~~~~~v~~lh~~l~~~~r~ 263 (704)
+..+|||||++..++.++..+....... +.. ......+.++|+|++.++|.
T Consensus 459 e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~ 538 (1008)
T KOG0950|consen 459 EGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEERE 538 (1008)
T ss_pred cCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHH
Confidence 2359999999999999987775443210 000 12356789999999999999
Q ss_pred hccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC---CCceE
Q 005291 264 RVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKC 340 (704)
Q Consensus 264 ~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~---~~G~c 340 (704)
.|...|++|...|++||+++..|++.|..+|+|-.-+ ......+..+|.||+|||||+ .-|.+
T Consensus 539 ~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~--------------~g~~~l~~~~YkQM~GRAGR~gidT~Gds 604 (1008)
T KOG0950|consen 539 IIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPY--------------VGREFLTRLEYKQMVGRAGRTGIDTLGDS 604 (1008)
T ss_pred HHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCc--------------cccchhhhhhHHhhhhhhhhcccccCcce
Confidence 9999999999999999999999999999999985322 334567889999999999999 46899
Q ss_pred EEecCCccc
Q 005291 341 YRLYPSTVY 349 (704)
Q Consensus 341 ~~L~~~~~~ 349 (704)
+.++.+.+.
T Consensus 605 iLI~k~~e~ 613 (1008)
T KOG0950|consen 605 ILIIKSSEK 613 (1008)
T ss_pred EEEeeccch
Confidence 999877664
No 101
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.80 E-value=5.3e-20 Score=165.16 Aligned_cols=110 Identities=36% Similarity=0.590 Sum_probs=79.3
Q ss_pred HHHHHHHHHhcCCCccc----ccccccccchhhHHHHHHHHHhhcchhhhhhhcCCCceeEecccCCeEEECCCCCCCCc
Q 005291 527 KQLCQIMQKIAKGSLDV----RANHIWKESRQDYRKLRKALCVGYANQLAERMIHHNGYRTLGFKPQLVQVHPSSELKTD 602 (704)
Q Consensus 527 ~ql~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~g~~~~va~~~~~~~~y~~~~~~~~~~~ihpsS~l~~~ 602 (704)
+||.++|++.|....+. ......+.+..+++.|++|||+|||+|||++..+ +.|++. ..+..++|||+|+++
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~-~~y~~~-~~~~~v~iHPsS~l~-- 76 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNK-GSYKTL-SNGQPVFIHPSSVLF-- 76 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TT-SSEEET-TTG-EEEE-TTSTTT--
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCC-CCEEEe-cCCCEEEEecCcccc--
Confidence 58999998886322110 0000111222567899999999999999998854 789998 567799999999996
Q ss_pred CCCCCCCEEEEEeecccccchhhhccccCHhhHHHHhccc
Q 005291 603 EEGLLPNYVVYHELIATSRPYMRNVCAVEMQWVMPILKKL 642 (704)
Q Consensus 603 ~~~~~~~~ivy~e~~~t~~~~~r~~~~i~~~wl~~~~~~~ 642 (704)
+.+|+||||+|++.|+|.|||+||+|+|+||.+++|++
T Consensus 77 --~~~p~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~~~~ 114 (114)
T PF07717_consen 77 --KKPPKWVVYHELVRTSKPYMRDVTAISPEWLLLFAPHY 114 (114)
T ss_dssp --TTT-SEEEEEEEEESSSEEEEEEEE--HHHHHHH-TTT
T ss_pred --ccccccchhhhheecCCcEEEECcCCCHHHHHHHcccC
Confidence 56789999999999999999999999999999999985
No 102
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.80 E-value=4e-18 Score=200.06 Aligned_cols=313 Identities=15% Similarity=0.198 Sum_probs=191.8
Q ss_pred CchHHHHHHHHHhcc--CCEEEEEcCCCCcHHHHHHHHHHhcCC-CCCcEEEEcchhhHHHHHHHHHHHHHhCCccCcee
Q 005291 5 PILQYEETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (704)
Q Consensus 5 Pi~~~~~~il~~l~~--~~~vii~gpTGsGKTt~l~~~l~~~~~-~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~v 81 (704)
-+++||-.+...+.. ...+++.-+.|-|||-+.-.++..... ....+++|++|. .+..|....+.+.++..... +
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i-~ 229 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSL-F 229 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEE-E
Confidence 366788888766533 345788899999999666555544322 234589999996 67788888887777654321 1
Q ss_pred eee----eeccc-ccCcccceEEcchHHHHHH--HHhCCCCCCCceEEEeCCCcCCCC---HHHHHHHHHHHHHHhccCc
Q 005291 82 GYA----IRFED-RTSERTLIKYLTDGVLLRE--ILSNPDLSPYSVIILDEAHERSLN---TDILLGLVKRLVNLRASKL 151 (704)
Q Consensus 82 g~~----~~~~~-~~~~~~~I~~~T~g~Ll~~--l~~~~~l~~~~~IIiDEaHer~l~---~d~l~~llk~l~~~~~~~~ 151 (704)
+.. ...+. ..-...+++++|.+.+.+. ......-..+++||+||||.-... ..-....++.+... -.
T Consensus 230 ~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~---~~ 306 (956)
T PRK04914 230 DEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEV---IP 306 (956)
T ss_pred cCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhc---cC
Confidence 100 00000 1112467899998877651 111112247899999999952211 11123334443322 34
Q ss_pred EEEEEecCCChHHHhcc-----------cCC-----------CCc---cc--cCCC------------------------
Q 005291 152 KILITSATLDGEKVSKF-----------FSN-----------CPT---LN--VPGK------------------------ 180 (704)
Q Consensus 152 kiI~~SATl~~~~~~~~-----------~~~-----------~~~---i~--i~~~------------------------ 180 (704)
.++++|||+-.....++ |++ .++ +. ..+.
T Consensus 307 ~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~ 386 (956)
T PRK04914 307 GVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQ 386 (956)
T ss_pred CEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHh
Confidence 68999999832111110 100 000 00 0000
Q ss_pred ---------------------------------------cCceeEEec--CCCCcchHH---------------------
Q 005291 181 ---------------------------------------LYPVEILHS--KERPTSYLE--------------------- 198 (704)
Q Consensus 181 ---------------------------------------~~pv~~~~~--~~~~~~~~~--------------------- 198 (704)
.+|...... -..+..|..
T Consensus 387 ~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~~ 466 (956)
T PRK04914 387 AANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIYQ 466 (956)
T ss_pred hhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHHH
Confidence 011110000 000111211
Q ss_pred ------------HHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhcc
Q 005291 199 ------------SALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVF 266 (704)
Q Consensus 199 ------------~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~ 266 (704)
..++.+.++.......++||||+++..+..+.+.|... .++.+..+||+|+..+|.+++
T Consensus 467 ~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~---------~Gi~~~~ihG~~s~~eR~~~~ 537 (956)
T PRK04914 467 EFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER---------EGIRAAVFHEGMSIIERDRAA 537 (956)
T ss_pred HHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc---------cCeeEEEEECCCCHHHHHHHH
Confidence 11223344444445679999999999999999999654 378899999999999999999
Q ss_pred CCCCC--CCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCC-Cc--eEE
Q 005291 267 SPPPP--NCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR-PG--KCY 341 (704)
Q Consensus 267 ~~~~~--g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~-~G--~c~ 341 (704)
+.|.+ |..+|+|||+++++|+|++.+++||++++ |-+...+.||+||+||.+ .| .+|
T Consensus 538 ~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDl------------------P~nP~~~eQRIGR~~RiGQ~~~V~i~ 599 (956)
T PRK04914 538 AYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDL------------------PFNPDLLEQRIGRLDRIGQKHDIQIH 599 (956)
T ss_pred HHHhcCCCCccEEEechhhccCCCcccccEEEEecC------------------CCCHHHHHHHhcccccCCCCceEEEE
Confidence 99987 46999999999999999999999998443 567778889999999983 33 455
Q ss_pred EecCCccc
Q 005291 342 RLYPSTVY 349 (704)
Q Consensus 342 ~L~~~~~~ 349 (704)
.++.+...
T Consensus 600 ~~~~~~t~ 607 (956)
T PRK04914 600 VPYLEGTA 607 (956)
T ss_pred EccCCCCH
Confidence 55555433
No 103
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.77 E-value=5.5e-19 Score=154.65 Aligned_cols=95 Identities=36% Similarity=0.630 Sum_probs=68.6
Q ss_pred HHHHHHHHcccccCCCCCCHHHHHHhcCCCChHhHHHHHHhhhcCCHHHHHHHHHHhccCCcccCCCCchHHHH--hhcC
Q 005291 399 DALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGRSKSTEKK--RKHT 476 (704)
Q Consensus 399 ~al~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~--~~~~ 476 (704)
+|++.|+.+||||++|+||++|+.|+.||++|++||||+.|..++|.+++++|||+||++++|..+.++.+..+ ..+.
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~ 80 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKK 80 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999765444332 2333
Q ss_pred CCC-----CCCCCCCCCHHHHH
Q 005291 477 PLE-----LPDGSGWGDHIQLL 493 (704)
Q Consensus 477 ~~~-----~~~~~~~~D~~~~l 493 (704)
+|. ....+..|||+++|
T Consensus 81 ~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 81 KFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp TT----------BTTBHHHHHH
T ss_pred HhhhhhcccccCCCCCCHHhcC
Confidence 331 01137889999986
No 104
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.77 E-value=1.8e-20 Score=206.17 Aligned_cols=447 Identities=7% Similarity=-0.145 Sum_probs=339.3
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCC----CcEEEEcchhhHHHHHHHHHHHHHhCCccCc
Q 005291 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTK----SGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~----~~~ilv~~P~r~la~~~a~rva~~~~~~vg~ 79 (704)
+|..++.+.|++++..+.+.++-+.|||||+++.++.+.+.-..+ -+.++..+||+..|...+.+..-+.++.++.
T Consensus 405 gk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvll 484 (1282)
T KOG0921|consen 405 GKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLL 484 (1282)
T ss_pred cchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeeeccchhh
Confidence 688999999999999999999999999999999999988764432 3478889999999999988887777777777
Q ss_pred eeeeeeeccccc-CcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEec
Q 005291 80 EVGYAIRFEDRT-SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (704)
Q Consensus 80 ~vg~~~~~~~~~-~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SA 158 (704)
..+|..++.... .....+..+|.+.+++.+..+ +......+.||.|++++|+|++..++..+ .++.++++
T Consensus 485 r~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~-------p~~~~~gr 555 (1282)
T KOG0921|consen 485 RMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI-------PDVTVHGR 555 (1282)
T ss_pred hhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc-------cceeeccc
Confidence 777776665433 344556678999888887654 45677889999999999999988766543 35689999
Q ss_pred CCChHHHhcccCCCCccccCCCcCceeEEe------------------------c------------CCCCcchHHHHHH
Q 005291 159 TLDGEKVSKFFSNCPTLNVPGKLYPVEILH------------------------S------------KERPTSYLESALK 202 (704)
Q Consensus 159 Tl~~~~~~~~~~~~~~i~i~~~~~pv~~~~------------------------~------------~~~~~~~~~~~~~ 202 (704)
|+|...|-.++-.++...++++.+++.-.+ . ........+..+.
T Consensus 556 t~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~ 635 (1282)
T KOG0921|consen 556 TFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLN 635 (1282)
T ss_pred cccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHh
Confidence 999888776666777777777666543221 0 0112344444443
Q ss_pred HHHH------HHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEE
Q 005291 203 TAID------IHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRF 276 (704)
Q Consensus 203 ~~~~------i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kI 276 (704)
.+.. +..-.+++..|+|++++.-+......+... .-+ .+....+.+.|..+...++..+++....+.++.
T Consensus 636 ~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y-~il---p~Hsq~~~~eqrkvf~~~p~gv~kii~stniae 711 (1282)
T KOG0921|consen 636 DIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKY-EIL---PLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAE 711 (1282)
T ss_pred hhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhc-ccc---cchhhcccHhhhhccCcccccccccccccceee
Confidence 3322 223357889999999999888887777654 111 124567888999999999999999999999999
Q ss_pred EEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCCCceEEEecCCccccccCCCC
Q 005291 277 IVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDV 356 (704)
Q Consensus 277 lvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~~~~~~~~~ 356 (704)
+..|+..++.|.+.++.+|++++-.+.+.+....-++.....+-+.-...||.|||+|...+.||.++....+.. |.-+
T Consensus 712 tsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~e-m~r~ 790 (1282)
T KOG0921|consen 712 TSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAE-MFRT 790 (1282)
T ss_pred EeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHh-hhcC
Confidence 999999999999999999999999998888877777777788888888899999999999999999999999987 9999
Q ss_pred CCCccccCChHHHHHhhcccCccccccccccCCCCCCHHHHHHHHHHHHHcccccCCCCCCHHHHHHhcCCCChHhHHHH
Q 005291 357 TVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRML 436 (704)
Q Consensus 357 ~~pei~r~~l~~~~L~l~~l~~~~~~~~~~~~~~~P~~~~l~~al~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~~~l 436 (704)
+.|||.++.....++.++.+-...+.....+.+.+|+......+.-.+....+.+..-.+|++|+-....|+.|..+++.
T Consensus 791 plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~ 870 (1282)
T KOG0921|consen 791 PLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPLGRMLARLPIEPRIGKMMILGTALGA 870 (1282)
T ss_pred ccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccchhhhhhhccCcccccceeeechhhcc
Confidence 99999999877666666655444411233345666666555544444444444444456889999999999999999998
Q ss_pred HHhhhcCCHHHHHHHHHHhccCCcccCC
Q 005291 437 MEANEFGCLSQALTVAAMLSAETTLLPG 464 (704)
Q Consensus 437 l~~~~~~c~~~~l~i~a~ls~~~~f~~~ 464 (704)
...+.+-..+...++++.--...+|...
T Consensus 871 ~~~m~~~as~~s~~~~~~~~~~~~~rl~ 898 (1282)
T KOG0921|consen 871 GSVMCDVASAMSFPTPFVPREKHHSRLS 898 (1282)
T ss_pred chhhhhhhcccccccccccccccccccc
Confidence 8777665555555565554445555443
No 105
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=5.1e-17 Score=185.07 Aligned_cols=108 Identities=20% Similarity=0.206 Sum_probs=94.0
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccC-
Q 005291 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV- 289 (704)
Q Consensus 211 ~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidi- 289 (704)
..+.++||||+++..++.++..|.+. ++....+|+.+...++..+...+++|. |+||||+|++|.||
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~----------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~ 505 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEA----------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIK 505 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHC----------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCC
Confidence 45679999999999999999999875 677788999999888888888888776 99999999999999
Q ss_pred --CCeE-----EEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCcc
Q 005291 290 --DGVV-----YVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (704)
Q Consensus 290 --p~v~-----~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~ 348 (704)
++|. +||.+.+ |.|...+.||.||+||. .||.+..+.+-++
T Consensus 506 l~~~V~~~GGLhVI~te~------------------pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 506 LGPGVKELGGLAVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred CCcchhhhCCcEEEeeec------------------CCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 4899 9997543 66888899999999999 6899988887664
No 106
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.1e-16 Score=183.16 Aligned_cols=136 Identities=15% Similarity=0.148 Sum_probs=93.5
Q ss_pred HHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEE
Q 005291 199 SALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIV 278 (704)
Q Consensus 199 ~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlv 278 (704)
+.++.+...| ..+.++||||++.+..+.+++.|.+. ++....+|+.+...++..+.+.+++| .|+|
T Consensus 432 av~~~i~~~~--~~g~PVLVgt~Sie~sE~ls~~L~~~----------gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtI 497 (896)
T PRK13104 432 AIIEDVRECG--VRKQPVLVGTVSIEASEFLSQLLKKE----------NIKHQVLNAKFHEKEAQIIAEAGRPG--AVTI 497 (896)
T ss_pred HHHHHHHHHH--hCCCCEEEEeCcHHHHHHHHHHHHHc----------CCCeEeecCCCChHHHHHHHhCCCCC--cEEE
Confidence 3444444444 45679999999999999999999875 78888999999999999999999999 4999
Q ss_pred EcccccccccCCC---eEE-EEeC--Ccc-------------ccccccCCCCcccccc-ccccHHhHHhhccccCCC-CC
Q 005291 279 STNIAETSLTVDG---VVY-VIDC--GYV-------------KQRQYNPSSGMYSLDV-VQISKVQANQRVGRAGRT-RP 337 (704)
Q Consensus 279 aTniae~gidip~---v~~-VId~--g~~-------------k~~~~~~~~g~~~l~~-~~iS~~~~~QR~GRaGR~-~~ 337 (704)
|||+|++|+||.= ..+ +.+. +-. ....--...|+..+.+ .+.|.--=.|-.|||||+ .|
T Consensus 498 ATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDP 577 (896)
T PRK13104 498 ATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDP 577 (896)
T ss_pred eccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCC
Confidence 9999999999851 000 0000 000 0000001234444443 345665567999999999 58
Q ss_pred ceEEEecCCcc
Q 005291 338 GKCYRLYPSTV 348 (704)
Q Consensus 338 G~c~~L~~~~~ 348 (704)
|.+-.+.|-++
T Consensus 578 Gss~f~lSleD 588 (896)
T PRK13104 578 GSSRFYLSLED 588 (896)
T ss_pred CceEEEEEcCc
Confidence 87665555443
No 107
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.73 E-value=2.8e-17 Score=158.18 Aligned_cols=274 Identities=17% Similarity=0.192 Sum_probs=169.4
Q ss_pred HHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCCCCCc-EEEEcchhhHHHHHHHHH---HHHHhC-CccCceee
Q 005291 9 YEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTKSG-IIGVTQPRRVAAVSVARR---VAQELG-VRLGEEVG 82 (704)
Q Consensus 9 ~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~~~~~~~-~ilv~~P~r~la~~~a~r---va~~~~-~~vg~~vg 82 (704)
.|.+-++..--|-.++..|.+|-||| .++..-+....+..|. .+++.+.+|++|-|+.+. +++.+. ..+.-..|
T Consensus 68 vqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfG 147 (387)
T KOG0329|consen 68 VQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFG 147 (387)
T ss_pred hhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEc
Confidence 34444444445677899999999999 4444455554444343 788899999999999765 444443 22222222
Q ss_pred -eeeecccc-cCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecC
Q 005291 83 -YAIRFEDR-TSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (704)
Q Consensus 83 -~~~~~~~~-~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SAT 159 (704)
..+.-+.. ...-++|+++|||.++....+.. .+.++.+.|+||++...-..|.... +..+.+..|.+.++..+|||
T Consensus 148 G~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRD-vQEifr~tp~~KQvmmfsat 226 (387)
T KOG0329|consen 148 GLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRD-VQEIFRMTPHEKQVMMFSAT 226 (387)
T ss_pred ceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHH-HHHHhhcCcccceeeeeeee
Confidence 12222221 12357899999999998886554 7999999999999942222233333 56677777778999999999
Q ss_pred CChHH---HhcccCCCCccccCCC----cCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHH
Q 005291 160 LDGEK---VSKFFSNCPTLNVPGK----LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (704)
Q Consensus 160 l~~~~---~~~~~~~~~~i~i~~~----~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~ 232 (704)
++.+. ..+|+.++--+.+... .+.+..+|......+ .-..+.++...-.-.+++||+.+...+
T Consensus 227 lskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~e----KNrkl~dLLd~LeFNQVvIFvKsv~Rl------ 296 (387)
T KOG0329|consen 227 LSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENE----KNRKLNDLLDVLEFNQVVIFVKSVQRL------ 296 (387)
T ss_pred cchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhh----hhhhhhhhhhhhhhcceeEeeehhhhh------
Confidence 97653 3455544333333221 111222222111100 111122222222335778887664320
Q ss_pred HHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCc
Q 005291 233 LEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGM 312 (704)
Q Consensus 233 L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~ 312 (704)
+ | ..+ +|||++..+|+||.-|+.|+|+++
T Consensus 297 -------------------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYdm------------ 325 (387)
T KOG0329|consen 297 -------------------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDM------------ 325 (387)
T ss_pred -------------------------h----------h---hhh-hHHhhhhccccCcccceeeeccCC------------
Confidence 0 1 123 899999999999999999999554
Q ss_pred cccccccccHHhHHhhccccCCC-CCceEEEecCCcccc
Q 005291 313 YSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (704)
Q Consensus 313 ~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~ 350 (704)
|-+..+|.||.|||||. ..|..+.+.+.+.-.
T Consensus 326 ------p~~~DtYlHrv~rAgrfGtkglaitfvs~e~da 358 (387)
T KOG0329|consen 326 ------PEDSDTYLHRVARAGRFGTKGLAITFVSDENDA 358 (387)
T ss_pred ------CCCchHHHHHhhhhhccccccceeehhcchhhH
Confidence 45667788999999999 568888887665443
No 108
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.72 E-value=6.6e-17 Score=180.15 Aligned_cols=161 Identities=19% Similarity=0.225 Sum_probs=110.2
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCC-CCCcEEEEcchhhHHHHHHHHHHHHHhCCc-c--Cce-
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVR-L--GEE- 80 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~-~~~~~ilv~~P~r~la~~~a~rva~~~~~~-v--g~~- 80 (704)
-..+|.+.++.+..++.++|++||.+|||.+-+.++..... ...+.++++.|+++++.|++..+...++.. + |..
T Consensus 512 Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl 591 (1330)
T KOG0949|consen 512 PDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSL 591 (1330)
T ss_pred CcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhh
Confidence 34688999999999999999999999998544444333222 346789999999999999988875555321 1 111
Q ss_pred eeeeeecccccCcccceEEcchHHHHHHHHhCC----CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEE
Q 005291 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNP----DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (704)
Q Consensus 81 vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~----~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~ 156 (704)
.|.-.+.-+...-+++|.++-|+.+...+.+.| +..++.+||+||+|..+-..|.+. ...++... .+.++++
T Consensus 592 ~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~--~Eqll~li--~CP~L~L 667 (1330)
T KOG0949|consen 592 LGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLL--WEQLLLLI--PCPFLVL 667 (1330)
T ss_pred HhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchH--HHHHHHhc--CCCeeEE
Confidence 121111112223468999999999988887643 788999999999995333222211 22233222 5889999
Q ss_pred ecCC-ChHHHhcccC
Q 005291 157 SATL-DGEKVSKFFS 170 (704)
Q Consensus 157 SATl-~~~~~~~~~~ 170 (704)
|||+ |++.+..|++
T Consensus 668 SATigN~~l~qkWln 682 (1330)
T KOG0949|consen 668 SATIGNPNLFQKWLN 682 (1330)
T ss_pred ecccCCHHHHHHHHH
Confidence 9999 6777888874
No 109
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=2e-16 Score=181.03 Aligned_cols=126 Identities=15% Similarity=0.095 Sum_probs=89.5
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCC
Q 005291 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD 290 (704)
Q Consensus 211 ~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip 290 (704)
..+.++||||++++.++.+++.|.+. ++....+||. ..+|...+..|..+...|+||||+|++|+||+
T Consensus 428 ~~grpVLIft~Si~~se~Ls~~L~~~----------gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~ 495 (830)
T PRK12904 428 KKGQPVLVGTVSIEKSELLSKLLKKA----------GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIK 495 (830)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHC----------CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCcc
Confidence 45679999999999999999999875 6778889995 67888889999999999999999999999997
Q ss_pred Ce---EEEEeCCccc----------------cccccCCCCccccccc-cccHHhHHhhccccCCC-CCceEEEecCCcc
Q 005291 291 GV---VYVIDCGYVK----------------QRQYNPSSGMYSLDVV-QISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (704)
Q Consensus 291 ~v---~~VId~g~~k----------------~~~~~~~~g~~~l~~~-~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~ 348 (704)
== .+.....+.. ...--...|++.+.+. +.|.--=.|-.|||||+ .||.+-.+.|-++
T Consensus 496 LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 496 LGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred CCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 21 0000000000 0000112355555543 66766667999999999 6898766665443
No 110
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.69 E-value=4e-17 Score=140.50 Aligned_cols=90 Identities=44% Similarity=0.743 Sum_probs=79.4
Q ss_pred HHHHHHHHcccccCCCCCCHHHHHHhcCCCChHhHHHHHHhhhc-CCHHHHHHHHHHhccCCcccCCCCchHHHHhhcCC
Q 005291 399 DALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEF-GCLSQALTVAAMLSAETTLLPGRSKSTEKKRKHTP 477 (704)
Q Consensus 399 ~al~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~-~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~ 477 (704)
.|++.|+.+||||.+|+||++|+.|++||++|++||||+.|..+ +|.+++++|+|++++.++|..+ ....+....+..
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~~ 79 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARRR 79 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999 9999999999999999998766 444555666777
Q ss_pred CCCCCCCC-CCCHHHHH
Q 005291 478 LELPDGSG-WGDHIQLL 493 (704)
Q Consensus 478 ~~~~~~~~-~~D~~~~l 493 (704)
|. +. .|||++++
T Consensus 80 ~~----~~~~~D~~~~l 92 (92)
T smart00847 80 FA----SGRESDHLTLL 92 (92)
T ss_pred cc----CCCCCChhhhC
Confidence 87 55 79999864
No 111
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.69 E-value=3.4e-16 Score=165.83 Aligned_cols=281 Identities=23% Similarity=0.252 Sum_probs=184.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccceEE
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKY 99 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I~~ 99 (704)
.+++.-+|||.||||.-+.+-+... +.-++.-|.|.||.++++|+ ...|..+....|...++..........+-
T Consensus 191 RkIi~H~GPTNSGKTy~ALqrl~~a-----ksGvycGPLrLLA~EV~~r~-na~gipCdL~TGeE~~~~~~~~~~a~hvS 264 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRALQRLKSA-----KSGVYCGPLRLLAHEVYDRL-NALGIPCDLLTGEERRFVLDNGNPAQHVS 264 (700)
T ss_pred heEEEEeCCCCCchhHHHHHHHhhh-----ccceecchHHHHHHHHHHHh-hhcCCCccccccceeeecCCCCCcccceE
Confidence 4678889999999997666655543 34567789999999999998 55677777777766666544444455666
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhcccCCCCccccCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPG 179 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~~~~~~~i~i~~ 179 (704)
||-+|.- .-..|++.||||++ .+-|.+-..++-+.++......+.+.+=-|-+|- +.+ +....|
T Consensus 265 cTVEM~s-------v~~~yeVAViDEIQ-mm~Dp~RGwAWTrALLGl~AdEiHLCGepsvldl--V~~------i~k~TG 328 (700)
T KOG0953|consen 265 CTVEMVS-------VNTPYEVAVIDEIQ-MMRDPSRGWAWTRALLGLAADEIHLCGEPSVLDL--VRK------ILKMTG 328 (700)
T ss_pred EEEEEee-------cCCceEEEEehhHH-hhcCcccchHHHHHHHhhhhhhhhccCCchHHHH--HHH------HHhhcC
Confidence 7766542 23568999999999 4556655555556666554444444443232221 111 122233
Q ss_pred CcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCH
Q 005291 180 KLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPP 259 (704)
Q Consensus 180 ~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~ 259 (704)
....|..+-. ..+..-. +.++.-..+-.+|+++|=. ++++|..+...+++. .+..+..+||+|||
T Consensus 329 d~vev~~YeR-l~pL~v~----~~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~---------g~~k~aVIYGsLPP 393 (700)
T KOG0953|consen 329 DDVEVREYER-LSPLVVE----ETALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKA---------GNHKCAVIYGSLPP 393 (700)
T ss_pred CeeEEEeecc-cCcceeh----hhhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHh---------cCcceEEEecCCCC
Confidence 3222222211 1111111 1222223334567776633 788999999999887 35668899999999
Q ss_pred HHHhhccCCCCC--CCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCC-
Q 005291 260 EMQVRVFSPPPP--NCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR- 336 (704)
Q Consensus 260 ~~r~~v~~~~~~--g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~- 336 (704)
+.|.+--..|.+ +..+|+||||..++|+|+. |+-||-+.+.| |+. -.+.+++.+++.|.+|||||.+
T Consensus 394 eTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~K---ysg------~e~~~it~sqikQIAGRAGRf~s 463 (700)
T KOG0953|consen 394 ETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIK---YSG------RETEDITVSQIKQIAGRAGRFGS 463 (700)
T ss_pred chhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeeccc---CCc------ccceeccHHHHHHHhhccccccc
Confidence 877655555544 7899999999999999998 88888766655 332 2345788899999999999984
Q ss_pred ---CceEEEecCCc
Q 005291 337 ---PGKCYRLYPST 347 (704)
Q Consensus 337 ---~G~c~~L~~~~ 347 (704)
.|.+-.|+.++
T Consensus 464 ~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 464 KYPQGEVTTLHSED 477 (700)
T ss_pred CCcCceEEEeeHhh
Confidence 47777776554
No 112
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.67 E-value=2.5e-16 Score=161.66 Aligned_cols=270 Identities=21% Similarity=0.247 Sum_probs=176.0
Q ss_pred CcEEEEcchhhHHHHHHHHHHHHHhCC----ccC--ceeeeeeeccc---ccCcccceEEcchHHHHHHHHhCC-CCCCC
Q 005291 49 SGIIGVTQPRRVAAVSVARRVAQELGV----RLG--EEVGYAIRFED---RTSERTLIKYLTDGVLLREILSNP-DLSPY 118 (704)
Q Consensus 49 ~~~ilv~~P~r~la~~~a~rva~~~~~----~vg--~~vg~~~~~~~---~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~ 118 (704)
....+++.|.|+++.|....+.+..-- .+. ..+| ++.... .....++|++.|||+++..+.... .+..+
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmig-gv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIG-GVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhh-hHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 447889999999999999976543211 111 1233 122222 223579999999999998886544 68889
Q ss_pred ceEEEeCCCcCC--CCHHHHHHHHHHHHHHhc--cCcEEEEEecCCCh---HHHhc-ccCCCCccccCC-CcCceeEEec
Q 005291 119 SVIILDEAHERS--LNTDILLGLVKRLVNLRA--SKLKILITSATLDG---EKVSK-FFSNCPTLNVPG-KLYPVEILHS 189 (704)
Q Consensus 119 ~~IIiDEaHer~--l~~d~l~~llk~l~~~~~--~~~kiI~~SATl~~---~~~~~-~~~~~~~i~i~~-~~~pv~~~~~ 189 (704)
.++++||++-.. .++|++..+-..+-.... ..++.+++|||+.. ..+.+ .+.-+..+...| ...|-++++.
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhv 444 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHV 444 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccc
Confidence 999999998311 234555554444433322 25889999999843 22221 110011111111 0111111110
Q ss_pred CC--------------------------------CCcchHHHHHHHH-----HHHHccCCCCCEEEEeCCHHHHHHHHHH
Q 005291 190 KE--------------------------------RPTSYLESALKTA-----IDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (704)
Q Consensus 190 ~~--------------------------------~~~~~~~~~~~~~-----~~i~~~~~~g~iLVFl~~~~~i~~~~~~ 232 (704)
.. ...+...+++..+ +.........+.+|||.++.++..+.++
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~ 524 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERM 524 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHH
Confidence 00 0001111111110 0011123456899999999999999999
Q ss_pred HHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCc
Q 005291 233 LEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGM 312 (704)
Q Consensus 233 L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~ 312 (704)
+.+.-. ..+.++++||+..++||++.++.|+.+..|.+|||++|++|+||.++-++|+.-
T Consensus 525 ~~qkgg-------~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invt------------- 584 (725)
T KOG0349|consen 525 MNQKGG-------KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVT------------- 584 (725)
T ss_pred HHHcCC-------ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEe-------------
Confidence 887631 368899999999999999999999999999999999999999999999999833
Q ss_pred cccccccccHHhHHhhccccCCC-CCceEEEec
Q 005291 313 YSLDVVQISKVQANQRVGRAGRT-RPGKCYRLY 344 (704)
Q Consensus 313 ~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~ 344 (704)
-|-.+.+|.||+||.||. +-|..+.|.
T Consensus 585 -----lpd~k~nyvhrigrvgraermglaislv 612 (725)
T KOG0349|consen 585 -----LPDDKTNYVHRIGRVGRAERMGLAISLV 612 (725)
T ss_pred -----cCcccchhhhhhhccchhhhcceeEEEe
Confidence 255777889999999999 778888775
No 113
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.64 E-value=7.3e-16 Score=148.22 Aligned_cols=156 Identities=22% Similarity=0.215 Sum_probs=107.1
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCC-CCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeee--
Q 005291 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYT-KSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA-- 84 (704)
Q Consensus 8 ~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~-~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~-- 84 (704)
++|.++++.+.+++++++.||||+|||+.....+...... ....++++.|++.++.++++++...+...........
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 81 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGG 81 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTT
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccccccc
Confidence 6899999999999999999999999996655444433222 3459999999999999999999777665211111110
Q ss_pred eecc----cccCcccceEEcchHHHHHHHHhC-CCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc--cCcEEEEEe
Q 005291 85 IRFE----DRTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA--SKLKILITS 157 (704)
Q Consensus 85 ~~~~----~~~~~~~~I~~~T~g~Ll~~l~~~-~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~--~~~kiI~~S 157 (704)
.... .......+|+++|++++.+.+... ..+.++++||+||+|+...+ . ....+..+..... .+.++|+||
T Consensus 82 ~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-~-~~~~~~~i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 82 QSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-T-FRAMLKSILRRLKRFKNIQIILLS 159 (169)
T ss_dssp SCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-T-HHHHHHHHHHHSHTTTTSEEEEEE
T ss_pred ccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccc-c-HHHHHHHHHHHhcCCCCCcEEEEe
Confidence 0000 111235899999999999988753 25566999999999953322 2 2223444444331 268999999
Q ss_pred cCCChHHHh
Q 005291 158 ATLDGEKVS 166 (704)
Q Consensus 158 ATl~~~~~~ 166 (704)
||++ ..++
T Consensus 160 AT~~-~~~~ 167 (169)
T PF00270_consen 160 ATLP-SNVE 167 (169)
T ss_dssp SSST-HHHH
T ss_pred eCCC-hhHh
Confidence 9998 5443
No 114
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.64 E-value=3.3e-14 Score=158.56 Aligned_cols=334 Identities=18% Similarity=0.218 Sum_probs=192.0
Q ss_pred hHHHHHH----HHHhccCC-EEEEEcCCCCcHHHHHHHHHHhc-CCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCce
Q 005291 7 LQYEETI----VETVEQNP-VVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (704)
Q Consensus 7 ~~~~~~i----l~~l~~~~-~vii~gpTGsGKTt~l~~~l~~~-~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~ 80 (704)
..+|... .+++.+|+ -++|+..||+|||..+.+++..+ ....-++|+++.-|++|..|.+..+...+-.. ..
T Consensus 167 RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~--~~ 244 (875)
T COG4096 167 RYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG--TK 244 (875)
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCc--cc
Confidence 4455544 44555543 47888999999993333333322 22335699999999999999887765544321 11
Q ss_pred eeeeeecccccCcccceEEcchHHHHHHHHhC-C-----CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEE
Q 005291 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSN-P-----DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (704)
Q Consensus 81 vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~-~-----~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI 154 (704)
+ ..-.+.....+++|.++|...+....... . ....+++||||||| |++....- .++.... .-.+
T Consensus 245 ~--n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-----~I~dYFd--A~~~ 314 (875)
T COG4096 245 M--NKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-----SILDYFD--AATQ 314 (875)
T ss_pred e--eeeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-----HHHHHHH--HHHH
Confidence 1 11122223336789999998887766433 1 34458999999999 77666543 3444332 2234
Q ss_pred EEecCCChHH---HhcccCCCCcc------------ccCCCcCceeEEecCC--------------------CCcc----
Q 005291 155 ITSATLDGEK---VSKFFSNCPTL------------NVPGKLYPVEILHSKE--------------------RPTS---- 195 (704)
Q Consensus 155 ~~SATl~~~~---~~~~~~~~~~i------------~i~~~~~pv~~~~~~~--------------------~~~~---- 195 (704)
+++||+.... --.||++.|+. .++.+.+.+.+.+... ....
T Consensus 315 gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~ 394 (875)
T COG4096 315 GLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEAR 394 (875)
T ss_pred hhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCccccccccc
Confidence 4499985422 33567443321 1222222222221110 0000
Q ss_pred ---------hHHHHHHH-HHHHHcc--C--CCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHH
Q 005291 196 ---------YLESALKT-AIDIHVR--E--PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEM 261 (704)
Q Consensus 196 ---------~~~~~~~~-~~~i~~~--~--~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~ 261 (704)
...+.+.. +.+.... . ..+++||||.+..+++.+...|.+...+.+ +--+..+.|.-...
T Consensus 395 d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~-----~~~a~~IT~d~~~~- 468 (875)
T COG4096 395 DFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYN-----GRYAMKITGDAEQA- 468 (875)
T ss_pred ccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcccc-----CceEEEEeccchhh-
Confidence 01112222 2222222 1 147899999999999999999988765421 23344455544322
Q ss_pred Hhhc--cCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCCC--
Q 005291 262 QVRV--FSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRP-- 337 (704)
Q Consensus 262 r~~v--~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~-- 337 (704)
|..+ |.. ++.-.+|.++.+.+.||||+|.|..+|-. ..--|+.-|+|+.||+-|..+
T Consensus 469 q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~------------------r~VrSktkF~QMvGRGTRl~~~~ 529 (875)
T COG4096 469 QALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFD------------------RKVRSKTKFKQMVGRGTRLCPDL 529 (875)
T ss_pred HHHHHHHHh-cCCCCceEEehhhhhcCCCchheeeeeeh------------------hhhhhHHHHHHHhcCccccCccc
Confidence 2222 222 23456899999999999999998888842 223489999999999999843
Q ss_pred c-----e-EEEec---CCccccccCCCCCCCccccCChHHHHHhhcccCc
Q 005291 338 G-----K-CYRLY---PSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDL 378 (704)
Q Consensus 338 G-----~-c~~L~---~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~l~~ 378 (704)
| + .|.++ .--.|-+ |.+...++-.+..+..=++.....+.
T Consensus 530 ~~~~~dK~~F~ifDf~~~~~~~~-~~~~~~e~~~~~~l~~rLF~~~~~~~ 578 (875)
T COG4096 530 GGPEQDKEFFTIFDFVDNTEYFE-MDPEMREGRVRVSLEQRLFADRLFDL 578 (875)
T ss_pred cCccccceeEEEEEhhhhhhhhc-cCcccccccccchHHHHHhhhhhccC
Confidence 2 2 23333 2223333 55666666666666655554444433
No 115
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=1.6e-14 Score=165.11 Aligned_cols=136 Identities=17% Similarity=0.118 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEE
Q 005291 198 ESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFI 277 (704)
Q Consensus 198 ~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIl 277 (704)
.+.++.+...|. .+-++||||++.+..+.++..|... ++....+|+.++..++..+.+.+++|. |+
T Consensus 436 ~Aii~ei~~~~~--~GrpVLV~t~sv~~se~ls~~L~~~----------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--Vt 501 (908)
T PRK13107 436 QAIIKDIKDCRE--RGQPVLVGTVSIEQSELLARLMVKE----------KIPHEVLNAKFHEREAEIVAQAGRTGA--VT 501 (908)
T ss_pred HHHHHHHHHHHH--cCCCEEEEeCcHHHHHHHHHHHHHC----------CCCeEeccCcccHHHHHHHHhCCCCCc--EE
Confidence 344555555553 4669999999999999999999875 777888999999999999999999987 99
Q ss_pred EEcccccccccCCC---eEEEEeCCccc----------------cccccCCCCcccccc-ccccHHhHHhhccccCCC-C
Q 005291 278 VSTNIAETSLTVDG---VVYVIDCGYVK----------------QRQYNPSSGMYSLDV-VQISKVQANQRVGRAGRT-R 336 (704)
Q Consensus 278 vaTniae~gidip~---v~~VId~g~~k----------------~~~~~~~~g~~~l~~-~~iS~~~~~QR~GRaGR~-~ 336 (704)
||||+|++|.||.= ..+-+. -+.. ...--...|+..+.+ .+-|.--=.|-.|||||+ .
T Consensus 502 IATnmAGRGTDIkLggn~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGD 580 (908)
T PRK13107 502 IATNMAGRGTDIVLGGNWNMEIE-ALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGD 580 (908)
T ss_pred EecCCcCCCcceecCCchHHhhh-hhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCC
Confidence 99999999999851 000000 0000 000001134443333 245555556999999999 6
Q ss_pred CceEEEecCCcc
Q 005291 337 PGKCYRLYPSTV 348 (704)
Q Consensus 337 ~G~c~~L~~~~~ 348 (704)
||.+-.+.|-++
T Consensus 581 PGss~f~lSlED 592 (908)
T PRK13107 581 AGSSRFYLSMED 592 (908)
T ss_pred CCceeEEEEeCc
Confidence 897766655443
No 116
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.62 E-value=2.3e-14 Score=161.85 Aligned_cols=272 Identities=16% Similarity=0.136 Sum_probs=182.1
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCC--ccCcee
Q 005291 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV--RLGEEV 81 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~--~vg~~v 81 (704)
.+.|..|.-....+..|+...|+||||.||||+...+.+.... .+++++++.||..|+.|+++++.+.... .....+
T Consensus 81 ~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~-kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~ 159 (1187)
T COG1110 81 FRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK-KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLV 159 (1187)
T ss_pred CCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh-cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceee
Confidence 3678999999999999999999999999999987766555443 4689999999999999999998654321 111222
Q ss_pred eeeeecc---------cccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCc---CCCCHHHHHHHH---------
Q 005291 82 GYAIRFE---------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHE---RSLNTDILLGLV--------- 140 (704)
Q Consensus 82 g~~~~~~---------~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHe---r~l~~d~l~~ll--------- 140 (704)
.|.-... ...+.+.+|+++|.+.|.+..-.-.. -++++|++|.++- .+-+.|.++.++
T Consensus 160 ~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~ 238 (1187)
T COG1110 160 VYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIES 238 (1187)
T ss_pred eeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHHH
Confidence 2332211 11235689999999988776643222 4699999999984 222333322221
Q ss_pred --------------------HHHHH--------HhccCcEEEEEecCCChH-----HHhcccCCCCccccCCCc---Cce
Q 005291 141 --------------------KRLVN--------LRASKLKILITSATLDGE-----KVSKFFSNCPTLNVPGKL---YPV 184 (704)
Q Consensus 141 --------------------k~l~~--------~~~~~~kiI~~SATl~~~-----~~~~~~~~~~~i~i~~~~---~pv 184 (704)
+.+.+ .+.+...+|++|||..+. .|...++ +.+.+.. ..+
T Consensus 239 a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg----FevG~~~~~LRNI 314 (1187)
T COG1110 239 AYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG----FEVGSGGEGLRNI 314 (1187)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC----CccCccchhhhhe
Confidence 01100 111357899999998543 2555553 2222211 122
Q ss_pred eEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCC---HHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHH
Q 005291 185 EILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTG---QDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEM 261 (704)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~---~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~ 261 (704)
...|... +. ...++.+...- +...|||++. ++.++++++.|++. ++.+..+|+.
T Consensus 315 vD~y~~~---~~----~e~~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~----------Gi~a~~~~a~----- 371 (1187)
T COG1110 315 VDIYVES---ES----LEKVVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSH----------GINAELIHAE----- 371 (1187)
T ss_pred eeeeccC---cc----HHHHHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhc----------CceEEEeecc-----
Confidence 2223222 22 22333333222 3367999999 88889999988875 8888888873
Q ss_pred HhhccCCCCCCCcEEEEEc----ccccccccCCC-eEEEEeCCccccc
Q 005291 262 QVRVFSPPPPNCRRFIVST----NIAETSLTVDG-VVYVIDCGYVKQR 304 (704)
Q Consensus 262 r~~v~~~~~~g~~kIlvaT----niae~gidip~-v~~VId~g~~k~~ 304 (704)
..+.++.|..|+..++|.. +++-+|||+|. ++|+|-.|.+|.+
T Consensus 372 ~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~r 419 (1187)
T COG1110 372 KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFR 419 (1187)
T ss_pred chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCcee
Confidence 3678999999999999976 58999999998 9999999999765
No 117
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.61 E-value=3.9e-15 Score=147.97 Aligned_cols=156 Identities=21% Similarity=0.211 Sum_probs=107.2
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHH-HHHHHHhcCCC---CCcEEEEcchhhHHHHHHHHHHHHHhC---CccC
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGYT---KSGIIGVTQPRRVAAVSVARRVAQELG---VRLG 78 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt~-l~~~l~~~~~~---~~~~ilv~~P~r~la~~~a~rva~~~~---~~vg 78 (704)
.+.+|.++++.+.+++++++.+|||+|||.. +..++...... .+.+++++.|++.++.|++..+..... ..+.
T Consensus 22 ~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~ 101 (203)
T cd00268 22 PTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVV 101 (203)
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEE
Confidence 6789999999999999999999999999943 34444333322 456899999999999999888765433 2222
Q ss_pred ceeeeeeecc--cccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEE
Q 005291 79 EEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (704)
Q Consensus 79 ~~vg~~~~~~--~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~ 155 (704)
...|.....+ .....+.+|+++|++.+.+.+.... .+.+++++|+||+|+ ..+.. ....+..+....+.+.++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~-~~~~~-~~~~~~~~~~~l~~~~~~~~ 179 (203)
T cd00268 102 VIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADR-MLDMG-FEDQIREILKLLPKDRQTLL 179 (203)
T ss_pred EEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHH-hhccC-hHHHHHHHHHhCCcccEEEE
Confidence 2222110000 0111367899999999988875544 678899999999995 22332 23334444444555899999
Q ss_pred EecCCChH
Q 005291 156 TSATLDGE 163 (704)
Q Consensus 156 ~SATl~~~ 163 (704)
+|||++..
T Consensus 180 ~SAT~~~~ 187 (203)
T cd00268 180 FSATMPKE 187 (203)
T ss_pred EeccCCHH
Confidence 99999743
No 118
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.60 E-value=5.4e-14 Score=162.94 Aligned_cols=285 Identities=13% Similarity=0.077 Sum_probs=159.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc-CCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeeccc-ccCcccceE
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED-RTSERTLIK 98 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~-~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~-~~~~~~~I~ 98 (704)
+..+|..+||||||..+..++... ......+|++++||..|..|..+.+.......+ ..++..-.... .......|+
T Consensus 264 ~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~-~~~~s~~~L~~~l~~~~~~ii 342 (667)
T TIGR00348 264 RGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKDCA-ERIESIAELKRLLEKDDGGII 342 (667)
T ss_pred ceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCCCC-cccCCHHHHHHHHhCCCCCEE
Confidence 578899999999993333232221 223456899999999999999998866432111 11110000000 112346799
Q ss_pred EcchHHHHHHHHhC--C-CCCCC-ceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCCh----HHH---hc
Q 005291 99 YLTDGVLLREILSN--P-DLSPY-SVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG----EKV---SK 167 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~--~-~l~~~-~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~----~~~---~~ 167 (704)
++|.+.+.+.+... + ..... .+||+|||| |+....+. +.+....+ +...+++|||+-. ... ..
T Consensus 343 vtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~~----~~l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~ 416 (667)
T TIGR00348 343 ITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGELA----KNLKKALK-NASFFGFTGTPIFKKDRDTSLTFAY 416 (667)
T ss_pred EEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHHH----HHHHhhCC-CCcEEEEeCCCcccccccccccccC
Confidence 99999887643221 1 11111 289999999 67654432 22223445 7899999999832 111 11
Q ss_pred ccCCCCcccc-------CCCcCceeEEecCCCC-----c-------------------ch--------------------
Q 005291 168 FFSNCPTLNV-------PGKLYPVEILHSKERP-----T-------------------SY-------------------- 196 (704)
Q Consensus 168 ~~~~~~~i~i-------~~~~~pv~~~~~~~~~-----~-------------------~~-------------------- 196 (704)
.|++ ++... .| +.+.+.|..... . +.
T Consensus 417 ~fg~-~i~~Y~~~~AI~dG--~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 493 (667)
T TIGR00348 417 VFGR-YLHRYFITDAIRDG--LTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNED 493 (667)
T ss_pred CCCC-eEEEeeHHHHhhcC--CeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChH
Confidence 1222 11110 12 222222321110 0 00
Q ss_pred -HHHHHHHHHHHH---ccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHH------------
Q 005291 197 -LESALKTAIDIH---VREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPE------------ 260 (704)
Q Consensus 197 -~~~~~~~~~~i~---~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~------------ 260 (704)
+......++... ....+++.+|||.++..+..+.+.|.+...... +...+.++++.+.+
T Consensus 494 ~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~-----~~~~vv~s~~~~~~~~~~~~~~~~~~ 568 (667)
T TIGR00348 494 RLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKF-----EASAIVMTGKESDDAEIRDYNKHIRT 568 (667)
T ss_pred HHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccccc-----CCeeEEecCCccchhHHHHHHHHhcc
Confidence 001111111111 112258999999999999999998877643210 12233333332221
Q ss_pred ---------HHhhccCCCCC-CCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhcc
Q 005291 261 ---------MQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVG 330 (704)
Q Consensus 261 ---------~r~~v~~~~~~-g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~G 330 (704)
....+.+.|++ +..+|+|+++.+.||+|.|.+.+++- ..|+....++|.+|
T Consensus 569 ~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyl-------------------dKplk~h~LlQai~ 629 (667)
T TIGR00348 569 KFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYL-------------------DKPLKYHGLLQAIA 629 (667)
T ss_pred ccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEE-------------------eccccccHHHHHHH
Confidence 11245566654 67899999999999999999888773 12444456789999
Q ss_pred ccCCC-CCce
Q 005291 331 RAGRT-RPGK 339 (704)
Q Consensus 331 RaGR~-~~G~ 339 (704)
|+-|. .+|+
T Consensus 630 R~nR~~~~~K 639 (667)
T TIGR00348 630 RTNRIDGKDK 639 (667)
T ss_pred HhccccCCCC
Confidence 99995 5554
No 119
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.59 E-value=3.1e-14 Score=161.83 Aligned_cols=314 Identities=18% Similarity=0.205 Sum_probs=191.6
Q ss_pred CCchHHHHHHHHHhccC----CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCc
Q 005291 4 LPILQYEETIVETVEQN----PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~----~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~ 79 (704)
+.+..-|..+.+.+.+. ...++.|-||||||-...+++.... ..|+.+++++|-..+..|+..|+...+|..++.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L-~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~v 275 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVL-AQGKQVLVLVPEIALTPQLLARFKARFGAKVAV 275 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHH-HcCCEEEEEeccccchHHHHHHHHHHhCCChhh
Confidence 34556677777776554 7889999999999955544544432 346799999999999999999999999977654
Q ss_pred eeee---eeeccc---ccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHH-----HHHHHHHHHHHhc
Q 005291 80 EVGY---AIRFED---RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI-----LLGLVKRLVNLRA 148 (704)
Q Consensus 80 ~vg~---~~~~~~---~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~-----l~~llk~l~~~~~ 148 (704)
.... ..+.+. ......+|++.|---+. - -+.++++|||||=|+-+...+- ... +..+....
T Consensus 276 lHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-----~-Pf~~LGLIIvDEEHD~sYKq~~~prYhARd-vA~~Ra~~- 347 (730)
T COG1198 276 LHSGLSPGERYRVWRRARRGEARVVIGTRSALF-----L-PFKNLGLIIVDEEHDSSYKQEDGPRYHARD-VAVLRAKK- 347 (730)
T ss_pred hcccCChHHHHHHHHHHhcCCceEEEEechhhc-----C-chhhccEEEEeccccccccCCcCCCcCHHH-HHHHHHHH-
Confidence 4331 112211 12356788888743221 1 4789999999999975543321 111 22222223
Q ss_pred cCcEEEEEecCCChHHHhcccCC-CCccccCCCcC---c--eeEEecCCCC--cc--hHHHHHHHHHHHHccCCCCCEEE
Q 005291 149 SKLKILITSATLDGEKVSKFFSN-CPTLNVPGKLY---P--VEILHSKERP--TS--YLESALKTAIDIHVREPEGDVLI 218 (704)
Q Consensus 149 ~~~kiI~~SATl~~~~~~~~~~~-~~~i~i~~~~~---p--v~~~~~~~~~--~~--~~~~~~~~~~~i~~~~~~g~iLV 218 (704)
.++++|+-|||+.-+.+.....+ ...+.+..|.. + +.+....... .+ +-...++.+-+.. +.+.++|+
T Consensus 348 ~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l--~~geQ~ll 425 (730)
T COG1198 348 ENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTL--ERGEQVLL 425 (730)
T ss_pred hCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHH--hcCCeEEE
Confidence 38899999999987765544322 12233333221 2 2222221111 11 1112222221111 22345555
Q ss_pred EeCCHH------------------------------------------------------------HHHHHHHHHHHHhh
Q 005291 219 FMTGQD------------------------------------------------------------DIEKLVSKLEDKIR 238 (704)
Q Consensus 219 Fl~~~~------------------------------------------------------------~i~~~~~~L~~~~~ 238 (704)
|+|.+. .++++.+.|.+.+
T Consensus 426 flnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~F- 504 (730)
T COG1198 426 FLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLF- 504 (730)
T ss_pred EEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHC-
Confidence 555544 3455555665554
Q ss_pred hcCCCCCCCeEEEeccCCCCHH--HHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccc
Q 005291 239 SLDEGSCMDAVILPLHGSLPPE--MQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLD 316 (704)
Q Consensus 239 ~~~~~~~~~~~v~~lh~~l~~~--~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~ 316 (704)
|+..++.+.++.... .-...+..|.+|+..|||.|.++..|.|+|+++.|.-.+ -|..-+..++.
T Consensus 505 -------P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~------aD~~L~~~DfR 571 (730)
T COG1198 505 -------PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLD------ADTGLGSPDFR 571 (730)
T ss_pred -------CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEe------chhhhcCCCcc
Confidence 567777777776543 345668889999999999999999999999999886211 11122223344
Q ss_pred cccccHHhHHhhccccCCC-CCceEEE
Q 005291 317 VVQISKVQANQRVGRAGRT-RPGKCYR 342 (704)
Q Consensus 317 ~~~iS~~~~~QR~GRaGR~-~~G~c~~ 342 (704)
-.--....+.|=+|||||. .+|..+.
T Consensus 572 A~Er~fqll~QvaGRAgR~~~~G~VvI 598 (730)
T COG1198 572 ASERTFQLLMQVAGRAGRAGKPGEVVI 598 (730)
T ss_pred hHHHHHHHHHHHHhhhccCCCCCeEEE
Confidence 3444566778999999998 7887663
No 120
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=2.2e-13 Score=156.04 Aligned_cols=121 Identities=16% Similarity=0.152 Sum_probs=85.1
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHH---HhCCccCcee
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ---ELGVRLGEEV 81 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~---~~~~~vg~~v 81 (704)
..+++.+++..+..++.++..++||+||| +++.+++..... +..+.++.|++.||.+.++.+.. .+|..++..+
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~ 170 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLV 170 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh--cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 78899999999999999999999999999 444444443322 23477889999999999887654 3455554444
Q ss_pred eeeeecccccCcccceEEcchHHH-HHHHHhCC-CC-------CCCceEEEeCCCc
Q 005291 82 GYAIRFEDRTSERTLIKYLTDGVL-LREILSNP-DL-------SPYSVIILDEAHE 128 (704)
Q Consensus 82 g~~~~~~~~~~~~~~I~~~T~g~L-l~~l~~~~-~l-------~~~~~IIiDEaHe 128 (704)
|.....+....-.++|+|+|||.| ..++.... .+ +.+.++|||||+.
T Consensus 171 GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 171 SGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred CCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 421111111122579999999999 77776552 22 3568999999985
No 121
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.54 E-value=4.6e-14 Score=161.74 Aligned_cols=115 Identities=18% Similarity=0.137 Sum_probs=99.7
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCC
Q 005291 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD 290 (704)
Q Consensus 211 ~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip 290 (704)
..+.++|||+++++.++.+++.|.+. ++.+..+||+++..+|.++++.|++|...|+|||+++++|+|+|
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~----------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKEL----------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLP 509 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhh----------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeC
Confidence 34678999999999999999999875 67888999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCCCceEEEecCCcc
Q 005291 291 GVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTV 348 (704)
Q Consensus 291 ~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~ 348 (704)
++++||.++- +....|-|..+|+||+|||||..+|+|+.+++...
T Consensus 510 ~v~lVvi~Da-------------difG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~ 554 (655)
T TIGR00631 510 EVSLVAILDA-------------DKEGFLRSERSLIQTIGRAARNVNGKVIMYADKIT 554 (655)
T ss_pred CCcEEEEeCc-------------ccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCC
Confidence 9999997441 12223557788999999999999999998877543
No 122
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.51 E-value=6.2e-12 Score=150.32 Aligned_cols=139 Identities=13% Similarity=0.143 Sum_probs=90.7
Q ss_pred chHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCc
Q 005291 195 SYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCR 274 (704)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~ 274 (704)
.|.......+..+... .+|++|||+++.+..+.++..|...... .++.++. .+.. ..|.++++.|++++.
T Consensus 657 ~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~------~~~~~l~--q~~~-~~r~~ll~~F~~~~~ 726 (850)
T TIGR01407 657 EYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEF------EGYEVLA--QGIN-GSRAKIKKRFNNGEK 726 (850)
T ss_pred HHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhccc------cCceEEe--cCCC-ccHHHHHHHHHhCCC
Confidence 4555555666555433 4589999999999999999998753211 1333332 2222 467788889998999
Q ss_pred EEEEEcccccccccCCCeE--EEEeCCccccccccCC----------CCccccc--cccccHHhHHhhccccCCCC--Cc
Q 005291 275 RFIVSTNIAETSLTVDGVV--YVIDCGYVKQRQYNPS----------SGMYSLD--VVQISKVQANQRVGRAGRTR--PG 338 (704)
Q Consensus 275 kIlvaTniae~gidip~v~--~VId~g~~k~~~~~~~----------~g~~~l~--~~~iS~~~~~QR~GRaGR~~--~G 338 (704)
.|+++|+.+.+|||+|+.. .||-.|++-..--||. .|-..+. ..|.......|-+||.=|.. .|
T Consensus 727 ~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G 806 (850)
T TIGR01407 727 AILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRG 806 (850)
T ss_pred eEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceE
Confidence 9999999999999998854 6666776543222220 1111111 11334456789999999984 46
Q ss_pred eEEEe
Q 005291 339 KCYRL 343 (704)
Q Consensus 339 ~c~~L 343 (704)
..+.|
T Consensus 807 ~v~il 811 (850)
T TIGR01407 807 SIVIL 811 (850)
T ss_pred EEEEE
Confidence 66654
No 123
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.48 E-value=8.3e-14 Score=147.51 Aligned_cols=312 Identities=10% Similarity=0.024 Sum_probs=193.8
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc-CCCCCcEEEEcchhhHHHHHHHHHH------HHHhCCc-c
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRV------AQELGVR-L 77 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~-~~~~~~~ilv~~P~r~la~~~a~rv------a~~~~~~-v 77 (704)
-++++-+++..+.+|+.+++.-.|.+||++.-....... ........++..|+.+++....+-. -.++... +
T Consensus 287 ~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V 366 (1034)
T KOG4150|consen 287 GIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYV 366 (1034)
T ss_pred hhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhccee
Confidence 467888999999999999999999999994321111110 1122335566678777776543321 0111100 0
Q ss_pred Cceeeeeeeccc-ccCcccceEEcchHHHHHHHHhCC-----CCCCCceEEEeCCCcCCCCHH-HHHHHHHHHHHHh---
Q 005291 78 GEEVGYAIRFED-RTSERTLIKYLTDGVLLREILSNP-----DLSPYSVIILDEAHERSLNTD-ILLGLVKRLVNLR--- 147 (704)
Q Consensus 78 g~~vg~~~~~~~-~~~~~~~I~~~T~g~Ll~~l~~~~-----~l~~~~~IIiDEaHer~l~~d-~l~~llk~l~~~~--- 147 (704)
...-|..-..++ ....+.+++|..+.+.....+... .+-...+++.||+|-...-+. .....++.+....
T Consensus 367 ~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F 446 (1034)
T KOG4150|consen 367 EMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGF 446 (1034)
T ss_pred ecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHH
Confidence 000000000000 011356788888887776655433 233346789999995332222 2222344443322
Q ss_pred --ccCcEEEEEecCCC-h-HHHhcccC--CCCccccCCCcCcee--EEecCCC-------CcchHHHHHHHHHHHHccCC
Q 005291 148 --ASKLKILITSATLD-G-EKVSKFFS--NCPTLNVPGKLYPVE--ILHSKER-------PTSYLESALKTAIDIHVREP 212 (704)
Q Consensus 148 --~~~~kiI~~SATl~-~-~~~~~~~~--~~~~i~i~~~~~pv~--~~~~~~~-------~~~~~~~~~~~~~~i~~~~~ 212 (704)
..+++++-.|||+- + ...++.|+ ....+++.|.+..-. +.|.+.. ..+++.+....+.++.. .
T Consensus 447 ~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~--~ 524 (1034)
T KOG4150|consen 447 EASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQ--H 524 (1034)
T ss_pred HhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHH--c
Confidence 14789999999993 3 33556664 345666777554333 2333321 12334333333334332 3
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCe
Q 005291 213 EGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGV 292 (704)
Q Consensus 213 ~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v 292 (704)
+-.++.||+.++-++-+....++.+-+.... .--.|..+.||-..++|+++....-.|+.+-|+|||.+|-||||.+.
T Consensus 525 ~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~--LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~L 602 (1034)
T KOG4150|consen 525 GLRCIAFCPSRKLCELVLCLTREILAETAPH--LVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHL 602 (1034)
T ss_pred CCcEEEeccHHHHHHHHHHHHHHHHHHhhHH--HHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccc
Confidence 4589999999998887776666554332210 12246678999999999999998888999999999999999999999
Q ss_pred EEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCce
Q 005291 293 VYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGK 339 (704)
Q Consensus 293 ~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~ 339 (704)
+.|+.+|| |.|.++++|.+|||||. .+..
T Consensus 603 DAVl~~GF------------------P~S~aNl~QQ~GRAGRRNk~SL 632 (1034)
T KOG4150|consen 603 DAVLHLGF------------------PGSIANLWQQAGRAGRRNKPSL 632 (1034)
T ss_pred eeEEEccC------------------chhHHHHHHHhccccccCCCce
Confidence 99999998 78999999999999998 4443
No 124
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.48 E-value=4.1e-12 Score=146.75 Aligned_cols=96 Identities=20% Similarity=0.162 Sum_probs=70.5
Q ss_pred EEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCC--------------------------CC
Q 005291 217 LIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSP--------------------------PP 270 (704)
Q Consensus 217 LVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~--------------------------~~ 270 (704)
||=+++++.+..+++.|........ ..+.+..+||..+...|..+++. ..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~----~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~ 835 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEK----YQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPA 835 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccC----CceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccc
Confidence 6777888888888888876643211 36778999999977666554422 11
Q ss_pred CCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCCC
Q 005291 271 PNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRP 337 (704)
Q Consensus 271 ~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~ 337 (704)
.+...|+|||.+.|.|+|++ .+++| +.+.+..+.+||+||..|.+.
T Consensus 836 ~~~~~i~v~Tqv~E~g~D~d-fd~~~--------------------~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 836 LNHLFIVLATPVEEVGRDHD-YDWAI--------------------ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred cCCCeEEEEeeeEEEEeccc-CCeee--------------------eccCcHHHHHHHhhccccccc
Confidence 35779999999999999998 33433 236678889999999999854
No 125
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.48 E-value=2.9e-13 Score=156.37 Aligned_cols=112 Identities=19% Similarity=0.129 Sum_probs=98.5
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCC
Q 005291 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDG 291 (704)
Q Consensus 212 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~ 291 (704)
.+.+++|||+++..++.+++.|.+. ++.+..+||+++..+|..+++.|++|...|+|||+++++|+|+|+
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~----------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~ 514 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL----------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPE 514 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc----------ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccC
Confidence 4668999999999999999999865 788999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCCCceEEEecCC
Q 005291 292 VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPS 346 (704)
Q Consensus 292 v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~ 346 (704)
+++||.++.. +...|.+..+|+||+||+||...|+|+.+++.
T Consensus 515 v~lVii~d~e-------------ifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 515 VSLVAILDAD-------------KEGFLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred CcEEEEeCCc-------------ccccCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 9999975421 11124577889999999999999999988874
No 126
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.44 E-value=6e-13 Score=120.39 Aligned_cols=134 Identities=21% Similarity=0.291 Sum_probs=86.9
Q ss_pred ccCCEEEEEcCCCCcHHHH-HHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecc-cccCccc
Q 005291 18 EQNPVVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFE-DRTSERT 95 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~-l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~-~~~~~~~ 95 (704)
.+|+..+|...+|+|||+. +|.++.+ ....+.+++++.|+|+++.++++.+.. ..+.+..... .....+.
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~-~i~~~~rvLvL~PTRvva~em~~aL~~-------~~~~~~t~~~~~~~~g~~ 73 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVRE-AIKRRLRVLVLAPTRVVAEEMYEALKG-------LPVRFHTNARMRTHFGSS 73 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHH-HHHTT--EEEEESSHHHHHHHHHHTTT-------SSEEEESTTSS----SSS
T ss_pred CCCceeEEecCCCCCCcccccHHHHHH-HHHccCeEEEecccHHHHHHHHHHHhc-------CCcccCceeeeccccCCC
Confidence 4688899999999999975 5555544 345678999999999999998887631 2233332222 1233567
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHH--HHHHHHHHHHHhccCcEEEEEecCCChH
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI--LLGLVKRLVNLRASKLKILITSATLDGE 163 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~--l~~llk~l~~~~~~~~kiI~~SATl~~~ 163 (704)
.|.++|.+.+.+.+.....+.+|++||+||+|- .|... ..+.++..-.. ...++|+||||++..
T Consensus 74 ~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~--~Dp~sIA~rg~l~~~~~~--g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 74 IIDVMCHATYGHFLLNPCRLKNYDVIIMDECHF--TDPTSIAARGYLRELAES--GEAKVIFMTATPPGS 139 (148)
T ss_dssp SEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT----SHHHHHHHHHHHHHHHT--TS-EEEEEESS-TT-
T ss_pred cccccccHHHHHHhcCcccccCccEEEEecccc--CCHHHHhhheeHHHhhhc--cCeeEEEEeCCCCCC
Confidence 788999999988887766889999999999993 44443 33444444222 257999999998743
No 127
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.43 E-value=8.2e-13 Score=121.02 Aligned_cols=103 Identities=25% Similarity=0.340 Sum_probs=92.4
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCC
Q 005291 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDG 291 (704)
Q Consensus 212 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~ 291 (704)
.++++|||+++...++.+++.|.+. ...+.++||+++..++..+++.|.+|..+|+++|+.+++|+|+|+
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~ 96 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP----------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPN 96 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc----------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhh
Confidence 5789999999999999999999763 677999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCC-CceEEE
Q 005291 292 VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR-PGKCYR 342 (704)
Q Consensus 292 v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~-~G~c~~ 342 (704)
+++||..+. +.+...+.|++||+||.+ .|.|+.
T Consensus 97 ~~~vi~~~~------------------~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 97 VSVVINYDL------------------PWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred CCEEEEeCC------------------CCCHHHheecccccccCCCCceEEe
Confidence 999996442 668888999999999995 788775
No 128
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.42 E-value=2e-12 Score=119.15 Aligned_cols=136 Identities=34% Similarity=0.333 Sum_probs=92.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCCC-CCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeeccccc------Cc
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRHGYT-KSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRT------SE 93 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~~~~-~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~------~~ 93 (704)
+++++.||||+|||+.+..++...... ..+++++++|++.++.+....+...... ...+.+........ ..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcC
Confidence 357999999999997777666655432 4568999999999999999988776652 23333333333222 35
Q ss_pred ccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 94 RTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 94 ~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
...++++|++.+.+.+.... ....+++||+||+|. ................. ....+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~-~~~~~~~~~~~~~~~~~-~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHR-LLNQGFGLLGLKILLKL-PKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHH-HhhcchHHHHHHHHhhC-CccceEEEEeccC
Confidence 68899999998888775543 456789999999994 22222221111222222 3478999999996
No 129
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.40 E-value=4.7e-11 Score=127.09 Aligned_cols=167 Identities=19% Similarity=0.116 Sum_probs=118.9
Q ss_pred CcEEEEEecCCChHHHhcccCC--CCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHH
Q 005291 150 KLKILITSATLDGEKVSKFFSN--CPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIE 227 (704)
Q Consensus 150 ~~kiI~~SATl~~~~~~~~~~~--~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~ 227 (704)
-.|+|.+|||+....++.--++ ..++.-.|-.-|. +... +...-++..+..+.... ..+..+||-+-|++.++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLlDP~-ievR--p~~~QvdDL~~EI~~r~--~~~eRvLVTtLTKkmAE 460 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNVVEQIIRPTGLLDPE-IEVR--PTKGQVDDLLSEIRKRV--AKNERVLVTTLTKKMAE 460 (663)
T ss_pred cCCEEEEECCCChHHHHhccCceeEEeecCCCCCCCc-eeee--cCCCcHHHHHHHHHHHH--hcCCeEEEEeehHHHHH
Confidence 4689999999966554432211 1122222322222 1111 22233344444333322 23469999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCcccccccc
Q 005291 228 KLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYN 307 (704)
Q Consensus 228 ~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~ 307 (704)
.+.++|.+. ++.+..+||.+..-+|.+++...+.|...|||.-|.+-.|+|+|.|..|.-.+--|+
T Consensus 461 dLT~Yl~e~----------gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKe---- 526 (663)
T COG0556 461 DLTEYLKEL----------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKE---- 526 (663)
T ss_pred HHHHHHHhc----------CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCcc----
Confidence 999999886 899999999999999999999999999999999999999999999999975332221
Q ss_pred CCCCccccccccccHHhHHhhccccCCCCCceEEEec
Q 005291 308 PSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLY 344 (704)
Q Consensus 308 ~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~ 344 (704)
...-|-.+.+|-+|||.|...|+++...
T Consensus 527 ---------GFLRse~SLIQtIGRAARN~~GkvIlYA 554 (663)
T COG0556 527 ---------GFLRSERSLIQTIGRAARNVNGKVILYA 554 (663)
T ss_pred ---------ccccccchHHHHHHHHhhccCCeEEEEc
Confidence 1234666788999999999999988543
No 130
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.40 E-value=3.9e-12 Score=124.68 Aligned_cols=156 Identities=24% Similarity=0.186 Sum_probs=106.6
Q ss_pred CCchHHHHHHHHHhccC-CEEEEEcCCCCcHHHHHHHHHHhcCC-CCCcEEEEcchhhHHHHHHHHHHHHHhCCccCcee
Q 005291 4 LPILQYEETIVETVEQN-PVVVVIGETGSGKSTQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~-~~vii~gpTGsGKTt~l~~~l~~~~~-~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~v 81 (704)
.+..++|.+++..+... +.+++.||||+|||+.+..++..... ....+++++.|++.++.+...++............
T Consensus 7 ~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T smart00487 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVV 86 (201)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEE
Confidence 35688999999999988 99999999999999755555554433 22468999999999999999988776643211111
Q ss_pred eeeeecc------cccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEE
Q 005291 82 GYAIRFE------DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (704)
Q Consensus 82 g~~~~~~------~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI 154 (704)
....... .......+++++|++.+.+.+.... ....+++||+||+|..... . ....+..+....+...+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~-~~~~~~~~~~~~~~~~~~v 164 (201)
T smart00487 87 GLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-G-FGDQLEKLLKLLPKNVQLL 164 (201)
T ss_pred EEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-C-cHHHHHHHHHhCCccceEE
Confidence 1100100 0111223899999999998886654 6677899999999953321 1 2223334444444488999
Q ss_pred EEecCCC
Q 005291 155 ITSATLD 161 (704)
Q Consensus 155 ~~SATl~ 161 (704)
++|||+.
T Consensus 165 ~~saT~~ 171 (201)
T smart00487 165 LLSATPP 171 (201)
T ss_pred EEecCCc
Confidence 9999994
No 131
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.38 E-value=4.2e-12 Score=133.24 Aligned_cols=300 Identities=17% Similarity=0.193 Sum_probs=184.1
Q ss_pred chHHHHHHHHHhccC---CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceee
Q 005291 6 ILQYEETIVETVEQN---PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (704)
Q Consensus 6 i~~~~~~il~~l~~~---~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg 82 (704)
+.+||+.-+..+..| +.-||+-|-|+|||..-.... .+-.+.++|+...-+.+.|...++............-
T Consensus 303 iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa----~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~r 378 (776)
T KOG1123|consen 303 IRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAA----CTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICR 378 (776)
T ss_pred cCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeee----eeecccEEEEecCccCHHHHHHHHHhhcccCccceEE
Confidence 678899888887654 355778899999993221111 1123466777777788888888887766655444444
Q ss_pred eeeecccccCcccceEEcchHHHHHH---------HHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEE
Q 005291 83 YAIRFEDRTSERTLIKYLTDGVLLRE---------ILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (704)
Q Consensus 83 ~~~~~~~~~~~~~~I~~~T~g~Ll~~---------l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~ki 153 (704)
+.-...+....++.|++.|..|+... .+.--.-+.++++|+||+| .+....+..++..+...++
T Consensus 379 FTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVH--vvPA~MFRRVlsiv~aHcK----- 451 (776)
T KOG1123|consen 379 FTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVH--VVPAKMFRRVLSIVQAHCK----- 451 (776)
T ss_pred eeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhc--cchHHHHHHHHHHHHHHhh-----
Confidence 33333333345677999988776421 1111123568999999999 5666556666666555554
Q ss_pred EEEecCC--ChHHHh--cccCCCCccc-----c--CCCcCceeE--EecCCCC---cchH-----------------HHH
Q 005291 154 LITSATL--DGEKVS--KFFSNCPTLN-----V--PGKLYPVEI--LHSKERP---TSYL-----------------ESA 200 (704)
Q Consensus 154 I~~SATl--~~~~~~--~~~~~~~~i~-----i--~~~~~pv~~--~~~~~~~---~~~~-----------------~~~ 200 (704)
++++||+ ..+++. +|+-++.... + .|..-.|.. .+.+... .+|+ -.+
T Consensus 452 LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFra 531 (776)
T KOG1123|consen 452 LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRA 531 (776)
T ss_pred ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHH
Confidence 8899998 222332 2332322221 1 111111111 1111111 0111 123
Q ss_pred HHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCC-CcEEEEE
Q 005291 201 LKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN-CRRFIVS 279 (704)
Q Consensus 201 ~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g-~~kIlva 279 (704)
..-+++.|.. .+.+||||....-...+.+-.|.+ -++||..+..+|.+|++.|.-+ .++-|+-
T Consensus 532 CqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K---------------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFl 595 (776)
T KOG1123|consen 532 CQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK---------------PFIYGPTSQNERMKILQNFQTNPKVNTIFL 595 (776)
T ss_pred HHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC---------------ceEECCCchhHHHHHHHhcccCCccceEEE
Confidence 3455666654 456899998876555444433322 2489999999999999999754 6788999
Q ss_pred cccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCCC-------ceEEEecCCccc
Q 005291 280 TNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRP-------GKCYRLYPSTVY 349 (704)
Q Consensus 280 Tniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~-------G~c~~L~~~~~~ 349 (704)
.-++.+|+|+|..++.|.. ....-|+-+-.||.||.-|... ...|.|.+++..
T Consensus 596 SKVgDtSiDLPEAnvLIQI-----------------SSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTq 655 (776)
T KOG1123|consen 596 SKVGDTSIDLPEANVLIQI-----------------SSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQ 655 (776)
T ss_pred eeccCccccCCcccEEEEE-----------------cccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchH
Confidence 9999999999999999961 1122366666799999888732 345666666554
No 132
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.38 E-value=3.4e-11 Score=142.63 Aligned_cols=308 Identities=18% Similarity=0.141 Sum_probs=179.3
Q ss_pred chHHHHHHHHHh----ccCCEEEEEcCCCCcHHHHHHHHHHhcC--CCCCcEEEEcchhhHHHHHHHHHHHHHhCC-ccC
Q 005291 6 ILQYEETIVETV----EQNPVVVVIGETGSGKSTQLSQILHRHG--YTKSGIIGVTQPRRVAAVSVARRVAQELGV-RLG 78 (704)
Q Consensus 6 i~~~~~~il~~l----~~~~~vii~gpTGsGKTt~l~~~l~~~~--~~~~~~ilv~~P~r~la~~~a~rva~~~~~-~vg 78 (704)
+.+||.+-+..+ ..|...|+.-+.|.|||.+...++.... ....+.++|++|. .+..+..+.+.+.... .+.
T Consensus 170 Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v~ 248 (1033)
T PLN03142 170 MRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLRAV 248 (1033)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCceE
Confidence 678888887765 3566778888999999966555544322 1234578888995 4455666666554431 111
Q ss_pred ceeeeee-----ecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHH-HHHHHHHHHHhccCcE
Q 005291 79 EEVGYAI-----RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDIL-LGLVKRLVNLRASKLK 152 (704)
Q Consensus 79 ~~vg~~~-----~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l-~~llk~l~~~~~~~~k 152 (704)
...|... +.........+|+++|.+++.+....- .--++++||+|||| +.-+.... ...++.+ . ...
T Consensus 249 ~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L-~k~~W~~VIvDEAH-rIKN~~Sklskalr~L----~-a~~ 321 (1033)
T PLN03142 249 KFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTAL-KRFSWRYIIIDEAH-RIKNENSLLSKTMRLF----S-TNY 321 (1033)
T ss_pred EEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHh-ccCCCCEEEEcCcc-ccCCHHHHHHHHHHHh----h-cCc
Confidence 1112100 000011234679999999887654211 12357899999999 55444332 2222222 2 234
Q ss_pred EEEEecCCChHH---------------------HhcccCCCC-----------------cc-c-----cCCCcCcee---
Q 005291 153 ILITSATLDGEK---------------------VSKFFSNCP-----------------TL-N-----VPGKLYPVE--- 185 (704)
Q Consensus 153 iI~~SATl~~~~---------------------~~~~~~~~~-----------------~i-~-----i~~~~~pv~--- 185 (704)
.+++|+|+=.+. |..+|.... ++ . +. ...|..
T Consensus 322 RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~-~~LPpK~e~ 400 (1033)
T PLN03142 322 RLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVE-KGLPPKKET 400 (1033)
T ss_pred EEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHh-hhCCCceeE
Confidence 578899972221 122221100 00 0 00 001110
Q ss_pred EEecCCCC--cchHHH-----------------HH-----------------------------------------HHHH
Q 005291 186 ILHSKERP--TSYLES-----------------AL-----------------------------------------KTAI 205 (704)
Q Consensus 186 ~~~~~~~~--~~~~~~-----------------~~-----------------------------------------~~~~ 205 (704)
+.+..... ..+... .+ ..++
T Consensus 401 iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL 480 (1033)
T PLN03142 401 ILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLL 480 (1033)
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHH
Confidence 11111000 000000 00 0000
Q ss_pred HHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCC---CCcEEEEEccc
Q 005291 206 DIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP---NCRRFIVSTNI 282 (704)
Q Consensus 206 ~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~---g~~kIlvaTni 282 (704)
.. ....+.++|||+.-......+.+.|... ++....+||+++.++|..+++.|.. +..-+|++|.+
T Consensus 481 ~~-Lk~~g~KVLIFSQft~~LdiLed~L~~~----------g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrA 549 (1033)
T PLN03142 481 PK-LKERDSRVLIFSQMTRLLDILEDYLMYR----------GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRA 549 (1033)
T ss_pred HH-HHhcCCeEEeehhHHHHHHHHHHHHHHc----------CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccc
Confidence 00 1234569999998777777666666543 6778899999999999999999964 23467899999
Q ss_pred ccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCC---CceEEEecCCccccc
Q 005291 283 AETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHD 351 (704)
Q Consensus 283 ae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~---~G~c~~L~~~~~~~~ 351 (704)
++.|||+...++||.++ + +-+.....|+.||+-|.+ +=.+|+|+++...+.
T Consensus 550 GGlGINLt~Ad~VIiyD--------~----------dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEE 603 (1033)
T PLN03142 550 GGLGINLATADIVILYD--------S----------DWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 603 (1033)
T ss_pred cccCCchhhCCEEEEeC--------C----------CCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHH
Confidence 99999999999999733 2 345566678888888874 346899999887654
No 133
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.35 E-value=6.3e-13 Score=110.46 Aligned_cols=72 Identities=21% Similarity=0.269 Sum_probs=67.3
Q ss_pred CCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhH
Q 005291 246 MDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQA 325 (704)
Q Consensus 246 ~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~ 325 (704)
.++.+..+||+++.++|..+++.|..+..+|||||+++++|+|+|++++||..+. +.|..++
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~------------------~~~~~~~ 67 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDP------------------PWSPEEY 67 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSS------------------ESSHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccccccc------------------CCCHHHH
Confidence 3888999999999999999999999999999999999999999999999998553 6688999
Q ss_pred HhhccccCCC
Q 005291 326 NQRVGRAGRT 335 (704)
Q Consensus 326 ~QR~GRaGR~ 335 (704)
.|++||+||.
T Consensus 68 ~Q~~GR~~R~ 77 (78)
T PF00271_consen 68 IQRIGRAGRI 77 (78)
T ss_dssp HHHHTTSSTT
T ss_pred HHHhhcCCCC
Confidence 9999999996
No 134
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.32 E-value=4e-10 Score=133.24 Aligned_cols=135 Identities=10% Similarity=0.103 Sum_probs=86.8
Q ss_pred cchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCC
Q 005291 194 TSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNC 273 (704)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~ 273 (704)
.+|.....+.+..+. ..+|++||++++.+..+.+++.|... ...++.-..+.+ +.++.+.|+++.
T Consensus 630 ~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~----------~~~~l~Qg~~~~---~~~l~~~F~~~~ 694 (820)
T PRK07246 630 EVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW----------QVSHLAQEKNGT---AYNIKKRFDRGE 694 (820)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc----------CCcEEEeCCCcc---HHHHHHHHHcCC
Confidence 346666666665555 45789999999999999999888643 122322221233 344667777788
Q ss_pred cEEEEEcccccccccCCC--eEEEEeCCccccccccCC----------CCccccc--cccccHHhHHhhccccCCCC--C
Q 005291 274 RRFIVSTNIAETSLTVDG--VVYVIDCGYVKQRQYNPS----------SGMYSLD--VVQISKVQANQRVGRAGRTR--P 337 (704)
Q Consensus 274 ~kIlvaTniae~gidip~--v~~VId~g~~k~~~~~~~----------~g~~~l~--~~~iS~~~~~QR~GRaGR~~--~ 337 (704)
..|+++|+..-.|||+|+ ...||-.+++-..-.||. .|-.... ..|.....+.|-+||.=|.. .
T Consensus 695 ~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~ 774 (820)
T PRK07246 695 QQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQK 774 (820)
T ss_pred CeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCc
Confidence 899999999999999973 555665666543332321 1211111 12334566789999999984 5
Q ss_pred ceEEEe
Q 005291 338 GKCYRL 343 (704)
Q Consensus 338 G~c~~L 343 (704)
|..+.|
T Consensus 775 Gvv~il 780 (820)
T PRK07246 775 SAVLIL 780 (820)
T ss_pred EEEEEE
Confidence 776644
No 135
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.32 E-value=4.5e-11 Score=137.26 Aligned_cols=318 Identities=16% Similarity=0.161 Sum_probs=205.0
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceee---eeeecccccCcc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG---YAIRFEDRTSER 94 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg---~~~~~~~~~~~~ 94 (704)
+.+++++|.+|+|||||.....+++. ....++++++.|..+.+..+++.+...++.-.|..+- .....+-+....
T Consensus 1157 ~~nd~v~vga~~gsgkt~~ae~a~l~--~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~ 1234 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACAELALLR--PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQK 1234 (1674)
T ss_pred cccceEEEecCCCCchhHHHHHHhcC--CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhh
Confidence 35788999999999999887766665 4556799999999998888887776665544443332 122233334456
Q ss_pred cceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHH-----HHHHHHHHHHHHhccCcEEEEEecCC-ChHHHhcc
Q 005291 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTD-----ILLGLVKRLVNLRASKLKILITSATL-DGEKVSKF 168 (704)
Q Consensus 95 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d-----~l~~llk~l~~~~~~~~kiI~~SATl-~~~~~~~~ 168 (704)
.+|+++||+.+-.. + ..+++++.|.||.|+-+ +.. .+.. .+.+.....++++++.+|..+ ++..+ -+
T Consensus 1235 ~~vii~tpe~~d~l-q---~iQ~v~l~i~d~lh~ig-g~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~-ig 1307 (1674)
T KOG0951|consen 1235 GQVIISTPEQWDLL-Q---SIQQVDLFIVDELHLIG-GVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDL-IG 1307 (1674)
T ss_pred cceEEechhHHHHH-h---hhhhcceEeeehhhhhc-ccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhh-cc
Confidence 89999999987544 2 67889999999999533 111 1222 444444444589999999887 54445 34
Q ss_pred cCCCCccccC--CCcCceeEEecCCCCcchHHH---H----HHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhh
Q 005291 169 FSNCPTLNVP--GKLYPVEILHSKERPTSYLES---A----LKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRS 239 (704)
Q Consensus 169 ~~~~~~i~i~--~~~~pv~~~~~~~~~~~~~~~---~----~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~ 239 (704)
+....+++++ .|..|.+++........|... . ...+.. + ...+.+.+||+|+++.+..++.-+-.....
T Consensus 1308 ~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~-~-a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~ 1385 (1674)
T KOG0951|consen 1308 ASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVR-H-AGNRKPAIVFLPTRKHARLVAVDLVTFSHA 1385 (1674)
T ss_pred ccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHH-H-hcCCCCeEEEeccchhhhhhhhccchhhcc
Confidence 4445566554 367777777654443333221 1 112222 2 235678999999999999887765432110
Q ss_pred c----------CCC----CCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCcccccc
Q 005291 240 L----------DEG----SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQ 305 (704)
Q Consensus 240 ~----------~~~----~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~ 305 (704)
. ..+ ......|. |-+|+..++.-+-..|..|.+.|+|...- -.|+-...--+|| -| ...
T Consensus 1386 ~~~~~l~~~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvv-mg---t~~ 1458 (1674)
T KOG0951|consen 1386 DEPDYLLSELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVV-MG---TQY 1458 (1674)
T ss_pred CcHHHHHHHHhcchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEE-ec---cee
Confidence 0 000 01123333 88999999999988999999999887765 7777765433333 22 456
Q ss_pred ccCCCCccccccccccHHhHHhhccccCCCCCceEEEecC--CccccccCCCCCCC
Q 005291 306 YNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYP--STVYHDEFLDVTVP 359 (704)
Q Consensus 306 ~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~--~~~~~~~~~~~~~p 359 (704)
||.+...+ .+.+.+...|+.|+|.| .|+|+.++. +..|.+.+...+.|
T Consensus 1459 ydg~e~~~----~~y~i~~ll~m~G~a~~--~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1459 YDGKEHSY----EDYPIAELLQMVGLASG--AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred eccccccc----ccCchhHHHHHhhhhcC--CccEEEEecCchHHHHHHhccCcCc
Confidence 88776433 24456778999999998 788887764 44444435555555
No 136
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.27 E-value=3.2e-11 Score=117.24 Aligned_cols=147 Identities=14% Similarity=0.088 Sum_probs=92.8
Q ss_pred CCchHHHHHHHHHhcc-------CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCc
Q 005291 4 LPILQYEETIVETVEQ-------NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR 76 (704)
Q Consensus 4 LPi~~~~~~il~~l~~-------~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~ 76 (704)
+.++++|++++..+.. +..+++.+|||||||..+..++..... +++++.|+..++.|....+.......
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 4678999999988873 689999999999999665555554432 88889999999999998884333221
Q ss_pred cCcee--------ee--------eeecccccCcccceEEcchHHHHHHHHhCC------------CCCCCceEEEeCCCc
Q 005291 77 LGEEV--------GY--------AIRFEDRTSERTLIKYLTDGVLLREILSNP------------DLSPYSVIILDEAHE 128 (704)
Q Consensus 77 vg~~v--------g~--------~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~------------~l~~~~~IIiDEaHe 128 (704)
..... +. .............+.+.|...+........ .....++||+||+|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~ 157 (184)
T PF04851_consen 78 YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHH 157 (184)
T ss_dssp EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGC
T ss_pred hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhh
Confidence 11000 00 000001112356788999988877654311 345678999999994
Q ss_pred CCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 129 RSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 129 r~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
...... .+.+.. . ....+|+||||+.
T Consensus 158 -~~~~~~----~~~i~~-~-~~~~~l~lTATp~ 183 (184)
T PF04851_consen 158 -YPSDSS----YREIIE-F-KAAFILGLTATPF 183 (184)
T ss_dssp -THHHHH----HHHHHH-S-SCCEEEEEESS-S
T ss_pred -cCCHHH----HHHHHc-C-CCCeEEEEEeCcc
Confidence 333222 333333 3 3788999999974
No 137
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.26 E-value=2e-11 Score=140.63 Aligned_cols=164 Identities=16% Similarity=0.159 Sum_probs=113.4
Q ss_pred EEEEEecCCChH--HHhcccCCCCccccCCCcCceeEEecCC----CCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHH
Q 005291 152 KILITSATLDGE--KVSKFFSNCPTLNVPGKLYPVEILHSKE----RPTSYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (704)
Q Consensus 152 kiI~~SATl~~~--~~~~~~~~~~~i~i~~~~~pv~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~ 225 (704)
++-+||.|...+ .|.+.+ +-.++.+|... |+.-.-.+. ...+.....++.+...+ ..+.++||||++++.
T Consensus 535 kLaGMTGTA~te~~Ef~~iY-~L~Vv~IPTnr-P~~R~D~~d~vy~t~~eK~~Ali~~I~~~~--~~grpVLIft~Sve~ 610 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIY-KLDVVVIPTNK-PIVRKDMDDLVYKTRREKYNAIVLKVEELQ--KKGQPVLVGTASVEV 610 (1025)
T ss_pred hhcccCCCChhHHHHHHHHh-CCcEEECCCCC-CcceecCCCeEecCHHHHHHHHHHHHHHHh--hCCCCEEEEeCcHHH
Confidence 577788887432 244444 35566666532 222111111 11122333333333333 346799999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCC---CeEEE-----Ee
Q 005291 226 IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD---GVVYV-----ID 297 (704)
Q Consensus 226 i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip---~v~~V-----Id 297 (704)
++.+++.|... ++....+|+ ...+|...+..|..+...|+||||+|++|+||+ +|..| |.
T Consensus 611 sE~Ls~~L~~~----------gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIg 678 (1025)
T PRK12900 611 SETLSRMLRAK----------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILG 678 (1025)
T ss_pred HHHHHHHHHHc----------CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeC
Confidence 99999999875 666777887 567888888899989999999999999999999 45333 43
Q ss_pred CCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccc
Q 005291 298 CGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (704)
Q Consensus 298 ~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~ 349 (704)
+. .+-|...+.||.||+||. .||.+..+.+.++.
T Consensus 679 te------------------rhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 679 SE------------------RHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CC------------------CCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 22 356777889999999999 78999988887654
No 138
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.25 E-value=2.7e-10 Score=128.00 Aligned_cols=125 Identities=21% Similarity=0.232 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhcc-CCCCCCCcEE
Q 005291 198 ESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVF-SPPPPNCRRF 276 (704)
Q Consensus 198 ~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~-~~~~~g~~kI 276 (704)
.+.++.+...| ..+-+|||.+.+.++.+.++..|.+. ++....|++.-...| ..+. +.=. .-.|
T Consensus 414 ~Aii~ei~~~~--~~GrPVLVgt~sI~~SE~ls~~L~~~----------gI~h~vLNAk~~~~E-A~IIa~AG~--~gaV 478 (764)
T PRK12326 414 DAIVEHIAEVH--ETGQPVLVGTHDVAESEELAERLRAA----------GVPAVVLNAKNDAEE-ARIIAEAGK--YGAV 478 (764)
T ss_pred HHHHHHHHHHH--HcCCCEEEEeCCHHHHHHHHHHHHhC----------CCcceeeccCchHhH-HHHHHhcCC--CCcE
Confidence 34445555554 35669999999999999999999875 444455666533333 3333 3322 2469
Q ss_pred EEEcccccccccCCCeE-------EEEeCCccccccccCCCCcccccc-ccccHHhHHhhccccCCC-CCceEEEecCCc
Q 005291 277 IVSTNIAETSLTVDGVV-------YVIDCGYVKQRQYNPSSGMYSLDV-VQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (704)
Q Consensus 277 lvaTniae~gidip~v~-------~VId~g~~k~~~~~~~~g~~~l~~-~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~ 347 (704)
.||||.|++|-||.==. -|.. ..|+..+.+ .+.|.--=.|-.|||||+ .||.+-.+.|-+
T Consensus 479 TIATNMAGRGTDIkLg~~~~~~~~~V~~-----------~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSle 547 (764)
T PRK12326 479 TVSTQMAGRGTDIRLGGSDEADRDRVAE-----------LGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLE 547 (764)
T ss_pred EEEecCCCCccCeecCCCcccchHHHHH-----------cCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcc
Confidence 99999999999985100 1111 123333322 345666667999999999 688776665544
Q ss_pred c
Q 005291 348 V 348 (704)
Q Consensus 348 ~ 348 (704)
+
T Consensus 548 D 548 (764)
T PRK12326 548 D 548 (764)
T ss_pred h
Confidence 3
No 139
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.17 E-value=2.6e-11 Score=101.14 Aligned_cols=71 Identities=31% Similarity=0.406 Sum_probs=66.0
Q ss_pred CeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHH
Q 005291 247 DAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQAN 326 (704)
Q Consensus 247 ~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~ 326 (704)
++.+..+||++++++|..+++.|.++..+|+++|+++++|+|+|++++||..+. +.+...+.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~------------------~~~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL------------------PWSPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCC------------------CCCHHHHH
Confidence 678999999999999999999999999999999999999999999999997553 67889999
Q ss_pred hhccccCCC
Q 005291 327 QRVGRAGRT 335 (704)
Q Consensus 327 QR~GRaGR~ 335 (704)
|++||+||.
T Consensus 73 Q~~gR~~R~ 81 (82)
T smart00490 73 QRIGRAGRA 81 (82)
T ss_pred HhhcccccC
Confidence 999999996
No 140
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.16 E-value=7.5e-10 Score=127.40 Aligned_cols=102 Identities=20% Similarity=0.168 Sum_probs=65.3
Q ss_pred EEEEcCCCCcHHH--HHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeee----cccccCcccc
Q 005291 23 VVVIGETGSGKST--QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIR----FEDRTSERTL 96 (704)
Q Consensus 23 vii~gpTGsGKTt--~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~----~~~~~~~~~~ 96 (704)
-|....||+|||. .++.++... .|..+.++.|+..||.+-++.+...+.. .|..+|.-.. .+.+..-..+
T Consensus 98 ~iaEM~TGEGKTLvA~l~a~l~al---~G~~VhvvT~ndyLA~RD~e~m~~l~~~-lGl~v~~i~~~~~~~err~~Y~~d 173 (913)
T PRK13103 98 KIAEMRTGEGKTLVGTLAVYLNAL---SGKGVHVVTVNDYLARRDANWMRPLYEF-LGLSVGIVTPFQPPEEKRAAYAAD 173 (913)
T ss_pred ccccccCCCCChHHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHHHhcc-cCCEEEEECCCCCHHHHHHHhcCC
Confidence 4678899999993 333333332 3667888899999999999988765532 2444443211 1122223489
Q ss_pred eEEcchHHH-HHHHHh-------CCCCCCCceEEEeCCCc
Q 005291 97 IKYLTDGVL-LREILS-------NPDLSPYSVIILDEAHE 128 (704)
Q Consensus 97 I~~~T~g~L-l~~l~~-------~~~l~~~~~IIiDEaHe 128 (704)
|+|+|...+ ...|.. +....++.++||||+|.
T Consensus 174 I~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDs 213 (913)
T PRK13103 174 ITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDS 213 (913)
T ss_pred EEEEcccccccchhhccceechhhhcccccceeEechhhh
Confidence 999999876 112211 12347889999999994
No 141
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.12 E-value=1.2e-08 Score=122.78 Aligned_cols=140 Identities=16% Similarity=0.221 Sum_probs=90.3
Q ss_pred chHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCc
Q 005291 195 SYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCR 274 (704)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~ 274 (704)
.|.......+..+.. ..+|.+|||+++.+..+.+++.|...... .++.++. . ++....+.++.+.|+.+..
T Consensus 735 ~~~~~la~~i~~l~~-~~~g~~LVLFtSy~~l~~v~~~l~~~~~~------~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~ 805 (928)
T PRK08074 735 EYIEEVAAYIAKIAK-ATKGRMLVLFTSYEMLKKTYYNLKNEEEL------EGYVLLA-Q-GVSSGSRARLTKQFQQFDK 805 (928)
T ss_pred HHHHHHHHHHHHHHH-hCCCCEEEEECCHHHHHHHHHHHhhcccc------cCceEEe-c-CCCCCCHHHHHHHHHhcCC
Confidence 455566666666543 45689999999999999999999764210 1233322 2 2322345667777877888
Q ss_pred EEEEEcccccccccCCC--eEEEEeCCccccccccCC----------CCccccc--cccccHHhHHhhccccCCCC--Cc
Q 005291 275 RFIVSTNIAETSLTVDG--VVYVIDCGYVKQRQYNPS----------SGMYSLD--VVQISKVQANQRVGRAGRTR--PG 338 (704)
Q Consensus 275 kIlvaTniae~gidip~--v~~VId~g~~k~~~~~~~----------~g~~~l~--~~~iS~~~~~QR~GRaGR~~--~G 338 (704)
.|+++|.....|||+|| .+.||-.+++-..--||. .|-..+. ..|.....+.|-+||.=|.. .|
T Consensus 806 ~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G 885 (928)
T PRK08074 806 AILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRG 885 (928)
T ss_pred eEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceE
Confidence 89999999999999997 588887776543211111 1111111 12444566789999999984 47
Q ss_pred eEEEe
Q 005291 339 KCYRL 343 (704)
Q Consensus 339 ~c~~L 343 (704)
..+.|
T Consensus 886 ~v~il 890 (928)
T PRK08074 886 TVFVL 890 (928)
T ss_pred EEEEe
Confidence 66644
No 142
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.11 E-value=7.5e-08 Score=109.41 Aligned_cols=137 Identities=15% Similarity=0.104 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCC----C
Q 005291 196 YLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPP----P 271 (704)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~----~ 271 (704)
|.+...+.+..+. ...+|.+||.+++...++.+++.|...+ .+. +...|..++ +...++.|+ +
T Consensus 454 ~~~~~~~~~~~~~-~~~~G~~lvLfTS~~~~~~~~~~l~~~l---------~~~-~l~qg~~~~--~~~l~~~f~~~~~~ 520 (636)
T TIGR03117 454 WLENVSLSTAAIL-RKAQGGTLVLTTAFSHISAIGQLVELGI---------PAE-IVIQSEKNR--LASAEQQFLALYAN 520 (636)
T ss_pred HHHHHHHHHHHHH-HHcCCCEEEEechHHHHHHHHHHHHhhc---------CCC-EEEeCCCcc--HHHHHHHHHHhhcC
Confidence 4444555555554 3456899999999999999999997653 233 334555532 122333343 3
Q ss_pred CCcEEEEEcccccccccC--------CC--eEEEEeCCccccccccCC--------CCccccccccccHHhHHhhccccC
Q 005291 272 NCRRFIVSTNIAETSLTV--------DG--VVYVIDCGYVKQRQYNPS--------SGMYSLDVVQISKVQANQRVGRAG 333 (704)
Q Consensus 272 g~~kIlvaTniae~gidi--------p~--v~~VId~g~~k~~~~~~~--------~g~~~l~~~~iS~~~~~QR~GRaG 333 (704)
|...|+++|+.+-+|||+ || ++.||..-++-.. -||- .|-......|-....+.|-+||.=
T Consensus 521 ~~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~-~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLI 599 (636)
T TIGR03117 521 GIQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGL-NRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLV 599 (636)
T ss_pred CCCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCc-CChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCcee
Confidence 568999999999999999 33 7777765444222 2221 222222334555667789999999
Q ss_pred CC--C--CceEEEecCC
Q 005291 334 RT--R--PGKCYRLYPS 346 (704)
Q Consensus 334 R~--~--~G~c~~L~~~ 346 (704)
|. - .|....|=++
T Consensus 600 R~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 600 RHPDMPQNRRIHMLDGR 616 (636)
T ss_pred ecCCCcCceEEEEEeCC
Confidence 98 3 4766655444
No 143
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.09 E-value=1.1e-08 Score=116.17 Aligned_cols=291 Identities=18% Similarity=0.168 Sum_probs=167.9
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCc-ccc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSE-RTL 96 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~-~~~ 96 (704)
....+.+|.+|.||||||.+..++......++.+++++.-|+.++.+++.++... +.. ..+-|....+..... ..+
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~-~l~--gFv~Y~d~~~~~i~~~~~~ 123 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKA-GLS--GFVNYLDSDDYIIDGRPYD 123 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhc-CCC--cceeeeccccccccccccC
Confidence 4567899999999999998888888764456789999999999999999998542 111 122222111111111 123
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCc--CCCCHH------HHHHHHHHHHHHhccCcEEEEEecCCChHH---H
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHE--RSLNTD------ILLGLVKRLVNLRASKLKILITSATLDGEK---V 165 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHe--r~l~~d------~l~~llk~l~~~~~~~~kiI~~SATl~~~~---~ 165 (704)
-+++.-..|.|.. .+.+.++++|||||+-. +.+.+. ....+++.+++ .-.++|+|-||++... +
T Consensus 124 rLivqIdSL~R~~--~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~---~ak~VI~~DA~ln~~tvdFl 198 (824)
T PF02399_consen 124 RLIVQIDSLHRLD--GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIR---NAKTVIVMDADLNDQTVDFL 198 (824)
T ss_pred eEEEEehhhhhcc--cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHH---hCCeEEEecCCCCHHHHHHH
Confidence 3334444555543 34688899999999852 001111 12222333333 3568999999998654 3
Q ss_pred hcccCCCCccccCCC----cCcee-EEecCC-------------------------------------CCcchHHHHHHH
Q 005291 166 SKFFSNCPTLNVPGK----LYPVE-ILHSKE-------------------------------------RPTSYLESALKT 203 (704)
Q Consensus 166 ~~~~~~~~~i~i~~~----~~pv~-~~~~~~-------------------------------------~~~~~~~~~~~~ 203 (704)
+..-++.++-.+.+. .|.-. ..+.+. ....+.......
T Consensus 199 ~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~ 278 (824)
T PF02399_consen 199 ASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLAR 278 (824)
T ss_pred HHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHH
Confidence 333222222111110 00000 000000 001111111111
Q ss_pred HHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccc
Q 005291 204 AIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIA 283 (704)
Q Consensus 204 ~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTnia 283 (704)
+ ..+..|-||+.+....+.++++.... ...|+.++|.-+.+ .+ +.+ ++.+|++=|++.
T Consensus 279 L------~~gknIcvfsSt~~~~~~v~~~~~~~----------~~~Vl~l~s~~~~~---dv-~~W--~~~~VviYT~~i 336 (824)
T PF02399_consen 279 L------NAGKNICVFSSTVSFAEIVARFCARF----------TKKVLVLNSTDKLE---DV-ESW--KKYDVVIYTPVI 336 (824)
T ss_pred H------hCCCcEEEEeChHHHHHHHHHHHHhc----------CCeEEEEcCCCCcc---cc-ccc--cceeEEEEeceE
Confidence 1 34568889999999888888877654 55677777766554 22 223 468999999999
Q ss_pred cccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCCCceEEEecCCcccc
Q 005291 284 ETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYH 350 (704)
Q Consensus 284 e~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~~~ 350 (704)
..|++++...+=--+++.|...+- -+..+..|+.||+=.....+.|..+......
T Consensus 337 tvG~Sf~~~HF~~~f~yvk~~~~g------------pd~~s~~Q~lgRvR~l~~~ei~v~~d~~~~~ 391 (824)
T PF02399_consen 337 TVGLSFEEKHFDSMFAYVKPMSYG------------PDMVSVYQMLGRVRSLLDNEIYVYIDASGAR 391 (824)
T ss_pred EEEeccchhhceEEEEEecCCCCC------------CcHHHHHHHHHHHHhhccCeEEEEEeccccc
Confidence 999999865432222333322211 2445678999999666777777666554443
No 144
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.02 E-value=1.7e-08 Score=115.18 Aligned_cols=117 Identities=19% Similarity=0.207 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCC-CcEE
Q 005291 198 ESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN-CRRF 276 (704)
Q Consensus 198 ~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g-~~kI 276 (704)
.+.++.+...| ..+-+|||.+.+.+..+.++..|.+. ++..-.|++.-...|- .++. ..| .-.|
T Consensus 413 ~Aii~ei~~~~--~~gqPVLVgT~SIe~SE~ls~~L~~~----------gi~h~vLNAk~~e~EA-~IIa--~AG~~GaV 477 (925)
T PRK12903 413 KAVVKEVKRVH--KKGQPILIGTAQVEDSETLHELLLEA----------NIPHTVLNAKQNAREA-EIIA--KAGQKGAI 477 (925)
T ss_pred HHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC----------CCCceeecccchhhHH-HHHH--hCCCCCeE
Confidence 33444444444 34679999999999999999999875 3433445554322232 2332 223 3479
Q ss_pred EEEcccccccccCCCeE--------EEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCc
Q 005291 277 IVSTNIAETSLTVDGVV--------YVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (704)
Q Consensus 277 lvaTniae~gidip~v~--------~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~ 347 (704)
.||||.|++|-||.--. +||-+.+ +-|.--=.|-.|||||+ .||.+-.+.|-+
T Consensus 478 TIATNMAGRGTDI~Lg~~V~~~GGLhVIgTer------------------heSrRIDnQLrGRaGRQGDpGss~f~lSLe 539 (925)
T PRK12903 478 TIATNMAGRGTDIKLSKEVLELGGLYVLGTDK------------------AESRRIDNQLRGRSGRQGDVGESRFFISLD 539 (925)
T ss_pred EEecccccCCcCccCchhHHHcCCcEEEeccc------------------CchHHHHHHHhcccccCCCCCcceEEEecc
Confidence 99999999999996222 5553222 34444445999999999 588765444433
No 145
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.00 E-value=8.1e-09 Score=118.51 Aligned_cols=113 Identities=18% Similarity=0.173 Sum_probs=68.1
Q ss_pred HHHHhccCCEEEEEcCCCCcHH--HHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHH---HHhCCccCceeeeeeec
Q 005291 13 IVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVA---QELGVRLGEEVGYAIRF 87 (704)
Q Consensus 13 il~~l~~~~~vii~gpTGsGKT--t~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva---~~~~~~vg~~vg~~~~~ 87 (704)
++-.+.-++--+....||.||| ..+|.++... .|..|-++.+...||..-++.+. +.+|+.+|...+.....
T Consensus 82 lig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL---~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~ 158 (870)
T CHL00122 82 LIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNAL---TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSE 158 (870)
T ss_pred hhhhHhhcCCccccccCCCCchHHHHHHHHHHHh---cCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCChH
Confidence 4444444455678999999999 3344444433 25567777788888887776654 55666665443321222
Q ss_pred ccccCcccceEEcchHHH-----HHHHHhC---CCCCCCceEEEeCCCc
Q 005291 88 EDRTSERTLIKYLTDGVL-----LREILSN---PDLSPYSVIILDEAHE 128 (704)
Q Consensus 88 ~~~~~~~~~I~~~T~g~L-----l~~l~~~---~~l~~~~~IIiDEaHe 128 (704)
+.+..-.++|+|+|+.-+ ...+... ...+.+.+.|||||+-
T Consensus 159 err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDS 207 (870)
T CHL00122 159 ERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDS 207 (870)
T ss_pred HHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchh
Confidence 222334678999998643 2222111 1356688999999884
No 146
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.00 E-value=6e-09 Score=119.68 Aligned_cols=134 Identities=12% Similarity=0.027 Sum_probs=83.1
Q ss_pred EEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhC-CccCceeee---eeecc---cccCcccc
Q 005291 24 VVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG-VRLGEEVGY---AIRFE---DRTSERTL 96 (704)
Q Consensus 24 ii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~-~~vg~~vg~---~~~~~---~~~~~~~~ 96 (704)
+..+-+|||||.....++.... ..|+.++++.|...++.|+.+++...++ ..+....+. ..+++ .......+
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l-~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~ 242 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATL-RAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR 242 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHH-HcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc
Confidence 4445579999966555554432 2467899999999999999999998887 333221111 01111 11234567
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHH-----HHHHHHHHHHHhccCcEEEEEecCCChHHHh
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI-----LLGLVKRLVNLRASKLKILITSATLDGEKVS 166 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~-----l~~llk~l~~~~~~~~kiI~~SATl~~~~~~ 166 (704)
|++.|-.-+. .-+.++++|||||=|+-+...+- ... +-...... .+..+|+.|||...+.+.
T Consensus 243 IViGtRSAvF------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRd-vA~~Ra~~-~~~~lvLgSaTPSles~~ 309 (665)
T PRK14873 243 VVVGTRSAVF------APVEDLGLVAIWDDGDDLLAEPRAPYPHARE-VALLRAHQ-HGCALLIGGHARTAEAQA 309 (665)
T ss_pred EEEEcceeEE------eccCCCCEEEEEcCCchhhcCCCCCCccHHH-HHHHHHHH-cCCcEEEECCCCCHHHHH
Confidence 8888743221 14788999999999964433321 111 11122223 389999999999877654
No 147
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.85 E-value=1.7e-07 Score=104.11 Aligned_cols=116 Identities=23% Similarity=0.261 Sum_probs=87.7
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCC---CcEEEEEcccccccc
Q 005291 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN---CRRFIVSTNIAETSL 287 (704)
Q Consensus 211 ~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g---~~kIlvaTniae~gi 287 (704)
+.+.+||||- ..-.+-+.|++.+.- .++...-+.|+++.++|...++.|... +.-.+++|-+.+-||
T Consensus 485 ~~GhRVLIFS----Qmt~mLDILeDyc~~------R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGI 554 (971)
T KOG0385|consen 485 EQGHRVLIFS----QMTRMLDILEDYCML------RGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGI 554 (971)
T ss_pred hCCCeEEEeH----HHHHHHHHHHHHHHh------cCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccc
Confidence 4456899994 344455555554322 378899999999999999998888654 344688999999999
Q ss_pred cCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCCCceEEEecCCccccc
Q 005291 288 TVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (704)
Q Consensus 288 dip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~~~~ 351 (704)
|+-..++||- ||+.= .|-.-.+|.+|+-|.|-..+=++|||.+....+.
T Consensus 555 NL~aADtVIl--------yDSDW-------NPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe 603 (971)
T KOG0385|consen 555 NLTAADTVIL--------YDSDW-------NPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEE 603 (971)
T ss_pred ccccccEEEE--------ecCCC-------CchhhhHHHHHHHhhCCcCceEEEEEeccchHHH
Confidence 9998888884 33211 2445567889999999999999999999887654
No 148
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.80 E-value=1.5e-07 Score=108.15 Aligned_cols=113 Identities=19% Similarity=0.183 Sum_probs=66.4
Q ss_pred HHHHhccCCEEEEEcCCCCcHHH--HHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHH---HHhCCccCceeeeeeec
Q 005291 13 IVETVEQNPVVVVIGETGSGKST--QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVA---QELGVRLGEEVGYAIRF 87 (704)
Q Consensus 13 il~~l~~~~~vii~gpTGsGKTt--~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva---~~~~~~vg~~vg~~~~~ 87 (704)
++-.+.=++--|....||-|||. .+|.++... . |..|-++.+...||..-++.+. +.+|+.+|...+.....
T Consensus 91 liGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL--~-GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~ 167 (939)
T PRK12902 91 LIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNAL--T-GKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPE 167 (939)
T ss_pred HHhhhhhcCCceeeecCCCChhHHHHHHHHHHhh--c-CCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChH
Confidence 44443333444778899999993 334444332 2 4456666666777776666544 55566655433311122
Q ss_pred ccccCcccceEEcchHHH-----HHHHHhC---CCCCCCceEEEeCCCc
Q 005291 88 EDRTSERTLIKYLTDGVL-----LREILSN---PDLSPYSVIILDEAHE 128 (704)
Q Consensus 88 ~~~~~~~~~I~~~T~g~L-----l~~l~~~---~~l~~~~~IIiDEaHe 128 (704)
+.+..-.++|+|+|+..+ ...+..+ .....+.+.|||||+.
T Consensus 168 err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDS 216 (939)
T PRK12902 168 ERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDS 216 (939)
T ss_pred HHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccc
Confidence 223334689999999866 3333222 2457788899999884
No 149
>COG4889 Predicted helicase [General function prediction only]
Probab=98.78 E-value=1.2e-08 Score=113.77 Aligned_cols=313 Identities=18% Similarity=0.202 Sum_probs=172.4
Q ss_pred chHHHHHHHHHhccC----CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCc--
Q 005291 6 ILQYEETIVETVEQN----PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE-- 79 (704)
Q Consensus 6 i~~~~~~il~~l~~~----~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~-- 79 (704)
..+||++.+++..++ .--=++...|+|||.....+..... ..+|++++|...|..|..+.........+-.
T Consensus 162 ~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala---~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~a 238 (1518)
T COG4889 162 PRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALA---AARILFLVPSISLLSQTLREWTAQKELDFRASA 238 (1518)
T ss_pred CChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHh---hhheEeecchHHHHHHHHHHHhhccCccceeEE
Confidence 467888887776532 2223344679999944444444432 3689999999999999888776544332111
Q ss_pred -----eeee---eeecc-------------------cccCcccceEEcchHHHHHHHH-hCCCCCCCceEEEeCCCcCCC
Q 005291 80 -----EVGY---AIRFE-------------------DRTSERTLIKYLTDGVLLREIL-SNPDLSPYSVIILDEAHERSL 131 (704)
Q Consensus 80 -----~vg~---~~~~~-------------------~~~~~~~~I~~~T~g~Ll~~l~-~~~~l~~~~~IIiDEaHer~l 131 (704)
.|+- .+... .+...+--|+|+|.+.+.+.-. ...-+..+++||.|||| |+.
T Consensus 239 VcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAH-RTt 317 (1518)
T COG4889 239 VCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAH-RTT 317 (1518)
T ss_pred EecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchh-ccc
Confidence 1110 00000 0011123477888888876652 23468889999999999 654
Q ss_pred CHHHHHHH---HHHHHH--HhccCcEEEEEecCCCh--HHHhcc----------cCC----CCccccCC----------C
Q 005291 132 NTDILLGL---VKRLVN--LRASKLKILITSATLDG--EKVSKF----------FSN----CPTLNVPG----------K 180 (704)
Q Consensus 132 ~~d~l~~l---lk~l~~--~~~~~~kiI~~SATl~~--~~~~~~----------~~~----~~~i~i~~----------~ 180 (704)
.....-.- ..++.. .. +..+.+.|+||+-. +....- +++ .+.+.--| .
T Consensus 318 Ga~~a~dd~saFt~vHs~~ni-Ka~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLT 396 (1518)
T COG4889 318 GATLAGDDKSAFTRVHSDQNI-KAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLT 396 (1518)
T ss_pred cceecccCcccceeecCcchh-HHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhhhc
Confidence 33211100 000000 00 13456788888621 111000 000 00000000 0
Q ss_pred cCceeEEecC-------------CCCcchHHHHHHHHHHHHc----cC--------------CCCCEEEEeCCHHHHHHH
Q 005291 181 LYPVEILHSK-------------ERPTSYLESALKTAIDIHV----RE--------------PEGDVLIFMTGQDDIEKL 229 (704)
Q Consensus 181 ~~pv~~~~~~-------------~~~~~~~~~~~~~~~~i~~----~~--------------~~g~iLVFl~~~~~i~~~ 229 (704)
.|.|-+.-.. .+........+..++-.+. .. +..+.+-||.+.++-..+
T Consensus 397 DYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i 476 (1518)
T COG4889 397 DYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQI 476 (1518)
T ss_pred cceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHH
Confidence 1111111000 0111111112222222221 00 112567888888888777
Q ss_pred HHHHHHHhhh----cCCC-CCCCeEEEeccCCCCHHHHhhcc---CCCCCCCcEEEEEcccccccccCCCeEEEEeCCcc
Q 005291 230 VSKLEDKIRS----LDEG-SCMDAVILPLHGSLPPEMQVRVF---SPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYV 301 (704)
Q Consensus 230 ~~~L~~~~~~----~~~~-~~~~~~v~~lh~~l~~~~r~~v~---~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~ 301 (704)
++.+...... +..+ ....+.+-...|.|..-+|.... ..|++.+.||+----++..|||+|..+-||-
T Consensus 477 ~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViF---- 552 (1518)
T COG4889 477 AESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIF---- 552 (1518)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEE----
Confidence 7776544321 1111 12345556667889888875543 3578889999998899999999999999995
Q ss_pred ccccccCCCCccccccccccHHhHHhhccccCCCCCceEE
Q 005291 302 KQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCY 341 (704)
Q Consensus 302 k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~ 341 (704)
|||+. |....+|-.||..|..+|+-|
T Consensus 553 ----f~pr~----------smVDIVQaVGRVMRKa~gK~y 578 (1518)
T COG4889 553 ----FDPRS----------SMVDIVQAVGRVMRKAKGKKY 578 (1518)
T ss_pred ----ecCch----------hHHHHHHHHHHHHHhCcCCcc
Confidence 77765 666778999999999998755
No 150
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.58 E-value=3.1e-06 Score=94.75 Aligned_cols=125 Identities=19% Similarity=0.298 Sum_probs=95.7
Q ss_pred HHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCc--EEEEE
Q 005291 202 KTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCR--RFIVS 279 (704)
Q Consensus 202 ~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~--kIlva 279 (704)
..++..+... +..+|+|-.++....-+..+|... .++..+-+.|..+...|....+.|.++.. -.|++
T Consensus 536 ~~ll~~W~kq-g~rvllFsqs~~mLdilE~fL~~~---------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLT 605 (923)
T KOG0387|consen 536 AKLLKDWKKQ-GDRVLLFSQSRQMLDILESFLRRA---------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLT 605 (923)
T ss_pred HHHHHHHhhC-CCEEEEehhHHHHHHHHHHHHHhc---------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEE
Confidence 3444444433 348999998888777776666642 48999999999999999999999997754 35789
Q ss_pred cccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCCCceEEEecCCccccc
Q 005291 280 TNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (704)
Q Consensus 280 Tniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~~~~ 351 (704)
|-+.+-|+|+-+.+-||- |||.= .|.+-.++.-|+=|-|-...=.+|||.+....+.
T Consensus 606 TrvGGLGlNLTgAnRVII--------fDPdW-------NPStD~QAreRawRiGQkkdV~VYRL~t~gTIEE 662 (923)
T KOG0387|consen 606 TRVGGLGLNLTGANRVII--------FDPDW-------NPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEE 662 (923)
T ss_pred ecccccccccccCceEEE--------ECCCC-------CCccchHHHHHHHhhcCccceEEEEEecCCcHHH
Confidence 999999999998888885 55432 2445567788888888888888999998877654
No 151
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.53 E-value=6.4e-06 Score=94.29 Aligned_cols=91 Identities=20% Similarity=0.256 Sum_probs=65.5
Q ss_pred CCeEEEeccCCCCHHHHhhccCCCCCC--C-cEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccH
Q 005291 246 MDAVILPLHGSLPPEMQVRVFSPPPPN--C-RRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISK 322 (704)
Q Consensus 246 ~~~~v~~lh~~l~~~~r~~v~~~~~~g--~-~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~ 322 (704)
.++.++.+||.|+..+|+.+.+.|.+. . .-.+.+|-+.+.||++=|...||- ||+. -.|.--
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil--------~D~d-------WNPa~d 682 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL--------FDPD-------WNPAVD 682 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE--------eCCC-------CCchhH
Confidence 388999999999999999999888653 2 345677788899999988888885 3322 123334
Q ss_pred HhHHhhccccCCCCCceEEEecCCccccc
Q 005291 323 VQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (704)
Q Consensus 323 ~~~~QR~GRaGR~~~G~c~~L~~~~~~~~ 351 (704)
.+|+-|+=|-|-.++-..|||.+...-+.
T Consensus 683 ~QAmaR~~RdGQKk~v~iYrLlatGtiEE 711 (776)
T KOG0390|consen 683 QQAMARAWRDGQKKPVYIYRLLATGTIEE 711 (776)
T ss_pred HHHHHHhccCCCcceEEEEEeecCCCchH
Confidence 44455555555557788899998776654
No 152
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.52 E-value=1.7e-06 Score=100.80 Aligned_cols=139 Identities=22% Similarity=0.256 Sum_probs=97.4
Q ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCC---CcEEEEEccccccc
Q 005291 210 REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN---CRRFIVSTNIAETS 286 (704)
Q Consensus 210 ~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g---~~kIlvaTniae~g 286 (704)
.+.+.+||||-.=+....-++++|... ++..--+.|+++.+.|+..++.|... ..-.|+||-+.+-|
T Consensus 696 k~~GHrVLIFSQMVRmLDIL~eYL~~r----------~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLG 765 (1373)
T KOG0384|consen 696 KEGGHRVLIFSQMVRMLDILAEYLSLR----------GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLG 765 (1373)
T ss_pred hcCCceEEEhHHHHHHHHHHHHHHHHc----------CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCccc
Confidence 345679999976666666666666654 67777799999999999998888653 46789999999999
Q ss_pred ccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCCCceEEEecCCccccccCCCCCCCccccCCh
Q 005291 287 LTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSL 366 (704)
Q Consensus 287 idip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~~~~~~~~~~~pei~r~~l 366 (704)
||+-..+.||.++ ..|||.. -.+|.-|+-|.|-...=.+|||.|+..++.+|.+..- +..-|
T Consensus 766 INLatADTVIIFD----SDWNPQN-----------DLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk---~KmvL 827 (1373)
T KOG0384|consen 766 INLATADTVIIFD----SDWNPQN-----------DLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAK---LKMVL 827 (1373)
T ss_pred ccccccceEEEeC----CCCCcch-----------HHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHH---HHhhh
Confidence 9998877777422 2244443 3345556666666666689999999999874332111 12346
Q ss_pred HHHHHhhccc
Q 005291 367 AGSVLYLKSL 376 (704)
Q Consensus 367 ~~~~L~l~~l 376 (704)
+..|++....
T Consensus 828 D~aVIQ~m~t 837 (1373)
T KOG0384|consen 828 DHAVIQRMDT 837 (1373)
T ss_pred HHHHHHhhcc
Confidence 7777766543
No 153
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.37 E-value=2.7e-06 Score=83.60 Aligned_cols=127 Identities=27% Similarity=0.347 Sum_probs=82.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE--EEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccceE
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGI--IGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~--ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I~ 98 (704)
++++++||||+||||.+..+....... +.+ ++.+-..|+.+.++.+.+++.++..+.. .+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~-----~~~~---------- 65 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVPFYV-----ARTE---------- 65 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE-----SSTT----------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhccccch-----hhcc----------
Confidence 478999999999998777776655444 333 3445677999999999999999865311 0000
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHH
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKV 165 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~ 165 (704)
..+..+.+........+++++|+||-+. |+........-++.+.....+.-.++++|||...+.+
T Consensus 66 -~~~~~~~~~~l~~~~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 66 -SDPAEIAREALEKFRKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp -SCHHHHHHHHHHHHHHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred -hhhHHHHHHHHHHHhhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 0122233222221123468999999998 6666555556677777766547788999999976654
No 154
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.35 E-value=5.9e-05 Score=80.49 Aligned_cols=302 Identities=17% Similarity=0.184 Sum_probs=164.5
Q ss_pred HHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccc
Q 005291 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDR 90 (704)
Q Consensus 11 ~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~ 90 (704)
+-+.-+++.|.-+++.-+-|-|||.|+..+..... ...-+++++|- .+-...++.+...++...- +-.-.+.++.
T Consensus 205 eGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyr--aEwplliVcPA-svrftWa~al~r~lps~~p--i~vv~~~~D~ 279 (689)
T KOG1000|consen 205 EGVIFALERGGRILLADEMGLGKTIQALAIARYYR--AEWPLLIVCPA-SVRFTWAKALNRFLPSIHP--IFVVDKSSDP 279 (689)
T ss_pred hhHHHHHhcCCeEEEecccccchHHHHHHHHHHHh--hcCcEEEEecH-HHhHHHHHHHHHhcccccc--eEEEecccCC
Confidence 34566788899999999999999977766655432 24467778883 3333445555554443211 1111111221
Q ss_pred c---CcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCc-CCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC----h
Q 005291 91 T---SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHE-RSLNTDILLGLVKRLVNLRASKLKILITSATLD----G 162 (704)
Q Consensus 91 ~---~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHe-r~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~----~ 162 (704)
. .....|.+++.+++...-- --.-..+.+||+||.|. +...+.. .+.+......-.++|++|.|+. .
T Consensus 280 ~~~~~t~~~v~ivSye~ls~l~~-~l~~~~~~vvI~DEsH~Lk~sktkr----~Ka~~dllk~akhvILLSGTPavSRP~ 354 (689)
T KOG1000|consen 280 LPDVCTSNTVAIVSYEQLSLLHD-ILKKEKYRVVIFDESHMLKDSKTKR----TKAATDLLKVAKHVILLSGTPAVSRPS 354 (689)
T ss_pred ccccccCCeEEEEEHHHHHHHHH-HHhcccceEEEEechhhhhccchhh----hhhhhhHHHHhhheEEecCCcccCCch
Confidence 1 1235688888887653321 11223589999999994 1111111 2333332222457999999973 2
Q ss_pred HHHh-------cccCC--------CCc------------------------------------cccCCCcCceeEEecCC
Q 005291 163 EKVS-------KFFSN--------CPT------------------------------------LNVPGKLYPVEILHSKE 191 (704)
Q Consensus 163 ~~~~-------~~~~~--------~~~------------------------------------i~i~~~~~pv~~~~~~~ 191 (704)
+.+. .+|.+ |.. -..|.+.. ++.|...
T Consensus 355 elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr--~Vv~~~~ 432 (689)
T KOG1000|consen 355 ELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRR--EVVYVSG 432 (689)
T ss_pred hhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccce--EEEEEcC
Confidence 2211 11110 000 00111111 1111111
Q ss_pred C-Ccc----hHHHHH---------------------------HHHHHH------HccCCCCCEEEEeCCHHHHHHHHHHH
Q 005291 192 R-PTS----YLESAL---------------------------KTAIDI------HVREPEGDVLIFMTGQDDIEKLVSKL 233 (704)
Q Consensus 192 ~-~~~----~~~~~~---------------------------~~~~~i------~~~~~~g~iLVFl~~~~~i~~~~~~L 233 (704)
. ... .+.+.. ..+.+. ....++-+.+||+.-..-.+.+...+
T Consensus 433 gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~ 512 (689)
T KOG1000|consen 433 GRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEV 512 (689)
T ss_pred CccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHH
Confidence 0 000 000000 001110 01234568999999888888888877
Q ss_pred HHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCC-Cc-EEEEEcccccccccCCCeEEEEeCCccccccccCCCC
Q 005291 234 EDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN-CR-RFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (704)
Q Consensus 234 ~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g-~~-kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g 311 (704)
.+. ++...-+.|..++.+|....+.|... +. --|++-..+.+|+|+..-+.||-.-+ .|||.
T Consensus 513 ~~r----------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL----~wnPg-- 576 (689)
T KOG1000|consen 513 NKR----------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAEL----HWNPG-- 576 (689)
T ss_pred HHc----------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEe----cCCCc--
Confidence 765 67778889999999999998888754 23 34677789999999999999996332 33332
Q ss_pred ccccccccccHHhHHhhccccCCCCCceEEEecCCccc
Q 005291 312 MYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVY 349 (704)
Q Consensus 312 ~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~~ 349 (704)
-..++.-|+-|.|-...=..|-|+-+...
T Consensus 577 ---------vLlQAEDRaHRiGQkssV~v~ylvAKgT~ 605 (689)
T KOG1000|consen 577 ---------VLLQAEDRAHRIGQKSSVFVQYLVAKGTA 605 (689)
T ss_pred ---------eEEechhhhhhccccceeeEEEEEecCch
Confidence 22344556666666644333444444433
No 155
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.29 E-value=1.4e-05 Score=84.90 Aligned_cols=129 Identities=28% Similarity=0.316 Sum_probs=90.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcC-CCCCcE-EEE-cchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCccc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHG-YTKSGI-IGV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~-~~~~~~-ilv-~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~ 95 (704)
+++++.++||||.||||.+..+..... .....+ .++ +--.|+.|.++.+..++.+++++
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------ 263 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------ 263 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce------------------
Confidence 388999999999999966655555443 222333 334 44569999999999999998764
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhcccC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS 170 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~~~ 170 (704)
.++-++.-|...+. .+.++++|.+|=+- |+........-++.+.....+--..+.+|||...+.+.+.+.
T Consensus 264 -~vv~~~~el~~ai~---~l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 264 -EVVYSPKELAEAIE---ALRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred -EEecCHHHHHHHHH---HhhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHH
Confidence 22335555555544 46788999999998 666655555557777766654557788999998777665543
No 156
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.26 E-value=9.7e-07 Score=80.81 Aligned_cols=115 Identities=22% Similarity=0.403 Sum_probs=65.7
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCC-----CCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccC
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYT-----KSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTS 92 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~~~~-----~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~ 92 (704)
+++..++|.||+|+|||+++..++...... ....+.+..|.......++..+...++.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 456789999999999999998888765321 23455566665555677788888877755322
Q ss_pred cccceEEcchH----HHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecC
Q 005291 93 ERTLIKYLTDG----VLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (704)
Q Consensus 93 ~~~~I~~~T~g----~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SAT 159 (704)
-.+.. .+.+.+.... ..+|||||+|... . ...+..++.+.. . .++++|+++.+
T Consensus 69 ------~~~~~~l~~~~~~~l~~~~----~~~lviDe~~~l~-~-~~~l~~l~~l~~-~-~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 ------RQTSDELRSLLIDALDRRR----VVLLVIDEADHLF-S-DEFLEFLRSLLN-E-SNIKVVLVGTP 125 (131)
T ss_dssp ------TS-HHHHHHHHHHHHHHCT----EEEEEEETTHHHH-T-HHHHHHHHHHTC-S-CBEEEEEEESS
T ss_pred ------cCCHHHHHHHHHHHHHhcC----CeEEEEeChHhcC-C-HHHHHHHHHHHh-C-CCCeEEEEECh
Confidence 11222 2333333322 2699999999521 3 334444555554 2 36777776543
No 157
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.23 E-value=7.1e-06 Score=78.43 Aligned_cols=120 Identities=24% Similarity=0.250 Sum_probs=79.8
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc-chhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT-QPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSER 94 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~-~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~ 94 (704)
.+.+|+.+.|.||+||||||++..+....... .+.|.+- .+.... .... .. ...+||...
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~v~~~g~~~~~~--~~~~----~~----~~~i~~~~q-------- 82 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPD-SGEILVDGKEVSFA--SPRD----AR----RAGIAMVYQ-------- 82 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEECCcC--CHHH----HH----hcCeEEEEe--------
Confidence 36789999999999999999999887766544 3444432 121110 0000 00 112343221
Q ss_pred cceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 95 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.|+..+..+....+.+.+++++||+- ..+|......+...+......+..+|+.|..+
T Consensus 83 -----LS~G~~qrl~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 142 (163)
T cd03216 83 -----LSVGERQMVEIARALARNARLLILDEPT-AALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142 (163)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 7889888888887788899999999997 78998887776666655543356677776654
No 158
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.23 E-value=1.6e-06 Score=87.16 Aligned_cols=148 Identities=24% Similarity=0.322 Sum_probs=90.6
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcc--------------hhhHHH-----HHHHHHHHHHhCCc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ--------------PRRVAA-----VSVARRVAQELGVR 76 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~--------------P~r~la-----~~~a~rva~~~~~~ 76 (704)
.+..|+.+.|+||+|+||||++..++.......|...+.-. |-+... ..+.+-+. +|.
T Consensus 26 ~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~--~g~- 102 (254)
T COG1121 26 SVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVL--LGR- 102 (254)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHH--ccC-
Confidence 35689999999999999999999999866654443322222 211100 01111110 110
Q ss_pred cCceeeeeeecccc---------------cCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHH
Q 005291 77 LGEEVGYAIRFEDR---------------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK 141 (704)
Q Consensus 77 vg~~vg~~~~~~~~---------------~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk 141 (704)
....|+--+.... .-.+..|--.+.|.+.|.++...+.++.+++++||.- -++|......++.
T Consensus 103 -~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~-~gvD~~~~~~i~~ 180 (254)
T COG1121 103 -YGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPF-TGVDVAGQKEIYD 180 (254)
T ss_pred -cccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCc-ccCCHHHHHHHHH
Confidence 0111110000000 0023456668999999999999999999999999997 6888887777666
Q ss_pred HHHHHhccCcEEEEEecCCChHHHhcccC
Q 005291 142 RLVNLRASKLKILITSATLDGEKVSKFFS 170 (704)
Q Consensus 142 ~l~~~~~~~~kiI~~SATl~~~~~~~~~~ 170 (704)
-+...+..+..|++.|.-+ ....+|++
T Consensus 181 lL~~l~~eg~tIl~vtHDL--~~v~~~~D 207 (254)
T COG1121 181 LLKELRQEGKTVLMVTHDL--GLVMAYFD 207 (254)
T ss_pred HHHHHHHCCCEEEEEeCCc--HHhHhhCC
Confidence 6666665456666666654 45666664
No 159
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.22 E-value=2.2e-06 Score=83.26 Aligned_cols=134 Identities=22% Similarity=0.225 Sum_probs=81.4
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhHHHHHHHHHHHHHhCCccCceeeeeeecccc---c
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDR---T 91 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~---~ 91 (704)
.+.+|+.+.|+||+||||||++..+....... .+.|.+ -.+..... +....+. ..++|....... .
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~-~~~~~~~--------~~i~~~~q~~~~~~~~ 91 (178)
T cd03229 22 NIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD-SGSILIDGEDLTDLE-DELPPLR--------RRIGMVFQDFALFPHL 91 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccc-hhHHHHh--------hcEEEEecCCccCCCC
Confidence 35689999999999999999999887765544 344443 22211100 0001111 122322111000 0
Q ss_pred CcccceEE-cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 92 SERTLIKY-LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 92 ~~~~~I~~-~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
+-.-.+.+ .+.|+..+..+....+.+..++|+||.. ..+|.+....+.+.+...... +..+|+.|.-+
T Consensus 92 t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 161 (178)
T cd03229 92 TVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPT-SALDPITRREVRALLKSLQAQLGITVVLVTHDL 161 (178)
T ss_pred CHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 11112333 8889988888887788899999999998 789998877766666555442 35666666643
No 160
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.22 E-value=1.1e-05 Score=77.99 Aligned_cols=111 Identities=18% Similarity=0.215 Sum_probs=77.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCccc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~ 95 (704)
.+.+|+.+.|+||+||||||++..+....... .+.|.+-- ..++|.....
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g----------------------~~i~~~~q~~------- 70 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWDG----------------------ITPVYKPQYI------- 70 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEECC----------------------EEEEEEcccC-------
Confidence 66889999999999999999999887765544 44454321 1133321100
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccC-cEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK-LKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~-~kiI~~SATl 160 (704)
. .+.|+..+.......+.+.+++++||.- ..+|......+...+....... ..+|+.|..+
T Consensus 71 ~---LSgGq~qrv~laral~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 132 (177)
T cd03222 71 D---LSGGELQRVAIAAALLRNATFYLFDEPS-AYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL 132 (177)
T ss_pred C---CCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 0 7888888877777788899999999998 7899887776666665543323 5677766654
No 161
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.20 E-value=1.7e-05 Score=85.70 Aligned_cols=128 Identities=22% Similarity=0.258 Sum_probs=79.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCC---CCcEE--EEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHGYT---KSGII--GVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSER 94 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~~~---~~~~i--lv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~ 94 (704)
+.+++++||||+||||.+..+....... .+.+| +-+-+.|..+..+.+.+++.+|.++ .+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv--~~~------------ 239 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV--KAI------------ 239 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce--Eee------------
Confidence 4689999999999998877666543321 23333 3355778888888888877776653 111
Q ss_pred cceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccC-cEEEEEecCCChHHHhcccC
Q 005291 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK-LKILITSATLDGEKVSKFFS 170 (704)
Q Consensus 95 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~-~kiI~~SATl~~~~~~~~~~ 170 (704)
-++..+...+. .+.++++||||++. |+......+.-++.++.....+ -.++++|||.....+.+.|.
T Consensus 240 -----~~~~~l~~~L~---~~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~ 307 (388)
T PRK12723 240 -----ESFKDLKEEIT---QSKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFH 307 (388)
T ss_pred -----CcHHHHHHHHH---HhCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 12233333332 24679999999998 5543222233345555433223 47899999998777665553
No 162
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.18 E-value=3e-06 Score=81.83 Aligned_cols=130 Identities=27% Similarity=0.328 Sum_probs=80.4
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhHHHHHHHHHHHHHhCCccCceeeeeeeccccc---
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRT--- 91 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~--- 91 (704)
.+.+|+.+.|+||+||||||++..+....... .+.|.+ -.+..... .... ..++|........
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~----~~~~--------~~i~~~~q~~~~~~~~ 88 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD-SGEIKVLGKDIKKEP----EEVK--------RRIGYLPEEPSLYENL 88 (173)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEcccch----Hhhh--------ccEEEEecCCccccCC
Confidence 35689999999999999999999877765544 344443 22221110 1111 1233321110000
Q ss_pred CcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 92 SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 92 ~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+-...+. .+.|+..+..+......+.+++++||.- ..+|.+....+++.+......+..+|+.|.-.
T Consensus 89 tv~~~~~-LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~ 155 (173)
T cd03230 89 TVRENLK-LSGGMKQRLALAQALLHDPELLILDEPT-SGLDPESRREFWELLRELKKEGKTILLSSHIL 155 (173)
T ss_pred cHHHHhh-cCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 0001111 7888888888777788899999999998 78999887777666666544345667666543
No 163
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.17 E-value=8.5e-06 Score=82.38 Aligned_cols=145 Identities=18% Similarity=0.234 Sum_probs=88.3
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhH-HHHHHHHHHH---HHhC----CccCceeeee---
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARRVA---QELG----VRLGEEVGYA--- 84 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~-la~~~a~rva---~~~~----~~vg~~vg~~--- 84 (704)
.+.+|+++.|.||+||||||++..+.....+..|...+.-.+... ...++|++++ +... ..+.+.|.++
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p 103 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYP 103 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCc
Confidence 467899999999999999999998888776554444444443322 2234444432 2211 1222222111
Q ss_pred --eecccccCc------------------ccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHH
Q 005291 85 --IRFEDRTSE------------------RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (704)
Q Consensus 85 --~~~~~~~~~------------------~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~ 144 (704)
-.+...... ...+--.+.|...+.+......++..++++||.. ..+|......++..+.
T Consensus 104 ~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPT-s~LDi~~Q~evl~ll~ 182 (258)
T COG1120 104 HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPT-SHLDIAHQIEVLELLR 182 (258)
T ss_pred ccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCc-cccCHHHHHHHHHHHH
Confidence 111100000 1223446788888888888889999999999998 6788877666666665
Q ss_pred HHhc-cCcEEEEEecCCC
Q 005291 145 NLRA-SKLKILITSATLD 161 (704)
Q Consensus 145 ~~~~-~~~kiI~~SATl~ 161 (704)
+... .+..+|+...-+|
T Consensus 183 ~l~~~~~~tvv~vlHDlN 200 (258)
T COG1120 183 DLNREKGLTVVMVLHDLN 200 (258)
T ss_pred HHHHhcCCEEEEEecCHH
Confidence 5442 2566777766654
No 164
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.17 E-value=6.4e-06 Score=80.88 Aligned_cols=144 Identities=22% Similarity=0.299 Sum_probs=95.4
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhC-----------CccCceeeee
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG-----------VRLGEEVGYA 84 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~-----------~~vg~~vg~~ 84 (704)
.+.+|+++.|.||.||||||++..++....+..|...+.......+...-...+.+.+| ..+.+.|++-
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp 109 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFP 109 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhee
Confidence 45689999999999999999999999988877766666666655544433334444443 3344555554
Q ss_pred eecccccCcc----------------cceE-----EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCH---HHHHHHH
Q 005291 85 IRFEDRTSER----------------TLIK-----YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNT---DILLGLV 140 (704)
Q Consensus 85 ~~~~~~~~~~----------------~~I~-----~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~---d~l~~ll 140 (704)
.+.....++. ..+. =.+.||-.|..+......++.++++||.. ..+|. ..+..++
T Consensus 110 lre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPt-sGLDPI~a~~~~~LI 188 (263)
T COG1127 110 LREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPT-SGLDPISAGVIDELI 188 (263)
T ss_pred hHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCC-CCCCcchHHHHHHHH
Confidence 4433332211 0000 13567777777777777788999999998 56665 3466666
Q ss_pred HHHHHHhccCcEEEEEecCCCh
Q 005291 141 KRLVNLRASKLKILITSATLDG 162 (704)
Q Consensus 141 k~l~~~~~~~~kiI~~SATl~~ 162 (704)
+.+.... ++.+++.|+-++.
T Consensus 189 ~~L~~~l--g~T~i~VTHDl~s 208 (263)
T COG1127 189 RELNDAL--GLTVIMVTHDLDS 208 (263)
T ss_pred HHHHHhh--CCEEEEEECChHH
Confidence 6666654 6889999887753
No 165
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.17 E-value=1.4e-05 Score=77.03 Aligned_cols=129 Identities=24% Similarity=0.279 Sum_probs=79.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhHHHHHHHHHHHHHhCCccCceeeeeeeccccc--C
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRT--S 92 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~--~ 92 (704)
.+.+|+.+.|.||+||||||++..+........ +.+.+ -.+..... ...+.. .++|........ +
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~-G~i~~~g~~~~~~~---~~~~~~--------~i~~~~~~~~~~~~t 91 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTS-GEILIDGVDLRDLD---LESLRK--------NIAYVPQDPFLFSGT 91 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC-CEEEECCEEhhhcC---HHHHHh--------hEEEEcCCchhccch
Confidence 356899999999999999999998888766544 44443 22211100 011111 122211100000 0
Q ss_pred cccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 93 ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 93 ~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
-.-.+ .+.|+..+..+....+.+.+++++||.- ..+|......+.+.+..... +..+|+.|..+
T Consensus 92 ~~e~l--LS~G~~~rl~la~al~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~ 155 (171)
T cd03228 92 IRENI--LSGGQRQRIAIARALLRDPPILILDEAT-SALDPETEALILEALRALAK-GKTVIVIAHRL 155 (171)
T ss_pred HHHHh--hCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHhcC-CCEEEEEecCH
Confidence 00011 7788888887777788899999999998 78998887776666655543 55666666654
No 166
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.16 E-value=1.5e-05 Score=76.97 Aligned_cols=131 Identities=22% Similarity=0.256 Sum_probs=80.6
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc-chhhHHHHHHHHHHHHHhCCccCceeeeeeeccccc--C
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT-QPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRT--S 92 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~-~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~--~ 92 (704)
.+.+|+.+.|.||+||||||++..+........ +.|.+- .+..... ...+.. .++|........ +
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~-G~i~~~g~~~~~~~---~~~~~~--------~i~~~~q~~~~~~~t 91 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTLARLILGLLRPTS-GRVRLDGADISQWD---PNELGD--------HVGYLPQDDELFSGS 91 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHhccCCCC-CeEEECCEEcccCC---HHHHHh--------heEEECCCCccccCc
Confidence 356899999999999999999998887765543 444431 1211000 001111 122211000000 0
Q ss_pred cccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 93 ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 93 ~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
-.-.+ .+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|.-++
T Consensus 92 v~~~l--LS~G~~qrv~la~al~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 92 IAENI--LSGGQRQRLGLARALYGNPRILVLDEPN-SHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred HHHHC--cCHHHHHHHHHHHHHhcCCCEEEEECCc-cccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 00111 7889888888888888999999999998 789988777666666554433567777776553
No 167
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.15 E-value=1.5e-05 Score=77.46 Aligned_cols=131 Identities=19% Similarity=0.213 Sum_probs=82.0
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhHHHHHHHHHHHHHhCCccCceeeeeeec---cccc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF---EDRT 91 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~---~~~~ 91 (704)
.+.+|+.+.|.||+||||||++..+........ +.|.+ -.+.... ...+.. .++|.... ...+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~-G~i~~~g~~~~~~----~~~~~~--------~i~~~~q~~~~~~~t 90 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQ-GEITLDGVPVSDL----EKALSS--------LISVLNQRPYLFDTT 90 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC-CEEEECCEEHHHH----HHHHHh--------hEEEEccCCeeeccc
Confidence 356899999999999999999998887765543 44443 2221111 111111 12221110 0000
Q ss_pred CcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 92 SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 92 ~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
....-+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+++.+..... +..+|+.|.-++
T Consensus 91 v~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~ 158 (178)
T cd03247 91 LRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPT-VGLDPITERQLLSLIFEVLK-DKTLIWITHHLT 158 (178)
T ss_pred HHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH
Confidence 000014457788888888888888999999999998 78998877766666655543 666777776543
No 168
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.15 E-value=6.4e-06 Score=78.61 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=84.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcc----------------------hhhHHHHHHHHHHHHHh
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ----------------------PRRVAAVSVARRVAQEL 73 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~----------------------P~r~la~~~a~rva~~~ 73 (704)
.+++|+++.+.||+|+||||.+..+.....++.|...+.-. +-|..+.+.-..++...
T Consensus 24 ~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~ 103 (245)
T COG4555 24 EAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN 103 (245)
T ss_pred EeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh
Confidence 35689999999999999999999888777666555443322 22333444444444433
Q ss_pred CCccCceee----eeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc
Q 005291 74 GVRLGEEVG----YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (704)
Q Consensus 74 ~~~vg~~vg----~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~ 149 (704)
+..-++.-. ..-+++-..-.+.++-=.+.|+-.+.........+++++|+||+- ..+|--....+.+.+.+.+.+
T Consensus 104 ~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~-sGLDi~~~r~~~dfi~q~k~e 182 (245)
T COG4555 104 GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPT-SGLDIRTRRKFHDFIKQLKNE 182 (245)
T ss_pred hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCC-CCccHHHHHHHHHHHHHhhcC
Confidence 322110000 000000000012233335667777777777788899999999998 688877666655555555553
Q ss_pred CcEEEEEecCC
Q 005291 150 KLKILITSATL 160 (704)
Q Consensus 150 ~~kiI~~SATl 160 (704)
+.-+|+.|.-+
T Consensus 183 gr~viFSSH~m 193 (245)
T COG4555 183 GRAVIFSSHIM 193 (245)
T ss_pred CcEEEEecccH
Confidence 44555555554
No 169
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.14 E-value=1.3e-05 Score=74.98 Aligned_cols=106 Identities=24% Similarity=0.334 Sum_probs=74.1
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCccc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~ 95 (704)
.+..|+.+.|.||+||||||++..+....... .+.|.+-.. ..++|...
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~~~---------------------~~i~~~~~--------- 70 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPD-EGIVTWGST---------------------VKIGYFEQ--------- 70 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECCe---------------------EEEEEEcc---------
Confidence 35689999999999999999998887765544 344443210 13333221
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.|+..+..+....+.+.+++|+||+- ..+|.+....+.+.+... ...+++.|..+
T Consensus 71 ----lS~G~~~rv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~---~~til~~th~~ 127 (144)
T cd03221 71 ----LSGGEKMRLALAKLLLENPNLLLLDEPT-NHLDLESIEALEEALKEY---PGTVILVSHDR 127 (144)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHc---CCEEEEEECCH
Confidence 7888888888777788899999999998 788988766655554433 24566666554
No 170
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.14 E-value=9.4e-05 Score=89.26 Aligned_cols=131 Identities=18% Similarity=0.095 Sum_probs=80.8
Q ss_pred CEEEEEcCCCCcHH-HH--HHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCc-eeeeeeec--ccccCcc
Q 005291 21 PVVVVIGETGSGKS-TQ--LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE-EVGYAIRF--EDRTSER 94 (704)
Q Consensus 21 ~~vii~gpTGsGKT-t~--l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~-~vg~~~~~--~~~~~~~ 94 (704)
+.-+|.--|||||| |. +...+... .....|++++-|+.|-.|+...+........-. ... .... +......
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~-s~~~Lk~~l~~~~ 350 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAE-STSELKELLEDGK 350 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhccccc-CHHHHHHHHhcCC
Confidence 45788889999999 33 33444443 345689999999999999988875433221110 000 0000 0001124
Q ss_pred cceEEcchHHHHHHHHhC-C--CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 95 TLIKYLTDGVLLREILSN-P--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 95 ~~I~~~T~g~Ll~~l~~~-~--~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
..|+++|-+.+-...... + .-.+==+||+|||| |+-....... ++. ..+ +...+++|.|+
T Consensus 351 ~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G~~~~~-~~~---~~~-~a~~~gFTGTP 413 (962)
T COG0610 351 GKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYGELAKL-LKK---ALK-KAIFIGFTGTP 413 (962)
T ss_pred CcEEEEEecccchhhhcccccccCCCcEEEEEechh-hccccHHHHH-HHH---Hhc-cceEEEeeCCc
Confidence 589999988877666543 1 12223478999999 8877654333 333 333 68899999998
No 171
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.13 E-value=1.9e-05 Score=84.71 Aligned_cols=127 Identities=20% Similarity=0.269 Sum_probs=79.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCC-cEE-EE-cchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKS-GII-GV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSE 93 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~-~~i-lv-~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~ 93 (704)
+.++.+++++||||+||||.+..+........+ .+| ++ +-+.|..+.+..+.+++.+|..+.
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~--------------- 198 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH--------------- 198 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE---------------
Confidence 345789999999999999988877765432222 233 33 334577788888888887775421
Q ss_pred ccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHh
Q 005291 94 RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVS 166 (704)
Q Consensus 94 ~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~ 166 (704)
.+.+++-+...+. .+.+.++|+||++- ++...+.+...+..+.......-.++++|||...+.+.
T Consensus 199 ----~~~~~~~l~~~l~---~l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 199 ----AVKDGGDLQLALA---ELRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred ----ecCCcccHHHHHH---HhcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH
Confidence 1112222333332 24568999999998 45444455565666544333345789999998665543
No 172
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.13 E-value=3.1e-05 Score=82.44 Aligned_cols=123 Identities=18% Similarity=0.301 Sum_probs=73.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEE--EcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccce
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG--VTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~il--v~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I 97 (704)
..+++++||||+||||.+..+..... ..+.++. -+-|.|+.+.+..+..++..+..+ +
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~-~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv-------------------~ 300 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-------------------I 300 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH-HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE-------------------E
Confidence 36889999999999988877766543 2233333 344667777666666666554332 1
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCC-HHHHHHHHHHHHHHhccCcEEEEEecCCChHH
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLN-TDILLGLVKRLVNLRASKLKILITSATLDGEK 164 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~-~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~ 164 (704)
...++..+.+.+..-....++++|+||-+= |+.. ...+.. +..++....++-.++.+|||.....
T Consensus 301 v~~d~~~L~~aL~~lk~~~~~DvVLIDTaG-Rs~kd~~lm~E-L~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 301 AVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEE-MIETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred ecCCHHHHHHHHHHHHhccCCCEEEEeCcc-ccCcCHHHHHH-HHHHHhhcCCCeEEEEECCccChHH
Confidence 112455555544322222368999999997 4444 333444 4555443333566788999986544
No 173
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.10 E-value=1.1e-05 Score=78.34 Aligned_cols=129 Identities=22% Similarity=0.290 Sum_probs=80.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc-chhhH-HHHHHHHH------HHHHhCCccCceeeeeeecc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT-QPRRV-AAVSVARR------VAQELGVRLGEEVGYAIRFE 88 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~-~P~r~-la~~~a~r------va~~~~~~vg~~vg~~~~~~ 88 (704)
+.+|+.+.|.||+||||||++..+....... .+.|.+- .+... ........ +.+.++..
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~-~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~------------ 88 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLKPS-SGEILLDGKDLASLSPKELARKIAYVPQALELLGLA------------ 88 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCH------------
Confidence 5689999999999999999999887765544 3444432 12100 00011111 12222221
Q ss_pred cccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCC
Q 005291 89 DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (704)
Q Consensus 89 ~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~ 161 (704)
.. ....+.-.+.|+..+..+....+.+.+++|+||+- ..+|.+....+.+.+...... +..+|+.|..++
T Consensus 89 ~~--~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~-~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 89 HL--ADRPFNELSGGERQRVLLARALAQEPPILLLDEPT-SHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred hH--hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 00 01234447888888888777788899999999998 788988766665555544332 456777766543
No 174
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.09 E-value=2.2e-05 Score=74.53 Aligned_cols=118 Identities=25% Similarity=0.292 Sum_probs=75.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcc-hhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCccc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ-PRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~-P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~ 95 (704)
+.+|+.+.|.|++|+||||++..+....... .+.+.+-. +.... ...++. ..++|...
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~-~G~i~~~~~~~~~~---~~~~~~--------~~i~~~~q--------- 80 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPT-SGEILIDGKDIAKL---PLEELR--------RRIGYVPQ--------- 80 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCEEcccC---CHHHHH--------hceEEEee---------
Confidence 5688999999999999999998887765543 34443321 11000 000110 11232211
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.|+..+..+......+.+++|+||+. ..+|......+.+.+......+..+++.|..+
T Consensus 81 ----lS~G~~~r~~l~~~l~~~~~i~ilDEp~-~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 140 (157)
T cd00267 81 ----LSGGQRQRVALARALLLNPDLLLLDEPT-SGLDPASRERLLELLRELAEEGRTVIIVTHDP 140 (157)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 6778777777666677789999999998 78998877776666655443245666666654
No 175
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.09 E-value=9.2e-06 Score=78.60 Aligned_cols=142 Identities=21% Similarity=0.292 Sum_probs=87.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchh--hHHHHHHHHH---HHHHhCCccCceeeeeeec--
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPR--RVAAVSVARR---VAQELGVRLGEEVGYAIRF-- 87 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~--r~la~~~a~r---va~~~~~~vg~~vg~~~~~-- 87 (704)
.+.+|++++|+||.||||||++..+......+.| .|.+ -... +.-...+-++ +.+.++.....++..++..
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G-~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSG-SITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCc-eEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 5678999999999999999999988776655544 3433 2111 1111111111 1122222211111111000
Q ss_pred ------------------------ccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHH
Q 005291 88 ------------------------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (704)
Q Consensus 88 ------------------------~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l 143 (704)
.++. +.-=-=.+.|.-.|........-++.++.+||+. ..+|......++.-+
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka--~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPT-SALDPElv~EVL~vm 179 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKA--DAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPT-SALDPELVGEVLDVM 179 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhh--hhCccccCcHHHHHHHHHHHHcCCCCEEeecCCc-ccCCHHHHHHHHHHH
Confidence 0000 0000114677778888888888899999999998 789999988888887
Q ss_pred HHHhccCcEEEEEecCCC
Q 005291 144 VNLRASKLKILITSATLD 161 (704)
Q Consensus 144 ~~~~~~~~kiI~~SATl~ 161 (704)
......+...|+.|.-+.
T Consensus 180 ~~LA~eGmTMivVTHEM~ 197 (240)
T COG1126 180 KDLAEEGMTMIIVTHEMG 197 (240)
T ss_pred HHHHHcCCeEEEEechhH
Confidence 777776888999988775
No 176
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.06 E-value=1e-05 Score=79.74 Aligned_cols=121 Identities=22% Similarity=0.302 Sum_probs=69.7
Q ss_pred hHHHHHHHHHhcc--CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeee
Q 005291 7 LQYEETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (704)
Q Consensus 7 ~~~~~~il~~l~~--~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~ 84 (704)
.+-|.+++..+.. +++++|.|+.|+||||.+..+...... .+.+|+++.|+..++..+.+.. +... .
T Consensus 3 ~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~-~g~~v~~~apT~~Aa~~L~~~~----~~~a-~----- 71 (196)
T PF13604_consen 3 NEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEA-AGKRVIGLAPTNKAAKELREKT----GIEA-Q----- 71 (196)
T ss_dssp -HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHH-TT--EEEEESSHHHHHHHHHHH----TS-E-E-----
T ss_pred CHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHh-CCCeEEEECCcHHHHHHHHHhh----Ccch-h-----
Confidence 4567778887743 358999999999999887665443322 3578999999998887766653 2111 0
Q ss_pred eecccccCcccceEEcchHHHHHHHHh-----CCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecC
Q 005291 85 IRFEDRTSERTLIKYLTDGVLLREILS-----NPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (704)
Q Consensus 85 ~~~~~~~~~~~~I~~~T~g~Ll~~l~~-----~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SAT 159 (704)
|-..++..... .+.+...++|||||+- +++...+..+++.+.. .+.++|++.=+
T Consensus 72 ----------------Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEas--mv~~~~~~~ll~~~~~---~~~klilvGD~ 130 (196)
T PF13604_consen 72 ----------------TIHSFLYRIPNGDDEGRPELPKKDVLIVDEAS--MVDSRQLARLLRLAKK---SGAKLILVGDP 130 (196)
T ss_dssp ----------------EHHHHTTEECCEECCSSCC-TSTSEEEESSGG--G-BHHHHHHHHHHS-T----T-EEEEEE-T
T ss_pred ----------------hHHHHHhcCCcccccccccCCcccEEEEeccc--ccCHHHHHHHHHHHHh---cCCEEEEECCc
Confidence 10000000000 0015567899999997 6777666665544432 26788887643
No 177
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.04 E-value=5.7e-06 Score=81.50 Aligned_cols=130 Identities=22% Similarity=0.272 Sum_probs=80.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc--CCCCCcEEEE-cchhhHHHHHHHHHHHHHhCCccCceeeeeeecc----
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH--GYTKSGIIGV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFE---- 88 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~--~~~~~~~ilv-~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~---- 88 (704)
.+.+|+.+.|.||+||||||++..+.... ... .+.|.+ -++... .. +. ..++|.....
T Consensus 31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~-~G~i~~~g~~~~~--~~----~~--------~~i~~~~q~~~~~~ 95 (194)
T cd03213 31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV-SGEVLINGRPLDK--RS----FR--------KIIGYVPQDDILHP 95 (194)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-ceEEEECCEeCch--Hh----hh--------heEEEccCcccCCC
Confidence 45789999999999999999999888766 444 344433 222111 01 10 1122111000
Q ss_pred cccC-cc----cceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 89 DRTS-ER----TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 89 ~~~~-~~----~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
..+. .. ..+.-.+.|+..+..+....+.+.+++++||.- ..+|.+....+.+.+......+..+|+.|.-++
T Consensus 96 ~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 96 TLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPT-SGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred CCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 0000 00 011146788888877777788899999999998 789998877766666554433567777776653
No 178
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.03 E-value=5.5e-06 Score=82.19 Aligned_cols=150 Identities=20% Similarity=0.245 Sum_probs=80.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCC--CCCcEEEE-cchhhHHHHHHHHHH---HHHhCCccCceeeeeeecccc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGY--TKSGIIGV-TQPRRVAAVSVARRV---AQELGVRLGEEVGYAIRFEDR 90 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~--~~~~~ilv-~~P~r~la~~~a~rv---a~~~~~~vg~~vg~~~~~~~~ 90 (704)
+.+|+.+.|+||+||||||++..+...... ...+.|.+ -.+.........+.+ .+......+..+...+.+...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 109 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALR 109 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhh
Confidence 578999999999999999999988777651 22344433 222211100000000 000000000000000000000
Q ss_pred cCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCChHHHhcc
Q 005291 91 TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKF 168 (704)
Q Consensus 91 ~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~~~~~~~~ 168 (704)
...+..+.-.+.|+..+..+....+.+..++++||.- ..+|......+.+.+...... +..+|++ .+-+.+.+.++
T Consensus 110 ~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~~t~ii~-~~h~~~~~~~~ 186 (202)
T cd03233 110 CKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNST-RGLDSSTALEILKCIRTMADVLKTTTFVS-LYQASDEIYDL 186 (202)
T ss_pred hccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhCCCEEEEE-EcCCHHHHHHh
Confidence 0022344456888888888777788899999999998 788988777666666554432 2334443 34333334443
No 179
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.02 E-value=4.6e-05 Score=73.52 Aligned_cols=127 Identities=22% Similarity=0.255 Sum_probs=75.6
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchh-----hHHHHHHHHHHHHHhCCccCceeeeeeecccc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-----RVAAVSVARRVAQELGVRLGEEVGYAIRFEDR 90 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~-----r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~ 90 (704)
.+..|+.+.|.||+||||||++..++.. .+...+..... +...... ..+.+.++... .
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~~----~G~v~~~~~~~~~~~~~~~~~~q-~~~l~~~~L~~------------~ 79 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLYA----SGKARLISFLPKFSRNKLIFIDQ-LQFLIDVGLGY------------L 79 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhc----CCcEEECCcccccccccEEEEhH-HHHHHHcCCCc------------c
Confidence 4678999999999999999999876531 12111110100 0000000 11222222110 0
Q ss_pred cCcccceEEcchHHHHHHHHhCCCCCC--CceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 91 TSERTLIKYLTDGVLLREILSNPDLSP--YSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 91 ~~~~~~I~~~T~g~Ll~~l~~~~~l~~--~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.....+.-.+.|+..+..+....+.+ .+++++||+- ..+|......+...+......+..+|+.|..++
T Consensus 80 -~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt-~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~ 150 (176)
T cd03238 80 -TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPS-TGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred -ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 01123334677888777777777888 9999999997 788988777666655554433677888777654
No 180
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.02 E-value=6.1e-06 Score=83.13 Aligned_cols=150 Identities=23% Similarity=0.234 Sum_probs=82.6
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhh--HHHHHHHHHHH--------HHhCCccCceeeee
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRR--VAAVSVARRVA--------QELGVRLGEEVGYA 84 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r--~la~~~a~rva--------~~~~~~vg~~vg~~ 84 (704)
.+..|+.++|.|+|||||||++..+........ +.|.+ -.|+. ....++.+++. +.++..+...+.+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~-G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg 104 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS-GEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG 104 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCcCcCCC-CEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhc
Confidence 456799999999999999999988877665544 34433 33332 11222222110 01111111111111
Q ss_pred eeccccc-------------------CcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHH
Q 005291 85 IRFEDRT-------------------SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (704)
Q Consensus 85 ~~~~~~~-------------------~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~ 145 (704)
....... ..+...--.+.|...|..+......++.++|+||+- .++|......+++.+.+
T Consensus 105 ~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPt-a~LD~~~~~~l~~~l~~ 183 (235)
T COG1122 105 LENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPT-AGLDPKGRRELLELLKK 183 (235)
T ss_pred hhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCC-CCCCHHHHHHHHHHHHH
Confidence 0000000 011233345556555655555567789999999998 78999887777777766
Q ss_pred Hhcc-CcEEEEEecCCChHHHhccc
Q 005291 146 LRAS-KLKILITSATLDGEKVSKFF 169 (704)
Q Consensus 146 ~~~~-~~kiI~~SATl~~~~~~~~~ 169 (704)
.... +..+|+.|+ +.+.+..|.
T Consensus 184 L~~~~~~tii~~tH--d~~~~~~~a 206 (235)
T COG1122 184 LKEEGGKTIIIVTH--DLELVLEYA 206 (235)
T ss_pred HHhcCCCeEEEEeC--cHHHHHhhC
Confidence 6542 245666555 444455544
No 181
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.01 E-value=7.9e-06 Score=79.61 Aligned_cols=133 Identities=18% Similarity=0.213 Sum_probs=80.4
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc-chhhHHHHHHHHHHHHHhCCccCceeeeeeec------c
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT-QPRRVAAVSVARRVAQELGVRLGEEVGYAIRF------E 88 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~-~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~------~ 88 (704)
.+..|+.+.|.||+||||||++..+........ +.|.+- .+...... ..... ..++|.... .
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~--~~~~~--------~~i~~~~q~~~~~~~~ 90 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPAS-GEITLDGKPVTRRSP--RDAIR--------AGIAYVPEDRKREGLV 90 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEECCEECCccCH--HHHHh--------CCeEEecCCcccCccc
Confidence 356899999999999999999998887765544 444332 22111000 00010 112222110 0
Q ss_pred cccCcccceEE---cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 89 DRTSERTLIKY---LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 89 ~~~~~~~~I~~---~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
...+-.-.+.+ .+.|+..+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.|..+
T Consensus 91 ~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 164 (182)
T cd03215 91 LDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPT-RGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164 (182)
T ss_pred CCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 00010011111 7888888888877788999999999998 78998877776666655443356677766654
No 182
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.00 E-value=2.1e-05 Score=82.46 Aligned_cols=142 Identities=20% Similarity=0.251 Sum_probs=88.0
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc-chh---------------------hHHHHHHHHHHHHHh
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT-QPR---------------------RVAAVSVARRVAQEL 73 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~-~P~---------------------r~la~~~a~rva~~~ 73 (704)
.+.+|+++.+.||+||||||++..++.......|..-+.- .+. ...+.+..+.++...
T Consensus 27 ~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~ 106 (293)
T COG1131 27 EVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY 106 (293)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHh
Confidence 3568999999999999999999988887765433322221 111 112233333344444
Q ss_pred CCcc--Cc-eee---eeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh
Q 005291 74 GVRL--GE-EVG---YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (704)
Q Consensus 74 ~~~v--g~-~vg---~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~ 147 (704)
+... .. .+- ..+.... ..+..+.-.+.|+-.|..+....+.+++++|+||.- ..+|......+.+.+....
T Consensus 107 ~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt-~GLDp~~~~~~~~~l~~l~ 183 (293)
T COG1131 107 GLSKEEAEERIEELLELFGLED--KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPT-SGLDPESRREIWELLRELA 183 (293)
T ss_pred CCChhHHHHHHHHHHHHcCCch--hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC-cCCCHHHHHHHHHHHHHHH
Confidence 3220 00 000 0011111 013445567889998888888889999999999998 7999988888777776666
Q ss_pred ccC-cEEEEEecCC
Q 005291 148 ASK-LKILITSATL 160 (704)
Q Consensus 148 ~~~-~kiI~~SATl 160 (704)
..+ ..|++.|+-+
T Consensus 184 ~~g~~tvlissH~l 197 (293)
T COG1131 184 KEGGVTILLSTHIL 197 (293)
T ss_pred hCCCcEEEEeCCcH
Confidence 533 4555555554
No 183
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.00 E-value=1e-05 Score=79.78 Aligned_cols=143 Identities=17% Similarity=0.061 Sum_probs=76.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhHHH----------------HHHHHHHHHHhCCc-cC
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAA----------------VSVARRVAQELGVR-LG 78 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~la----------------~~~a~rva~~~~~~-vg 78 (704)
+..|+.+.|+|++||||||++..++.......|. |.+ -.+..... ..+.+.+....... ..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~ 101 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGN-IYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSA 101 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcccH
Confidence 5689999999999999999999888876554433 322 11110000 00011110000000 00
Q ss_pred ceeeeeeecccc-cCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEe
Q 005291 79 EEVGYAIRFEDR-TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (704)
Q Consensus 79 ~~vg~~~~~~~~-~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~S 157 (704)
..+......-.. ...+..+.-.+.|+..+..+....+.+.+++++||+. ..+|......+.+.+......+..+|+.|
T Consensus 102 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~s 180 (195)
T PRK13541 102 ETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVE-TNLSKENRDLLNNLIVMKANSGGIVLLSS 180 (195)
T ss_pred HHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 000000000000 0011233346777777777777778899999999998 78998876665555543333356677777
Q ss_pred cCCC
Q 005291 158 ATLD 161 (704)
Q Consensus 158 ATl~ 161 (704)
.-++
T Consensus 181 h~~~ 184 (195)
T PRK13541 181 HLES 184 (195)
T ss_pred CCcc
Confidence 6543
No 184
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.99 E-value=2.5e-06 Score=97.97 Aligned_cols=232 Identities=16% Similarity=0.148 Sum_probs=138.2
Q ss_pred CCCCchHHHHHHHHHhccC----------------CEEEEEcCCCCcHHHHHHHHHH-hcCCCCCcEEEEcchhhHHHHH
Q 005291 2 ANLPILQYEETIVETVEQN----------------PVVVVIGETGSGKSTQLSQILH-RHGYTKSGIIGVTQPRRVAAVS 64 (704)
Q Consensus 2 ~~LPi~~~~~~il~~l~~~----------------~~vii~gpTGsGKTt~l~~~l~-~~~~~~~~~ilv~~P~r~la~~ 64 (704)
..||+...+....+.+.++ .+.++-+|||+|||..+...+. .....++.+++++.|...++.+
T Consensus 909 ~plp~~~L~~~~~e~~~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvke 988 (1230)
T KOG0952|consen 909 RPLPSSALKNVVFEALYKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKE 988 (1230)
T ss_pred CCCcchhhccccHHHhhcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcc
Confidence 3567766666666655432 3457789999999944433333 3333456799999999999988
Q ss_pred HHHHHHHHhCCccCceeee---eeecccccCcccceEEcchHHHHHHH---HhCCCCCCCceEEEeCCCcCCCCHHHHHH
Q 005291 65 VARRVAQELGVRLGEEVGY---AIRFEDRTSERTLIKYLTDGVLLREI---LSNPDLSPYSVIILDEAHERSLNTDILLG 138 (704)
Q Consensus 65 ~a~rva~~~~~~vg~~vg~---~~~~~~~~~~~~~I~~~T~g~Ll~~l---~~~~~l~~~~~IIiDEaHer~l~~d~l~~ 138 (704)
.+.+........ |..++. .+.-+-..-..+.++++|++...... .....+++++.+|+||.|..+-+-...+.
T Consensus 989 r~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle 1067 (1230)
T KOG0952|consen 989 RSDDWSKRDELP-GIKVIELTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLE 1067 (1230)
T ss_pred cccchhhhcccC-CceeEeccCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEE
Confidence 888776655444 333331 11112122346789999998765443 44457889999999999954433222222
Q ss_pred HHHHHHH----HhccCcEEEEEec-CCChHHHhcccCCCCcccc--CCCcCceeEEecCCCCcchHHH---HHHHHHH-H
Q 005291 139 LVKRLVN----LRASKLKILITSA-TLDGEKVSKFFSNCPTLNV--PGKLYPVEILHSKERPTSYLES---ALKTAID-I 207 (704)
Q Consensus 139 llk~l~~----~~~~~~kiI~~SA-Tl~~~~~~~~~~~~~~i~i--~~~~~pv~~~~~~~~~~~~~~~---~~~~~~~-i 207 (704)
++..-.+ ..++..+++++|- -.+...+++|++-.+.... .-+..|.+.++...+..-|... ..+..++ +
T Consensus 1068 ~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qai 1147 (1230)
T KOG0952|consen 1068 VIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAI 1147 (1230)
T ss_pred EEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHH
Confidence 2111111 1223567777764 3477889999986666444 3466777777766555333221 1122222 2
Q ss_pred HccCCCCCEEEEeCCHHHHHHHHHHHH
Q 005291 208 HVREPEGDVLIFMTGQDDIEKLVSKLE 234 (704)
Q Consensus 208 ~~~~~~g~iLVFl~~~~~i~~~~~~L~ 234 (704)
....+..++|||+.+++...-.+.-|.
T Consensus 1148 k~~sp~~p~lifv~srrqtrlta~~li 1174 (1230)
T KOG0952|consen 1148 KTHSPIKPVLIFVSSRRQTRLTALDLI 1174 (1230)
T ss_pred hcCCCCCceEEEeecccccccchHhHH
Confidence 233556799999998876554444443
No 185
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.99 E-value=9.4e-05 Score=81.42 Aligned_cols=126 Identities=24% Similarity=0.323 Sum_probs=76.4
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcC-CCCCcEEE-E-cchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCccc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHG-YTKSGIIG-V-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~-~~~~~~il-v-~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~ 95 (704)
.+++++++||||+||||.+..+..... ...+.+|. + +-|.|..+.+.....++.+++.+. +
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~-------------- 283 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--V-------------- 283 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--c--------------
Confidence 467999999999999988777765543 22233333 3 456677777777777766664321 0
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHH-HhccCcEEEEEecCCChHHHhc
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN-LRASKLKILITSATLDGEKVSK 167 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~-~~~~~~kiI~~SATl~~~~~~~ 167 (704)
..++.-+...+. .+.++++||||.+-....+... ...+..++. ...+.-.++++|||.....+.+
T Consensus 284 ---~~~~~~l~~~l~---~~~~~DlVlIDt~G~~~~d~~~-~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~ 349 (424)
T PRK05703 284 ---VYDPKELAKALE---QLRDCDVILIDTAGRSQRDKRL-IEELKALIEFSGEPIDVYLVLSATTKYEDLKD 349 (424)
T ss_pred ---cCCHHhHHHHHH---HhCCCCEEEEeCCCCCCCCHHH-HHHHHHHHhccCCCCeEEEEEECCCCHHHHHH
Confidence 123333434333 2346899999999733334333 333455554 2222456888999997666544
No 186
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.97 E-value=1.5e-05 Score=91.19 Aligned_cols=142 Identities=18% Similarity=0.238 Sum_probs=85.3
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHH---HH---hCCccCceeeeee---e
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVA---QE---LGVRLGEEVGYAI---R 86 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva---~~---~~~~vg~~vg~~~---~ 86 (704)
.+.+|+.+.|+||+||||||++..++.......|...+--+|.+....+..+.++ ++ +...+.+.+.+.. .
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~ 436 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDAT 436 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCC
Confidence 3568999999999999999999988877665544433334444333111111111 00 0000000000000 0
Q ss_pred cc------------c---ccCc--ccce----EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHH
Q 005291 87 FE------------D---RTSE--RTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (704)
Q Consensus 87 ~~------------~---~~~~--~~~I----~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~ 145 (704)
.+ + ..+. +|.| .-.+.|...|..+....+++.+++|+||+- ..+|.+.-..+.+.+..
T Consensus 437 ~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~T-SaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 437 DEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPT-EHLDAGTESELLEDLLA 515 (529)
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHH
Confidence 00 0 0000 1111 125788888888888899999999999998 78999888887777776
Q ss_pred HhccCcEEEEEecC
Q 005291 146 LRASKLKILITSAT 159 (704)
Q Consensus 146 ~~~~~~kiI~~SAT 159 (704)
..+ +..+|+.|+-
T Consensus 516 ~~~-~~TvIiItHr 528 (529)
T TIGR02868 516 ALS-GKTVVVITHH 528 (529)
T ss_pred hcC-CCEEEEEecC
Confidence 654 7777777753
No 187
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.96 E-value=0.00016 Score=66.71 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=32.9
Q ss_pred HHHHHHHHhcc--CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcch
Q 005291 9 YEETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (704)
Q Consensus 9 ~~~~il~~l~~--~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P 57 (704)
...++...+.. +..++|.||+|+|||+++..+...... .+..++++..
T Consensus 6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~ 55 (151)
T cd00009 6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR-PGAPFLYLNA 55 (151)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc-CCCCeEEEeh
Confidence 34556666665 789999999999999988877766542 2334444433
No 188
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.96 E-value=2.1e-05 Score=77.90 Aligned_cols=144 Identities=18% Similarity=0.135 Sum_probs=80.9
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhHHHHHHHHHH---HHHhCCccCceeeeeeec----
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAVSVARRV---AQELGVRLGEEVGYAIRF---- 87 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~la~~~a~rv---a~~~~~~vg~~vg~~~~~---- 87 (704)
.+.+|+.+.|.||+||||||++..+........| .|.+ -.+.........+++ .+.........+...+.+
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~ 101 (200)
T PRK13540 23 HLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKG-EILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF 101 (200)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-eEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc
Confidence 3568999999999999999999988776655433 3333 222110000111110 000000000000000000
Q ss_pred -------c------cc-cCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEE
Q 005291 88 -------E------DR-TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (704)
Q Consensus 88 -------~------~~-~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~ki 153 (704)
. .. ...+..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......+..+
T Consensus 102 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~-~~LD~~~~~~l~~~l~~~~~~~~ti 180 (200)
T PRK13540 102 SPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPL-VALDELSLLTIITKIQEHRAKGGAV 180 (200)
T ss_pred CcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC-cccCHHHHHHHHHHHHHHHHcCCEE
Confidence 0 00 0011233346778887777777788899999999998 7888887776666665543335677
Q ss_pred EEEecCCC
Q 005291 154 LITSATLD 161 (704)
Q Consensus 154 I~~SATl~ 161 (704)
|+.|....
T Consensus 181 ii~sh~~~ 188 (200)
T PRK13540 181 LLTSHQDL 188 (200)
T ss_pred EEEeCCch
Confidence 77777653
No 189
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.95 E-value=1.3e-05 Score=78.92 Aligned_cols=130 Identities=22% Similarity=0.282 Sum_probs=78.4
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcC-CCCCcEEEE-cchhhHHHHHHHHHHHHHhCCccCceeeeeeecccc---
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHG-YTKSGIIGV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDR--- 90 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~-~~~~~~ilv-~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~--- 90 (704)
.+..|+.+.|+||+||||||++..+..... ....+.+.+ -.+.. ..+.. .++|.......
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-------~~~~~--------~i~~~~q~~~~~~~ 93 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-------KNFQR--------STGYVEQQDVHSPN 93 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-------HHhhh--------ceEEecccCccccC
Confidence 456899999999999999999988876432 122344443 22211 11111 11111100000
Q ss_pred cCcccce------EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 91 TSERTLI------KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 91 ~~~~~~I------~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+-...+ .-.+.|+..+..+....+.+.+++++||+- ..+|.+....+.+.+......+..+|+.|.-++
T Consensus 94 ~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 94 LTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPT-SGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred CcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCC-cCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 0000000 035777777777777788899999999998 789998877766666654433567777777654
No 190
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.95 E-value=3.2e-05 Score=76.35 Aligned_cols=66 Identities=21% Similarity=0.313 Sum_probs=49.2
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHH---HHHHHHhccCcEEEEEecCCChHHHhcccCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLV---KRLVNLRASKLKILITSATLDGEKVSKFFSN 171 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~ll---k~l~~~~~~~~kiI~~SATl~~~~~~~~~~~ 171 (704)
.+.|.+.|.........+.+++|+||+- ..+|......++ ..+.+.+ ++.+|+.|.-+. +..++.+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEpt-SaLD~siQa~IlnlL~~l~~~~--~lt~l~IsHdl~---~v~~~cd 210 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPT-SALDVSVQAQILNLLLELKKER--GLTYLFISHDLA---LVEHMCD 210 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCch-hhhcHHHHHHHHHHHHHHHHhc--CceEEEEeCcHH---HHHHHhh
Confidence 5788899998888888999999999998 788887644444 4444443 688999998765 4455543
No 191
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.93 E-value=3.3e-05 Score=77.86 Aligned_cols=140 Identities=24% Similarity=0.290 Sum_probs=85.8
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHH-HHHHHHHHHHHhCCccCceeeeeeecccccCcc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRVAQELGVRLGEEVGYAIRFEDRTSER 94 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~l-a~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~ 94 (704)
.+.+|+++.++|++||||||+...++.....+.|....=-.+...+ .....+++.+.+. .+|..--+..++...
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~-~Vgl~~~~~~ryPhe---- 109 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLE-KVGLPEEFLYRYPHE---- 109 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHH-HhCCCHHHhhcCCcc----
Confidence 4678999999999999999999988887765544333322321111 1112222322221 111000011122111
Q ss_pred cceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHH---HHHHHHHHHHHhccCcEEEEEecCCChHHHhcccCC
Q 005291 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI---LLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSN 171 (704)
Q Consensus 95 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~---l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~~~~ 171 (704)
.+.|...|........-+.+++|.||.- .++|... .+.+++.+.... ++..+++|.-+. +.+++.+
T Consensus 110 -----lSGGQrQRi~IARALal~P~liV~DEpv-SaLDvSiqaqIlnLL~dlq~~~--~lt~lFIsHDL~---vv~~isd 178 (268)
T COG4608 110 -----LSGGQRQRIGIARALALNPKLIVADEPV-SALDVSVQAQILNLLKDLQEEL--GLTYLFISHDLS---VVRYISD 178 (268)
T ss_pred -----cCchhhhhHHHHHHHhhCCcEEEecCch-hhcchhHHHHHHHHHHHHHHHh--CCeEEEEEEEHH---hhhhhcc
Confidence 3567788888777788889999999998 6788854 555566665554 788999998775 4455544
No 192
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.93 E-value=5.1e-05 Score=72.73 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=75.0
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeeccc--ccCc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED--RTSE 93 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~--~~~~ 93 (704)
.+.+|+.+.|.||+||||||++..+........ +.|.+-.. ..++|-..... ..+-
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~~~---------------------~~i~~~~q~~~~~~~tv 80 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLWPWGS-GRIGMPEG---------------------EDLLFLPQRPYLPLGTL 80 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-ceEEECCC---------------------ceEEEECCCCccccccH
Confidence 356899999999999999999998887765543 33333110 11111100000 0000
Q ss_pred cc-----ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 94 RT-----LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 94 ~~-----~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.. ...-.+.|+..+..+....+.+.+++|+||.- ..+|.+....+.+.+... ...+|+.|.-+
T Consensus 81 ~~nl~~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~---~~tiiivsh~~ 148 (166)
T cd03223 81 REQLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT-SALDEESEDRLYQLLKEL---GITVISVGHRP 148 (166)
T ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc-cccCHHHHHHHHHHHHHh---CCEEEEEeCCh
Confidence 00 12336788888887777788899999999998 788888766655544433 35677777664
No 193
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.93 E-value=1.3e-05 Score=84.65 Aligned_cols=144 Identities=18% Similarity=0.193 Sum_probs=82.3
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhHHHHHHHHHH---HHHhCCccCceee----e----
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAVSVARRV---AQELGVRLGEEVG----Y---- 83 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~la~~~a~rv---a~~~~~~vg~~vg----~---- 83 (704)
.+..|+++.|+||+||||||++..++.......| .|.+ -.+.........+++ .+........++. +
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 93 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG-TARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRL 93 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHH
Confidence 4578999999999999999999988876655433 3332 111100000011111 0000000000000 0
Q ss_pred -eee--------------cccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc
Q 005291 84 -AIR--------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (704)
Q Consensus 84 -~~~--------------~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~ 148 (704)
... +.-....+..+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+.....
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~~~~ 172 (302)
T TIGR01188 94 YGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPT-TGLDPRTRRAIWDYIRALKE 172 (302)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHh
Confidence 000 00000012344457888888888777788999999999998 78999877776666655543
Q ss_pred cCcEEEEEecCCC
Q 005291 149 SKLKILITSATLD 161 (704)
Q Consensus 149 ~~~kiI~~SATl~ 161 (704)
.+..+|+.|.-++
T Consensus 173 ~g~tvi~~sH~~~ 185 (302)
T TIGR01188 173 EGVTILLTTHYME 185 (302)
T ss_pred CCCEEEEECCCHH
Confidence 3567777777653
No 194
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.93 E-value=2e-05 Score=78.26 Aligned_cols=141 Identities=18% Similarity=0.158 Sum_probs=79.6
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc-chhhHHHH-------------------HHHHHHHH---H
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT-QPRRVAAV-------------------SVARRVAQ---E 72 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~-~P~r~la~-------------------~~a~rva~---~ 72 (704)
.+.+|+.+.|.||+||||||++..++....... +.|.+- .+...... .+.+.+.- .
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~-G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~ 101 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLARPDA-GEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRL 101 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-cEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHh
Confidence 467899999999999999999998887665443 333321 12110000 01111100 0
Q ss_pred hCCccCceee---eeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc
Q 005291 73 LGVRLGEEVG---YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (704)
Q Consensus 73 ~~~~vg~~vg---~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~ 149 (704)
.+......+. .....+. ..+..+.-.+.|+..+..+....+.+.+++|+||+. ..+|......+.+.+......
T Consensus 102 ~~~~~~~~~~~~l~~~gl~~--~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~ 178 (204)
T PRK13538 102 HGPGDDEALWEALAQVGLAG--FEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPF-TAIDKQGVARLEALLAQHAEQ 178 (204)
T ss_pred cCccHHHHHHHHHHHcCCHH--HhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHC
Confidence 0000000000 0000000 012234446778777777777788999999999998 789988777766655554333
Q ss_pred CcEEEEEecCC
Q 005291 150 KLKILITSATL 160 (704)
Q Consensus 150 ~~kiI~~SATl 160 (704)
+..+|+.|.-+
T Consensus 179 ~~tiii~sh~~ 189 (204)
T PRK13538 179 GGMVILTTHQD 189 (204)
T ss_pred CCEEEEEecCh
Confidence 56777777654
No 195
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.92 E-value=4.4e-05 Score=75.46 Aligned_cols=144 Identities=19% Similarity=0.264 Sum_probs=86.3
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhH-HH-HHHHHHH---HHHhC------CccCcee--e
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AA-VSVARRV---AQELG------VRLGEEV--G 82 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~-la-~~~a~rv---a~~~~------~~vg~~v--g 82 (704)
+++.|+..+|.||+||||||++..+..++....+...++..++.. -. .++-+++ +.++. ..+-+.| |
T Consensus 53 ~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg 132 (257)
T COG1119 53 QVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSG 132 (257)
T ss_pred eecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeec
Confidence 467899999999999999999999988887765544444444321 11 2222221 11111 1111111 1
Q ss_pred e-------eeecccc---------------cCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHH
Q 005291 83 Y-------AIRFEDR---------------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLV 140 (704)
Q Consensus 83 ~-------~~~~~~~---------------~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~ll 140 (704)
+ ..+.+.. ...+...-..+.|...+.+.......++.++|+||+- -++|......++
T Consensus 133 ~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~-~GLDl~~re~ll 211 (257)
T COG1119 133 FFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPA-QGLDLIAREQLL 211 (257)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcc-ccCChHHHHHHH
Confidence 1 1010000 0012233346777777888888888999999999997 688887766666
Q ss_pred HHHHHHhc--cCcEEEEEecCC
Q 005291 141 KRLVNLRA--SKLKILITSATL 160 (704)
Q Consensus 141 k~l~~~~~--~~~kiI~~SATl 160 (704)
+.+..... ....+|+.|.-.
T Consensus 212 ~~l~~~~~~~~~~~ll~VtHh~ 233 (257)
T COG1119 212 NRLEELAASPGAPALLFVTHHA 233 (257)
T ss_pred HHHHHHhcCCCCceEEEEEcch
Confidence 66655443 267888887754
No 196
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.92 E-value=0.00014 Score=72.53 Aligned_cols=137 Identities=28% Similarity=0.337 Sum_probs=79.1
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE--------------EEEcc-----hhhHHHHHHHH---------
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI--------------IGVTQ-----PRRVAAVSVAR--------- 67 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~--------------ilv~~-----P~r~la~~~a~--------- 67 (704)
.+.+|+++.|+||+||||||++..+........|.. .++.| |.+.....++-
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~ 104 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSK 104 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccch
Confidence 467899999999999999999998887765544321 12222 22221111100
Q ss_pred ----HHHHHhCCccCceeeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHH
Q 005291 68 ----RVAQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (704)
Q Consensus 68 ----rva~~~~~~vg~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l 143 (704)
..+.+. -..||-. .+++.-. .=.+.||-.|..+......+..++.+||.- -.+|.-....+-..+
T Consensus 105 ~e~~~~a~~~----L~~VgL~-~~~~~~P-----~qLSGGMrQRVaiARAL~~~P~lLLlDEPF-gALDalTR~~lq~~l 173 (248)
T COG1116 105 AEARERAKEL----LELVGLA-GFEDKYP-----HQLSGGMRQRVAIARALATRPKLLLLDEPF-GALDALTREELQDEL 173 (248)
T ss_pred HhHHHHHHHH----HHHcCCc-chhhcCc-----cccChHHHHHHHHHHHHhcCCCEEEEcCCc-chhhHHHHHHHHHHH
Confidence 000000 0111110 1111111 125789999998888889999999999986 566665444333333
Q ss_pred HHHhc-cCcEEEEEecCCChH
Q 005291 144 VNLRA-SKLKILITSATLDGE 163 (704)
Q Consensus 144 ~~~~~-~~~kiI~~SATl~~~ 163 (704)
+.... .+..+++.|+.++..
T Consensus 174 ~~lw~~~~~TvllVTHdi~EA 194 (248)
T COG1116 174 LRLWEETRKTVLLVTHDVDEA 194 (248)
T ss_pred HHHHHhhCCEEEEEeCCHHHH
Confidence 33221 257888888887644
No 197
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.91 E-value=1.7e-05 Score=83.81 Aligned_cols=144 Identities=19% Similarity=0.218 Sum_probs=82.9
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhHH----------------------HHHHHHHHHHH
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVA----------------------AVSVARRVAQE 72 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~l----------------------a~~~a~rva~~ 72 (704)
.+..|+++.+.||+||||||++..++.......|. |.+ -.+.... +.+....++..
T Consensus 29 ~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~-v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~ 107 (306)
T PRK13537 29 HVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGS-ISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRY 107 (306)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHH
Confidence 35689999999999999999999888776554432 222 1111000 01111111111
Q ss_pred hCCccC---ceeeeee-ecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc
Q 005291 73 LGVRLG---EEVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (704)
Q Consensus 73 ~~~~vg---~~vg~~~-~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~ 148 (704)
.+.... ..+..-. .+.-....+..+.-.+.|+..+..+....+.+++++|+||.- ..+|......+...+.....
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt-~gLD~~~~~~l~~~l~~l~~ 186 (306)
T PRK13537 108 FGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT-TGLDPQARHLMWERLRSLLA 186 (306)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHh
Confidence 111000 0000000 000000113345557888888888877788999999999998 78999877776666555443
Q ss_pred cCcEEEEEecCCC
Q 005291 149 SKLKILITSATLD 161 (704)
Q Consensus 149 ~~~kiI~~SATl~ 161 (704)
.+..+|+.|.-++
T Consensus 187 ~g~till~sH~l~ 199 (306)
T PRK13537 187 RGKTILLTTHFME 199 (306)
T ss_pred CCCEEEEECCCHH
Confidence 3567777776654
No 198
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.90 E-value=3.3e-05 Score=76.57 Aligned_cols=142 Identities=20% Similarity=0.209 Sum_probs=78.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhHHHHHHHHHH---HHHhCC----ccCceeeee--e
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAVSVARRV---AQELGV----RLGEEVGYA--I 85 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~la~~~a~rv---a~~~~~----~vg~~vg~~--~ 85 (704)
.+..|+.+.|+|++||||||++..+........| .|.+ -.+.........+.+ .+.... .+.+.+.+. .
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 100 (201)
T cd03231 22 TLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAG-RVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD 100 (201)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhccc
Confidence 3678999999999999999999888776554433 3332 111110000000000 000000 000000000 0
Q ss_pred ecccc-----------cCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEE
Q 005291 86 RFEDR-----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (704)
Q Consensus 86 ~~~~~-----------~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI 154 (704)
..+.. ...+..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|
T Consensus 101 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~g~tii 179 (201)
T cd03231 101 HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT-TALDKAGVARFAEAMAGHCARGGMVV 179 (201)
T ss_pred ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 00000 0012234446778888877777788899999999998 78998877776666655443355666
Q ss_pred EEecC
Q 005291 155 ITSAT 159 (704)
Q Consensus 155 ~~SAT 159 (704)
+.|.-
T Consensus 180 i~sH~ 184 (201)
T cd03231 180 LTTHQ 184 (201)
T ss_pred EEecC
Confidence 66654
No 199
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.90 E-value=0.00047 Score=80.92 Aligned_cols=116 Identities=22% Similarity=0.346 Sum_probs=85.4
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCC-CcEE-EEEcccccccccCCC
Q 005291 214 GDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN-CRRF-IVSTNIAETSLTVDG 291 (704)
Q Consensus 214 g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g-~~kI-lvaTniae~gidip~ 291 (704)
.++||||.=+..+.-+.+-|.+.. -+.+.-+-+.|+.++.+|.++.++|.++ .+.| +++|-+.+-|+|+-|
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~-------mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTG 1413 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKY-------MPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTG 1413 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhh-------cCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCC
Confidence 489999998888887777665542 1466677899999999999999999988 6665 567889999999999
Q ss_pred eEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCCCceEEEecCCccccc
Q 005291 292 VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (704)
Q Consensus 292 v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~~~~ 351 (704)
.+.||-. +-.|||-+ --+++-||-|.|-.+-=-+|||.++...+.
T Consensus 1414 ADTVVFv----EHDWNPMr-----------DLQAMDRAHRIGQKrvVNVyRlItrGTLEE 1458 (1549)
T KOG0392|consen 1414 ADTVVFV----EHDWNPMR-----------DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1458 (1549)
T ss_pred CceEEEE----ecCCCchh-----------hHHHHHHHHhhcCceeeeeeeehhcccHHH
Confidence 9999941 11244422 234445555555555556899999887655
No 200
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.90 E-value=9.6e-05 Score=78.55 Aligned_cols=131 Identities=18% Similarity=0.191 Sum_probs=79.0
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEE--EEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCccc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII--GVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~i--lv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~ 95 (704)
..+++++++||||+||||.+..+...... .+.++ +-+-|.|..+.++-+..++.++..+-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~-~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~----------------- 265 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLK-QNRTVGFITTDTFRSGAVEQFQGYADKLDVELI----------------- 265 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE-----------------
Confidence 45789999999999999887776654422 23333 33457787777766666665554310
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhccc
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~~ 169 (704)
...++.-+...+.......++++|+||=+- |+....-.+.-++.+.....++..++++|||.....+.+.+
T Consensus 266 --~~~dp~dL~~al~~l~~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 266 --VATSPAELEEAVQYMTYVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred --ecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHH
Confidence 012344444433222233578999999997 44333333343555554443366678889988765554443
No 201
>PRK14974 cell division protein FtsY; Provisional
Probab=97.89 E-value=0.00013 Score=77.43 Aligned_cols=124 Identities=19% Similarity=0.314 Sum_probs=74.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc--chhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccce
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT--QPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~--~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I 97 (704)
..+++++|++|+||||.+..+...... .+.+++++ -+.|..+.++.+..+..+|..+.. + ....
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~-~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~-------~~g~---- 205 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKK-NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--H-------KYGA---- 205 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec--c-------cCCC----
Confidence 358999999999999877766654432 23444433 345777777777777777764321 0 0000
Q ss_pred EEcchH-HHHHHHHhCCCCCCCceEEEeCCCcCCC-CHHHHHHHHHHHHHHhccCcEEEEEecCCChH
Q 005291 98 KYLTDG-VLLREILSNPDLSPYSVIILDEAHERSL-NTDILLGLVKRLVNLRASKLKILITSATLDGE 163 (704)
Q Consensus 98 ~~~T~g-~Ll~~l~~~~~l~~~~~IIiDEaHer~l-~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~ 163 (704)
.+. .+.+.+. .....++++||||.++ |+. +.+.+ .-++.+.+...++..+++++||...+
T Consensus 206 ---dp~~v~~~ai~-~~~~~~~DvVLIDTaG-r~~~~~~lm-~eL~~i~~~~~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 206 ---DPAAVAYDAIE-HAKARGIDVVLIDTAG-RMHTDANLM-DELKKIVRVTKPDLVIFVGDALAGND 267 (336)
T ss_pred ---CHHHHHHHHHH-HHHhCCCCEEEEECCC-ccCCcHHHH-HHHHHHHHhhCCceEEEeeccccchh
Confidence 111 1111111 1122468899999999 554 44444 44566666554588899999988543
No 202
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.89 E-value=1.4e-05 Score=79.88 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=45.8
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|..+
T Consensus 126 ~~~LS~G~~qrl~la~al~~~p~~lllDEP~-~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~ 188 (210)
T cd03269 126 VEELSKGNQQKVQFIAAVIHDPELLILDEPF-SGLDPVNVELLKDVIRELARAGKTVILSTHQM 188 (210)
T ss_pred HhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 3346788887777777778899999999998 78998877776666655443345666666654
No 203
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.89 E-value=4.1e-05 Score=75.94 Aligned_cols=141 Identities=22% Similarity=0.251 Sum_probs=79.4
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhHHHH---HHHHH-----HHHHhCCccCceeeeeee
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAV---SVARR-----VAQELGVRLGEEVGYAIR 86 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~la~---~~a~r-----va~~~~~~vg~~vg~~~~ 86 (704)
.+.+|+++.|+||+||||||++..+-....++ ++.+.+ -.....+-. ...++ +.+.++.-...++-.++.
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt-~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~ 105 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT-SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE 105 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCC-CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence 46789999999999999999998776666554 444333 211111110 00110 111111110000000000
Q ss_pred -------------------------cccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHH
Q 005291 87 -------------------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK 141 (704)
Q Consensus 87 -------------------------~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk 141 (704)
.++.. .+...--++.|.-.|.........++++|+.||.- -.+|.+....++.
T Consensus 106 lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~-~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPT-gnLD~~t~~~V~~ 183 (226)
T COG1136 106 LPLLIAGKSAGRRKRAAEELLEVLGLEDRL-LKKKPSELSGGQQQRVAIARALINNPKIILADEPT-GNLDSKTAKEVLE 183 (226)
T ss_pred hHHHHcCCChhHHHHHHHHHHHhcCChhhh-ccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCcc-ccCChHHHHHHHH
Confidence 00000 01223346788888888888889999999999998 6888887766666
Q ss_pred HHHHHhcc-CcEEEEEecC
Q 005291 142 RLVNLRAS-KLKILITSAT 159 (704)
Q Consensus 142 ~l~~~~~~-~~kiI~~SAT 159 (704)
.+...... +..+|+.|+.
T Consensus 184 ll~~~~~~~g~tii~VTHd 202 (226)
T COG1136 184 LLRELNKERGKTIIMVTHD 202 (226)
T ss_pred HHHHHHHhcCCEEEEEcCC
Confidence 66555432 4556665554
No 204
>PRK10536 hypothetical protein; Provisional
Probab=97.88 E-value=2.1e-05 Score=79.26 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=44.3
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcC-CCCCcEEEEcchhhH
Q 005291 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHG-YTKSGIIGVTQPRRV 60 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~-~~~~~~ilv~~P~r~ 60 (704)
-|....|...+..+.+++++++.||+|||||+++..+..... ...-.+++++.|...
T Consensus 58 ~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~ 115 (262)
T PRK10536 58 LARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ 115 (262)
T ss_pred cCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC
Confidence 367788999999999999999999999999988877666432 222347888887653
No 205
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.87 E-value=9e-05 Score=84.72 Aligned_cols=135 Identities=18% Similarity=0.237 Sum_probs=79.4
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcC---CC-CCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHG---YT-KSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 8 ~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~---~~-~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
..|++.+.....+++++|+|++|+||||.+..++.... .. ...+|+++.||.-++..+.+.+...... ...
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~-l~~---- 222 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKN-LAA---- 222 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcc-ccc----
Confidence 46777788888899999999999999988776654321 11 1247999999998888777766443210 000
Q ss_pred eeecccccCcccceEEcchHHHHHHHH-------hCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEE
Q 005291 84 AIRFEDRTSERTLIKYLTDGVLLREIL-------SNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (704)
Q Consensus 84 ~~~~~~~~~~~~~I~~~T~g~Ll~~l~-------~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~ 156 (704)
.........+...|-..++.... .......+++|||||+- +++...+..+++. .+.+.++|++
T Consensus 223 ----~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS--Mvd~~l~~~ll~a----l~~~~rlIlv 292 (586)
T TIGR01447 223 ----AEALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS--MVDLPLMAKLLKA----LPPNTKLILL 292 (586)
T ss_pred ----chhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc--cCCHHHHHHHHHh----cCCCCEEEEE
Confidence 00000000111223222221111 01123358999999995 7887766655543 3447788876
Q ss_pred e
Q 005291 157 S 157 (704)
Q Consensus 157 S 157 (704)
.
T Consensus 293 G 293 (586)
T TIGR01447 293 G 293 (586)
T ss_pred C
Confidence 4
No 206
>PF13245 AAA_19: Part of AAA domain
Probab=97.87 E-value=4.4e-05 Score=62.69 Aligned_cols=54 Identities=28% Similarity=0.375 Sum_probs=41.3
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCC---CCCcEEEEcchhhHHHHHHHHHH
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGY---TKSGIIGVTQPRRVAAVSVARRV 69 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~---~~~~~ilv~~P~r~la~~~a~rv 69 (704)
++.+++.++|.||+|||||+.+...+..... ..+..|+++.|++.++.++.+++
T Consensus 6 al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 6 ALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 5555788888999999999655555444321 12678999999999999998888
No 207
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.87 E-value=9.1e-05 Score=84.86 Aligned_cols=135 Identities=16% Similarity=0.223 Sum_probs=80.6
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcC---CCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeee
Q 005291 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHG---YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (704)
Q Consensus 8 ~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~---~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~ 84 (704)
+.|++.+.....+++++|.|++|+||||.+..++.... ......|+++.||.-+|..+.+.+....... +
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~-----~-- 227 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQL-----P-- 227 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcc-----c--
Confidence 56777777778889999999999999988776665432 1123578999999998888877765432110 0
Q ss_pred eecccccCcccceEEcchHHHHHHHH-------hCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEe
Q 005291 85 IRFEDRTSERTLIKYLTDGVLLREIL-------SNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (704)
Q Consensus 85 ~~~~~~~~~~~~I~~~T~g~Ll~~l~-------~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~S 157 (704)
..............|-..|+.... .......+++|||||+- +++...+..+++. .+++.++|++.
T Consensus 228 --~~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS--Mvd~~lm~~ll~a----l~~~~rlIlvG 299 (615)
T PRK10875 228 --LTDEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS--MVDLPMMARLIDA----LPPHARVIFLG 299 (615)
T ss_pred --cchhhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh--cccHHHHHHHHHh----cccCCEEEEec
Confidence 000000000001122222221110 01123356899999996 7887766665553 34478888875
No 208
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.86 E-value=3.2e-05 Score=75.97 Aligned_cols=135 Identities=21% Similarity=0.239 Sum_probs=64.5
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCC-CCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceee-
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG- 82 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~-~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg- 82 (704)
|....|...++++...+.+++.||.|||||.+......+... ..-.+++++.|.... .+.+|.-.|..--
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~--------~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA--------GEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T--------T----SS-------
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC--------ccccccCCCCHHHH
Confidence 677899999999999999999999999999766555544322 233588888886432 1222222221100
Q ss_pred ---eeeec----cc--------ccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh
Q 005291 83 ---YAIRF----ED--------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (704)
Q Consensus 83 ---~~~~~----~~--------~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~ 147 (704)
|.... +. .......|.+.+...+ ....+. -++||+|||+ +.-..-++.++...
T Consensus 76 ~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i-----RGrt~~-~~~iIvDEaQ------N~t~~~~k~ilTR~ 143 (205)
T PF02562_consen 76 MEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFI-----RGRTFD-NAFIIVDEAQ------NLTPEELKMILTRI 143 (205)
T ss_dssp --TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG-----TT--B--SEEEEE-SGG------G--HHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhh-----cCcccc-ceEEEEeccc------CCCHHHHHHHHccc
Confidence 00000 00 0001233444433222 112333 2899999999 33334456666666
Q ss_pred ccCcEEEEEecC
Q 005291 148 ASKLKILITSAT 159 (704)
Q Consensus 148 ~~~~kiI~~SAT 159 (704)
..+.|+|++.-.
T Consensus 144 g~~skii~~GD~ 155 (205)
T PF02562_consen 144 GEGSKIIITGDP 155 (205)
T ss_dssp -TT-EEEEEE--
T ss_pred CCCcEEEEecCc
Confidence 668899988643
No 209
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.86 E-value=2.6e-05 Score=77.69 Aligned_cols=142 Identities=20% Similarity=0.191 Sum_probs=79.7
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhHHHHHHHHHH---HHHhCC----ccCceeeeeeec
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAVSVARRV---AQELGV----RLGEEVGYAIRF 87 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~la~~~a~rv---a~~~~~----~vg~~vg~~~~~ 87 (704)
.+.+|+.+.|+||+||||||++..+........ |.|.+ -.+.... .....+ .+.... .+.+.+.+....
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~ 100 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAA-GTIKLDGGDIDDP--DVAEACHYLGHRNAMKPALTVAENLEFWAAF 100 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEECCEeCcch--hhHhhcEEecCCCcCCCCCcHHHHHHHHHHh
Confidence 456899999999999999999998887655443 33332 1111100 000000 000000 000000000000
Q ss_pred ----ccc-----------cCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcE
Q 005291 88 ----EDR-----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (704)
Q Consensus 88 ----~~~-----------~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~k 152 (704)
+.. ...+..+.-.+.|+..+..+....+.+.+++|+||.. ..+|......+...+......+..
T Consensus 101 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~t 179 (207)
T PRK13539 101 LGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPT-AALDAAAVALFAELIRAHLAQGGI 179 (207)
T ss_pred cCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHCCCE
Confidence 000 0012233346778888777777788899999999998 789988777666655544333567
Q ss_pred EEEEecCCC
Q 005291 153 ILITSATLD 161 (704)
Q Consensus 153 iI~~SATl~ 161 (704)
+|+.|.-++
T Consensus 180 iii~sH~~~ 188 (207)
T PRK13539 180 VIAATHIPL 188 (207)
T ss_pred EEEEeCCch
Confidence 777777653
No 210
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.86 E-value=5e-05 Score=75.03 Aligned_cols=139 Identities=19% Similarity=0.097 Sum_probs=78.5
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhHHH-------------------HHHHHHHHH---Hh
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAA-------------------VSVARRVAQ---EL 73 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~la-------------------~~~a~rva~---~~ 73 (704)
+.+|+.+.|+||+||||||++..+........| .|.+ -.+..... ..+.+.+.. ..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 101 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLLRPDSG-EVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIH 101 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHc
Confidence 568999999999999999999988776544433 2322 11110000 011111100 00
Q ss_pred CCccCceeee---eeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccC
Q 005291 74 GVRLGEEVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (704)
Q Consensus 74 ~~~vg~~vg~---~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~ 150 (704)
+.. ...+.. ....+. ..+..+.-.+.|+..+..+....+.+.+++|+||+. ..+|......+.+.+......+
T Consensus 102 ~~~-~~~~~~~l~~~~l~~--~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~ 177 (198)
T TIGR01189 102 GGA-QRTIEDALAAVGLTG--FEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPT-TALDKAGVALLAGLLRAHLARG 177 (198)
T ss_pred CCc-HHHHHHHHHHcCCHH--HhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhCC
Confidence 000 000000 000000 012233446778877777777788899999999998 7899887777666665543335
Q ss_pred cEEEEEecCC
Q 005291 151 LKILITSATL 160 (704)
Q Consensus 151 ~kiI~~SATl 160 (704)
..+|+.|.-.
T Consensus 178 ~tii~~sH~~ 187 (198)
T TIGR01189 178 GIVLLTTHQD 187 (198)
T ss_pred CEEEEEEccc
Confidence 6777777643
No 211
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.85 E-value=4.7e-05 Score=80.09 Aligned_cols=133 Identities=14% Similarity=0.053 Sum_probs=69.6
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHh---cCC-CCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeec-----c
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHR---HGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF-----E 88 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~---~~~-~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~-----~ 88 (704)
....-.++.-++|+|||..+..++.. ... .....++|+.|. .+..+....+.+.........+-+.-.. .
T Consensus 23 ~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLS 101 (299)
T ss_dssp TTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTT
T ss_pred cCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcccccccccccccccccccccccc
Confidence 35567788889999999555544442 211 112358889998 5566777777766632111222211111 1
Q ss_pred cccCcccceEEcchHHHH--------HHHHhCCCCCCCceEEEeCCCcC-CCCHHHHHHHHHHHHHHhccCcEEEEEecC
Q 005291 89 DRTSERTLIKYLTDGVLL--------REILSNPDLSPYSVIILDEAHER-SLNTDILLGLVKRLVNLRASKLKILITSAT 159 (704)
Q Consensus 89 ~~~~~~~~I~~~T~g~Ll--------~~l~~~~~l~~~~~IIiDEaHer-~l~~d~l~~llk~l~~~~~~~~kiI~~SAT 159 (704)
........++++|...+. ..+.. .++++||+||+|.- ..++... +.+.... ....+++|||
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~----~~~~~vIvDEaH~~k~~~s~~~----~~l~~l~--~~~~~lLSgT 171 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDLKQ----IKWDRVIVDEAHRLKNKDSKRY----KALRKLR--ARYRWLLSGT 171 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHHHT----SEEEEEEETTGGGGTTTTSHHH----HHHHCCC--ECEEEEE-SS
T ss_pred ccccccceeeecccccccccccccccccccc----ccceeEEEeccccccccccccc----ccccccc--cceEEeeccc
Confidence 222345789999998887 12221 34899999999952 2222222 2222222 4567889999
Q ss_pred CC
Q 005291 160 LD 161 (704)
Q Consensus 160 l~ 161 (704)
+-
T Consensus 172 P~ 173 (299)
T PF00176_consen 172 PI 173 (299)
T ss_dssp -S
T ss_pred cc
Confidence 73
No 212
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.85 E-value=4.5e-05 Score=76.45 Aligned_cols=62 Identities=11% Similarity=0.251 Sum_probs=46.5
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......+..+|+.|.-+
T Consensus 137 ~~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~ 198 (216)
T TIGR00960 137 MQLSGGEQQRVAIARAIVHKPPLLLADEPT-GNLDPELSRDIMRLFEEFNRRGTTVLVATHDI 198 (216)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 346778888888777788999999999998 78999887776666655443356677776654
No 213
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.85 E-value=1.9e-05 Score=78.47 Aligned_cols=64 Identities=23% Similarity=0.243 Sum_probs=47.3
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|.-++
T Consensus 132 ~~~lS~G~~qr~~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 195 (206)
T TIGR03608 132 IYELSGGEQQRVALARAILKDPPLILADEPT-GSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195 (206)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-CCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4446788887777777788899999999998 789988777766666554433567777777653
No 214
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.85 E-value=1.4e-05 Score=80.29 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=47.3
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~ 161 (704)
.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+..... .+..+|+.|..++
T Consensus 139 ~~LS~G~~qrv~la~al~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 202 (218)
T cd03255 139 SELSGGQQQRVAIARALANDPKIILADEPT-GNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE 202 (218)
T ss_pred hhcCHHHHHHHHHHHHHccCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 346778888877777788899999999998 78998877776666655443 2567888877654
No 215
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.85 E-value=0.0002 Score=70.27 Aligned_cols=64 Identities=22% Similarity=0.286 Sum_probs=47.3
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|.-++
T Consensus 125 ~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 125 THCLSGGEKKRVAIAGAVAMRPDVLLLDEPT-AGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 3446778877777777778899999999998 789988777766666554433567888776543
No 216
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.84 E-value=3.4e-05 Score=73.09 Aligned_cols=144 Identities=25% Similarity=0.310 Sum_probs=84.7
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEE----------------------EcchhhHHH-HHHHHHHHHH
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG----------------------VTQPRRVAA-VSVARRVAQE 72 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~il----------------------v~~P~r~la-~~~a~rva~~ 72 (704)
.+..|+.+.++||+|+||||++..++.+...+.|...+ |.|-.|.+. ..+++.++--
T Consensus 24 ~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 24 HIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred eecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 46789999999999999999999998887765543222 222222211 1122222111
Q ss_pred hCC-------------ccCceeeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHH
Q 005291 73 LGV-------------RLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGL 139 (704)
Q Consensus 73 ~~~-------------~vg~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~l 139 (704)
+.. .+-..||..-+.. .-=.-.+.|.-.|........+++.+++-||.. =.+|.+....+
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~------~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPT-GNLDp~~s~~i 176 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKAR------ALPSQLSGGEQQRVAIARAIVNQPAVLLADEPT-GNLDPDLSWEI 176 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhh------cCccccCchHHHHHHHHHHHccCCCeEeecCCC-CCCChHHHHHH
Confidence 100 0001111100000 001124566667777777788899999999998 68999988777
Q ss_pred HHHHHHHhccCcEEEEEecCCChHHHhcc
Q 005291 140 VKRLVNLRASKLKILITSATLDGEKVSKF 168 (704)
Q Consensus 140 lk~l~~~~~~~~kiI~~SATl~~~~~~~~ 168 (704)
++-+......+..+++ ||.|.+.+..+
T Consensus 177 m~lfeeinr~GtTVl~--ATHd~~lv~~~ 203 (223)
T COG2884 177 MRLFEEINRLGTTVLM--ATHDLELVNRM 203 (223)
T ss_pred HHHHHHHhhcCcEEEE--EeccHHHHHhc
Confidence 7666655443444444 77777766665
No 217
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.84 E-value=6.4e-05 Score=74.73 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=79.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cch---------------hh--HH-HHHHHHHHHHHhCCc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQP---------------RR--VA-AVSVARRVAQELGVR 76 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P---------------~r--~l-a~~~a~rva~~~~~~ 76 (704)
.+..|+.+.|.||+||||||++..+........| .|.+ -.+ .. .. ...+.+.+......
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~- 99 (205)
T cd03226 22 DLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG-SILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKE- 99 (205)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhh-
Confidence 3678999999999999999999988876554433 2222 111 10 00 01111111100000
Q ss_pred cCc---eeee---eeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccC
Q 005291 77 LGE---EVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (704)
Q Consensus 77 vg~---~vg~---~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~ 150 (704)
.+. .+.. ...... ..+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+...+......+
T Consensus 100 ~~~~~~~~~~~l~~~~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~ 176 (205)
T cd03226 100 LDAGNEQAETVLKDLDLYA--LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT-SGLDYKNMERVGELIRELAAQG 176 (205)
T ss_pred cCccHHHHHHHHHHcCCch--hcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHCC
Confidence 000 0000 000000 012334456888888887777778899999999998 7899987776666555543335
Q ss_pred cEEEEEecCC
Q 005291 151 LKILITSATL 160 (704)
Q Consensus 151 ~kiI~~SATl 160 (704)
..+|+.|.-+
T Consensus 177 ~tii~~sH~~ 186 (205)
T cd03226 177 KAVIVITHDY 186 (205)
T ss_pred CEEEEEeCCH
Confidence 6677766654
No 218
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.84 E-value=1.8e-05 Score=84.86 Aligned_cols=145 Identities=20% Similarity=0.195 Sum_probs=83.3
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhh----------------------HHHHHHHHHHHHHh
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR----------------------VAAVSVARRVAQEL 73 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r----------------------~la~~~a~rva~~~ 73 (704)
.+..|+++.++||+|+||||++..++.......|...+.-.+.. ..+.+....++...
T Consensus 63 ~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~ 142 (340)
T PRK13536 63 TVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF 142 (340)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc
Confidence 35689999999999999999999888876554332221111100 00111111111111
Q ss_pred CCccC---ceeeeee-ecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc
Q 005291 74 GVRLG---EEVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (704)
Q Consensus 74 ~~~vg---~~vg~~~-~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~ 149 (704)
+.... ..+..-. .+.-....+..+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+...+......
T Consensus 143 ~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt-~gLD~~~r~~l~~~l~~l~~~ 221 (340)
T PRK13536 143 GMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPT-TGLDPHARHLIWERLRSLLAR 221 (340)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhC
Confidence 10000 0000000 000000123445557888888888877788899999999998 799998877766666655443
Q ss_pred CcEEEEEecCCC
Q 005291 150 KLKILITSATLD 161 (704)
Q Consensus 150 ~~kiI~~SATl~ 161 (704)
+..+|+.|+-++
T Consensus 222 g~tilisSH~l~ 233 (340)
T PRK13536 222 GKTILLTTHFME 233 (340)
T ss_pred CCEEEEECCCHH
Confidence 567777777653
No 219
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.83 E-value=0.00012 Score=85.62 Aligned_cols=167 Identities=17% Similarity=0.186 Sum_probs=98.5
Q ss_pred EEEEEecCCChH--HHhcccCCCCccccCCCcCcee------EEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCH
Q 005291 152 KILITSATLDGE--KVSKFFSNCPTLNVPGKLYPVE------ILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQ 223 (704)
Q Consensus 152 kiI~~SATl~~~--~~~~~~~~~~~i~i~~~~~pv~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 223 (704)
++-+||.|...+ .|.+.+ +-.++.+|... |+. ..|.. ......+.++.+...|. .+-+|||-+.+.
T Consensus 565 kLsGMTGTA~tea~Ef~~IY-~L~Vv~IPTnr-P~~R~D~~D~vy~t--~~eK~~Aii~ei~~~~~--~GrPVLVGT~SV 638 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIY-KLDVVVIPTNR-PIARKDKEDLVYKT--KREKYNAVIEEITELSE--AGRPVLVGTTSV 638 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHh-CCCEEECCCCC-CcceecCCCeEecC--HHHHHHHHHHHHHHHHH--CCCCEEEEeCcH
Confidence 677888887433 254444 45566676532 221 11211 12234556666666663 566999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCcccc
Q 005291 224 DDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQ 303 (704)
Q Consensus 224 ~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~ 303 (704)
+..+.+++.|... ++..-.|++.....|-.-|-+.=.. -.|.||||.|++|-||.==.-|..
T Consensus 639 e~SE~lS~~L~~~----------gI~H~VLNAK~h~~EAeIVA~AG~~--GaVTIATNMAGRGTDIkLg~~V~e------ 700 (1112)
T PRK12901 639 EISELLSRMLKMR----------KIPHNVLNAKLHQKEAEIVAEAGQP--GTVTIATNMAGRGTDIKLSPEVKA------ 700 (1112)
T ss_pred HHHHHHHHHHHHc----------CCcHHHhhccchhhHHHHHHhcCCC--CcEEEeccCcCCCcCcccchhhHH------
Confidence 9999999999875 3333334444333333333333333 369999999999999961111111
Q ss_pred ccccCCCCcccccc-ccccHHhHHhhccccCCC-CCceEEEecCCc
Q 005291 304 RQYNPSSGMYSLDV-VQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (704)
Q Consensus 304 ~~~~~~~g~~~l~~-~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~ 347 (704)
..|+..+.+ .+.|.--=.|-.|||||+ .||.+-.+.|-+
T Consensus 701 -----~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLE 741 (1112)
T PRK12901 701 -----AGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLE 741 (1112)
T ss_pred -----cCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcc
Confidence 112222222 355666667999999999 588765554433
No 220
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=5.9e-05 Score=85.01 Aligned_cols=147 Identities=26% Similarity=0.289 Sum_probs=90.3
Q ss_pred HHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHH----HHHH---hCCccCceeeee
Q 005291 12 TIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR----VAQE---LGVRLGEEVGYA 84 (704)
Q Consensus 12 ~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~r----va~~---~~~~vg~~vg~~ 84 (704)
.+-=.|..|+++.++||.|+||||.+..++....+..|...+--.|.+..-....++ |.+| ++..+.+.+.|+
T Consensus 486 ~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG 565 (716)
T KOG0058|consen 486 NLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYG 565 (716)
T ss_pred CceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcC
Confidence 344467899999999999999999998877776666555555577766554333332 2222 233344444454
Q ss_pred eecccc------------------cCc--cc----ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHH
Q 005291 85 IRFEDR------------------TSE--RT----LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLV 140 (704)
Q Consensus 85 ~~~~~~------------------~~~--~~----~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~ll 140 (704)
...... ... +| +=.-++.|.-.|..+...+++++.++|+|||. ..+|...-. ++
T Consensus 566 ~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEAT-SALDaeSE~-lV 643 (716)
T KOG0058|consen 566 LDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEAT-SALDAESEY-LV 643 (716)
T ss_pred CCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechh-hhcchhhHH-HH
Confidence 331100 000 01 11125678888888888899999999999998 667765433 34
Q ss_pred HHHHHHhccCcEEEEEecCC
Q 005291 141 KRLVNLRASKLKILITSATL 160 (704)
Q Consensus 141 k~l~~~~~~~~kiI~~SATl 160 (704)
++.+.....+..+|+.-+-+
T Consensus 644 q~aL~~~~~~rTVlvIAHRL 663 (716)
T KOG0058|consen 644 QEALDRLMQGRTVLVIAHRL 663 (716)
T ss_pred HHHHHHhhcCCeEEEEehhh
Confidence 44444333365666665443
No 221
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.82 E-value=0.0033 Score=68.64 Aligned_cols=232 Identities=15% Similarity=0.050 Sum_probs=145.9
Q ss_pred ccceEEcchHHHHHHHHh------C-CCCCCCceEEEeCCCcC-CCCHHHHHHHHHHHHHHhc-----------------
Q 005291 94 RTLIKYLTDGVLLREILS------N-PDLSPYSVIILDEAHER-SLNTDILLGLVKRLVNLRA----------------- 148 (704)
Q Consensus 94 ~~~I~~~T~g~Ll~~l~~------~-~~l~~~~~IIiDEaHer-~l~~d~l~~llk~l~~~~~----------------- 148 (704)
+.+|++++|=-|...+-. + ..|+.+.++|+|.+|-. +-+-+.+..+++.+- ..|
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN-~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLN-LQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhc-cCCCCCCCCCHHHHHHHHHc
Confidence 578999999766555542 1 17999999999999831 112233333333221 111
Q ss_pred ----cCcEEEEEecCCChHH---HhcccCCC----Cc-------cccCCCcCceeEEecCCCCcch-------HHHHHHH
Q 005291 149 ----SKLKILITSATLDGEK---VSKFFSNC----PT-------LNVPGKLYPVEILHSKERPTSY-------LESALKT 203 (704)
Q Consensus 149 ----~~~kiI~~SATl~~~~---~~~~~~~~----~~-------i~i~~~~~pv~~~~~~~~~~~~-------~~~~~~~ 203 (704)
.-.|.|++|+...++. +..++.|. .+ -.+..-..++...|......+. +.--.+.
T Consensus 210 g~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~ 289 (442)
T PF06862_consen 210 GQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKK 289 (442)
T ss_pred CcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHH
Confidence 1258999999987764 33322220 00 0111122334444433222111 1111223
Q ss_pred HHHHHc-cCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEccc
Q 005291 204 AIDIHV-REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNI 282 (704)
Q Consensus 204 ~~~i~~-~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTni 282 (704)
++.... ....+.+|||+|+--+--.+...|.+. ++....+|--.+..+-.++-..|-.|+.+|++-|-=
T Consensus 290 iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~----------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER 359 (442)
T PF06862_consen 290 ILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE----------NISFVQISEYTSNSDISRARSQFFHGRKPILLYTER 359 (442)
T ss_pred HHHHhhhccCCCcEEEEecchhhhHHHHHHHHhc----------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhH
Confidence 333333 566789999999999999999988853 777888888888888888888899999999999953
Q ss_pred cc--ccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCC----CCCceEEEecCCccccc
Q 005291 283 AE--TSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGR----TRPGKCYRLYPSTVYHD 351 (704)
Q Consensus 283 ae--~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR----~~~G~c~~L~~~~~~~~ 351 (704)
+- +=..|.||+.||-+| +|..|.=+.+.....+.... ...+.|..||++-+...
T Consensus 360 ~HFfrRy~irGi~~viFY~---------------~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~ 419 (442)
T PF06862_consen 360 FHFFRRYRIRGIRHVIFYG---------------PPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALR 419 (442)
T ss_pred HhhhhhceecCCcEEEEEC---------------CCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHH
Confidence 22 345788999999855 55556666666666655543 25679999999876644
No 222
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.82 E-value=0.00022 Score=71.26 Aligned_cols=64 Identities=13% Similarity=0.255 Sum_probs=46.6
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+.+.+++|+||+. ..+|.+....+.+.+......+..+|+.|.-+
T Consensus 132 ~~~~LS~G~~qrv~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~ 195 (213)
T cd03262 132 YPAQLSGGQQQRVAIARALAMNPKVMLFDEPT-SALDPELVGEVLDVMKDLAEEGMTMVVVTHEM 195 (213)
T ss_pred CccccCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 34456788887777777788899999999998 78998877766666655443356677766644
No 223
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.81 E-value=4.3e-05 Score=75.16 Aligned_cols=144 Identities=20% Similarity=0.194 Sum_probs=81.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeee-----------
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA----------- 84 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~----------- 84 (704)
.+..|+.+-+.||+|+||||.+..++.....+.|.+-+--.|....+.+.--.+-+++|.....++-.+
T Consensus 24 ~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~ 103 (300)
T COG4152 24 EVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMP 103 (300)
T ss_pred eecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCc
Confidence 356899999999999999999999998877766655555555333222222222334333221111100
Q ss_pred ------------eecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcE
Q 005291 85 ------------IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (704)
Q Consensus 85 ------------~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~k 152 (704)
-+++-......+|.-.+-|.-...-+-...+.++.+||+||.- ..+|.--...+-..+...+..+..
T Consensus 104 ~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPF-SGLDPVN~elLk~~I~~lk~~Gat 182 (300)
T COG4152 104 KAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPF-SGLDPVNVELLKDAIFELKEEGAT 182 (300)
T ss_pred HHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCc-cCCChhhHHHHHHHHHHHHhcCCE
Confidence 0111111122334444555443333222356788999999997 677765444433445555555667
Q ss_pred EEEEecCC
Q 005291 153 ILITSATL 160 (704)
Q Consensus 153 iI~~SATl 160 (704)
+|+.|+-|
T Consensus 183 IifSsH~M 190 (300)
T COG4152 183 IIFSSHRM 190 (300)
T ss_pred EEEecchH
Confidence 77776666
No 224
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.80 E-value=0.00017 Score=84.85 Aligned_cols=122 Identities=21% Similarity=0.242 Sum_probs=78.0
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCC-CcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTK-SGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~-~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
.+.+-|.+.+..+..+++++|+|++|+||||++..++....... ...|+++.|+..+|..+ .+..|...
T Consensus 323 ~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L----~e~~g~~a------ 392 (720)
T TIGR01448 323 GLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRL----GEVTGLTA------ 392 (720)
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHH----HHhcCCcc------
Confidence 45677888888888999999999999999998877665443221 15788899998877644 33333210
Q ss_pred eeecccccCcccceEEcchHHHHHHHH------hCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEe
Q 005291 84 AIRFEDRTSERTLIKYLTDGVLLREIL------SNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (704)
Q Consensus 84 ~~~~~~~~~~~~~I~~~T~g~Ll~~l~------~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~S 157 (704)
.|-..++.... ........++|||||++ +++...+..+++. .+.+.++|++.
T Consensus 393 ----------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaS--Mvd~~~~~~Ll~~----~~~~~rlilvG 450 (720)
T TIGR01448 393 ----------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESS--MMDTWLALSLLAA----LPDHARLLLVG 450 (720)
T ss_pred ----------------ccHHHHhhccCCccchhhhhccccCCEEEEeccc--cCCHHHHHHHHHh----CCCCCEEEEEC
Confidence 01111111000 00112457899999998 7887766665543 34478888876
Q ss_pred c
Q 005291 158 A 158 (704)
Q Consensus 158 A 158 (704)
=
T Consensus 451 D 451 (720)
T TIGR01448 451 D 451 (720)
T ss_pred c
Confidence 3
No 225
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.79 E-value=0.00016 Score=71.52 Aligned_cols=134 Identities=21% Similarity=0.212 Sum_probs=78.8
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc-CCCCCcEEEE-cchhhHHHHHHHHHHHHHhCCccCceeeeeeec----cc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF----ED 89 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~-~~~~~~~ilv-~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~----~~ 89 (704)
.+..|+.+.|.||+||||||++..+.... .....+.|.+ -++....... .+.. ..++|.... ..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~--~~~~--------~~i~~v~q~~~~~~~ 91 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE--ERAR--------LGIFLAFQYPPEIPG 91 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHH--HHhh--------CcEEEeecChhhccC
Confidence 46789999999999999999999887763 1223444443 2332111100 0000 012221000 00
Q ss_pred ccC-cc-cce-EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 90 RTS-ER-TLI-KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 90 ~~~-~~-~~I-~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
... .. ... .-.+.|+..+..+....+.+.+++++||+- ..+|......++..+......+..+|+.|.-+
T Consensus 92 ~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~ 164 (200)
T cd03217 92 VKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPD-SGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164 (200)
T ss_pred ccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 000 00 111 246788888888877788899999999998 78998877666666655443245666666554
No 226
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.78 E-value=8.7e-05 Score=74.31 Aligned_cols=142 Identities=21% Similarity=0.208 Sum_probs=78.8
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE---------------EEEcchhhHHH--HHHHHHHHHH--h-CC
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI---------------IGVTQPRRVAA--VSVARRVAQE--L-GV 75 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~---------------ilv~~P~r~la--~~~a~rva~~--~-~~ 75 (704)
.+..|+.+.|+||+||||||++..+........|.. +.++.+...+. .++.+.+... . +.
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~ 112 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGR 112 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCC
Confidence 356899999999999999999998887655443321 11111100000 0111111000 0 00
Q ss_pred ccCceee---eeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcE
Q 005291 76 RLGEEVG---YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (704)
Q Consensus 76 ~vg~~vg---~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~k 152 (704)
.....+. ..+.... ..+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......+..
T Consensus 113 ~~~~~~~~~l~~~~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~t 189 (214)
T PRK13543 113 RAKQMPGSALAIVGLAG--YEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPY-ANLDLEGITLVNRMISAHLRGGGA 189 (214)
T ss_pred cHHHHHHHHHHHcCChh--hccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCE
Confidence 0000000 0000000 013344557888888887777788899999999998 788888766655555444333566
Q ss_pred EEEEecCC
Q 005291 153 ILITSATL 160 (704)
Q Consensus 153 iI~~SATl 160 (704)
+|+.|.-+
T Consensus 190 iii~sH~~ 197 (214)
T PRK13543 190 ALVTTHGA 197 (214)
T ss_pred EEEEecCh
Confidence 77766654
No 227
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.78 E-value=6.2e-05 Score=76.99 Aligned_cols=137 Identities=12% Similarity=0.172 Sum_probs=79.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc------EEEEcchhh-----HHHHHHHHHHHHHhCC------ccCc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG------IIGVTQPRR-----VAAVSVARRVAQELGV------RLGE 79 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~------~ilv~~P~r-----~la~~~a~rva~~~~~------~vg~ 79 (704)
+..|+++.|+||+||||||++..+........|. .+.++.... ..+.+.........+. ..-.
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~ 101 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAK 101 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHH
Confidence 4678999999999999999999887766544332 222221110 0111111110000000 0000
Q ss_pred eeeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEec
Q 005291 80 EVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSA 158 (704)
Q Consensus 80 ~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SA 158 (704)
.+| .+. ..+..+.-.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+..... .+..+|+.|.
T Consensus 102 ~l~----l~~--~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH 174 (246)
T cd03237 102 PLQ----IEQ--ILDREVPELSGGELQRVAIAACLSKDADIYLLDEPS-AYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174 (246)
T ss_pred HcC----CHH--HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 011 000 012334457889998888888888999999999998 78898877666655555432 1466777766
Q ss_pred CC
Q 005291 159 TL 160 (704)
Q Consensus 159 Tl 160 (704)
-+
T Consensus 175 d~ 176 (246)
T cd03237 175 DI 176 (246)
T ss_pred CH
Confidence 54
No 228
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.78 E-value=4.5e-05 Score=76.01 Aligned_cols=142 Identities=23% Similarity=0.302 Sum_probs=76.3
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhHHHHHHHHHH---HHHhC----CccCceeeeee--
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAVSVARRV---AQELG----VRLGEEVGYAI-- 85 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~la~~~a~rv---a~~~~----~~vg~~vg~~~-- 85 (704)
.+.+|+.+.|.||+||||||++..+........| .|.+ -.+.... ....+.+ .+... ..+.+.+.+..
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 99 (208)
T cd03268 22 HVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG-EITFDGKSYQKN-IEALRRIGALIEAPGFYPNLTARENLRLLARL 99 (208)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCCcccch-HHHHhhEEEecCCCccCccCcHHHHHHHHHHh
Confidence 3568999999999999999999988876554433 3332 1221100 0000000 00000 00000000000
Q ss_pred e-c-ccc-----------cCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcE
Q 005291 86 R-F-EDR-----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (704)
Q Consensus 86 ~-~-~~~-----------~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~k 152 (704)
. . ... ...+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......+..
T Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~t 178 (208)
T cd03268 100 LGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT-NGLDPDGIKELRELILSLRDQGIT 178 (208)
T ss_pred cCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc-ccCCHHHHHHHHHHHHHHHHCCCE
Confidence 0 0 000 0001223335677777776666678889999999998 789988877766666554432455
Q ss_pred EEEEecCC
Q 005291 153 ILITSATL 160 (704)
Q Consensus 153 iI~~SATl 160 (704)
+|+.|.-+
T Consensus 179 ii~~tH~~ 186 (208)
T cd03268 179 VLISSHLL 186 (208)
T ss_pred EEEEcCCH
Confidence 66665543
No 229
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.78 E-value=5.7e-05 Score=75.42 Aligned_cols=64 Identities=22% Similarity=0.202 Sum_probs=47.8
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|.-+
T Consensus 131 ~~~~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~ 194 (211)
T cd03225 131 SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPT-AGLDPAGRRELLELLKKLKAEGKTIIIVTHDL 194 (211)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 34457888888888777788899999999998 78999887777666665544356677776654
No 230
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.77 E-value=8.9e-05 Score=80.15 Aligned_cols=94 Identities=16% Similarity=0.234 Sum_probs=59.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc-CCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccceEE
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKY 99 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~-~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I~~ 99 (704)
++++|.|.+|||||.++..++... ....+..++++.+...+...+.+.++.... .......+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~-----------------~~~~~~~~ 64 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYN-----------------PKLKKSDF 64 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcc-----------------cchhhhhh
Confidence 578999999999998887777765 123455677777777887777777755430 00011122
Q ss_pred cchHHHHHHH-HhCCCCCCCceEEEeCCCcCCCC
Q 005291 100 LTDGVLLREI-LSNPDLSPYSVIILDEAHERSLN 132 (704)
Q Consensus 100 ~T~g~Ll~~l-~~~~~l~~~~~IIiDEaHer~l~ 132 (704)
..+..+.... ........+++||+|||| |...
T Consensus 65 ~~~~~~i~~~~~~~~~~~~~DviivDEAq-rl~~ 97 (352)
T PF09848_consen 65 RKPTSFINNYSESDKEKNKYDVIIVDEAQ-RLRT 97 (352)
T ss_pred hhhHHHHhhcccccccCCcCCEEEEehhH-hhhh
Confidence 2333332222 233467889999999999 5554
No 231
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.00028 Score=76.90 Aligned_cols=127 Identities=21% Similarity=0.235 Sum_probs=78.6
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCC---CCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYT---KSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSER 94 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~~~~---~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~ 94 (704)
..++++.++||||+||||.+..+....... ....++..-..|..+.++...+++.+|+.+. +.
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--~v------------ 254 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--SI------------ 254 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee--cC------------
Confidence 467899999999999999887766543111 1223444555678888887778877765431 10
Q ss_pred cceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhc
Q 005291 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSK 167 (704)
Q Consensus 95 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~ 167 (704)
-++.-+...+. .+.+.++++||.+- |+-....+...++.+.....+.-.++++|||...+.+.+
T Consensus 255 -----~~~~dl~~al~---~l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~ 318 (420)
T PRK14721 255 -----KDIADLQLMLH---ELRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE 318 (420)
T ss_pred -----CCHHHHHHHHH---HhcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH
Confidence 11222222222 25678999999986 444334455556665443332456788999987666544
No 232
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.77 E-value=0.00028 Score=71.15 Aligned_cols=64 Identities=23% Similarity=0.291 Sum_probs=47.6
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+......+..+|+.|.-++
T Consensus 111 ~~~LS~G~~qrv~laral~~~p~llilDEP~-~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~ 174 (223)
T TIGR03771 111 VGELSGGQRQRVLVARALATRPSVLLLDEPF-TGLDMPTQELLTELFIELAGAGTAILMTTHDLA 174 (223)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3446788888877777788899999999998 789988877766666554433567777776543
No 233
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.77 E-value=2.7e-05 Score=77.95 Aligned_cols=62 Identities=16% Similarity=0.288 Sum_probs=46.1
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|+-+
T Consensus 136 ~~LS~G~~qrl~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~ 197 (214)
T TIGR02673 136 EQLSGGEQQRVAIARAIVNSPPLLLADEPT-GNLDPDLSERILDLLKRLNKRGTTVIVATHDL 197 (214)
T ss_pred hhCCHHHHHHHHHHHHHhCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 346778888877777788899999999998 78999887776666655433356677776654
No 234
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.77 E-value=3.6e-05 Score=78.12 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=49.2
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCChHHHhccc
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~~~~~~~~~ 169 (704)
+.-.+.|+..+..+....+.+.+++|+||+. ..+|......+.+.+...... +..+|+.|.-+ +.+..+.
T Consensus 138 ~~~LS~G~~qrv~la~al~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~--~~~~~~~ 208 (233)
T cd03258 138 PAQLSGGQKQRVGIARALANNPKVLLCDEAT-SALDPETTQSILALLRDINRELGLTIVLITHEM--EVVKRIC 208 (233)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCC-CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH--HHHHHhC
Confidence 3346788888877777788899999999998 789988777766666554432 56677776654 3344443
No 235
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.76 E-value=3.1e-05 Score=78.76 Aligned_cols=63 Identities=16% Similarity=0.126 Sum_probs=46.5
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... .+..+|+.|.-+
T Consensus 134 ~~~LSgG~~qrv~ia~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~ 197 (235)
T cd03261 134 PAELSGGMKKRVALARALALDPELLLYDEPT-AGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL 197 (235)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 3446788888888777788899999999998 78998877666666555433 156677777654
No 236
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.76 E-value=2.7e-05 Score=82.26 Aligned_cols=142 Identities=20% Similarity=0.240 Sum_probs=81.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhHHHHH-------------------HHHHH---HHHh
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAVS-------------------VARRV---AQEL 73 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~la~~-------------------~a~rv---a~~~ 73 (704)
+.+|+++.|.||+|+||||++..++.......| .|.+ -.+....... +.+.+ +...
T Consensus 25 i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G-~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~ 103 (301)
T TIGR03522 25 AQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSG-SVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY 103 (301)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc
Confidence 568999999999999999999988876555433 3322 1111000000 01111 0111
Q ss_pred CCccC---ceeeeee-ecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc
Q 005291 74 GVRLG---EEVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (704)
Q Consensus 74 ~~~vg---~~vg~~~-~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~ 149 (704)
+.... ..+.... .+.-....+..+.-.+.|+..+..+....+.++.++|+||+- ..+|......+.+.+.....
T Consensus 104 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt-~gLD~~~~~~l~~~l~~~~~- 181 (301)
T TIGR03522 104 GMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT-TGLDPNQLVEIRNVIKNIGK- 181 (301)
T ss_pred CCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHhcC-
Confidence 10000 0000000 000000013345567889888888888889999999999998 78998877776666655543
Q ss_pred CcEEEEEecCCC
Q 005291 150 KLKILITSATLD 161 (704)
Q Consensus 150 ~~kiI~~SATl~ 161 (704)
+..+|+.|+-++
T Consensus 182 ~~tiii~sH~l~ 193 (301)
T TIGR03522 182 DKTIILSTHIMQ 193 (301)
T ss_pred CCEEEEEcCCHH
Confidence 666777766654
No 237
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.76 E-value=4.3e-05 Score=76.88 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=47.0
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|.-+
T Consensus 128 ~~~~LS~G~~qr~~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~ 192 (220)
T cd03265 128 LVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT-IGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM 192 (220)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 34456788888888777788999999999998 789988777666666554432 45677766654
No 238
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.76 E-value=4.2e-05 Score=76.75 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=44.9
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|.-+
T Consensus 135 ~~LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~ 196 (218)
T cd03266 135 GGFSTGMRQKVAIARALVHDPPVLLLDEPT-TGLDVMATRALREFIRQLRALGKCILFSTHIM 196 (218)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 345777777777777778899999999998 78998877776666655443356677766654
No 239
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.76 E-value=2.6e-05 Score=78.52 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=45.8
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++++||+- ..+|......+++.+......+..+|+.|..+
T Consensus 130 ~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 192 (222)
T cd03224 130 AGTLSGGEQQMLAIARALMSRPKLLLLDEPS-EGLAPKIVEEIFEAIRELRDEGVTILLVEQNA 192 (222)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEECCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3346777777777776778899999999998 78999877776666655443356777777654
No 240
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.76 E-value=9.2e-05 Score=73.28 Aligned_cols=151 Identities=22% Similarity=0.212 Sum_probs=90.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc---chhhHH---------HHHHHHHHHHHhCCccCc---ee
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT---QPRRVA---------AVSVARRVAQELGVRLGE---EV 81 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~---~P~r~l---------a~~~a~rva~~~~~~vg~---~v 81 (704)
+.+|+.+.|+|++||||||++..+.....++.| .|.+. .|.-.+ ..+...-....+|..-.+ .+
T Consensus 50 i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G-~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~ 128 (249)
T COG1134 50 IYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG-KVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKV 128 (249)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCccCCCCc-eEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHH
Confidence 457889999999999999999888777666544 33331 111111 111111112222211000 00
Q ss_pred eeeeeccccc-CcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 82 GYAIRFEDRT-SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 82 g~~~~~~~~~-~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
..-+.|...- --+..+.--+.||..|...+-..-.+++++|+||+= ---|..|......++.....++..+|+.|..+
T Consensus 129 ~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvl-avGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~ 207 (249)
T COG1134 129 DEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVL-AVGDAAFQEKCLERLNELVEKNKTIVLVSHDL 207 (249)
T ss_pred HHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhh-hcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH
Confidence 0000000000 013456667889999999887778889999999996 56777888888888877744477777777654
Q ss_pred ChHHHhcccCC
Q 005291 161 DGEKVSKFFSN 171 (704)
Q Consensus 161 ~~~~~~~~~~~ 171 (704)
..+++|.+.
T Consensus 208 --~~I~~~Cd~ 216 (249)
T COG1134 208 --GAIKQYCDR 216 (249)
T ss_pred --HHHHHhcCe
Confidence 456666543
No 241
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.75 E-value=0.00017 Score=65.75 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=26.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcch
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P 57 (704)
++.+++.||+||||||++..++....... ..++++.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~ 38 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDG 38 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECC
Confidence 57899999999999999988877665432 23444444
No 242
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.75 E-value=5.2e-05 Score=77.87 Aligned_cols=138 Identities=20% Similarity=0.270 Sum_probs=78.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc-------EEEEcchhhHHH----HHHHHHHHHHhCCc------cCc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG-------IIGVTQPRRVAA----VSVARRVAQELGVR------LGE 79 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~-------~ilv~~P~r~la----~~~a~rva~~~~~~------vg~ 79 (704)
+..|+.+.|.||+||||||++..+........|. .+.++.....+. ..+...+....+.. .-.
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 106 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALK 106 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHH
Confidence 5689999999999999999999887765443331 122221110000 01111110000000 000
Q ss_pred eeeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEec
Q 005291 80 EVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSA 158 (704)
Q Consensus 80 ~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SA 158 (704)
.+| ... ..+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+...... +..+|+.|.
T Consensus 107 ~~g----l~~--~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH 179 (251)
T PRK09544 107 RVQ----AGH--LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPT-QGVDVNGQVALYDLIDQLRRELDCAVLMVSH 179 (251)
T ss_pred HcC----ChH--HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 000 000 012334557888888888777788899999999998 789988776666555554332 466777666
Q ss_pred CCC
Q 005291 159 TLD 161 (704)
Q Consensus 159 Tl~ 161 (704)
-++
T Consensus 180 ~~~ 182 (251)
T PRK09544 180 DLH 182 (251)
T ss_pred CHH
Confidence 543
No 243
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.75 E-value=0.00022 Score=71.31 Aligned_cols=64 Identities=22% Similarity=0.328 Sum_probs=46.8
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|.-++
T Consensus 130 ~~~LSgG~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~ 193 (213)
T cd03235 130 IGELSGGQQQRVLLARALVQDPDLLLLDEPF-AGVDPKTQEDIYELLRELRREGMTILVVTHDLG 193 (213)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3446777777777776778899999999998 789998877766666654433566777776543
No 244
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.75 E-value=2.6e-05 Score=79.06 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=46.4
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|..+
T Consensus 130 ~~~~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~ 193 (232)
T cd03218 130 KASSLSGGERRRVEIARALATNPKFLLLDEPF-AGVDPIAVQDIQKIIKILKDRGIGVLITDHNV 193 (232)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34456778887777777788899999999998 78999876666555554433356677777654
No 245
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.75 E-value=4.4e-05 Score=73.68 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=43.7
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.|.-.|........-++++|.+||.- ..+|.-.... +..++...+.+..+|+.|+.+.
T Consensus 150 LSGGQQQRLcIARalAv~PeVlLmDEPt-SALDPIsT~k-IEeLi~eLk~~yTIviVTHnmq 209 (253)
T COG1117 150 LSGGQQQRLCIARALAVKPEVLLMDEPT-SALDPISTLK-IEELITELKKKYTIVIVTHNMQ 209 (253)
T ss_pred CChhHHHHHHHHHHHhcCCcEEEecCcc-cccCchhHHH-HHHHHHHHHhccEEEEEeCCHH
Confidence 5677777777777777889999999997 6777655444 3333333335899999999884
No 246
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.75 E-value=5.5e-05 Score=77.17 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=46.6
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... .+..+|+.|.-++
T Consensus 142 ~~~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~ 206 (241)
T cd03256 142 ADQLSGGQQQRVAIARALMQQPKLILADEPV-ASLDPASSRQVMDLLKRINREEGITVIVSLHQVD 206 (241)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4446778888877777778899999999998 78998887776666655432 1566777666543
No 247
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=8.4e-05 Score=77.62 Aligned_cols=65 Identities=22% Similarity=0.222 Sum_probs=48.5
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~ 161 (704)
.+.-.+.|+..+..+....+.+.++||+||.- ..+|......+.+.+...... +..+|+.|.-++
T Consensus 137 ~~~~LS~G~~qrv~laral~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~ 202 (279)
T PRK13635 137 EPHRLSGGQKQRVAIAGVLALQPDIIILDEAT-SMLDPRGRREVLETVRQLKEQKGITVLSITHDLD 202 (279)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 34456888888888777788899999999998 799998877766666554432 567777776654
No 248
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.74 E-value=5.7e-05 Score=75.95 Aligned_cols=62 Identities=19% Similarity=0.285 Sum_probs=46.1
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+++.+..... +..+|+.|.-+
T Consensus 131 ~~~LS~G~~qrv~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~ 192 (220)
T cd03263 131 ARTLSGGMKRKLSLAIALIGGPSVLLLDEPT-SGLDPASRRAIWDLILEVRK-GRSIILTTHSM 192 (220)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEECCCC-CCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCH
Confidence 3446778887777777788899999999998 78999887777666666554 55566665543
No 249
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.74 E-value=7.6e-05 Score=74.28 Aligned_cols=143 Identities=17% Similarity=0.121 Sum_probs=80.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhHH-HHHHHHHH---HHHhCC---ccCceeeee--e
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVA-AVSVARRV---AQELGV---RLGEEVGYA--I 85 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~l-a~~~a~rv---a~~~~~---~vg~~vg~~--~ 85 (704)
.+.+|+.+.|.||+||||||++..++.......| .|.+ -.+.... .......+ .+.... .+...+.+. .
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~ 108 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEG-KIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEY 108 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-eEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCCC
Confidence 3568999999999999999999988776554433 3322 1111100 00000110 000000 000000000 0
Q ss_pred ecc---cccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 86 RFE---DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 86 ~~~---~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
..+ ........+.-.+.|...+..+....+.+.+++|+||.- ..+|......+.+.+..... +..+|+.|..++
T Consensus 109 ~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~th~~~ 185 (207)
T cd03369 109 SDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEAT-ASIDYATDALIQKTIREEFT-NSTILTIAHRLR 185 (207)
T ss_pred CHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH
Confidence 000 000012234456778888877777778899999999998 78998877666665555543 677787777654
No 250
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.74 E-value=4.9e-05 Score=80.39 Aligned_cols=64 Identities=25% Similarity=0.294 Sum_probs=47.5
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+...+......+..+|+.|+-+
T Consensus 132 ~~~~LSgG~~qrv~la~al~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~ 195 (303)
T TIGR01288 132 RVALLSGGMKRRLTLARALINDPQLLILDEPT-TGLDPHARHLIWERLRSLLARGKTILLTTHFM 195 (303)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 34456788888888777788899999999998 78999877776666655443356677776654
No 251
>PRK10908 cell division protein FtsE; Provisional
Probab=97.74 E-value=2.9e-05 Score=78.24 Aligned_cols=64 Identities=14% Similarity=0.254 Sum_probs=46.1
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+......+..+|+.|..++
T Consensus 135 ~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (222)
T PRK10908 135 PIQLSGGEQQRVGIARAVVNKPAVLLADEPT-GNLDDALSEGILRLFEEFNRVGVTVLMATHDIG 198 (222)
T ss_pred chhCCHHHHHHHHHHHHHHcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3446777777777777778889999999998 789988766666655554333567777777653
No 252
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.74 E-value=5.1e-05 Score=77.52 Aligned_cols=64 Identities=17% Similarity=0.231 Sum_probs=45.9
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+...... +..+|+.|.-++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~ 207 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPI-ASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD 207 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 4446778887877777788899999999998 789988766665555554321 456777776543
No 253
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.74 E-value=5.8e-05 Score=76.97 Aligned_cols=143 Identities=17% Similarity=0.252 Sum_probs=84.7
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc---chhhH-HHHHHHHHH---HHHhCC----ccCceeeee
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT---QPRRV-AAVSVARRV---AQELGV----RLGEEVGYA 84 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~---~P~r~-la~~~a~rv---a~~~~~----~vg~~vg~~ 84 (704)
.+..|+++.|+|..|+||||++..+-....++.|...+-. ..... ..++.-+++ .+.++. .+.+.+.|.
T Consensus 28 ~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~P 107 (339)
T COG1135 28 EIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP 107 (339)
T ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhh
Confidence 5678999999999999999999988776665544433332 11111 112222221 222222 122222222
Q ss_pred eecccccCc-------------------ccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHH---HHHHHHH
Q 005291 85 IRFEDRTSE-------------------RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI---LLGLVKR 142 (704)
Q Consensus 85 ~~~~~~~~~-------------------~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~---l~~llk~ 142 (704)
......... +.--.=.+.|.-.|.........++++++.||+. ..+|... .+.+++.
T Consensus 108 Leiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaT-SALDP~TT~sIL~LL~~ 186 (339)
T COG1135 108 LELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEAT-SALDPETTQSILELLKD 186 (339)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCcc-ccCChHHHHHHHHHHHH
Confidence 221111000 0001113556666766666778899999999998 6788765 5666666
Q ss_pred HHHHhccCcEEEEEecCCC
Q 005291 143 LVNLRASKLKILITSATLD 161 (704)
Q Consensus 143 l~~~~~~~~kiI~~SATl~ 161 (704)
+-+.. ++.+++.|..|+
T Consensus 187 In~~l--glTIvlITHEm~ 203 (339)
T COG1135 187 INREL--GLTIVLITHEME 203 (339)
T ss_pred HHHHc--CCEEEEEechHH
Confidence 66555 799999999886
No 254
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.73 E-value=8.8e-05 Score=74.75 Aligned_cols=140 Identities=21% Similarity=0.243 Sum_probs=77.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE--------------EEEcchhhH-H-HHHHHHHHH---HHhCCcc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI--------------IGVTQPRRV-A-AVSVARRVA---QELGVRL 77 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~--------------ilv~~P~r~-l-a~~~a~rva---~~~~~~v 77 (704)
+.+|+.+.|.||+||||||++..+........|.. +.++.+... . ..++.+.+. ...+...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~ 102 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPD 102 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCH
Confidence 56899999999999999999998887654433321 111110000 0 001111111 0001000
Q ss_pred Cceeee---eeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEE
Q 005291 78 GEEVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (704)
Q Consensus 78 g~~vg~---~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI 154 (704)
..+-. ....+. ..+..+.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|
T Consensus 103 -~~~~~~l~~~~l~~--~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~L~~~~~~~~tii 178 (223)
T TIGR03740 103 -SRIDEVLNIVDLTN--TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPT-NGLDPIGIQELRELIRSFPEQGITVI 178 (223)
T ss_pred -HHHHHHHHHcCCcH--HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc-cCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 00000 000000 011233346788888877777788899999999998 78999877776666655443345666
Q ss_pred EEecCC
Q 005291 155 ITSATL 160 (704)
Q Consensus 155 ~~SATl 160 (704)
+.|.-+
T Consensus 179 i~sH~~ 184 (223)
T TIGR03740 179 LSSHIL 184 (223)
T ss_pred EEcCCH
Confidence 666543
No 255
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.73 E-value=4.5e-05 Score=77.61 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=48.6
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~ 161 (704)
.+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... .+..+|+.|..++
T Consensus 129 ~~~~LS~G~~qrl~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 194 (236)
T TIGR03864 129 KVRELNGGHRRRVEIARALLHRPALLLLDEPT-VGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD 194 (236)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-cCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 34457888888888777788899999999998 78999887776666655432 2567777777654
No 256
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.72 E-value=4e-05 Score=76.69 Aligned_cols=62 Identities=15% Similarity=0.260 Sum_probs=45.0
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|.-+
T Consensus 135 ~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~ 196 (214)
T cd03292 135 AELSGGEQQRVAIARAIVNSPTILIADEPT-GNLDPDTTWEIMNLLKKINKAGTTVVVATHAK 196 (214)
T ss_pred hhcCHHHHHHHHHHHHHHcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 346778777777777778899999999998 78998877776666655433355666666644
No 257
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.72 E-value=6.1e-05 Score=78.43 Aligned_cols=66 Identities=20% Similarity=0.193 Sum_probs=48.6
Q ss_pred cceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 95 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+++.+......+..+|+.|.-++
T Consensus 132 ~~~~~LS~G~~qrv~laral~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~ 197 (274)
T PRK13644 132 RSPKTLSGGQGQCVALAGILTMEPECLIFDEVT-SMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE 197 (274)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 344557888888888877788899999999998 789988776666666554433566777666544
No 258
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.71 E-value=5.9e-05 Score=79.20 Aligned_cols=72 Identities=14% Similarity=0.212 Sum_probs=51.0
Q ss_pred cceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCChHHHhccc
Q 005291 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (704)
Q Consensus 95 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~~~~~~~~~ 169 (704)
..+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+++.+...... +..+|+.|.-++ .+..+.
T Consensus 141 ~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt-~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~--~~~~~~ 213 (290)
T PRK13634 141 RSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPT-AGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME--DAARYA 213 (290)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhC
Confidence 345557888888888877788999999999998 789998877666655554332 566777766543 344443
No 259
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=9e-05 Score=77.40 Aligned_cols=145 Identities=22% Similarity=0.285 Sum_probs=82.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhH-HHHHHHHHHH---H-----HhCCccCceeeeee-
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARRVA---Q-----ELGVRLGEEVGYAI- 85 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~-la~~~a~rva---~-----~~~~~vg~~vg~~~- 85 (704)
.+..|+.+.|+||+||||||++..+........|...+--.+... ......++++ + ..+..+...+.+..
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~ 108 (279)
T PRK13650 29 HVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLE 108 (279)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHH
Confidence 356899999999999999999998887765544332221111100 0000111110 0 00001111110000
Q ss_pred ----ec-------c------c-ccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh
Q 005291 86 ----RF-------E------D-RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (704)
Q Consensus 86 ----~~-------~------~-~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~ 147 (704)
.. + . ....+..+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+++.+....
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt-~~LD~~~~~~l~~~l~~l~ 187 (279)
T PRK13650 109 NKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEAT-SMLDPEGRLELIKTIKGIR 187 (279)
T ss_pred hCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHH
Confidence 00 0 0 00012233456788888888777788899999999998 7899987777666665554
Q ss_pred cc-CcEEEEEecCCC
Q 005291 148 AS-KLKILITSATLD 161 (704)
Q Consensus 148 ~~-~~kiI~~SATl~ 161 (704)
.. +..+|+.|.-++
T Consensus 188 ~~~g~tilivtH~~~ 202 (279)
T PRK13650 188 DDYQMTVISITHDLD 202 (279)
T ss_pred HhcCCEEEEEecCHH
Confidence 32 567888877664
No 260
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.70 E-value=4.8e-05 Score=77.63 Aligned_cols=63 Identities=14% Similarity=0.278 Sum_probs=45.5
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.-.+.|+..+..+....+.+.+++|+||+. ..+|......+.+.+......+..+|+.|.-++
T Consensus 135 ~~LS~G~~qrv~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 197 (240)
T PRK09493 135 SELSGGQQQRVAIARALAVKPKLMLFDEPT-SALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG 197 (240)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 345777777777777778899999999998 789988777766655554433566777776543
No 261
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=0.00018 Score=73.03 Aligned_cols=63 Identities=22% Similarity=0.199 Sum_probs=47.7
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
+.-.+.|...+..+....+.+.+++|+||+- ..+|.+....+.+.+..... +..+|+.|..++
T Consensus 136 ~~~LS~G~~qrv~la~al~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~ 198 (234)
T cd03251 136 GVKLSGGQRQRIAIARALLKDPPILILDEAT-SALDTESERLVQAALERLMK-NRTTFVIAHRLS 198 (234)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH
Confidence 4456788888877777788899999999997 78999887777666665544 667777776653
No 262
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.70 E-value=0.00018 Score=72.69 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=47.9
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+..... +..+|+.|..++
T Consensus 148 ~~~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~ 210 (226)
T cd03248 148 GSQLSGGQKQRVAIARALIRNPQVLILDEAT-SALDAESEQQVQQALYDWPE-RRTVLVIAHRLS 210 (226)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH
Confidence 4456788888888777788999999999998 78999887776666665544 567777776653
No 263
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=6.5e-05 Score=76.04 Aligned_cols=63 Identities=21% Similarity=0.181 Sum_probs=47.5
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+...+..... +..+|+.|..++
T Consensus 137 ~~~LS~G~~~rv~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~ 199 (229)
T cd03254 137 GGNLSQGERQLLAIARAMLRDPKILILDEAT-SNIDTETEKLIQEALEKLMK-GRTSIIIAHRLS 199 (229)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH
Confidence 3457788888888777788999999999998 78998877766666655543 667777776553
No 264
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=7.4e-05 Score=75.12 Aligned_cols=138 Identities=25% Similarity=0.313 Sum_probs=78.8
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE-------------EEEcchhhHH-H-HHHHHHHH---HHhCCc-
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-------------IGVTQPRRVA-A-VSVARRVA---QELGVR- 76 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~-------------ilv~~P~r~l-a-~~~a~rva---~~~~~~- 76 (704)
.+.+|+++.|+||+||||||++..+........|.. +.++.....+ . ..+.+.+. ...+..
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 105 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPK 105 (220)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCH
Confidence 456899999999999999999998877654433221 1111110000 0 01111111 000000
Q ss_pred ---------cCceeeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh
Q 005291 77 ---------LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (704)
Q Consensus 77 ---------vg~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~ 147 (704)
.-..+| .+. .....+.-.+.|+..+..+....+.+.+++|+||+. ..+|......+.+.+....
T Consensus 106 ~~~~~~~~~~l~~~~----l~~--~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt-~~LD~~~~~~~~~~l~~~~ 178 (220)
T cd03293 106 AEARERAEELLELVG----LSG--FENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPF-SALDALTREQLQEELLDIW 178 (220)
T ss_pred HHHHHHHHHHHHHcC----Chh--hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCC-CCCCHHHHHHHHHHHHHHH
Confidence 000001 000 012233447888888888777788899999999998 7899987777666665543
Q ss_pred c-cCcEEEEEecCC
Q 005291 148 A-SKLKILITSATL 160 (704)
Q Consensus 148 ~-~~~kiI~~SATl 160 (704)
. .+..+|+.|.-+
T Consensus 179 ~~~~~tiii~sH~~ 192 (220)
T cd03293 179 RETGKTVLLVTHDI 192 (220)
T ss_pred HHcCCEEEEEecCH
Confidence 2 256677776654
No 265
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.70 E-value=0.00011 Score=73.54 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=46.8
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||+. ..+|......+.+.+...... +..+|+.|..+
T Consensus 126 ~~~LS~G~~qrl~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~ 189 (213)
T TIGR01277 126 PEQLSGGQRQRVALARCLVRPNPILLLDEPF-SALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189 (213)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3446788888887777778899999999998 789998877766666654432 56677776654
No 266
>PRK06526 transposase; Provisional
Probab=97.69 E-value=0.00023 Score=72.96 Aligned_cols=118 Identities=21% Similarity=0.275 Sum_probs=61.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCccc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~ 95 (704)
.+..++++++.||+|+|||+++..+...... .+..+++.... ++..++....
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a~~-~g~~v~f~t~~-----~l~~~l~~~~---------------------- 145 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRACQ-AGHRVLFATAA-----QWVARLAAAH---------------------- 145 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHHHH-CCCchhhhhHH-----HHHHHHHHHH----------------------
Confidence 3556789999999999999887766554432 34455443221 2222221110
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhcccCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSN 171 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~~~~ 171 (704)
..+.+.+.+. .+.++++|||||+|....+... ..++-.++..+.....+|+.|.. +.....+.|++
T Consensus 146 -----~~~~~~~~l~---~l~~~dlLIIDD~g~~~~~~~~-~~~L~~li~~r~~~~s~IitSn~-~~~~w~~~~~d 211 (254)
T PRK06526 146 -----HAGRLQAELV---KLGRYPLLIVDEVGYIPFEPEA-ANLFFQLVSSRYERASLIVTSNK-PFGRWGEVFGD 211 (254)
T ss_pred -----hcCcHHHHHH---HhccCCEEEEcccccCCCCHHH-HHHHHHHHHHHHhcCCEEEEcCC-CHHHHHHHcCC
Confidence 0001111111 2456899999999943333333 33444444443324445555544 44555555554
No 267
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=6.9e-05 Score=78.62 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=47.8
Q ss_pred cceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 95 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
..+.-.+.|+..+..+....+.+.+++|+||+- ..+|.+....+++.+......+..+|+.|.-+
T Consensus 140 ~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt-~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~ 204 (288)
T PRK13643 140 KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPT-AGLDPKARIEMMQLFESIHQSGQTVVLVTHLM 204 (288)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 344557888888888777788899999999998 78998877766665554433356777776654
No 268
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=9.7e-05 Score=77.28 Aligned_cols=145 Identities=20% Similarity=0.231 Sum_probs=82.6
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCC--cEEEE-cchhhH-HHHHHHHHHH--------HHhCCccCceeee
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKS--GIIGV-TQPRRV-AAVSVARRVA--------QELGVRLGEEVGY 83 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~--~~ilv-~~P~r~-la~~~a~rva--------~~~~~~vg~~vg~ 83 (704)
.+..|+++.|+||+||||||++..++.......+ +.|.+ -.+... .......+++ ......+.+.+.+
T Consensus 29 ~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~ 108 (282)
T PRK13640 29 SIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAF 108 (282)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHh
Confidence 3568999999999999999999988877655432 44432 111100 0000000000 0000111111110
Q ss_pred eeec------------c------c-ccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHH
Q 005291 84 AIRF------------E------D-RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (704)
Q Consensus 84 ~~~~------------~------~-~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~ 144 (704)
.... . . ....+..+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+...+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt-~gLD~~~~~~l~~~l~ 187 (282)
T PRK13640 109 GLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDEST-SMLDPAGKEQILKLIR 187 (282)
T ss_pred hHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHH
Confidence 0000 0 0 00012344557888888888877788999999999998 7899987776666555
Q ss_pred HHhcc-CcEEEEEecCCC
Q 005291 145 NLRAS-KLKILITSATLD 161 (704)
Q Consensus 145 ~~~~~-~~kiI~~SATl~ 161 (704)
..... +..+|+.|.-++
T Consensus 188 ~l~~~~g~tvli~tH~~~ 205 (282)
T PRK13640 188 KLKKKNNLTVISITHDID 205 (282)
T ss_pred HHHHhcCCEEEEEecCHH
Confidence 54332 567788777654
No 269
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.68 E-value=0.0085 Score=72.61 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=81.2
Q ss_pred CCchHHHHHHHHHh-ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceee
Q 005291 4 LPILQYEETIVETV-EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (704)
Q Consensus 4 LPi~~~~~~il~~l-~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg 82 (704)
..+..-|.+.+..+ ..+++++|+|+.|+||||.+..+.... ...+..|+.+.|+-.++..+ .+..|...
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~-e~~G~~V~g~ApTgkAA~~L----~e~~Gi~a----- 449 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAW-EAAGYRVVGGALAGKAAEGL----EKEAGIQS----- 449 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHH-HHcCCeEEEEcCcHHHHHHH----HHhhCCCe-----
Confidence 34667788888876 457899999999999999887765432 22466888889987776554 33333321
Q ss_pred eeeecccccCcccceEEcchHHH-HHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecC
Q 005291 83 YAIRFEDRTSERTLIKYLTDGVL-LREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (704)
Q Consensus 83 ~~~~~~~~~~~~~~I~~~T~g~L-l~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SAT 159 (704)
.|-..+ ++.-.....+..-++|||||+. ++++..+..+++.+.. .+.++|++.=+
T Consensus 450 -----------------~TIas~ll~~~~~~~~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~~~---~garvVLVGD~ 505 (1102)
T PRK13826 450 -----------------RTLSSWELRWNQGRDQLDNKTVFVLDEAG--MVASRQMALFVEAVTR---AGAKLVLVGDP 505 (1102)
T ss_pred -----------------eeHHHHHhhhccCccCCCCCcEEEEECcc--cCCHHHHHHHHHHHHh---cCCEEEEECCH
Confidence 111111 1111122346667899999997 7888888777665532 26788887643
No 270
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.68 E-value=8.1e-05 Score=79.15 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=48.2
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
..-.+.|+..+..+....+.+.+++|+||+- ..+|......++..+......+..+|+.|..++
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPt-sgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~ 237 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPT-AGLDPKGEHEMMQLILDAKANNKTVFVITHTME 237 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 4446788888888777788999999999998 789998877766666554333667787777654
No 271
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.68 E-value=0.00046 Score=71.41 Aligned_cols=142 Identities=15% Similarity=0.129 Sum_probs=79.8
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEE-----EEc-chhhHH-HHHHHHHHHH---HhCCccCce---ee
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII-----GVT-QPRRVA-AVSVARRVAQ---ELGVRLGEE---VG 82 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~i-----lv~-~P~r~l-a~~~a~rva~---~~~~~vg~~---vg 82 (704)
.+.+|+.+.|+||+||||||++..++.......|... .+. +..... ...+.+.+.. ..+...... +.
T Consensus 46 ~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~ 125 (264)
T PRK13546 46 KAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTP 125 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3568999999999999999999988887655443211 111 110000 0011111110 001100000 00
Q ss_pred e---eeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecC
Q 005291 83 Y---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (704)
Q Consensus 83 ~---~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SAT 159 (704)
. ....+. .....+.-.+.|+..+..+....+.+..++|+||+- ..+|......++..+......+..+|+.|.-
T Consensus 126 ~~l~~~~l~~--~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt-~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~ 202 (264)
T PRK13546 126 KIIEFSELGE--FIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEAL-SVGDQTFAQKCLDKIYEFKEQNKTIFFVSHN 202 (264)
T ss_pred HHHHHcCCch--hhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCcc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 0 000000 012344557889888888777788899999999998 6888876666555554443335677777765
Q ss_pred C
Q 005291 160 L 160 (704)
Q Consensus 160 l 160 (704)
+
T Consensus 203 ~ 203 (264)
T PRK13546 203 L 203 (264)
T ss_pred H
Confidence 4
No 272
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.68 E-value=0.00011 Score=74.73 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=46.3
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|.-+
T Consensus 141 ~~~LSgG~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~ 203 (236)
T cd03219 141 AGELSYGQQRRLEIARALATDPKLLLLDEPA-AGLNPEETEELAELIRELRERGITVLLVEHDM 203 (236)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 3346778887777777778899999999998 78999887776666655443356677776654
No 273
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.66 E-value=0.00011 Score=73.45 Aligned_cols=143 Identities=13% Similarity=0.117 Sum_probs=75.9
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcc---hhh--------HHHHHHHHHHHHHhCCccCceeeee
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ---PRR--------VAAVSVARRVAQELGVRLGEEVGYA 84 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~---P~r--------~la~~~a~rva~~~~~~vg~~vg~~ 84 (704)
.+.+|+++.|.||+||||||++..++.......|....+-. +.. ..+.+....+....+..........
T Consensus 9 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~ 88 (213)
T PRK15177 9 VMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFC 88 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence 36789999999999999999999888766554443321110 000 0001111111111111000000000
Q ss_pred eecccc-cCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 85 IRFEDR-TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 85 ~~~~~~-~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
...... ...+..+.-.+.|+..+..+....+.+.+++++||+- ..+|......+...+..... +..+|+.|.-+
T Consensus 89 ~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~-~~lD~~~~~~~~~~l~~~~~-~~~ii~vsH~~ 163 (213)
T PRK15177 89 YQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKL-YTGDNATQLRMQAALACQLQ-QKGLIVLTHNP 163 (213)
T ss_pred HHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCC-ccCCHHHHHHHHHHHHHHhh-CCcEEEEECCH
Confidence 000000 0012345557888888887777788899999999976 46677665555554544333 33456655443
No 274
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.66 E-value=0.00039 Score=70.14 Aligned_cols=136 Identities=18% Similarity=0.143 Sum_probs=78.4
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-------------cchhhHHHHHHHHHHHHHhCCcc-----
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-------------TQPRRVAAVSVARRVAQELGVRL----- 77 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-------------~~P~r~la~~~a~rva~~~~~~v----- 77 (704)
.+..|+.+.|.||+||||||++..+........| .|.+ ..|... +.+.........+...
T Consensus 44 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~~t-v~enl~~~~~~~~~~~~~~~~ 121 (224)
T cd03220 44 EVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSG-TVTVRGRVSSLLGLGGGFNPELT-GRENIYLNGRLLGLSRKEIDE 121 (224)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEchhhcccccCCCCCc-HHHHHHHHHHHcCCCHHHHHH
Confidence 3568999999999999999999988876554333 2221 112110 0111000000001000
Q ss_pred -----CceeeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcE
Q 005291 78 -----GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (704)
Q Consensus 78 -----g~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~k 152 (704)
...+| .+. ..+..+.-.+.|...+..+....+.+.+++|+||.- ..+|......+.+.+......+..
T Consensus 122 ~~~~~l~~~~----l~~--~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~-~gLD~~~~~~~~~~l~~~~~~~~t 194 (224)
T cd03220 122 KIDEIIEFSE----LGD--FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVL-AVGDAAFQEKCQRRLRELLKQGKT 194 (224)
T ss_pred HHHHHHHHcC----Chh--hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCE
Confidence 00001 000 012334457888888877777788899999999998 789988766666655554433456
Q ss_pred EEEEecCC
Q 005291 153 ILITSATL 160 (704)
Q Consensus 153 iI~~SATl 160 (704)
+|+.|.-+
T Consensus 195 iii~sH~~ 202 (224)
T cd03220 195 VILVSHDP 202 (224)
T ss_pred EEEEeCCH
Confidence 77766654
No 275
>PRK04296 thymidine kinase; Provisional
Probab=97.66 E-value=0.0005 Score=67.42 Aligned_cols=111 Identities=20% Similarity=0.232 Sum_probs=60.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchh---hHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR---RVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~---r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~ 96 (704)
|.+.+++||+|+||||.+..++..... .+.++++..|. +..... +...+|..+. .
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~-~g~~v~i~k~~~d~~~~~~~----i~~~lg~~~~-----------------~ 59 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE-RGMKVLVFKPAIDDRYGEGK----VVSRIGLSRE-----------------A 59 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH-cCCeEEEEeccccccccCCc----EecCCCCccc-----------------c
Confidence 567899999999999999888876643 35677776552 211111 1111111100 0
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SAT 159 (704)
+.+.....+.+.+.. .-.++++|||||+| .++.+.+..+++.+ .+.+..+|+..-.
T Consensus 60 ~~~~~~~~~~~~~~~--~~~~~dvviIDEaq--~l~~~~v~~l~~~l---~~~g~~vi~tgl~ 115 (190)
T PRK04296 60 IPVSSDTDIFELIEE--EGEKIDCVLIDEAQ--FLDKEQVVQLAEVL---DDLGIPVICYGLD 115 (190)
T ss_pred eEeCChHHHHHHHHh--hCCCCCEEEEEccc--cCCHHHHHHHHHHH---HHcCCeEEEEecC
Confidence 112333444444433 33578999999998 34444344433332 3335556655433
No 276
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.66 E-value=5.3e-05 Score=87.90 Aligned_cols=60 Identities=23% Similarity=0.309 Sum_probs=49.4
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.|...|..+....+++.+++|+||+- ..+|.+.-..+.+.+.+..+ +..+|+.|+-+.
T Consensus 486 LSGGQrQRialARAll~~~~IliLDE~T-SaLD~~te~~i~~~l~~~~~-~~TvIiItHrl~ 545 (588)
T PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPT-ASLDAHSEQLVMQALNAASR-RQTTLMVTHQLE 545 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHhC-CCEEEEEecChH
Confidence 6788888888888889999999999998 78999887777776666554 778888887763
No 277
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.65 E-value=6.4e-05 Score=86.08 Aligned_cols=143 Identities=24% Similarity=0.239 Sum_probs=84.8
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHH-HHHHHHH---HHHh---CCccCceeeeee---
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRV---AQEL---GVRLGEEVGYAI--- 85 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la-~~~a~rv---a~~~---~~~vg~~vg~~~--- 85 (704)
.+.+|+.+.|+||+||||||++..++.......|...+--.|.+..- .+..+.+ .++. ...+.+.+.+..
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~ 423 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDA 423 (529)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCC
Confidence 45689999999999999999999888876655443333333322211 1111111 0000 000000000000
Q ss_pred e------------ccc---ccC--cccc----eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHH
Q 005291 86 R------------FED---RTS--ERTL----IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (704)
Q Consensus 86 ~------------~~~---~~~--~~~~----I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~ 144 (704)
. ..+ ... -++. -.-.+.|...|.......+++.+++|+||+- ..+|.+....+.+.+.
T Consensus 424 ~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~t-s~lD~~~~~~i~~~l~ 502 (529)
T TIGR02857 424 SDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPT-AHLDAETEALVTEALR 502 (529)
T ss_pred CHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcc-cccCHHHHHHHHHHHH
Confidence 0 000 000 0111 1225778888888888889999999999998 7899998888777777
Q ss_pred HHhccCcEEEEEecCC
Q 005291 145 NLRASKLKILITSATL 160 (704)
Q Consensus 145 ~~~~~~~kiI~~SATl 160 (704)
...+ +..+|+.|+-+
T Consensus 503 ~~~~-~~t~i~itH~~ 517 (529)
T TIGR02857 503 ALAQ-GRTVLLVTHRL 517 (529)
T ss_pred HhcC-CCEEEEEecCH
Confidence 6654 77888888765
No 278
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.65 E-value=5.4e-05 Score=76.67 Aligned_cols=64 Identities=20% Similarity=0.303 Sum_probs=45.9
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+...... +..+|+.|..++
T Consensus 129 ~~~LS~G~~qrv~la~al~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 193 (230)
T TIGR03410 129 GGDLSGGQQQQLAIARALVTRPKLLLLDEPT-EGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD 193 (230)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH
Confidence 3345677777777666678899999999998 799998877766666655432 466777766543
No 279
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.65 E-value=4e-05 Score=82.55 Aligned_cols=62 Identities=24% Similarity=0.294 Sum_probs=47.9
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~ 161 (704)
-.+.|+..|..+......+.+++++||+. ..+|......+...+..... .+..+|+.|..++
T Consensus 129 ~LSGGq~QRV~lARAL~~~p~iLLlDEP~-saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ 191 (363)
T TIGR01186 129 ELSGGMQQRVGLARALAAEPDILLMDEAF-SALDPLIRDSMQDELKKLQATLQKTIVFITHDLD 191 (363)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 46788888888877788999999999998 78999887776666665433 2567888877765
No 280
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.00064 Score=73.55 Aligned_cols=121 Identities=21% Similarity=0.231 Sum_probs=74.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEE--EEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccce
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGII--GVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~i--lv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I 97 (704)
+.+++++||||+||||++..+........+.+| +-.-+.|..+..+.++.++.++..+. .
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~-----~------------- 284 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY-----P------------- 284 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCee-----e-------------
Confidence 467899999999999998888765432334344 33457788888888888777765420 0
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCC-CCHHHHHHHHHHHHHHh---ccCcEEEEEecCCChHHH
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERS-LNTDILLGLVKRLVNLR---ASKLKILITSATLDGEKV 165 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~-l~~d~l~~llk~l~~~~---~~~~kiI~~SATl~~~~~ 165 (704)
......+...+. -.++++||||=+- ++ -+.+.+.. +..+.... .+.-.++++|||...+.+
T Consensus 285 -~~~~~~l~~~l~----~~~~D~VLIDTaG-r~~rd~~~l~e-L~~~~~~~~~~~~~e~~LVLsAt~~~~~~ 349 (432)
T PRK12724 285 -VKDIKKFKETLA----RDGSELILIDTAG-YSHRNLEQLER-MQSFYSCFGEKDSVENLLVLSSTSSYHHT 349 (432)
T ss_pred -hHHHHHHHHHHH----hCCCCEEEEeCCC-CCccCHHHHHH-HHHHHHhhcCCCCCeEEEEEeCCCCHHHH
Confidence 001122333332 2578999999876 44 33333333 44444432 123578899999976543
No 281
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.65 E-value=0.00022 Score=84.35 Aligned_cols=138 Identities=20% Similarity=0.231 Sum_probs=84.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHH-------------------HHHHHHHH------
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-------------------VSVARRVA------ 70 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la-------------------~~~a~rva------ 70 (704)
.+..|+.+.|+|++||||||++..++.......|...+--.|.+... .++.+.+.
T Consensus 487 ~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~ 566 (694)
T TIGR03375 487 TIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYA 566 (694)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCC
Confidence 35689999999999999999998888766554443222222222111 11111110
Q ss_pred ---------HHhCCc--c-CceeeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHH
Q 005291 71 ---------QELGVR--L-GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLG 138 (704)
Q Consensus 71 ---------~~~~~~--v-g~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~ 138 (704)
+..+.. + ...-||.....+ .-.-.+.|...|..+....+++.+++|+||+- ..+|...-..
T Consensus 567 ~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e------~G~~LSgGQrQRlalARall~~p~iliLDE~T-s~LD~~te~~ 639 (694)
T TIGR03375 567 DDEEILRAAELAGVTEFVRRHPDGLDMQIGE------RGRSLSGGQRQAVALARALLRDPPILLLDEPT-SAMDNRSEER 639 (694)
T ss_pred CHHHHHHHHHHcChHHHHHhCcccccceecC------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHH
Confidence 000000 0 000111111110 01226788888888888889999999999998 7899988877
Q ss_pred HHHHHHHHhccCcEEEEEecCCC
Q 005291 139 LVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 139 llk~l~~~~~~~~kiI~~SATl~ 161 (704)
+.+.+.+..+ +..+|+.|+-++
T Consensus 640 i~~~l~~~~~-~~T~iiItHrl~ 661 (694)
T TIGR03375 640 FKDRLKRWLA-GKTLVLVTHRTS 661 (694)
T ss_pred HHHHHHHHhC-CCEEEEEecCHH
Confidence 7777766665 778888887654
No 282
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.65 E-value=3.6e-05 Score=76.98 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=47.1
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|.-+
T Consensus 127 ~~~~LS~G~~qr~~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~ 191 (213)
T cd03301 127 KPKQLSGGQRQRVALGRAIVREPKVFLMDEPL-SNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ 191 (213)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 34457888888877777778899999999998 799998877766666554432 56677776654
No 283
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.65 E-value=0.0005 Score=69.52 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=45.8
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|.+....+.+.+...... +..+|+.|.-++
T Consensus 144 ~~~LS~Ge~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 208 (228)
T PRK10584 144 PAQLSGGEQQRVALARAFNGRPDVLFADEPT-GNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ 208 (228)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 3346778777777777778899999999998 789988777666656554322 456777766543
No 284
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.64 E-value=0.00048 Score=69.22 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=46.5
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... .+..+|+.|.-++
T Consensus 139 ~~~LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~ 203 (221)
T TIGR02211 139 PSELSGGERQRVAIARALVNQPSLVLADEPT-GNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE 203 (221)
T ss_pred hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3346778777777777788899999999998 78998877776666655433 1566777776653
No 285
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=0.00011 Score=73.39 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=46.2
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... .+..+|+.|.-+
T Consensus 128 ~~~LSgG~~qrl~la~al~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 191 (213)
T cd03259 128 PHELSGGQQQRVALARALAREPSLLLLDEPL-SALDAKLREELREELKELQRELGITTIYVTHDQ 191 (213)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 3446788888888777788899999999998 78998877776666655433 145667666654
No 286
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.64 E-value=0.0001 Score=76.75 Aligned_cols=64 Identities=20% Similarity=0.161 Sum_probs=47.7
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+++.+......+..+|+.|.-++
T Consensus 136 ~~~LSgG~~qrv~laraL~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~ 199 (274)
T PRK13647 136 PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPM-AYLDPRGQETLMEILDRLHNQGKTVIVATHDVD 199 (274)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3446788888888777788999999999998 789988777766666555433567777776654
No 287
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.63 E-value=0.00021 Score=72.70 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=46.8
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+.... .+..+|+.|.-++
T Consensus 137 ~~~LS~G~~qrv~la~al~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~ 199 (238)
T cd03249 137 GSQLSGGQKQRIAIARALLRNPKILLLDEAT-SALDAESEKLVQEALDRAM-KGRTTIVIAHRLS 199 (238)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH
Confidence 3446788888877777788899999999998 7899888777666665554 3666777766543
No 288
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=0.00014 Score=72.66 Aligned_cols=63 Identities=21% Similarity=0.306 Sum_probs=45.9
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+...... +..+|+.|..+
T Consensus 126 ~~~LS~G~~qrv~ia~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 189 (211)
T cd03298 126 PGELSGGERQRVALARVLVRDKPVLLLDEPF-AALDPALRAEMLDLVLDLHAETKMTVLMVTHQP 189 (211)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 3446778877777777778899999999998 789988877766666554321 46677766654
No 289
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=8.6e-05 Score=76.49 Aligned_cols=144 Identities=21% Similarity=0.256 Sum_probs=80.8
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhHH-HHHHHHHH---HHHhCC----ccCceeeee--
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVA-AVSVARRV---AQELGV----RLGEEVGYA-- 84 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~l-a~~~a~rv---a~~~~~----~vg~~vg~~-- 84 (704)
.+..|+.+.|+|++||||||++..+........| .|.+ -.+.... .....+.+ .+.... .+.+.+.+.
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~ 102 (255)
T PRK11231 24 SLPTGKITALIGPNGCGKSTLLKCFARLLTPQSG-TVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRS 102 (255)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCc-EEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccc
Confidence 3568999999999999999999988876554433 3332 2221100 00111111 111000 000000000
Q ss_pred -------e-ecc--cc-----------cCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHH
Q 005291 85 -------I-RFE--DR-----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (704)
Q Consensus 85 -------~-~~~--~~-----------~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l 143 (704)
. ... .. ...+..+.-.+.|+..+..+....+.+.+++|+||+- .++|......+...+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l 181 (255)
T PRK11231 103 PWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPT-TYLDINHQVELMRLM 181 (255)
T ss_pred hhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHH
Confidence 0 000 00 0012344456788888887777788899999999998 789988776666555
Q ss_pred HHHhccCcEEEEEecCCC
Q 005291 144 VNLRASKLKILITSATLD 161 (704)
Q Consensus 144 ~~~~~~~~kiI~~SATl~ 161 (704)
......+..+|+.|.-++
T Consensus 182 ~~l~~~~~tiii~tH~~~ 199 (255)
T PRK11231 182 RELNTQGKTVVTVLHDLN 199 (255)
T ss_pred HHHHHCCCEEEEEECCHH
Confidence 554333566777776543
No 290
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.63 E-value=0.00076 Score=69.50 Aligned_cols=124 Identities=16% Similarity=0.246 Sum_probs=69.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEE--EEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccce
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGII--GVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~i--lv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I 97 (704)
++.++++||+|+||||++..+...... .+..+ +.+-+.|..+.+..+..++.++..+ .
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~-~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~--------~----------- 134 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV--------I----------- 134 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHHhhhcCceE--------E-----------
Confidence 479999999999999988766655432 22333 2334556555444444444333221 0
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCC-CHHHHHHHHHHHHHHhccCcEEEEEecCCChHHH
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSL-NTDILLGLVKRLVNLRASKLKILITSATLDGEKV 165 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l-~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~ 165 (704)
...++..+.+.+..-....++++||||-+= |+. +...+.. +..+.....++..++++|||...+..
T Consensus 135 ~~~~~~~l~~~l~~l~~~~~~D~ViIDt~G-r~~~~~~~l~e-l~~~~~~~~~~~~~LVl~a~~~~~d~ 201 (270)
T PRK06731 135 AVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEE-MIETMGQVEPDYICLTLSASMKSKDM 201 (270)
T ss_pred ecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCcCCHHHHHH-HHHHHhhhCCCeEEEEEcCccCHHHH
Confidence 001333333333211123468999999997 443 4444554 44444433336678889999865443
No 291
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.63 E-value=9.4e-05 Score=74.34 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=47.1
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... +..+|+.|.-++
T Consensus 139 ~~LSgG~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~ 200 (220)
T cd03245 139 RGLSGGQRQAVALARALLNDPPILLLDEPT-SAMDMNSEERLKERLRQLLG-DKTLIIITHRPS 200 (220)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH
Confidence 356788888877777778889999999998 78999887777666666554 456677676654
No 292
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=0.00012 Score=76.65 Aligned_cols=65 Identities=17% Similarity=0.183 Sum_probs=48.6
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~ 161 (704)
.+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+..... .+..+|+.|..++
T Consensus 141 ~~~~LS~G~~qrv~laral~~~p~llllDEPt-~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~ 206 (280)
T PRK13633 141 APHLLSGGQKQRVAIAGILAMRPECIIFDEPT-AMLDPSGRREVVNTIKELNKKYGITIILITHYME 206 (280)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence 44456788888887777788899999999998 78999887776665555432 2567888777665
No 293
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.63 E-value=0.00017 Score=72.87 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=46.2
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... +..+|+.|.-+
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~ 200 (227)
T cd03260 140 LGLSGGQQQRLCLARALANEPEVLLLDEPT-SALDPISTAKIEELIAELKK-EYTIVIVTHNM 200 (227)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhh-CcEEEEEeccH
Confidence 456788888887777788899999999998 78999887777776666655 45566666544
No 294
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00034 Score=77.39 Aligned_cols=142 Identities=22% Similarity=0.274 Sum_probs=84.9
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHH-HHHHHHhCCc---cCceeeeeeecc---
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVA-RRVAQELGVR---LGEEVGYAIRFE--- 88 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a-~rva~~~~~~---vg~~vg~~~~~~--- 88 (704)
.+..|+.+.++|++||||||++..++.......|...+--+|.+.+..+.- +.++ ..+-. ...++..++.+-
T Consensus 343 t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~-~v~Q~p~lf~gTireNi~l~~~~ 421 (559)
T COG4988 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS-WVSQNPYLFAGTIRENILLARPD 421 (559)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee-eeCCCCccccccHHHHhhccCCc
Confidence 567899999999999999999999988877654444443444444332211 1110 00000 000000000000
Q ss_pred -------------------cc-cCcccceEE----cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHH
Q 005291 89 -------------------DR-TSERTLIKY----LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (704)
Q Consensus 89 -------------------~~-~~~~~~I~~----~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~ 144 (704)
.. ..-++.|-= .+.|.-.|..+....+++.+++++||+. -++|.+.-..++..+.
T Consensus 422 ~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpT-A~LD~etE~~i~~~l~ 500 (559)
T COG4988 422 ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPT-AHLDAETEQIILQALQ 500 (559)
T ss_pred CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCc-cCCCHhHHHHHHHHHH
Confidence 00 000111111 5788999999998999999999999987 6788877666666666
Q ss_pred HHhccCcEEEEEecCC
Q 005291 145 NLRASKLKILITSATL 160 (704)
Q Consensus 145 ~~~~~~~kiI~~SATl 160 (704)
+... +..+++.|+-+
T Consensus 501 ~l~~-~ktvl~itHrl 515 (559)
T COG4988 501 ELAK-QKTVLVITHRL 515 (559)
T ss_pred HHHh-CCeEEEEEcCh
Confidence 6665 66666666654
No 295
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.62 E-value=5e-05 Score=77.05 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=47.0
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||+. ..+|.+....+.+.+...... +..+|+.|.-+
T Consensus 128 ~~~lS~G~~qrl~laral~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~ 191 (232)
T cd03300 128 PSQLSGGQQQRVAIARALVNEPKVLLLDEPL-GALDLKLRKDMQLELKRLQKELGITFVFVTHDQ 191 (232)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3456788888877777788899999999999 799998877766666554332 56777777654
No 296
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00043 Score=80.27 Aligned_cols=125 Identities=19% Similarity=0.253 Sum_probs=81.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCC-cEE-EEc-chhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCccc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKS-GII-GVT-QPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~-~~i-lv~-~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~ 95 (704)
.++++.++||||+||||.+..+........+ .+| ++. -+.|+.+.++.+.+++.++..+. +
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~--~-------------- 247 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH--A-------------- 247 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc--c--------------
Confidence 4679999999999999888777765432333 244 333 34577777777777777765431 1
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHh
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVS 166 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~ 166 (704)
+.++..+...+. .+.++++|+||=+= |+....-+...+..+.....+.-.++++|||...+.+.
T Consensus 248 ---~~~~~~l~~al~---~~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 248 ---VKDAADLRFALA---ALGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred ---cCCHHHHHHHHH---HhcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 124455544443 35678999999998 55544445555666654444467889999998765544
No 297
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.62 E-value=3.1e-05 Score=81.51 Aligned_cols=142 Identities=19% Similarity=0.218 Sum_probs=75.3
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE------cchhhHHHHHHHHHHHHHhCCccCceeeeeeeccc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV------TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED 89 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv------~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~ 89 (704)
.+.+|+++++.||+||||||++..+......+.|...+- +.|.+--.--+.+..+-.-...|.+.++|..+...
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~ 104 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG 104 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC
Confidence 467899999999999999999999988776554332110 11110000000000000001111111111111100
Q ss_pred cc-------------------CcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-c
Q 005291 90 RT-------------------SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-S 149 (704)
Q Consensus 90 ~~-------------------~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~ 149 (704)
.. --+.+..=.+.|.-.|..+......+++++.+||.= ..+|..+...+-..+.+... -
T Consensus 105 ~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPl-SnLDa~lR~~mr~ei~~lh~~l 183 (338)
T COG3839 105 VPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPL-SNLDAKLRVLMRSEIKKLHERL 183 (338)
T ss_pred CchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCch-hHhhHHHHHHHHHHHHHHHHhc
Confidence 00 001122235777888888888899999999999996 56777765555444444332 1
Q ss_pred CcEEEEEec
Q 005291 150 KLKILITSA 158 (704)
Q Consensus 150 ~~kiI~~SA 158 (704)
+..+|..|.
T Consensus 184 ~~T~IYVTH 192 (338)
T COG3839 184 GTTTIYVTH 192 (338)
T ss_pred CCcEEEEcC
Confidence 344555544
No 298
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.62 E-value=7.3e-05 Score=81.62 Aligned_cols=144 Identities=22% Similarity=0.262 Sum_probs=80.2
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhH-HHHHHHHHH---HHHhC----CccCceee-----e
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV-AAVSVARRV---AQELG----VRLGEEVG-----Y 83 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~-la~~~a~rv---a~~~~----~~vg~~vg-----~ 83 (704)
+.+|+.+.+.||+||||||++..+........|...+.-.+... ...+.++++ .+... ..+.+.+. |
T Consensus 26 i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~ 105 (402)
T PRK09536 26 VREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPH 105 (402)
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchh
Confidence 56899999999999999999998887665543332222212110 011111111 11100 01100000 0
Q ss_pred eeecc--c-----c-----------cCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHH
Q 005291 84 AIRFE--D-----R-----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (704)
Q Consensus 84 ~~~~~--~-----~-----------~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~ 145 (704)
...+. . . ...+..+.-.+.|+..|..+....+.+..++++||.- ..+|......++..+..
T Consensus 106 ~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPt-sgLD~~~~~~l~~lL~~ 184 (402)
T PRK09536 106 RSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPT-ASLDINHQVRTLELVRR 184 (402)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHH
Confidence 00000 0 0 0012234446788888888888888999999999998 78888766655554444
Q ss_pred HhccCcEEEEEecCCC
Q 005291 146 LRASKLKILITSATLD 161 (704)
Q Consensus 146 ~~~~~~kiI~~SATl~ 161 (704)
....+..+|+.|+-++
T Consensus 185 l~~~g~TIIivsHdl~ 200 (402)
T PRK09536 185 LVDDGKTAVAAIHDLD 200 (402)
T ss_pred HHhcCCEEEEEECCHH
Confidence 4333567777766553
No 299
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.62 E-value=0.0013 Score=69.57 Aligned_cols=127 Identities=20% Similarity=0.308 Sum_probs=72.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-c-chhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-T-QPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~-~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~ 96 (704)
.++++.++||+|+||||.+..+....... +++|++ . -+.|..+.+.....+...+..+ +. . . . ..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~-g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~---~~---~-~-~-~~--- 179 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ-GKKVLLAAGDTFRAAAIEQLQVWGERVGVPV---IA---Q-K-E-GA--- 179 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCeEEEEecCccchhhHHHHHHHHHHcCceE---EE---e-C-C-CC---
Confidence 36789999999999998887777665433 444443 3 3456666666666666555321 11 0 0 0 00
Q ss_pred eEEcchHHH-HHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh------ccCcEEEEEecCCChHH
Q 005291 97 IKYLTDGVL-LREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR------ASKLKILITSATLDGEK 164 (704)
Q Consensus 97 I~~~T~g~L-l~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~------~~~~kiI~~SATl~~~~ 164 (704)
.+... ...+. .....++++||||=+- |....+.+..-++.+.+.. .+.-.+++++||...+.
T Consensus 180 ----dpa~~v~~~l~-~~~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~ 248 (318)
T PRK10416 180 ----DPASVAFDAIQ-AAKARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNA 248 (318)
T ss_pred ----CHHHHHHHHHH-HHHhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHH
Confidence 01111 11111 1124679999999998 5544444444455554321 13567899999985544
No 300
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00052 Score=76.07 Aligned_cols=126 Identities=21% Similarity=0.321 Sum_probs=71.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCC-CcEE-EE-cchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTK-SGII-GV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSE 93 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~-~~~i-lv-~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~ 93 (704)
+..+++++++||||+||||++..+........ +.+| ++ +-+.|..+.++....+..++..+ .
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v--------~------- 411 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAV--------H------- 411 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCcee--------E-------
Confidence 45789999999999999988876665433221 2333 33 34556666555554443333211 0
Q ss_pred ccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHh
Q 005291 94 RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVS 166 (704)
Q Consensus 94 ~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~ 166 (704)
...+.+.+...+. .+.++++||||.+- ++-....+...+..+..... ...+++++++.....+.
T Consensus 412 ----~a~d~~~L~~aL~---~l~~~DLVLIDTaG-~s~~D~~l~eeL~~L~aa~~-~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 412 ----EADSAESLLDLLE---RLRDYKLVLIDTAG-MGQRDRALAAQLNWLRAARQ-VTSLLVLPANAHFSDLD 475 (559)
T ss_pred ----ecCcHHHHHHHHH---HhccCCEEEecCCC-cchhhHHHHHHHHHHHHhhc-CCcEEEEECCCChhHHH
Confidence 0012333444333 24578999999997 33332333333444444333 56788889987654443
No 301
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=0.00067 Score=70.45 Aligned_cols=65 Identities=25% Similarity=0.260 Sum_probs=47.9
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~ 161 (704)
.+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+...... +..+|+.|..++
T Consensus 139 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~ 204 (269)
T PRK13648 139 EPNALSGGQKQRVAIAGVLALNPSVIILDEAT-SMLDPDARQNLLDLVRKVKSEHNITIISITHDLS 204 (269)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch
Confidence 34457888888887777788899999999998 789998777666655554332 467777777654
No 302
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.62 E-value=6.1e-05 Score=77.57 Aligned_cols=138 Identities=20% Similarity=0.241 Sum_probs=77.6
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhH-------------HH--HHHHHHHHHHhCC----
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRV-------------AA--VSVARRVAQELGV---- 75 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~-------------la--~~~a~rva~~~~~---- 75 (704)
.+.+|+.+.|+||+||||||++..+........ |.|.+ -.|... +. ..+.+.+.-....
T Consensus 34 ~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~-G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~ 112 (257)
T PRK11247 34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSA-GELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRD 112 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-eEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHH
Confidence 356899999999999999999998887655443 33322 111000 00 0011111000000
Q ss_pred ---ccCceeeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCc
Q 005291 76 ---RLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKL 151 (704)
Q Consensus 76 ---~vg~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~ 151 (704)
..-..+| ... ..+..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... .+.
T Consensus 113 ~~~~~l~~~g----l~~--~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~~~~~ 185 (257)
T PRK11247 113 AALQALAAVG----LAD--RANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL-GALDALTRIEMQDLIESLWQQHGF 185 (257)
T ss_pred HHHHHHHHcC----Chh--HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHHcCC
Confidence 0000000 000 012233446778877777777778899999999998 78998876666555554422 256
Q ss_pred EEEEEecCCC
Q 005291 152 KILITSATLD 161 (704)
Q Consensus 152 kiI~~SATl~ 161 (704)
.+|+.|.-++
T Consensus 186 tviivsHd~~ 195 (257)
T PRK11247 186 TVLLVTHDVS 195 (257)
T ss_pred EEEEEeCCHH
Confidence 6777766543
No 303
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=0.00017 Score=73.26 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=47.8
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+...+..... +..+|+.|..++
T Consensus 135 ~~~LS~G~~~rl~la~aL~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~ 197 (236)
T cd03253 135 GLKLSGGEKQRVAIARAILKNPPILLLDEAT-SALDTHTEREIQAALRDVSK-GRTTIVIAHRLS 197 (236)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH
Confidence 3456788888887777788999999999998 78998887776666665544 566777776554
No 304
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=0.00053 Score=69.59 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=46.4
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~ 161 (704)
.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... .+..+|+.|.-++
T Consensus 144 ~~LSgG~~qrl~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~ 207 (233)
T PRK11629 144 SELSGGERQRVAIARALVNNPRLVLADEPT-GNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ 207 (233)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 346777777777777778899999999998 78999887776666655432 2567787777654
No 305
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=6e-05 Score=76.76 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=46.8
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhccc
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~~ 169 (704)
-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+......+..+|+.|..+ +.+.++.
T Consensus 137 ~LS~G~~qrl~la~al~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~--~~~~~~~ 204 (237)
T PRK11614 137 TMSGGEQQMLAIGRALMSQPRLLLLDEPS-LGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA--NQALKLA 204 (237)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEcCcc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH--HHHHhhC
Confidence 35677777776666678889999999998 78998887776666655443356677766543 3344443
No 306
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=0.0001 Score=75.16 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=46.9
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+...... +..+|+.|.-++
T Consensus 134 ~~~LS~G~~qrl~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~ 198 (239)
T cd03296 134 PAQLSGGQRQRVALARALAVEPKVLLLDEPF-GALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE 198 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3346788888887777788899999999998 789998777766655554332 466777777653
No 307
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.61 E-value=0.0005 Score=71.31 Aligned_cols=70 Identities=21% Similarity=0.222 Sum_probs=48.9
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCChHHHhccc
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~~~~~~~~~ 169 (704)
+.-.+.|+..+..+....+.+..++|+||+- ..+|......+...+...... +..+|+.|.-+ +.+..+.
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~--~~~~~~~ 217 (267)
T PRK15112 147 PHMLAPGQKQRLGLARALILRPKVIIADEAL-ASLDMSMRSQLINLMLELQEKQGISYIYVTQHL--GMMKHIS 217 (267)
T ss_pred chhcCHHHHHHHHHHHHHHhCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH--HHHHHhc
Confidence 3457888888888777788899999999998 789988766665555554331 45667766654 3444443
No 308
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.61 E-value=0.0002 Score=72.89 Aligned_cols=147 Identities=18% Similarity=0.233 Sum_probs=85.1
Q ss_pred HHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhHHH--HHHHHH-------HHHHhCCccCcee
Q 005291 12 TIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAA--VSVARR-------VAQELGVRLGEEV 81 (704)
Q Consensus 12 ~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~la--~~~a~r-------va~~~~~~vg~~v 81 (704)
+|--.|.+|+.+.+.||+||||||++..+......+. ++|.+ -++.-... ....++ .+......+.+.+
T Consensus 20 di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~-G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NI 98 (345)
T COG1118 20 DISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA-GRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNI 98 (345)
T ss_pred cceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCC-ceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhh
Confidence 4445678999999999999999999998887766554 44433 22111111 111122 2333344555555
Q ss_pred eeeeecccccCcc----cce-----------------EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHH
Q 005291 82 GYAIRFEDRTSER----TLI-----------------KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLV 140 (704)
Q Consensus 82 g~~~~~~~~~~~~----~~I-----------------~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~ll 140 (704)
.|+.+........ +++ .=.+.|.-.|..+.......+.++.+||.- ..+|......+-
T Consensus 99 AFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf-~ALDa~vr~~lr 177 (345)
T COG1118 99 AFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPF-GALDAKVRKELR 177 (345)
T ss_pred hhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCc-hhhhHHHHHHHH
Confidence 5554332111110 111 113556666666666677888999999997 788887655543
Q ss_pred HHHHHHhc-cCcEEEEEecCC
Q 005291 141 KRLVNLRA-SKLKILITSATL 160 (704)
Q Consensus 141 k~l~~~~~-~~~kiI~~SATl 160 (704)
+.+.+... .+...|+.|...
T Consensus 178 ~wLr~~~~~~~~ttvfVTHD~ 198 (345)
T COG1118 178 RWLRKLHDRLGVTTVFVTHDQ 198 (345)
T ss_pred HHHHHHHHhhCceEEEEeCCH
Confidence 33333222 167788887653
No 309
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.60 E-value=0.00014 Score=74.20 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=48.1
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.-.+.|+..+..+....+.+.+++++||+. ..+|......+.+.+..... +..+|+.|.-++
T Consensus 140 ~~~~LS~Ge~qrv~laral~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~ 203 (242)
T TIGR03411 140 LAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPV-AGMTDEETEKTAELLKSLAG-KHSVVVVEHDME 203 (242)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc-cCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH
Confidence 44456788888888777788899999999998 78999887776666655544 566777776543
No 310
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.59 E-value=0.00052 Score=71.42 Aligned_cols=63 Identities=24% Similarity=0.307 Sum_probs=45.4
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++++||.- ..+|......+...+......+..+|+.|.-+
T Consensus 140 ~~~LSgG~~qrv~laraL~~~p~llllDEPt-~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~ 202 (272)
T PRK15056 140 IGELSGGQKKRVFLARAIAQQGQVILLDEPF-TGVDVKTEARIISLLRELRDEGKTMLVSTHNL 202 (272)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3346777777777777778889999999998 78998877766665555443356677776654
No 311
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.59 E-value=0.00017 Score=73.48 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=47.9
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... +..+|+.|..++
T Consensus 136 ~~~LSgG~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~ 198 (237)
T cd03252 136 GAGLSGGQRQRIAIARALIHNPRILIFDEAT-SALDYESEHAIMRNMHDICA-GRTVIIIAHRLS 198 (237)
T ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH
Confidence 4456778877777777778899999999998 78999887777777666544 666777776553
No 312
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=0.00011 Score=74.98 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=44.3
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||.. ..+|......+...+......+..+|+.|..+
T Consensus 139 ~~~LS~G~~qrv~laral~~~p~llilDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 201 (242)
T PRK11124 139 PLHLSGGQQQRVAIARALMMEPQVLLFDEPT-AALDPEITAQIVSIIRELAETGITQVIVTHEV 201 (242)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC-CcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3346777777777777778899999999998 78998876666555554433255666666554
No 313
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.59 E-value=6.7e-05 Score=80.36 Aligned_cols=68 Identities=21% Similarity=0.296 Sum_probs=48.9
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCChHHHhccc
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~~~~~~~~~ 169 (704)
-.+.|+..|..+......+.+++++||+. ..+|......++..+...... +..+|+.|.-+ +.+.++.
T Consensus 140 ~LSgGqkQRV~IARAL~~~P~iLLlDEPt-s~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~--~~v~~~~ 208 (343)
T TIGR02314 140 NLSGGQKQRVAIARALASNPKVLLCDEAT-SALDPATTQSILELLKEINRRLGLTILLITHEM--DVVKRIC 208 (343)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH--HHHHHhC
Confidence 36778888888877788899999999998 789988766666555554332 56778777654 3444444
No 314
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=0.0001 Score=76.94 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=47.4
Q ss_pred cceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCC
Q 005291 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (704)
Q Consensus 95 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~ 161 (704)
..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+...... +..+|+.|.-++
T Consensus 133 ~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt-~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~ 199 (277)
T PRK13652 133 RVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPT-AGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD 199 (277)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 345567888888888877788899999999998 789987766655555544332 466777666543
No 315
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.59 E-value=0.00021 Score=72.08 Aligned_cols=66 Identities=18% Similarity=0.117 Sum_probs=48.2
Q ss_pred cceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCC
Q 005291 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (704)
Q Consensus 95 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~ 161 (704)
..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+...+..... .+..+|+.|..++
T Consensus 133 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~ 199 (225)
T PRK10247 133 KNIAELSGGEKQRISLIRNLQFMPKVLLLDEIT-SALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD 199 (225)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH
Confidence 344556788888887777788899999999997 78998876666555554432 2567888877654
No 316
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.58 E-value=0.00011 Score=75.04 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=44.9
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+......+..+|+.|..+
T Consensus 135 ~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~ 197 (241)
T PRK10895 135 GQSLSGGERRRVEIARALAANPKFILLDEPF-AGVDPISVIDIKRIIEHLRDSGLGVLITDHNV 197 (241)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH
Confidence 3446778877777777778899999999998 78998876665555544433356677777654
No 317
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.58 E-value=0.00097 Score=67.18 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=46.6
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+......+..+|+.|.-+
T Consensus 147 ~~~LS~G~~qrl~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~ 209 (224)
T TIGR02324 147 PATFSGGEQQRVNIARGFIADYPILLLDEPT-ASLDAANRQVVVELIAEAKARGAALIGIFHDE 209 (224)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 4446778777777777778899999999998 78998877776666655443356777777663
No 318
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.58 E-value=0.00018 Score=72.31 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=46.9
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~ 161 (704)
.-.+.|+..+..+....+.+.+++++||+. ..+|......++..+..... .+..+|+.|.-++
T Consensus 140 ~~lS~G~~qrv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 140 HNLSGGQKQRVAIARALVHRPKLVLADEPT-AALDSKSGRDVVELMQKLAREQGCTILIVTHDNR 203 (220)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 346778887777777788899999999998 78998887666655555443 2577888777654
No 319
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.58 E-value=0.00062 Score=68.97 Aligned_cols=64 Identities=19% Similarity=0.263 Sum_probs=47.2
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+...... +..+|+.|.-++
T Consensus 112 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 176 (230)
T TIGR01184 112 PGQLSGGMKQRVAIARALSIRPKVLLLDEPF-GALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD 176 (230)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC-cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4446788888887777788899999999998 789988877766666554332 566777776543
No 320
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.0008 Score=70.35 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=47.3
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|.-+
T Consensus 142 ~~~~LSgG~~qrv~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~ 205 (280)
T PRK13649 142 NPFELSGGQMRRVAIAGILAMEPKILVLDEPT-AGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM 205 (280)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH
Confidence 34457788888888777788899999999998 78999887776666655443356677766654
No 321
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00011 Score=78.42 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=48.0
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~ 161 (704)
.-.+.|+..|..+....+.+.++||+||.- ..+|......+++.+..... .+..+|+.|.-++
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPt-s~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~ 216 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPV-SALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS 216 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCC-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 346888888888888888999999999998 78998877766666655433 2577888877654
No 322
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.57 E-value=5.7e-05 Score=76.89 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=46.9
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+++.+...... +..+|+.|.-+
T Consensus 128 ~~~lS~G~~qrl~laral~~~p~llllDEP~-~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~ 191 (237)
T TIGR00968 128 PNQLSGGQRQRVALARALAVEPQVLLLDEPF-GALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ 191 (237)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3446788888887777788899999999998 789998877766666654432 46677777654
No 323
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=0.00055 Score=71.10 Aligned_cols=63 Identities=22% Similarity=0.273 Sum_probs=46.5
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+...... +..+|+.|..+
T Consensus 158 ~~~LS~Gq~qrv~lAral~~~p~illLDEPt-~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~ 221 (269)
T cd03294 158 PDELSGGMQQRVGLARALAVDPDILLMDEAF-SALDPLIRREMQDELLRLQAELQKTIVFITHDL 221 (269)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3446888888887777788899999999998 789998877766666554332 46677776654
No 324
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=0.00013 Score=72.88 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=46.1
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+..... +..+|+.|.-+
T Consensus 127 ~~~~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~ 189 (211)
T cd03264 127 KIGSLSGGMRRRVGIAQALVGDPSILIVDEPT-AGLDPEERIRFRNLLSELGE-DRIVILSTHIV 189 (211)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCH
Confidence 34446788888887777788999999999998 78888877776666655544 55566666543
No 325
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.57 E-value=0.00017 Score=72.60 Aligned_cols=63 Identities=21% Similarity=0.175 Sum_probs=46.2
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... +..+|+.|..++
T Consensus 137 ~~~LS~G~~qr~~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~ 199 (221)
T cd03244 137 GENLSVGQRQLLCLARALLRKSKILVLDEAT-ASVDPETDALIQKTIREAFK-DCTVLTIAHRLD 199 (221)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH
Confidence 3446778877777777788899999999998 78898877766666655544 566777766543
No 326
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00014 Score=71.12 Aligned_cols=51 Identities=24% Similarity=0.331 Sum_probs=40.0
Q ss_pred CCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhccc
Q 005291 115 LSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (704)
Q Consensus 115 l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~~ 169 (704)
+-++++.|+||.+ ..+|-|.+..+-+-+...+.++.-+++.|+. +.+.+|.
T Consensus 160 ~lePkl~ILDE~D-SGLDIdalk~V~~~i~~lr~~~~~~liITHy---~rll~~i 210 (251)
T COG0396 160 LLEPKLAILDEPD-SGLDIDALKIVAEGINALREEGRGVLIITHY---QRLLDYI 210 (251)
T ss_pred hcCCCEEEecCCC-cCccHHHHHHHHHHHHHHhcCCCeEEEEecH---HHHHhhc
Confidence 5568999999999 8999999888877777777777888888764 3355554
No 327
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.56 E-value=0.00084 Score=70.37 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=48.5
Q ss_pred cceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCC
Q 005291 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (704)
Q Consensus 95 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~ 161 (704)
..+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+...+..... .+..+|+.|.-++
T Consensus 141 ~~~~~LSgGq~qrv~laraL~~~p~illlDEPt-~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~ 207 (286)
T PRK13646 141 QSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPT-AGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN 207 (286)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 345557888888888877788899999999998 78998876666555554432 2577787776654
No 328
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.56 E-value=0.00026 Score=71.48 Aligned_cols=64 Identities=27% Similarity=0.269 Sum_probs=46.2
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.-.+.|...+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|..+
T Consensus 140 ~~~~LS~G~~qrl~laral~~~p~illlDEP~-~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~ 203 (226)
T cd03234 140 LVKGISGGERRRVSIAVQLLWDPKVLILDEPT-SGLDSFTALNLVSTLSQLARRNRIVILTIHQP 203 (226)
T ss_pred cccCcCHHHHHHHHHHHHHHhCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 34456778777777776678889999999998 78998876666665555433356777777765
No 329
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.56 E-value=8.2e-05 Score=80.02 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=46.0
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~ 161 (704)
.-.+.|+..+..+....+.+.+++++||+- ..+|......+++.+...... +..+|+.|.-++
T Consensus 139 ~~LSgGq~qRv~lAraL~~~p~iLlLDEPt-s~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~ 202 (343)
T PRK11153 139 AQLSGGQKQRVAIARALASNPKVLLCDEAT-SALDPATTRSILELLKDINRELGLTIVLITHEMD 202 (343)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 346778888887777788899999999998 789988766666655554332 567777766543
No 330
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.56 E-value=0.00051 Score=68.18 Aligned_cols=141 Identities=15% Similarity=0.170 Sum_probs=80.4
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE-----EEEcchhhHH-HHHHHHHHH--------------HHhCC
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-----IGVTQPRRVA-AVSVARRVA--------------QELGV 75 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~-----ilv~~P~r~l-a~~~a~rva--------------~~~~~ 75 (704)
.+..|+.+.|.||+||||||++..++.......|.. |.++.+...+ ...+.+.+. +..+.
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l 106 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACAL 106 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCc
Confidence 456899999999999999999998887765544432 3332211111 111111110 00000
Q ss_pred ccCceeeeee-ecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHH-HhccCcEE
Q 005291 76 RLGEEVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN-LRASKLKI 153 (704)
Q Consensus 76 ~vg~~vg~~~-~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~-~~~~~~ki 153 (704)
...+.... ..+.. ......-.+.|+..+..+......+.+++++||.- ..+|.+....++..++. ....+..+
T Consensus 107 --~~~~~~~~~~~~~~--~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~ll~~~~~~~~tv 181 (204)
T cd03250 107 --EPDLEILPDGDLTE--IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPL-SAVDAHVGRHIFENCILGLLLNNKTR 181 (204)
T ss_pred --HHHHHhccCcccce--ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHHhccCCCEE
Confidence 00000000 00000 01123346888888888877788899999999998 78888877766665443 32324667
Q ss_pred EEEecCCC
Q 005291 154 LITSATLD 161 (704)
Q Consensus 154 I~~SATl~ 161 (704)
|+.|..++
T Consensus 182 i~~sh~~~ 189 (204)
T cd03250 182 ILVTHQLQ 189 (204)
T ss_pred EEEeCCHH
Confidence 77776643
No 331
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.55 E-value=9.9e-05 Score=85.61 Aligned_cols=59 Identities=24% Similarity=0.261 Sum_probs=48.9
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.|...|..+....+++.+++|+||+- ..+|.+....+++.+....+ +..+|+.|+-+
T Consensus 472 LSgGq~QRialARall~~~~iliLDEpt-s~LD~~t~~~i~~~l~~~~~-~~tvIiitHr~ 530 (588)
T PRK13657 472 LSGGERQRLAIARALLKDPPILILDEAT-SALDVETEAKVKAALDELMK-GRTTFIIAHRL 530 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHhc-CCEEEEEEecH
Confidence 6778888888888889999999999998 78999988887777766654 77788887765
No 332
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.55 E-value=0.00011 Score=75.42 Aligned_cols=63 Identities=17% Similarity=0.285 Sum_probs=44.6
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|.-+
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~ 204 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPT-SALDPELVGEVLNTIRQLAQEKRTMVIVTHEM 204 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3346778877777777778899999999998 78998877766665555443245666665543
No 333
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=7.8e-05 Score=76.16 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=46.8
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||+. ..+|.+....+++.+...... +..+|+.|.-+
T Consensus 133 ~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~ 196 (242)
T cd03295 133 PHELSGGQQQRVGVARALAADPPLLLMDEPF-GALDPITRDQLQEEFKRLQQELGKTIVFVTHDI 196 (242)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 3446788888888777788999999999998 789988777766666655432 45677776654
No 334
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=0.00017 Score=75.01 Aligned_cols=65 Identities=22% Similarity=0.238 Sum_probs=47.6
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~ 161 (704)
.+.-.+.|+..+..+....+.+.+++++||+- ..+|......++..+...... +..+|+.|..++
T Consensus 139 ~~~~LS~G~~qrl~laral~~~p~lllLDEP~-~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 204 (271)
T PRK13632 139 EPQNLSGGQKQRVAIASVLALNPEIIIFDEST-SMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD 204 (271)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh
Confidence 34457788888888777788899999999998 789988766666665554432 356777777654
No 335
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=0.00017 Score=75.16 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=48.5
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~ 161 (704)
.+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+++.+...... +..+|+.|.-++
T Consensus 137 ~~~~LS~G~~qrv~lAraL~~~p~llllDEPt-~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~ 202 (277)
T PRK13642 137 EPARLSGGQKQRVAVAGIIALRPEIIILDEST-SMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD 202 (277)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 34457788888887777788899999999998 789998777766655544332 567888777665
No 336
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=0.00014 Score=75.81 Aligned_cols=64 Identities=22% Similarity=0.257 Sum_probs=47.5
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++|+||.- ..+|......++..+......+..+|+.|.-++
T Consensus 135 ~~~LS~Gq~qrv~laral~~~p~llllDEPt-~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~ 198 (275)
T PRK13639 135 PHHLSGGQKKRVAIAGILAMKPEIIVLDEPT-SGLDPMGASQIMKLLYDLNKEGITIIISTHDVD 198 (275)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 3346778888888777788899999999998 789988777766666554433567777776653
No 337
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.55 E-value=0.00012 Score=84.65 Aligned_cols=142 Identities=25% Similarity=0.301 Sum_probs=83.4
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhHHHHHH-HHHHH---HH---hCCccCceeeeeeec
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAVSV-ARRVA---QE---LGVRLGEEVGYAIRF 87 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~la~~~-a~rva---~~---~~~~vg~~vg~~~~~ 87 (704)
.+..|+.+.|+|||||||||++..++...... .|.|.+ -++.+.....- -+.++ +. ++..+...+.++...
T Consensus 351 ~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~-~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~ 429 (567)
T COG1132 351 SIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT-SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPD 429 (567)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCC
Confidence 46789999999999999999998887766654 444444 44433222111 11111 11 111111111111100
Q ss_pred ---c---------------cccC--cccceE----EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHH
Q 005291 88 ---E---------------DRTS--ERTLIK----YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (704)
Q Consensus 88 ---~---------------~~~~--~~~~I~----~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l 143 (704)
+ ...+ -+|.|- -.+.|.-.|.......+.+..++|+|||. ..+|...-..+.+.+
T Consensus 430 at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaT-SalD~~tE~~I~~~l 508 (567)
T COG1132 430 ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEAT-SALDTETEALIQDAL 508 (567)
T ss_pred CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccc-cccCHHhHHHHHHHH
Confidence 0 0000 012221 25778888888888889999999999999 789988777766666
Q ss_pred HHHhccCcEEEEEecCC
Q 005291 144 VNLRASKLKILITSATL 160 (704)
Q Consensus 144 ~~~~~~~~kiI~~SATl 160 (704)
....+ +..+++.++-+
T Consensus 509 ~~l~~-~rT~iiIaHRl 524 (567)
T COG1132 509 KKLLK-GRTTLIIAHRL 524 (567)
T ss_pred HHHhc-CCEEEEEeccH
Confidence 65554 54566666655
No 338
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=5e-05 Score=81.90 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=46.0
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
-.+.|+..|..+......+.+++++||.- ..+|......+.+.+...... +..+|+.|.-+
T Consensus 134 ~LSgGq~QRvalARAL~~~P~llLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~ 195 (356)
T PRK11650 134 ELSGGQRQRVAMGRAIVREPAVFLFDEPL-SNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ 195 (356)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46788888888888889999999999998 789988766655555444332 56778777654
No 339
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.54 E-value=4.2e-05 Score=80.93 Aligned_cols=143 Identities=18% Similarity=0.246 Sum_probs=85.7
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEE------EcchhhHHHHHHHHHHHHHhCCccCceeeeeeeccc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG------VTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED 89 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~il------v~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~ 89 (704)
.+.+|+++.+.||+||||||++..+......+.|.+.+ -+.|.+--..-+.+..+-.-...|.+.|+|..+...
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~ 106 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK 106 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC
Confidence 46789999999999999999999998877665443221 122322111122222222233444555555544211
Q ss_pred ccCc--------------------ccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-
Q 005291 90 RTSE--------------------RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA- 148 (704)
Q Consensus 90 ~~~~--------------------~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~- 148 (704)
...+ .....=.+.|.-.|..+......++.++.+||.- ..+|......+-..+.....
T Consensus 107 ~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPl-SaLD~kLR~~mr~Elk~lq~~ 185 (352)
T COG3842 107 KLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPL-SALDAKLREQMRKELKELQRE 185 (352)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcc-cchhHHHHHHHHHHHHHHHHh
Confidence 1110 0111124677788888888888999999999997 67888876665444444332
Q ss_pred cCcEEEEEecC
Q 005291 149 SKLKILITSAT 159 (704)
Q Consensus 149 ~~~kiI~~SAT 159 (704)
.++..|+.|.-
T Consensus 186 ~giT~i~VTHD 196 (352)
T COG3842 186 LGITFVYVTHD 196 (352)
T ss_pred cCCeEEEEECC
Confidence 25667776554
No 340
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=0.0001 Score=74.80 Aligned_cols=64 Identities=20% Similarity=0.300 Sum_probs=45.8
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+.+.+++|+||.. ..+|......+.+.+...... +..+|+.|.-+
T Consensus 126 ~~~~LS~G~~qrv~laral~~~p~lllLDEP~-~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~ 190 (232)
T PRK10771 126 LPGQLSGGQRQRVALARCLVREQPILLLDEPF-SALDPALRQEMLTLVSQVCQERQLTLLMVSHSL 190 (232)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 34456788887777777788899999999998 789998776666655554321 45666666544
No 341
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.54 E-value=0.0001 Score=75.48 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=46.7
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+..... ...+|+.|.-+
T Consensus 141 ~~~~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~ 203 (247)
T TIGR00972 141 SALGLSGGQQQRLCIARALAVEPEVLLLDEPT-SALDPIATGKIEELIQELKK-KYTIVIVTHNM 203 (247)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHh-cCeEEEEecCH
Confidence 34457888888888777788899999999998 78998877776666655544 45566666554
No 342
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.54 E-value=0.00067 Score=75.59 Aligned_cols=137 Identities=17% Similarity=0.168 Sum_probs=80.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchh----hH-H--HHHHHHHHHH---HhCCc--------
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPR----RV-A--AVSVARRVAQ---ELGVR-------- 76 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~----r~-l--a~~~a~rva~---~~~~~-------- 76 (704)
.+..|+.+.|+||+||||||++..++.......| .|.+ -.+. .. + ...+.+.+.- ..+..
T Consensus 46 sI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sG-eI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i 124 (549)
T PRK13545 46 EVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG-TVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEII 124 (549)
T ss_pred EEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCce-EEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHH
Confidence 3568999999999999999999988877654433 3322 1000 00 0 0011111100 00000
Q ss_pred --cCceeeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEE
Q 005291 77 --LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (704)
Q Consensus 77 --vg~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI 154 (704)
....+| ... .....+.-.+.|+..+..+....+.+++++|+||+- ..+|......+++.+......+..+|
T Consensus 125 ~elLe~lg----L~~--~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPT-sgLD~~sr~~LlelL~el~~~G~TII 197 (549)
T PRK13545 125 PEIIEFAD----IGK--FIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEAL-SVGDQTFTKKCLDKMNEFKEQGKTIF 197 (549)
T ss_pred HHHHHHcC----Chh--HhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 000001 000 012334557889888888877788899999999998 78998876666666555443356777
Q ss_pred EEecCC
Q 005291 155 ITSATL 160 (704)
Q Consensus 155 ~~SATl 160 (704)
+.|+-+
T Consensus 198 IVSHdl 203 (549)
T PRK13545 198 FISHSL 203 (549)
T ss_pred EEECCH
Confidence 777654
No 343
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=0.00014 Score=75.48 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=45.2
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~ 161 (704)
-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+...... +..+|+.|.-++
T Consensus 147 ~LSgG~~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~ 209 (265)
T PRK10575 147 SLSGGERQRAWIAMLVAQDSRCLLLDEPT-SALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN 209 (265)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 35777777777777778899999999998 789988776665555554322 567777777654
No 344
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=9.7e-05 Score=73.94 Aligned_cols=64 Identities=19% Similarity=0.323 Sum_probs=45.7
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+...... +..+|+.|.-+
T Consensus 128 ~~~~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 192 (214)
T cd03297 128 YPAQLSGGEKQRVALARALAAQPELLLLDEPF-SALDRALRLQLLPELKQIKKNLNIPVIFVTHDL 192 (214)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH
Confidence 34446778777777777778899999999998 789988766666655554332 45677776654
No 345
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.54 E-value=0.00027 Score=72.09 Aligned_cols=64 Identities=19% Similarity=0.286 Sum_probs=46.1
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+...+..... .+..+|+.|.-++
T Consensus 129 ~~~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~ 193 (241)
T PRK14250 129 VKNLSGGEAQRVSIARTLANNPEVLLLDEPT-SALDPTSTEIIEELIVKLKNKMNLTVIWITHNME 193 (241)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence 4446788888887777788899999999998 78988876666555555433 1566777766543
No 346
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.53 E-value=0.00019 Score=75.81 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=46.8
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+++.+......+..+|+.|.-++
T Consensus 162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt-~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~ 226 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPT-AGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD 226 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH
Confidence 34446777777777777778899999999998 789988766666655554433567777776543
No 347
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.53 E-value=0.00055 Score=79.35 Aligned_cols=144 Identities=23% Similarity=0.289 Sum_probs=85.6
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHH-HHHHHHH---HHh---CCccCceeeeee---
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRVA---QEL---GVRLGEEVGYAI--- 85 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~-~~a~rva---~~~---~~~vg~~vg~~~--- 85 (704)
.+..|+.+.|+|++||||||++..++....+..|...+--+|...... +..+.++ ++. ...+.+.+.+..
T Consensus 365 ~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~ 444 (582)
T PRK11176 365 KIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQ 444 (582)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCC
Confidence 356899999999999999999998888776654433332334322211 1111111 110 000000000000
Q ss_pred -e------------cc---cccC--cccce----EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHH
Q 005291 86 -R------------FE---DRTS--ERTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (704)
Q Consensus 86 -~------------~~---~~~~--~~~~I----~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l 143 (704)
. .+ .... -++.+ .-.+.|...|..+....+++.+++|+||+- ..+|.+....+.+.+
T Consensus 445 ~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEpt-saLD~~t~~~i~~~l 523 (582)
T PRK11176 445 YSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT-SALDTESERAIQAAL 523 (582)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcc-ccCCHHHHHHHHHHH
Confidence 0 00 0000 01111 126788888888888888999999999998 789998877777777
Q ss_pred HHHhccCcEEEEEecCCC
Q 005291 144 VNLRASKLKILITSATLD 161 (704)
Q Consensus 144 ~~~~~~~~kiI~~SATl~ 161 (704)
....+ +..+|+.|+-+.
T Consensus 524 ~~~~~-~~tvI~VtHr~~ 540 (582)
T PRK11176 524 DELQK-NRTSLVIAHRLS 540 (582)
T ss_pred HHHhC-CCEEEEEecchH
Confidence 66654 778888888763
No 348
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.53 E-value=0.00037 Score=71.80 Aligned_cols=144 Identities=24% Similarity=0.290 Sum_probs=81.3
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE---------------cchhhHHH-HHHHHHHHH---HhCCc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV---------------TQPRRVAA-VSVARRVAQ---ELGVR 76 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv---------------~~P~r~la-~~~a~rva~---~~~~~ 76 (704)
.+..|+.+.|+||+||||||++..+........| .|.+ .+...... ..+.+.+.. ..+..
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 101 (255)
T PRK11248 23 TLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHG-SITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVE 101 (255)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCC
Confidence 3568999999999999999999988876544333 2211 11100000 011111110 00000
Q ss_pred c----------CceeeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHH
Q 005291 77 L----------GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (704)
Q Consensus 77 v----------g~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~ 146 (704)
. -..+| ... .....+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+...
T Consensus 102 ~~~~~~~~~~~l~~~g----l~~--~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~ 174 (255)
T PRK11248 102 KMQRLEIAHQMLKKVG----LEG--AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF-GALDAFTREQMQTLLLKL 174 (255)
T ss_pred HHHHHHHHHHHHHHcC----Chh--HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHH
Confidence 0 00000 000 011223346788888877777788899999999998 799998877766666554
Q ss_pred hc-cCcEEEEEecCCChHHHhccc
Q 005291 147 RA-SKLKILITSATLDGEKVSKFF 169 (704)
Q Consensus 147 ~~-~~~kiI~~SATl~~~~~~~~~ 169 (704)
.. .+..+|+.|.-+ +.+..+.
T Consensus 175 ~~~~g~tviivsH~~--~~~~~~~ 196 (255)
T PRK11248 175 WQETGKQVLLITHDI--EEAVFMA 196 (255)
T ss_pred HHhcCCEEEEEeCCH--HHHHHhC
Confidence 22 256677776654 3344443
No 349
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.53 E-value=0.001 Score=68.51 Aligned_cols=63 Identities=13% Similarity=0.226 Sum_probs=46.9
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+......+..+|+.|.-+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~ 212 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPT-SALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 4456778888877777788899999999998 78998877776665555443356777777654
No 350
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.53 E-value=0.0011 Score=69.40 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=47.8
Q ss_pred cceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 95 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
..+.-.+.|+..+..+....+.+.+++|+||.- ..+|......++..+...... +..+|+.|.-+
T Consensus 140 ~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt-~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~ 205 (287)
T PRK13637 140 KSPFELSGGQKRRVAIAGVVAMEPKILILDEPT-AGLDPKGRDEILNKIKELHKEYNMTIILVSHSM 205 (287)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc-cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 345567889988888888888999999999998 789988766665555544322 46667766654
No 351
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.53 E-value=0.00015 Score=75.25 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=46.4
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+++.+...... +..+|+.|.-+
T Consensus 141 ~~~LSgGq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~ 204 (269)
T PRK11831 141 PSELSGGMARRAALARAIALEPDLIMFDEPF-VGQDPITMGVLVKLISELNSALGVTCVVVSHDV 204 (269)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 3346778888877777778899999999998 789998877666666554332 46777777754
No 352
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.53 E-value=0.00017 Score=68.00 Aligned_cols=145 Identities=18% Similarity=0.253 Sum_probs=77.8
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE------cchhhHHHHHHHHHHHHHhCCccCceeeeeeeccc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV------TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED 89 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv------~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~ 89 (704)
.+..++.+.|.||+|+||||++..+.....+..|...+- +.|..--+..+.+.=.-.....+.+.+|.+..-.-
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L 100 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL 100 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccc
Confidence 356789999999999999999998888766554432221 23432212111111000001122222332221111
Q ss_pred ccCc--cc-------ce----------EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-c
Q 005291 90 RTSE--RT-------LI----------KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-S 149 (704)
Q Consensus 90 ~~~~--~~-------~I----------~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~ 149 (704)
+... .. ++ --.+.|.-.|..+..-.+++--++.+||.- ..+|......++.-+...+. .
T Consensus 101 kL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPF-sALdP~LR~eMl~Lv~~l~~E~ 179 (231)
T COG3840 101 KLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPF-SALDPALRAEMLALVSQLCDER 179 (231)
T ss_pred ccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCch-hhcCHHHHHHHHHHHHHHHHhh
Confidence 1000 00 00 013445555555555556666799999997 78999876555544444332 2
Q ss_pred CcEEEEEecCCC
Q 005291 150 KLKILITSATLD 161 (704)
Q Consensus 150 ~~kiI~~SATl~ 161 (704)
+..+++.|.+++
T Consensus 180 ~~TllmVTH~~~ 191 (231)
T COG3840 180 KMTLLMVTHHPE 191 (231)
T ss_pred CCEEEEEeCCHH
Confidence 688888888874
No 353
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.52 E-value=0.00015 Score=74.85 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=46.7
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+...+......+..+|+.|..++
T Consensus 134 ~~~~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (256)
T TIGR03873 134 DMSTLSGGERQRVHVARALAQEPKLLLLDEPT-NHLDVRAQLETLALVRELAATGVTVVAALHDLN 198 (256)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCcc-ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 34446778877777777778889999999998 789988766665555554333567777777553
No 354
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.52 E-value=0.00037 Score=81.18 Aligned_cols=138 Identities=22% Similarity=0.284 Sum_probs=84.8
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHH-------------------HHHHH-------
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS-------------------VARRV------- 69 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~-------------------~a~rv------- 69 (704)
.+..|+.+.|+|+.||||||++..+.....+..|..-+--.+....... +.+.+
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~ 574 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEA 574 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCC
Confidence 4678999999999999999999988776655443322222222111111 11100
Q ss_pred --------HHHhCCc---cCceeeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHH
Q 005291 70 --------AQELGVR---LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLG 138 (704)
Q Consensus 70 --------a~~~~~~---vg~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~ 138 (704)
++..|.. .....||.....+.-. -.+.|.-.|..+....+.++.++|+||+- ..+|...-..
T Consensus 575 ~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~------~LSGGQrQrlalARaLl~~P~ILlLDEaT-SaLD~~sE~~ 647 (709)
T COG2274 575 TDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGA------NLSGGQRQRLALARALLSKPKILLLDEAT-SALDPETEAI 647 (709)
T ss_pred CHHHHHHHHHHhCcHHHHHhcccccccccccCCC------CCCHHHHHHHHHHHHhccCCCEEEEeCcc-cccCHhHHHH
Confidence 0000000 0011122221111110 15778888888888899999999999998 7899888777
Q ss_pred HHHHHHHHhccCcEEEEEecCCC
Q 005291 139 LVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 139 llk~l~~~~~~~~kiI~~SATl~ 161 (704)
+...+.+... +..+|++++-+.
T Consensus 648 I~~~L~~~~~-~~T~I~IaHRl~ 669 (709)
T COG2274 648 ILQNLLQILQ-GRTVIIIAHRLS 669 (709)
T ss_pred HHHHHHHHhc-CCeEEEEEccch
Confidence 7777777665 678888887654
No 355
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.52 E-value=0.00094 Score=78.92 Aligned_cols=122 Identities=20% Similarity=0.194 Sum_probs=79.1
Q ss_pred CCchHHHHHHHHHhcc-CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceee
Q 005291 4 LPILQYEETIVETVEQ-NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (704)
Q Consensus 4 LPi~~~~~~il~~l~~-~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg 82 (704)
..+.+-|.+.+..+.. +++++|+|++|+||||++..+..... ..+..|+.+.|+-.++..+. +..|...
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~-~~g~~V~~~ApTg~Aa~~L~----~~~g~~a----- 420 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWE-AAGYRVIGAALSGKAAEGLQ----AESGIES----- 420 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHH-hCCCeEEEEeCcHHHHHHHH----hccCCce-----
Confidence 3466778888887766 58999999999999998887654332 23568888999877765543 2222210
Q ss_pred eeeecccccCcccceEEcchHHHHHHH-HhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEe
Q 005291 83 YAIRFEDRTSERTLIKYLTDGVLLREI-LSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (704)
Q Consensus 83 ~~~~~~~~~~~~~~I~~~T~g~Ll~~l-~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~S 157 (704)
.|-..++..+ .....+...++|||||+- +++...+..+++.... .+.++|++.
T Consensus 421 -----------------~Ti~~~~~~~~~~~~~~~~~~llIvDEas--Mv~~~~~~~Ll~~~~~---~~~kliLVG 474 (744)
T TIGR02768 421 -----------------RTLASLEYAWANGRDLLSDKDVLVIDEAG--MVGSRQMARVLKEAEE---AGAKVVLVG 474 (744)
T ss_pred -----------------eeHHHHHhhhccCcccCCCCcEEEEECcc--cCCHHHHHHHHHHHHh---cCCEEEEEC
Confidence 1212221111 112246688999999996 7888777666554432 267888776
No 356
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.51 E-value=0.00017 Score=74.34 Aligned_cols=64 Identities=19% Similarity=0.185 Sum_probs=44.0
Q ss_pred ceEEcchHHHHHHHHhCCCC------CCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh-ccCcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDL------SPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASKLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l------~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~-~~~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+ .+.+++++||.- ..+|......+.+.+.... ..+..+|+.|..+
T Consensus 131 ~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 201 (258)
T PRK13548 131 DYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPT-SALDLAHQHHVLRLARQLAHERGLAVIVVLHDL 201 (258)
T ss_pred CcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 34456777777776666555 478999999998 7888887666555555443 2256677777654
No 357
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.51 E-value=0.00014 Score=84.06 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=47.5
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.|...|..+....+.+.+++|+||+- ..+|......+.+.+....+ +..+|+.|+-++
T Consensus 452 LSgGq~qRi~lARall~~~~illlDEpt-s~LD~~~~~~i~~~l~~~~~-~~tii~itH~~~ 511 (569)
T PRK10789 452 LSGGQKQRISIARALLLNAEILILDDAL-SAVDGRTEHQILHNLRQWGE-GRTVIISAHRLS 511 (569)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHhC-CCEEEEEecchh
Confidence 5778888888888889999999999998 78999887777777666544 677777776653
No 358
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.51 E-value=0.00077 Score=68.27 Aligned_cols=64 Identities=25% Similarity=0.242 Sum_probs=46.0
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+...... +..+|+.|.-+
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 186 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPT-TDLDVVNQARVLKLLRELRQLFGTGILLITHDL 186 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCc-cccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 34456788887777777778899999999998 789988877666666554432 45666666543
No 359
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.51 E-value=9.2e-05 Score=79.91 Aligned_cols=64 Identities=23% Similarity=0.246 Sum_probs=46.6
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
.+.-.+.|+..|..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|.-+
T Consensus 125 ~~~~LSgGq~qRvalaraL~~~p~llLLDEPt-s~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~ 189 (352)
T PRK11144 125 YPGSLSGGEKQRVAIGRALLTAPELLLMDEPL-ASLDLPRKRELLPYLERLAREINIPILYVSHSL 189 (352)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH
Confidence 34456788888888777788899999999998 789988766665555544332 46677777654
No 360
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.50 E-value=0.0004 Score=80.21 Aligned_cols=144 Identities=19% Similarity=0.240 Sum_probs=83.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHH-HHHH---HHH---hCCccCceeeeee---
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSV-ARRV---AQE---LGVRLGEEVGYAI--- 85 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~-a~rv---a~~---~~~~vg~~vg~~~--- 85 (704)
.+..|+.+.|+||+||||||++..++.......|...+--.+.+....+. .+.+ .++ ++..+.+.+.+..
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~ 441 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNA 441 (574)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCcc
Confidence 45689999999999999999999888876655443222222222111100 0000 000 0000000000000
Q ss_pred ------------ecc---cc-cCccc----ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHH
Q 005291 86 ------------RFE---DR-TSERT----LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (704)
Q Consensus 86 ------------~~~---~~-~~~~~----~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~ 145 (704)
..+ .. ..-+| .-.-.+.|...|.......+.+.+++|+||+- ..+|.+....+.+.+..
T Consensus 442 ~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~t-s~lD~~t~~~i~~~l~~ 520 (574)
T PRK11160 442 SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPT-EGLDAETERQILELLAE 520 (574)
T ss_pred CHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHH
Confidence 000 00 00011 12236788888888888889999999999998 78999887777777666
Q ss_pred HhccCcEEEEEecCCC
Q 005291 146 LRASKLKILITSATLD 161 (704)
Q Consensus 146 ~~~~~~kiI~~SATl~ 161 (704)
..+ +..+|+.|.-++
T Consensus 521 ~~~-~~tviiitHr~~ 535 (574)
T PRK11160 521 HAQ-NKTVLMITHRLT 535 (574)
T ss_pred HcC-CCEEEEEecChh
Confidence 554 677777777653
No 361
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00024 Score=77.50 Aligned_cols=142 Identities=20% Similarity=0.191 Sum_probs=83.7
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHH-HHHHH--------------HHHhCCcc---
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS-VARRV--------------AQELGVRL--- 77 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~-~a~rv--------------a~~~~~~v--- 77 (704)
.+++|+-+.|.|+|||||||++..+......++|...+--.|.+.+-.+ +.+.+ .+.+...-
T Consensus 360 ~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~A 439 (573)
T COG4987 360 TLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDA 439 (573)
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCC
Confidence 4678999999999999999999887766555544433333333222211 11111 11110000
Q ss_pred --------Cceeeeeee-------cccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHH
Q 005291 78 --------GEEVGYAIR-------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (704)
Q Consensus 78 --------g~~vg~~~~-------~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~ 142 (704)
-+.||-.-. .+....+..+ =.+.|...|..+....|++-.++++||..| ++|...-..++..
T Consensus 440 sDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~--~LSGGE~rRLAlAR~LL~dapl~lLDEPTe-gLD~~TE~~vL~l 516 (573)
T COG4987 440 SDEELWAALQQVGLEKLLESAPDGLNTWLGEGGR--RLSGGERRRLALARALLHDAPLWLLDEPTE-GLDPITERQVLAL 516 (573)
T ss_pred CHHHHHHHHHHcCHHHHHHhChhhhhchhccCCC--cCCchHHHHHHHHHHHHcCCCeEEecCCcc-cCChhhHHHHHHH
Confidence 000110000 0000000000 035566666666666788899999999995 8998888888888
Q ss_pred HHHHhccCcEEEEEecCCC
Q 005291 143 LVNLRASKLKILITSATLD 161 (704)
Q Consensus 143 l~~~~~~~~kiI~~SATl~ 161 (704)
+..... +..+|+.|+-+-
T Consensus 517 l~~~~~-~kTll~vTHrL~ 534 (573)
T COG4987 517 LFEHAE-GKTLLMVTHRLR 534 (573)
T ss_pred HHHHhc-CCeEEEEecccc
Confidence 888776 888899888763
No 362
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.50 E-value=9e-05 Score=76.19 Aligned_cols=62 Identities=16% Similarity=0.300 Sum_probs=45.8
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~ 161 (704)
-.+.|...+..+....+.+.+++|+||+- ..+|......+.+.+...... +..+|+.|..++
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 208 (252)
T TIGR03005 146 QLSGGQQQRVAIARALAMRPKVMLFDEVT-SALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG 208 (252)
T ss_pred hcCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 36777777777777778899999999998 789988776666655554332 567888877654
No 363
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.50 E-value=0.00025 Score=78.03 Aligned_cols=63 Identities=21% Similarity=0.347 Sum_probs=45.0
Q ss_pred chHHHHHHHHHhccC-CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHH
Q 005291 6 ILQYEETIVETVEQN-PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV 69 (704)
Q Consensus 6 i~~~~~~il~~l~~~-~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rv 69 (704)
+.+.|.+++...... ...+|.||+|+|||+.+..++...- ..+.+|+|..|+.+++..+.+|+
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlv-k~~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLV-KQKKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHH-HcCCeEEEEcCchHHHHHHHHHh
Confidence 345566666665555 7899999999999943333333322 23679999999999998888864
No 364
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00027 Score=74.00 Aligned_cols=66 Identities=23% Similarity=0.285 Sum_probs=47.6
Q ss_pred cceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCC
Q 005291 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (704)
Q Consensus 95 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~ 161 (704)
..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......++..+...... +..+|+.|.-++
T Consensus 137 ~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt-~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~ 203 (283)
T PRK13636 137 KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPT-AGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID 203 (283)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 345557888888888777788899999999998 789988776665555544332 566777766543
No 365
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.49 E-value=0.0011 Score=68.31 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=42.3
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.-.+.|+..+..+....+.+.+++++||.- ..+|......+...+......+..+|+.|.-+
T Consensus 138 ~~LS~G~~qrv~laral~~~p~illlDEPt-s~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~ 199 (255)
T cd03236 138 DQLSGGELQRVAIAAALARDADFYFFDEPS-SYLDIKQRLNAARLIRELAEDDNYVLVVEHDL 199 (255)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 345677776666666677888999999998 78998876655554444333245677766654
No 366
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.49 E-value=0.00013 Score=74.23 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=46.4
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+...... +..+|+.|.-+
T Consensus 150 ~~~~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 214 (236)
T cd03267 150 PVRQLSLGQRMRAEIAAALLHEPEILFLDEPT-IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM 214 (236)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC-CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 34447788887777777788899999999998 799998877776666654332 45666666544
No 367
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00011 Score=76.38 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=47.2
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.-.+.|+..+..+....+.+.+++|+||+- ..+|......++..+......+..+|+.|..++
T Consensus 133 ~~~~LSgG~~qrl~laraL~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~ 197 (271)
T PRK13638 133 PIQCLSHGQKKRVAIAGALVLQARYLLLDEPT-AGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID 197 (271)
T ss_pred CchhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 34456788888887777788899999999998 789988766666655554333566777766543
No 368
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=0.0002 Score=73.72 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=45.7
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+...... +..+|+.|.-+
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~ 214 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPA-AGLNPKETKELDELIAELRNEHNVTVLLIEHDM 214 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-cCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 346777777777777788899999999998 789988777766666554432 56777777654
No 369
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.48 E-value=0.0011 Score=73.65 Aligned_cols=126 Identities=19% Similarity=0.260 Sum_probs=74.7
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc-EE--EEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG-II--GVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSER 94 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~-~i--lv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~ 94 (704)
..++++.++||||+||||.+..+........+. +| +-.-+-|..+.+..+.+++.+|..+. ..
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~--~~------------ 319 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVH--AV------------ 319 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCee--cc------------
Confidence 357899999999999999888777655333332 33 23456678888888888888775321 00
Q ss_pred cceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHh
Q 005291 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVS 166 (704)
Q Consensus 95 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~ 166 (704)
-+..-+...+ ..+.+.++++||.+= |+.....+...+..+.....+.-.+++++||.....+.
T Consensus 320 -----~~~~Dl~~aL---~~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~ 382 (484)
T PRK06995 320 -----KDAADLRLAL---SELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLN 382 (484)
T ss_pred -----CCchhHHHHH---HhccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHH
Confidence 0111111112 246678999999986 44333223333333322221133788999998766544
No 370
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00071 Score=73.91 Aligned_cols=64 Identities=27% Similarity=0.301 Sum_probs=48.0
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+..... .+..+|+.|..++
T Consensus 162 ~~~LSgGq~QRv~LArAL~~~P~iLLLDEPt-s~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~ 226 (400)
T PRK10070 162 PDELSGGMRQRVGLARALAINPDILLMDEAF-SALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD 226 (400)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCC-ccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 4457888888888777788899999999998 78999887776666655432 2567777777654
No 371
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.47 E-value=6.3e-05 Score=81.54 Aligned_cols=61 Identities=16% Similarity=0.243 Sum_probs=45.5
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl 160 (704)
-.+.|+..|..+....+.+.+++++||.- ..+|......+...+..... .+..+|+.|.-+
T Consensus 144 ~LSgGq~QRVaLARaL~~~P~llLLDEP~-s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~ 205 (375)
T PRK09452 144 QLSGGQQQRVAIARAVVNKPKVLLLDESL-SALDYKLRKQMQNELKALQRKLGITFVFVTHDQ 205 (375)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46788888888887788899999999998 78998876666555555433 256777776654
No 372
>PRK08181 transposase; Validated
Probab=97.47 E-value=0.0014 Score=67.59 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=64.8
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCccc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~ 95 (704)
.+..++++++.||+|+|||.++..+...... .+..++++.- ..+..+ +..... .
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~-~g~~v~f~~~-~~L~~~----l~~a~~------------------~-- 155 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLALIE-NGWRVLFTRT-TDLVQK----LQVARR------------------E-- 155 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHHHHHH-cCCceeeeeH-HHHHHH----HHHHHh------------------C--
Confidence 4567889999999999999877766554332 2445554432 222222 211100 0
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhcccCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSN 171 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~~~~ 171 (704)
.+...+++ .+.++++|||||++....+ +.....+-.++..+..+. -+++|..++...+...|++
T Consensus 156 ----~~~~~~l~------~l~~~dLLIIDDlg~~~~~-~~~~~~Lf~lin~R~~~~-s~IiTSN~~~~~w~~~~~D 219 (269)
T PRK08181 156 ----LQLESAIA------KLDKFDLLILDDLAYVTKD-QAETSVLFELISARYERR-SILITANQPFGEWNRVFPD 219 (269)
T ss_pred ----CcHHHHHH------HHhcCCEEEEeccccccCC-HHHHHHHHHHHHHHHhCC-CEEEEcCCCHHHHHHhcCC
Confidence 01112222 2356899999999843333 333334444555444243 3555556666667776654
No 373
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.47 E-value=0.00047 Score=69.63 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=46.1
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+...... +..+|+.|.-+
T Consensus 143 ~~~LS~G~~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 206 (228)
T cd03257 143 PHELSGGQRQRVAIARALALNPKLLIADEPT-SALDVSVQAQILDLLKKLQEELGLTLLFITHDL 206 (228)
T ss_pred chhcCHHHHHHHHHHHHHhcCCCEEEecCCC-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3446788888877777788899999999998 789988777666666554432 46677776654
No 374
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.46 E-value=0.00033 Score=70.52 Aligned_cols=66 Identities=18% Similarity=0.319 Sum_probs=51.5
Q ss_pred chHHHHHHHHHhccCCE-EEEEcCCCCcHHHHHHHHHHhc-------CCCCCcEEEEcchhhHHHHHHHHHHHH
Q 005291 6 ILQYEETIVETVEQNPV-VVVIGETGSGKSTQLSQILHRH-------GYTKSGIIGVTQPRRVAAVSVARRVAQ 71 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~-vii~gpTGsGKTt~l~~~l~~~-------~~~~~~~ilv~~P~r~la~~~a~rva~ 71 (704)
+.+.|.+.+..+..... .+|.||+|+|||+.+..++... ....+.+|+++.|+..++..+.+++.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 34678888888887776 9999999999998777766665 135677999999999999999999876
No 375
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.46 E-value=0.00021 Score=75.04 Aligned_cols=65 Identities=11% Similarity=0.154 Sum_probs=46.9
Q ss_pred cceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 95 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
..+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+......+..+|+.|.-+
T Consensus 141 ~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt-~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~ 205 (287)
T PRK13641 141 KSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA-AGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM 205 (287)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 344557888888888877788899999999998 78888776666555554433356667766544
No 376
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.45 E-value=0.001 Score=71.77 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=47.3
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~ 161 (704)
..-.+.|+..|..+....+.+.+++++||.- ..+|......+...+.+... .+..+|+.|.-++
T Consensus 132 ~~~LSgGq~QRvaLARaL~~~P~llLLDEP~-s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ 196 (353)
T TIGR03265 132 PGQLSGGQQQRVALARALATSPGLLLLDEPL-SALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE 196 (353)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 3446888888888888888999999999998 78998876666555554433 2567787776543
No 377
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.45 E-value=0.00036 Score=72.51 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=46.7
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... +..+|+.|.-++
T Consensus 139 LS~G~~qrl~LaRall~~p~illlDEpt-s~LD~~~~~~l~~~l~~~~~-~~tii~isH~~~ 198 (275)
T cd03289 139 LSHGHKQLMCLARSVLSKAKILLLDEPS-AHLDPITYQVIRKTLKQAFA-DCTVILSEHRIE 198 (275)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEECCHH
Confidence 6888888888888889999999999998 78888877666666655443 677777777653
No 378
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.45 E-value=0.00015 Score=77.55 Aligned_cols=63 Identities=21% Similarity=0.239 Sum_probs=48.1
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~ 161 (704)
.-.+.|+..|..+....+.+.++||+||.- ..+|......+++.+..... .+..+|+.|.-++
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPt-s~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~ 223 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPV-SALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA 223 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 346888888888887788999999999998 78998877666665555433 2678888877654
No 379
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.44 E-value=0.00019 Score=82.41 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=48.1
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
-.+.|...|..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|.-++
T Consensus 454 ~LSgGq~qrl~lARall~~~~ililDEpt-s~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~ 515 (544)
T TIGR01842 454 TLSGGQRQRIALARALYGDPKLVVLDEPN-SNLDEEGEQALANAIKALKARGITVVVITHRPS 515 (544)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH
Confidence 36788888888888889999999999998 689988777766666555422567778777654
No 380
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.44 E-value=0.00063 Score=79.04 Aligned_cols=59 Identities=19% Similarity=0.266 Sum_probs=48.5
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.|...|..+....+.+.+++|+||+- ..+|.+.-..+.+.+....+ +..+|++|+-+
T Consensus 477 LSGGqrQRialARaLl~~~~illlDEpt-s~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~ 535 (592)
T PRK10790 477 LSVGQKQLLALARVLVQTPQILILDEAT-ANIDSGTEQAIQQALAAVRE-HTTLVVIAHRL 535 (592)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHhC-CCEEEEEecch
Confidence 5788888888888888999999999998 78999887777777766655 67888888765
No 381
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.44 E-value=0.0011 Score=69.11 Aligned_cols=139 Identities=17% Similarity=0.212 Sum_probs=78.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE-----EEEcchhhHH-HHHHHHHHH--------------HHhCCc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-----IGVTQPRRVA-AVSVARRVA--------------QELGVR 76 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~-----ilv~~P~r~l-a~~~a~rva--------------~~~~~~ 76 (704)
+..|+.+.|+||+||||||++..+........|.. +.++.....+ ...+.+.+. +..+..
T Consensus 60 i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~ 139 (282)
T cd03291 60 IEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLE 139 (282)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCH
Confidence 56899999999999999999998887665544321 2222111100 001111110 000000
Q ss_pred cCceeeeeeecccc--cCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEE
Q 005291 77 LGEEVGYAIRFEDR--TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (704)
Q Consensus 77 vg~~vg~~~~~~~~--~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI 154 (704)
..+. ..... ..-...+.-.+.|+..+..+....+.+.+++|+||.- ..+|......++..++.....+..+|
T Consensus 140 --~~l~---~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt-~gLD~~~~~~l~~~ll~~~~~~~tIi 213 (282)
T cd03291 140 --EDIT---KFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF-GYLDVFTEKEIFESCVCKLMANKTRI 213 (282)
T ss_pred --HHHH---hccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCC-ccCCHHHHHHHHHHHHHHhhCCCEEE
Confidence 0000 00000 0001123356889988888888888899999999998 78888776665554433222256677
Q ss_pred EEecCCC
Q 005291 155 ITSATLD 161 (704)
Q Consensus 155 ~~SATl~ 161 (704)
+.|..++
T Consensus 214 iisH~~~ 220 (282)
T cd03291 214 LVTSKME 220 (282)
T ss_pred EEeCChH
Confidence 7776654
No 382
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.44 E-value=0.0006 Score=70.16 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=46.0
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl 160 (704)
.+.-.+.|...+..+....+.+.+++|+||+- ..+|......+...+..... .+..+|+.|..+
T Consensus 137 ~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt-~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~ 201 (254)
T PRK10418 137 YPFEMSGGMLQRMMIALALLCEAPFIIADEPT-TDLDVVAQARILDLLESIVQKRALGMLLVTHDM 201 (254)
T ss_pred CCcccCHHHHHHHHHHHHHhcCCCEEEEeCCC-cccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 34456888888888777788899999999998 78888776665555544332 146677777654
No 383
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.44 E-value=0.0091 Score=77.44 Aligned_cols=246 Identities=13% Similarity=0.138 Sum_probs=132.7
Q ss_pred CCCchHHHHHHHHHhcc--CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCce
Q 005291 3 NLPILQYEETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (704)
Q Consensus 3 ~LPi~~~~~~il~~l~~--~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~ 80 (704)
.+++..-|.+.+..+.. +++.+|.|+.|+||||.+..++.... ..+..|..+.|+..++..+.+.. |..-. +
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~-~~G~~V~~lAPTgrAA~~L~e~~----g~~A~-T 500 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLAS-EQGYEIQIITAGSLSAQELRQKI----PRLAS-T 500 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHh----cchhh-h
Confidence 35666778888887765 48999999999999998876665432 34668889999987776655432 22100 0
Q ss_pred eeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 81 vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+. ++-..... .....|...++ ..+..+..-++|||||+- +++...+..+++.... .+.++|++.=+-
T Consensus 501 i~---~~l~~l~~--~~~~~tv~~fl---~~~~~l~~~~vlIVDEAs--Ml~~~~~~~Ll~~a~~---~garvVlvGD~~ 567 (1960)
T TIGR02760 501 FI---TWVKNLFN--DDQDHTVQGLL---DKSSPFSNKDIFVVDEAN--KLSNNELLKLIDKAEQ---HNSKLILLNDSA 567 (1960)
T ss_pred HH---HHHHhhcc--cccchhHHHhh---cccCCCCCCCEEEEECCC--CCCHHHHHHHHHHHhh---cCCEEEEEcChh
Confidence 00 00000000 00011211222 122345678999999997 7888877777665432 378888876442
Q ss_pred --Ch----HHHhcccC-CCCccccCC---CcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHH
Q 005291 161 --DG----EKVSKFFS-NCPTLNVPG---KLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLV 230 (704)
Q Consensus 161 --~~----~~~~~~~~-~~~~i~i~~---~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~ 230 (704)
++ ..|..+.. +.+...... ..-++ ........+......+..+.+.. .....+|+.++.++...+.
T Consensus 568 QL~sV~aG~~f~~L~~~gv~t~~l~~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~--~r~~tliv~~t~~dr~~Ln 643 (1960)
T TIGR02760 568 QRQGMSAGSAIDLLKEGGVTTYAWVDTKQQKASV--EISEAVDKLRVDYIASAWLDLTP--DRQNSQVLATTHREQQDLT 643 (1960)
T ss_pred hcCccccchHHHHHHHCCCcEEEeecccccCcce--eeeccCchHHHHHHHHHHHhccc--ccCceEEEcCCcHHHHHHH
Confidence 21 22332221 233333221 11222 12211222222333333333322 3446899999999999999
Q ss_pred HHHHHHhhhcCCCCCCCeEEEeccC-CCCHHHHhhccCCCCCC
Q 005291 231 SKLEDKIRSLDEGSCMDAVILPLHG-SLPPEMQVRVFSPPPPN 272 (704)
Q Consensus 231 ~~L~~~~~~~~~~~~~~~~v~~lh~-~l~~~~r~~v~~~~~~g 272 (704)
..++..+.....-......+..|-. .|+..++... ..|+.|
T Consensus 644 ~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 644 QIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred HHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 9999887432221112344444432 4666665532 344443
No 384
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.43 E-value=0.00012 Score=79.26 Aligned_cols=63 Identities=24% Similarity=0.289 Sum_probs=46.3
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~ 161 (704)
.-.+.|+..+..+....+.+.+++++||.- ..+|......+++.+...... +..+|+.|.-++
T Consensus 130 ~~LSgGqkqRvalAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~ 193 (354)
T TIGR02142 130 GRLSGGEKQRVAIGRALLSSPRLLLMDEPL-AALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ 193 (354)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCCC-cCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 346778888887777788899999999998 789998877766666554432 466777776543
No 385
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.43 E-value=0.0009 Score=78.63 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=87.6
Q ss_pred cchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccC----CC
Q 005291 194 TSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFS----PP 269 (704)
Q Consensus 194 ~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~----~~ 269 (704)
.+|.....+.+..+.. .+|.+|||+++.+..+.+++.|.... +..++ .+|..+ +.++++ .|
T Consensus 517 ~~~~~~~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~---------~~~ll-~Q~~~~---~~~ll~~f~~~~ 581 (697)
T PRK11747 517 EAHTAEMAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRDL---------RLMLL-VQGDQP---RQRLLEKHKKRV 581 (697)
T ss_pred HHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhc---------CCcEE-EeCCch---HHHHHHHHHHHh
Confidence 3566677777777765 45568999999999999999887531 22232 345433 344443 34
Q ss_pred CCCCcEEEEEcccccccccCCC--eEEEEeCCccccccccCC----------CCccccc--cccccHHhHHhhccccCCC
Q 005291 270 PPNCRRFIVSTNIAETSLTVDG--VVYVIDCGYVKQRQYNPS----------SGMYSLD--VVQISKVQANQRVGRAGRT 335 (704)
Q Consensus 270 ~~g~~kIlvaTniae~gidip~--v~~VId~g~~k~~~~~~~----------~g~~~l~--~~~iS~~~~~QR~GRaGR~ 335 (704)
..|...|+++|.....|||+|| .+.||-.|++-..--||. .|-..+. ..|.....+.|-+||.=|.
T Consensus 582 ~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs 661 (697)
T PRK11747 582 DEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRS 661 (697)
T ss_pred ccCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcccccc
Confidence 4567789999999999999987 788888787654222221 1111111 1133344578999999997
Q ss_pred C--CceEEEe
Q 005291 336 R--PGKCYRL 343 (704)
Q Consensus 336 ~--~G~c~~L 343 (704)
. .|..+.|
T Consensus 662 ~~D~G~i~il 671 (697)
T PRK11747 662 EQDRGRVTIL 671 (697)
T ss_pred CCceEEEEEE
Confidence 3 4766655
No 386
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.43 E-value=0.00073 Score=80.10 Aligned_cols=142 Identities=25% Similarity=0.268 Sum_probs=80.8
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHH-HHHHHHHH---HHh---CCccCceeeeeee--
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRVA---QEL---GVRLGEEVGYAIR-- 86 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la-~~~a~rva---~~~---~~~vg~~vg~~~~-- 86 (704)
.+.+|+.+.|+||+||||||++..++......+|...+--.|.+..- .+..++++ ++. ...+.+.+.|...
T Consensus 503 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~ 582 (711)
T TIGR00958 503 TLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDT 582 (711)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCC
Confidence 45689999999999999999999888876665443333334433221 11111110 000 0000000000000
Q ss_pred ----------------cccccC--cccce----EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHH
Q 005291 87 ----------------FEDRTS--ERTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (704)
Q Consensus 87 ----------------~~~~~~--~~~~I----~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~ 144 (704)
+-.... -++.+ .-.+.|...|..+....+++.+++|+||+- ..+|.+.-..+.+ .
T Consensus 583 ~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpT-SaLD~~te~~i~~--~ 659 (711)
T TIGR00958 583 PDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEAT-SALDAECEQLLQE--S 659 (711)
T ss_pred CHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccc-cccCHHHHHHHHH--h
Confidence 000000 01111 125788888888888889999999999998 6888876555444 2
Q ss_pred HHhccCcEEEEEecCCC
Q 005291 145 NLRASKLKILITSATLD 161 (704)
Q Consensus 145 ~~~~~~~kiI~~SATl~ 161 (704)
...+ +..+|+.|+-++
T Consensus 660 ~~~~-~~TvIiItHrl~ 675 (711)
T TIGR00958 660 RSRA-SRTVLLIAHRLS 675 (711)
T ss_pred hccC-CCeEEEEeccHH
Confidence 2233 677888887764
No 387
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.43 E-value=0.00012 Score=74.51 Aligned_cols=63 Identities=17% Similarity=0.250 Sum_probs=46.4
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++++||.. ..+|......+...+...... +..+|+.|.-+
T Consensus 127 ~~~LS~G~~qrl~laral~~~p~llllDEPt-~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~ 190 (235)
T cd03299 127 PETLSGGEQQRVAIARALVVNPKILLLDEPF-SALDVRTKEKLREELKKIRKEFGVTVLHVTHDF 190 (235)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEECCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 3446788888887777788899999999998 789988776666655554332 56777777654
No 388
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.43 E-value=0.001 Score=76.98 Aligned_cols=59 Identities=24% Similarity=0.251 Sum_probs=49.0
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.|...|..+....+.+.+++++||+- ..+|.+....+.+.+....+ +..+|+.|+.+
T Consensus 470 LSgGqrQRiaLARall~~~~illLDEpt-s~LD~~~~~~i~~~L~~~~~-~~tiIiitH~~ 528 (571)
T TIGR02203 470 LSGGQRQRLAIARALLKDAPILILDEAT-SALDNESERLVQAALERLMQ-GRTTLVIAHRL 528 (571)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHHhC-CCEEEEEehhh
Confidence 6888888888888889999999999998 78999888887777776654 77788887765
No 389
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.43 E-value=0.0015 Score=67.49 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=46.1
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+...... +..+|+.|.-+
T Consensus 148 ~~~~LS~Gq~qrl~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~ 212 (258)
T PRK11701 148 LPTTFSGGMQQRLQIARNLVTHPRLVFMDEPT-GGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL 212 (258)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 34456788888877777788899999999998 789988776666655544332 45666766654
No 390
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.43 E-value=0.00027 Score=80.13 Aligned_cols=143 Identities=19% Similarity=0.207 Sum_probs=81.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhH-HHHHHHHHHH---HHh------------CCccC
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRV-AAVSVARRVA---QEL------------GVRLG 78 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~-la~~~a~rva---~~~------------~~~vg 78 (704)
.+.+|+.+.|+||+||||||++..+........| .|.+ ..+... ......+.++ +.. +..+.
T Consensus 25 ~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G-~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 103 (490)
T PRK10938 25 TLNAGDSWAFVGANGSGKSALARALAGELPLLSG-ERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTA 103 (490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCc-eEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHH
Confidence 4578999999999999999999988876655443 3332 211100 0001111111 000 00111
Q ss_pred ceeeeeeecccc-----------cCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh
Q 005291 79 EEVGYAIRFEDR-----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (704)
Q Consensus 79 ~~vg~~~~~~~~-----------~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~ 147 (704)
..+......... ...+..+.-.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+....
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~ 182 (490)
T PRK10938 104 EIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPF-DGLDVASRQQLAELLASLH 182 (490)
T ss_pred HhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHH
Confidence 100000000000 0012344557788888887777788899999999998 7899887777666665544
Q ss_pred ccCcEEEEEecCC
Q 005291 148 ASKLKILITSATL 160 (704)
Q Consensus 148 ~~~~kiI~~SATl 160 (704)
..+..+|+.|..+
T Consensus 183 ~~g~tvii~tH~~ 195 (490)
T PRK10938 183 QSGITLVLVLNRF 195 (490)
T ss_pred hcCCeEEEEeCCH
Confidence 3356677776654
No 391
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.004 Score=58.30 Aligned_cols=182 Identities=23% Similarity=0.315 Sum_probs=98.7
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc---chhhHHHHHHHHH--H-HHHhC-------------Cc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT---QPRRVAAVSVARR--V-AQELG-------------VR 76 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~---~P~r~la~~~a~r--v-a~~~~-------------~~ 76 (704)
.+..|+++.|+|+.||||||++..+........+....-. +|+.....+-++| + ..+.| ..
T Consensus 28 ~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VS 107 (258)
T COG4107 28 DLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVS 107 (258)
T ss_pred eecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeec
Confidence 4568999999999999999999888777665544433332 4554444444443 1 12222 12
Q ss_pred cCceeeee-----------eeccc------ccCcccce----EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHH
Q 005291 77 LGEEVGYA-----------IRFED------RTSERTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI 135 (704)
Q Consensus 77 vg~~vg~~-----------~~~~~------~~~~~~~I----~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~ 135 (704)
.|..+|.. ++.+. -..+..+| .-.+.||-.|.-+.......+.+|++||.. -.+|...
T Consensus 108 AG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPT-GGLDVSV 186 (258)
T COG4107 108 AGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPT-GGLDVSV 186 (258)
T ss_pred cCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCC-CCcchhh
Confidence 23333310 11000 00001111 113567777776777788899999999997 5666654
Q ss_pred ---HHHHHHHHHHHhccCcEEEEEecCCChHHHhcccCCCCccccCCCcCc--eeEEecCCCCcchHHHHHHH
Q 005291 136 ---LLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYP--VEILHSKERPTSYLESALKT 203 (704)
Q Consensus 136 ---l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~~~~~~~i~i~~~~~p--v~~~~~~~~~~~~~~~~~~~ 203 (704)
++.+++.+.... ++-+++.+..+.. .+.+.+...+--.|+..+ +......++...|-.-.+..
T Consensus 187 QARLLDllrgLv~~l--~la~viVTHDl~V---arLla~rlmvmk~g~vve~GLTDrvLDDP~hPYTQLLVSs 254 (258)
T COG4107 187 QARLLDLLRGLVREL--GLAVVIVTHDLAV---ARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYTQLLVSS 254 (258)
T ss_pred HHHHHHHHHHHHHhc--CceEEEEechhHH---HHHhhhcceeecCCCEeccccccccccCCCCchHHHHHHH
Confidence 555566665544 5778888777653 333333333333333222 12223344555564444433
No 392
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.42 E-value=0.00018 Score=81.93 Aligned_cols=142 Identities=20% Similarity=0.186 Sum_probs=78.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc-chhhH-HHHHHHH----HHHHHhC----CccCceeeeeee
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT-QPRRV-AAVSVAR----RVAQELG----VRLGEEVGYAIR 86 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~-~P~r~-la~~~a~----rva~~~~----~~vg~~vg~~~~ 86 (704)
+..|+.+.|+||+||||||++..+........ |.|.+- .+... ......+ .+.+... ..+.+.+.+...
T Consensus 34 i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 112 (510)
T PRK15439 34 LHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS-GTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP 112 (510)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc-eEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc
Confidence 56899999999999999999988877654433 333321 11000 0000000 0000000 000000000000
Q ss_pred cc----c-----------ccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCc
Q 005291 87 FE----D-----------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL 151 (704)
Q Consensus 87 ~~----~-----------~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~ 151 (704)
.. . ....+..+.-.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+......+.
T Consensus 113 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~g~ 191 (510)
T PRK15439 113 KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPT-ASLTPAETERLFSRIRELLAQGV 191 (510)
T ss_pred cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHCCC
Confidence 00 0 00012334456788888888777788899999999998 78998877666665555443356
Q ss_pred EEEEEecCC
Q 005291 152 KILITSATL 160 (704)
Q Consensus 152 kiI~~SATl 160 (704)
.+|+.|..+
T Consensus 192 tiiivtHd~ 200 (510)
T PRK15439 192 GIVFISHKL 200 (510)
T ss_pred EEEEEeCCH
Confidence 677766654
No 393
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00053 Score=65.13 Aligned_cols=140 Identities=21% Similarity=0.211 Sum_probs=77.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc-chhhHHHHHHHHH---HHHHhCCccCceeeeeeeccc--
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT-QPRRVAAVSVARR---VAQELGVRLGEEVGYAIRFED-- 89 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~-~P~r~la~~~a~r---va~~~~~~vg~~vg~~~~~~~-- 89 (704)
.+..|+.+.|.||+|+||||++..+....... .+.|.+- .|......+.++. +....|.+...++-.+.+|-.
T Consensus 24 ~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~-~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~ 102 (209)
T COG4133 24 TLNAGEALQITGPNGAGKTTLLRILAGLLRPD-AGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRF 102 (209)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHcccCCC-CCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence 45789999999999999999999887766554 4455543 4443333222111 111111111000000000000
Q ss_pred ------------------ccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCc
Q 005291 90 ------------------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL 151 (704)
Q Consensus 90 ------------------~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~ 151 (704)
.--.+..+-+.+.|+-.|..+..-+++.-.+.|+||+- ..+|..-...+-..+......+-
T Consensus 103 ~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~-taLDk~g~a~l~~l~~~H~~~GG 181 (209)
T COG4133 103 HGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPF-TALDKEGVALLTALMAAHAAQGG 181 (209)
T ss_pred hCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcc-cccCHHHHHHHHHHHHHHhcCCC
Confidence 00123455567889888888887788889999999997 56766543332222333333234
Q ss_pred EEEEEe
Q 005291 152 KILITS 157 (704)
Q Consensus 152 kiI~~S 157 (704)
-||+.|
T Consensus 182 iVlltt 187 (209)
T COG4133 182 IVLLTT 187 (209)
T ss_pred EEEEec
Confidence 444443
No 394
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.42 E-value=6.4e-05 Score=81.15 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=47.7
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc--CcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS--KLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~--~~kiI~~SATl~ 161 (704)
+.-.+.|+..|..+......+.+++++||.- ..+|......+...+...... +..+|+.|..++
T Consensus 135 ~~~LSgGq~QRvaLARAL~~~P~llLLDEP~-s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ 200 (362)
T TIGR03258 135 PAQLSGGMQQRIAIARAIAIEPDVLLLDEPL-SALDANIRANMREEIAALHEELPELTILCVTHDQD 200 (362)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCcc-ccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 4457888888888888888999999999998 789998777666665554432 466777766543
No 395
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.41 E-value=0.0026 Score=64.68 Aligned_cols=116 Identities=16% Similarity=0.254 Sum_probs=69.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccceEEc
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKYL 100 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I~~~ 100 (704)
..+++.|++|+|||+++..+...... .+..++++. +.++...+...+. . .. .
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~-~g~~v~~it-----~~~l~~~l~~~~~-~---------------~~------~ 151 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLL-RGKSVLIIT-----VADIMSAMKDTFS-N---------------SE------T 151 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEE-----HHHHHHHHHHHHh-h---------------cc------c
Confidence 57899999999999888777665543 244555542 1222233322211 0 00 1
Q ss_pred chHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhcccCC
Q 005291 101 TDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSN 171 (704)
Q Consensus 101 T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~~~~ 171 (704)
+...+++. +.++++|||||++.. ..+++-..++-.++..|..+.+-+++|.-++.+.+.+++++
T Consensus 152 ~~~~~l~~------l~~~dlLvIDDig~~-~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ 215 (244)
T PRK07952 152 SEEQLLND------LSNVDLLVIDEIGVQ-TESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGE 215 (244)
T ss_pred cHHHHHHH------hccCCEEEEeCCCCC-CCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhCh
Confidence 22223222 457899999999953 36667667777777766533455566667777777777754
No 396
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.41 E-value=7.5e-05 Score=80.36 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=46.0
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
.-.+.|+..|..+....+.+.+++++||.- ..+|......+...+...... +..+|+.|.-+
T Consensus 135 ~~LSgGq~QRVaLARaL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~ 197 (351)
T PRK11432 135 DQISGGQQQRVALARALILKPKVLLFDEPL-SNLDANLRRSMREKIRELQQQFNITSLYVTHDQ 197 (351)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 346888888888888888899999999997 789998876665555544331 56777776654
No 397
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.41 E-value=0.00026 Score=82.04 Aligned_cols=60 Identities=23% Similarity=0.259 Sum_probs=47.7
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.|...|..+....+++.+++|+||+- ..+|.+....+.+.+....+ +..+|+.|+-++
T Consensus 477 LSgGq~Qrl~laRal~~~~~ililDEpt-s~lD~~~~~~i~~~l~~~~~-~~t~IiitH~~~ 536 (576)
T TIGR02204 477 LSGGQRQRIAIARAILKDAPILLLDEAT-SALDAESEQLVQQALETLMK-GRTTLIIAHRLA 536 (576)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCcc-cccCHHHHHHHHHHHHHHhC-CCEEEEEecchH
Confidence 6778888888888888999999999998 78898877776666666554 777888887653
No 398
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.41 E-value=0.00035 Score=75.80 Aligned_cols=63 Identities=25% Similarity=0.313 Sum_probs=47.8
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~ 161 (704)
.-.+.|+..+..+......+.+++++||+- ..+|......+.+.+...... +..+|+.|.-++
T Consensus 163 ~~LSgGq~QRV~LARALa~~P~ILLlDEPt-s~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~ 226 (382)
T TIGR03415 163 GELSGGMQQRVGLARAFAMDADILLMDEPF-SALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD 226 (382)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCC-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 346788888887777788899999999998 789998877776666655432 567788777654
No 399
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00029 Score=73.05 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=46.9
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~ 161 (704)
.+.-.+.|+..+..+....+.+.+++++||+- ..+|......+++.+..... .+..+|+.|.-++
T Consensus 140 ~~~~LS~Gq~qrv~laral~~~p~llllDEPt-~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~ 205 (265)
T PRK10253 140 SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPT-TWLDISHQIDLLELLSELNREKGYTLAAVLHDLN 205 (265)
T ss_pred CcccCChHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 44456778877777777788899999999998 78998877766666655433 1566777766543
No 400
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00025 Score=72.85 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=47.9
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... +..+|+.|..++
T Consensus 143 ~~~~LSgG~~qrv~laral~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~ 206 (250)
T PRK14247 143 PAGKLSGGQQQRLCIARALAFQPEVLLADEPT-ANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ 206 (250)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 34457888888888777788899999999998 78998877776666665543 566777766543
No 401
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.40 E-value=0.00046 Score=71.14 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=45.9
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... +..+|+.|..++
T Consensus 155 ~~LS~G~~qrl~laral~~~p~llllDEPt-~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~ 216 (257)
T cd03288 155 ENFSVGQRQLFCLARAFVRKSSILIMDEAT-ASIDMATENILQKVVMTAFA-DRTVVTIAHRVS 216 (257)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHhcC-CCEEEEEecChH
Confidence 346788888888777788899999999998 78888876665555544333 667777776654
No 402
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.40 E-value=0.0013 Score=68.23 Aligned_cols=63 Identities=22% Similarity=0.242 Sum_probs=45.1
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++++||+- ..+|......+++.+...... +..+|+.|..+
T Consensus 148 ~~~LSgGe~qrv~laral~~~p~illLDEPt-~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~ 211 (265)
T TIGR02769 148 PRQLSGGQLQRINIARALAVKPKLIVLDEAV-SNLDMVLQAVILELLRKLQQAFGTAYLFITHDL 211 (265)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 3446778888877777788899999999997 789888766655555544332 45677776654
No 403
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.0017 Score=66.98 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=46.3
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+..... +..+|+.|.-+
T Consensus 145 ~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~ 207 (258)
T PRK14241 145 PGGGLSGGQQQRLCIARAIAVEPDVLLMDEPC-SALDPISTLAIEDLINELKQ-DYTIVIVTHNM 207 (258)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH
Confidence 34457788888888777788899999999998 78998876666665555443 55667766654
No 404
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.00065 Score=73.80 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=47.2
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++++||.- ..+|......+...+...... +..+|+.|.-++
T Consensus 131 ~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt-s~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~ 195 (369)
T PRK11000 131 PKALSGGQRQRVAIGRTLVAEPSVFLLDEPL-SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (369)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 3447888888888888888999999999998 789988766665555544331 567777776543
No 405
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.37 E-value=0.00056 Score=79.20 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=47.5
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.|...|..+....+.+.+++|+||+- ..+|.+....+.+.+....+ +..+|+.|+-+
T Consensus 472 LSgGq~qrl~lARall~~p~ililDEpt-s~LD~~~~~~i~~~l~~~~~-~~tvI~isH~~ 530 (585)
T TIGR01192 472 LSGGERQRLAIARAILKNAPILVLDEAT-SALDVETEARVKNAIDALRK-NRTTFIIAHRL 530 (585)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCc-cCCCHHHHHHHHHHHHHHhC-CCEEEEEEcCh
Confidence 6788888888888889999999999998 78999887777666665544 67788877765
No 406
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.37 E-value=0.0012 Score=71.21 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=46.3
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
+.-.+.|+..|..+....+.+.+++++||.- ..+|......+.+.+.+.... +..+|+.|.-+
T Consensus 134 ~~~LSgGq~QRvalArAL~~~P~llLLDEP~-s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~ 197 (353)
T PRK10851 134 PAQLSGGQKQRVALARALAVEPQILLLDEPF-GALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ 197 (353)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3446788888888887788999999999998 789998766665555554432 46677766654
No 407
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.00025 Score=73.05 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=48.0
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+..... +..+|+.|..++
T Consensus 147 ~~~~LSgG~~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~ 210 (254)
T PRK14273 147 NALSLSGGQQQRLCIARTLAIEPNVILMDEPT-SALDPISTGKIEELIINLKE-SYTIIIVTHNMQ 210 (254)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-cccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 34457788888887777788899999999998 78998887776666655543 566777766554
No 408
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.002 Score=61.66 Aligned_cols=149 Identities=19% Similarity=0.268 Sum_probs=83.3
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEE-----EEcchhhHHHHHHHHHHHHH----hCCccCceeeeeee
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII-----GVTQPRRVAAVSVARRVAQE----LGVRLGEEVGYAIR 86 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~i-----lv~~P~r~la~~~a~rva~~----~~~~vg~~vg~~~~ 86 (704)
.+.+|+++.++||+|+||||++..+........|... +-..|..+||..+.- +.++ ....|.+.|+++--
T Consensus 23 ~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI-LkQ~N~i~~rlTV~dLv~FGRf 101 (252)
T COG4604 23 DIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI-LKQENHINSRLTVRDLVGFGRF 101 (252)
T ss_pred eecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH-HHhhchhhheeEHHHHhhcCCC
Confidence 4678999999999999999999887776666544322 234566666654321 1111 12233444443211
Q ss_pred cccc---cCcccc------------------eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHH---HHH
Q 005291 87 FEDR---TSERTL------------------IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGL---VKR 142 (704)
Q Consensus 87 ~~~~---~~~~~~------------------I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~l---lk~ 142 (704)
--++ +.++.. +--.+.|...|.+..--..++-++|.+||.= ..+|......+ +++
T Consensus 102 PYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPL-NNLDmkHsv~iMk~Lrr 180 (252)
T COG4604 102 PYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPL-NNLDMKHSVQIMKILRR 180 (252)
T ss_pred cccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcc-cccchHHHHHHHHHHHH
Confidence 0000 111100 1113445555555555567889999999997 57777654444 444
Q ss_pred HHHHhccCcEEEEEecCCChHHHhcccCC
Q 005291 143 LVNLRASKLKILITSATLDGEKVSKFFSN 171 (704)
Q Consensus 143 l~~~~~~~~kiI~~SATl~~~~~~~~~~~ 171 (704)
+.... +..+|+.=..++ |+..+.+
T Consensus 181 la~el--~KtiviVlHDIN---fAS~YsD 204 (252)
T COG4604 181 LADEL--GKTIVVVLHDIN---FASCYSD 204 (252)
T ss_pred HHHHh--CCeEEEEEeccc---HHHhhhh
Confidence 44444 345555556665 5555443
No 409
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.35 E-value=0.0013 Score=75.70 Aligned_cols=60 Identities=18% Similarity=0.103 Sum_probs=46.5
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl 160 (704)
.+.|...|.......+++.+++|+||+- ..+|......+.+.+..... .+..+|+.|+-+
T Consensus 450 LSgGq~qRl~lARal~~~~~ililDE~t-s~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~ 510 (547)
T PRK10522 450 LSKGQKKRLALLLALAEERDILLLDEWA-ADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD 510 (547)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech
Confidence 5778888888888889999999999998 78998877666666654332 257788888765
No 410
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.35 E-value=0.00029 Score=72.91 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=47.3
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~ 161 (704)
.+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+..... .+..+|+.|..++
T Consensus 149 ~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~ 214 (262)
T PRK09984 149 RVSTLSGGQQQRVAIARALMQQAKVILADEPI-ASLDPESARIVMDTLRDINQNDGITVVVTLHQVD 214 (262)
T ss_pred CccccCHHHHHHHHHHHHHhcCCCEEEecCcc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 34446778877777777778899999999998 78998877776666555432 1567788777654
No 411
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.35 E-value=0.0019 Score=66.95 Aligned_cols=64 Identities=25% Similarity=0.280 Sum_probs=45.8
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+...+...... +..+|+.|.-+
T Consensus 148 ~~~~LS~Ge~qrl~laral~~~p~lllLDEPt-~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~ 212 (268)
T PRK10419 148 RPPQLSGGQLQRVCLARALAVEPKLLILDEAV-SNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL 212 (268)
T ss_pred CCccCChHHHHHHHHHHHHhcCCCEEEEeCCC-cccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH
Confidence 34446788888887777788899999999998 789988766655555444321 56777777654
No 412
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.35 E-value=0.0011 Score=68.79 Aligned_cols=55 Identities=27% Similarity=0.447 Sum_probs=32.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCC
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV 75 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~ 75 (704)
...++|.||+|+||||++..++...... ...+....+......+....++..+|.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~~~~~~~~~~~~~~~~l~~i~~~lG~ 97 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RVVAAKLVNTRVDAEDLLRMVAADFGL 97 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-CeEEeeeeCCCCCHHHHHHHHHHHcCC
Confidence 4489999999999999999887765422 212222222222233445555555554
No 413
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.35 E-value=0.00089 Score=79.17 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=45.2
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.|...|.......+++.+++|+||+- ..+|...-..+.+.+... +..+|+.|+-+
T Consensus 589 LSGGQrQRialARAll~~p~iLiLDEpT-S~LD~~te~~i~~~L~~~---~~T~IiItHr~ 645 (686)
T TIGR03797 589 LSGGQRQRLLIARALVRKPRILLFDEAT-SALDNRTQAIVSESLERL---KVTRIVIAHRL 645 (686)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHh---CCeEEEEecCh
Confidence 5788888888888889999999999998 789998877766666543 34677777654
No 414
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.35 E-value=0.00089 Score=68.84 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=46.6
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+.+.+++++||.- ..+|......+++.+..... .+..+|+.|.-+
T Consensus 145 ~~~~LSgG~~qrv~laral~~~p~vlllDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~ 209 (253)
T TIGR02323 145 LPRAFSGGMQQRLQIARNLVTRPRLVFMDEPT-GGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL 209 (253)
T ss_pred CchhcCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 34446778888887777788999999999997 78998876666665554332 256777777654
No 415
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.35 E-value=0.00023 Score=84.42 Aligned_cols=59 Identities=29% Similarity=0.372 Sum_probs=46.6
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.|...|..+....+++.+++|+||+- ..+|...-..+.+.+... + +..+|+.|+-++
T Consensus 612 LSgGQrQRialARall~~p~iliLDE~T-s~LD~~te~~i~~~L~~~-~-~~T~IiitHr~~ 670 (708)
T TIGR01193 612 ISGGQKQRIALARALLTDSKVLILDEST-SNLDTITEKKIVNNLLNL-Q-DKTIIFVAHRLS 670 (708)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCcc-ccCCHHHHHHHHHHHHHh-c-CCEEEEEecchH
Confidence 5788888888888889999999999998 789988777766666553 3 567777777653
No 416
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.34 E-value=0.0018 Score=70.23 Aligned_cols=145 Identities=21% Similarity=0.266 Sum_probs=79.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE------EEEcchhhHHHHHHH---HHHH--H----HhCCccCce
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI------IGVTQPRRVAAVSVA---RRVA--Q----ELGVRLGEE 80 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~------ilv~~P~r~la~~~a---~rva--~----~~~~~vg~~ 80 (704)
.+..|.+-.+.|++|+||||++..+.....++.|.. +-+..|..+...-+. +.+. . .-+.-+|..
T Consensus 26 ~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e 105 (501)
T COG3845 26 SVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLE 105 (501)
T ss_pred eecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCc
Confidence 467899999999999999999998877766654432 223344333321110 0000 0 000001110
Q ss_pred eeee--e--------------ecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHH
Q 005291 81 VGYA--I--------------RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (704)
Q Consensus 81 vg~~--~--------------~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~ 144 (704)
.... + ++.-...++.+|--.|-|.-.|.-.-..+..+.+++|+||.. .-+...-...++..+.
T Consensus 106 ~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPT-aVLTP~E~~~lf~~l~ 184 (501)
T COG3845 106 PSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPT-AVLTPQEADELFEILR 184 (501)
T ss_pred cccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHH
Confidence 0000 0 000011123334445555554444434466788999999997 4555555555555555
Q ss_pred HHhccCcEEEEEecCCC
Q 005291 145 NLRASKLKILITSATLD 161 (704)
Q Consensus 145 ~~~~~~~kiI~~SATl~ 161 (704)
.....+..+|+.|+-++
T Consensus 185 ~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 185 RLAAEGKTIIFITHKLK 201 (501)
T ss_pred HHHHCCCEEEEEeccHH
Confidence 55556889999998875
No 417
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.33 E-value=9.2e-05 Score=80.40 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=45.5
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl 160 (704)
..-.+.|+..|..+......+.+++++||.- ..+|......+...+.+... .+..+|+.|.-+
T Consensus 147 ~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~ 210 (377)
T PRK11607 147 PHQLSGGQRQRVALARSLAKRPKLLLLDEPM-GALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ 210 (377)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 3346888888888888888899999999998 78998876665544444322 256777776654
No 418
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.33 E-value=0.00027 Score=72.61 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=46.8
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+......+..+|+.|..++
T Consensus 152 LSgG~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~ 212 (252)
T CHL00131 152 FSGGEKKRNEILQMALLDSELAILDETD-SGLDIDALKIIAEGINKLMTSENSIILITHYQR 212 (252)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 6888888888777788899999999997 789998877766666554433567777777643
No 419
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.33 E-value=0.00079 Score=69.92 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=45.4
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+..... +..+|+.|.-+
T Consensus 152 ~~~LS~G~~qrl~laral~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~ 213 (269)
T PRK14259 152 GYSLSGGQQQRLCIARTIAIEPEVILMDEPC-SALDPISTLKIEETMHELKK-NFTIVIVTHNM 213 (269)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 3446788888877777788899999999998 78998877666665555443 55666666654
No 420
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.32 E-value=0.0014 Score=77.66 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=48.3
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.|...|..+....+++.+++|+||+- ..+|.+....+.+.+....+ +..+|+.|+-++
T Consensus 594 LSgGq~qri~lARall~~~~ililDEpt-s~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~ 653 (694)
T TIGR01846 594 LSGGQRQRIAIARALVGNPRILIFDEAT-SALDYESEALIMRNMREICR-GRTVIIIAHRLS 653 (694)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCC-cCCCHHHHHHHHHHHHHHhC-CCEEEEEeCChH
Confidence 5788888888888889999999999998 78999887777777766554 677888877653
No 421
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.32 E-value=0.00028 Score=72.01 Aligned_cols=60 Identities=23% Similarity=0.247 Sum_probs=45.3
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.|+..+..+....+.+.+++|+||+- ..+|......+++.+......+..+|+.|.-+
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~ 204 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEID-SGLDIDALKIVAEGINRLREPDRSFLIITHYQ 204 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHCCcEEEEEEecH
Confidence 7888888888777788899999999998 78999887776666655543345677766654
No 422
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.32 E-value=0.00051 Score=68.25 Aligned_cols=35 Identities=37% Similarity=0.484 Sum_probs=28.8
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG 50 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~ 50 (704)
.+..|.+++++||+||||||.+.++......+.|.
T Consensus 23 ~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~ 57 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGE 57 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHHHHHhcccCCCCce
Confidence 46789999999999999999999887766655443
No 423
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.31 E-value=0.00035 Score=72.74 Aligned_cols=62 Identities=15% Similarity=0.187 Sum_probs=46.4
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+..... +..+|+.|.-+
T Consensus 159 ~~~LSgGq~qrv~LAraL~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~ 220 (274)
T PRK14265 159 GTALSGGQQQRLCIARAIAMKPDVLLMDEPC-SALDPISTRQVEELCLELKE-QYTIIMVTHNM 220 (274)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 3446788888887777788899999999998 78999887777666666544 55666666544
No 424
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.31 E-value=0.00028 Score=83.75 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=46.3
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.|...|..+....+++.+++|+||+- ..+|...-..+.+.+.. . +..+|+.|+-++
T Consensus 616 LSGGQrQRiaLARall~~p~iliLDEpt-S~LD~~te~~i~~~l~~--~-~~T~IiitHrl~ 673 (710)
T TIGR03796 616 LSGGQRQRLEIARALVRNPSILILDEAT-SALDPETEKIIDDNLRR--R-GCTCIIVAHRLS 673 (710)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEECcc-ccCCHHHHHHHHHHHHh--c-CCEEEEEecCHH
Confidence 5778888888888889999999999998 78999887777666654 2 677778777653
No 425
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.30 E-value=0.00039 Score=79.17 Aligned_cols=64 Identities=22% Similarity=0.131 Sum_probs=47.5
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.-.+.|+..|..+....+.+.+++|+||.- ..+|......+.+.+......+..+|+.|..+
T Consensus 142 ~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~ 205 (510)
T PRK09700 142 KVANLSISHKQMLEIAKTLMLDAKVIIMDEPT-SSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL 205 (510)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 34456888888888877788899999999998 78998877666665555443356677776654
No 426
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.30 E-value=0.00058 Score=68.52 Aligned_cols=64 Identities=14% Similarity=0.259 Sum_probs=46.0
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHH-HHHH-hccCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR-LVNL-RASKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~-l~~~-~~~~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+++. ++.. ...+..+|+.|.-++
T Consensus 138 ~~~LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~ 203 (218)
T cd03290 138 GINLSGGQRQRICVARALYQNTNIVFLDDPF-SALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ 203 (218)
T ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc-cccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH
Confidence 4457888888888877788999999999998 68888776665552 3332 222567777777654
No 427
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.30 E-value=0.0023 Score=65.60 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=45.8
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.|.-++
T Consensus 146 LS~G~~qrv~laral~~~p~illLDEPt-~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~ 206 (248)
T PRK09580 146 FSGGEKKRNDILQMAVLEPELCILDESD-SGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206 (248)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 7788888888877788899999999998 789988777666655444433566777766543
No 428
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.30 E-value=0.0027 Score=65.77 Aligned_cols=127 Identities=20% Similarity=0.300 Sum_probs=72.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE--cchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccce
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV--TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv--~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I 97 (704)
.++++++||+|+||||.+..+...... .+.+|++ .-+.|..+.+....+++..+..+ +. .. .. .
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~-~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~---~~--~~--~~--~---- 137 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKK-QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDV---IK--QK--EG--A---- 137 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEE---Ee--CC--CC--C----
Confidence 468889999999999877666554432 3445543 34567777777776777666321 10 00 00 0
Q ss_pred EEcchH-HHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc------cCcEEEEEecCCChHHH
Q 005291 98 KYLTDG-VLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA------SKLKILITSATLDGEKV 165 (704)
Q Consensus 98 ~~~T~g-~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~------~~~kiI~~SATl~~~~~ 165 (704)
-+. .....+. .....++++||||=+- |......+..-++.+....+ ++-.+++++||...+.+
T Consensus 138 ---dp~~~~~~~l~-~~~~~~~D~ViIDT~G-~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~ 207 (272)
T TIGR00064 138 ---DPAAVAFDAIQ-KAKARNIDVVLIDTAG-RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNAL 207 (272)
T ss_pred ---CHHHHHHHHHH-HHHHCCCCEEEEeCCC-CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHH
Confidence 011 1111111 1123579999999998 44433334444555554333 47789999999755443
No 429
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.29 E-value=0.00068 Score=71.20 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=47.3
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~ 161 (704)
.+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+++.+..... .+..+|+.|..++
T Consensus 147 ~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~ 212 (289)
T PRK13645 147 SPFELSGGQKRRVALAGIIAMDGNTLVLDEPT-GGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD 212 (289)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 34457888888888777788899999999998 78998877666655554432 2566777766543
No 430
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.29 E-value=0.0028 Score=65.39 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=47.0
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+..... ...+|+.|.-+
T Consensus 147 ~~~~LS~G~~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~ 209 (259)
T PRK14260 147 SALGLSGGQQQRLCIARALAIKPKVLLMDEPC-SALDPIATMKVEELIHSLRS-ELTIAIVTHNM 209 (259)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 34457888888888777788899999999998 78998877776666666544 55666666544
No 431
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.29 E-value=0.0003 Score=79.95 Aligned_cols=71 Identities=18% Similarity=0.137 Sum_probs=49.9
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhccc
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~~ 169 (704)
.+.-.+.|+..+..+....+.+.+++++||.- ..+|......+++.+......+..+|+.|+- .+.+..+.
T Consensus 138 ~~~~LSgG~~qrv~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd--~~~~~~~~ 208 (501)
T PRK10762 138 LVGELSIGEQQMVEIAKVLSFESKVIIMDEPT-DALTDTETESLFRVIRELKSQGRGIVYISHR--LKEIFEIC 208 (501)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC--HHHHHHhC
Confidence 34457888888888877788999999999998 7899887766665555543335566776654 34444443
No 432
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=97.29 E-value=0.00066 Score=78.13 Aligned_cols=142 Identities=18% Similarity=0.179 Sum_probs=80.6
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhHHHH-HHHHHHH---HH---hCCccCceeeee---
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAV-SVARRVA---QE---LGVRLGEEVGYA--- 84 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~la~-~~a~rva---~~---~~~~vg~~vg~~--- 84 (704)
.+..|+.+.|+||+||||||++..+........| .|.+ -.+.+.... +..+.++ ++ +...+.....-.
T Consensus 364 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G-~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~ 442 (555)
T TIGR01194 364 RIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEG-EILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASL 442 (555)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhH
Confidence 4568999999999999999999988776655444 3333 222221110 1111110 00 000000000000
Q ss_pred ---------eeccccc---C--cccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHH-Hhcc
Q 005291 85 ---------IRFEDRT---S--ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN-LRAS 149 (704)
Q Consensus 85 ---------~~~~~~~---~--~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~-~~~~ 149 (704)
...++.. . -++ ..-.+.|...|.......+.+.+++|+||+- ..+|.+....+.+.++. ....
T Consensus 443 ~~~~~~~~~~~l~~~~~~lp~g~~t-~~~LSgGq~qRlalaRall~~~~ililDE~t-s~LD~~~~~~i~~~l~~~~~~~ 520 (555)
T TIGR01194 443 DNAQQYLQRLEIADKVKIEDGGFST-TTALSTGQQKRLALICAWLEDRPILLFDEWA-ADQDPAFKRFFYEELLPDLKRQ 520 (555)
T ss_pred HHHHHHHHHcCCchhhcccccccCC-cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhC
Confidence 0000000 0 011 1346788888888888889999999999998 78999887776666543 2222
Q ss_pred CcEEEEEecCC
Q 005291 150 KLKILITSATL 160 (704)
Q Consensus 150 ~~kiI~~SATl 160 (704)
+..+|+.|+-+
T Consensus 521 ~~tiiiisH~~ 531 (555)
T TIGR01194 521 GKTIIIISHDD 531 (555)
T ss_pred CCEEEEEeccH
Confidence 67788888764
No 433
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.29 E-value=0.00085 Score=71.64 Aligned_cols=62 Identities=18% Similarity=0.332 Sum_probs=47.6
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~ 161 (704)
-.+.|+..|..+....+.+.++||+||.- ..+|......+++.+..... .+..+|+.|.-++
T Consensus 153 ~LSgGq~QRv~iArAL~~~P~llilDEPt-s~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~ 215 (326)
T PRK11022 153 QLSGGMSQRVMIAMAIACRPKLLIADEPT-TALDVTIQAQIIELLLELQQKENMALVLITHDLA 215 (326)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 36788888888887788899999999998 78999877666666655433 2577888877654
No 434
>PRK09183 transposase/IS protein; Provisional
Probab=97.29 E-value=0.0021 Score=66.24 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=28.4
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ 56 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~ 56 (704)
+.+++++++.||+|+|||+++..+..... ..+..+.++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~-~~G~~v~~~~ 137 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV-RAGIKVRFTT 137 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEEe
Confidence 56789999999999999988877754432 2344565543
No 435
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.28 E-value=0.00033 Score=72.03 Aligned_cols=61 Identities=13% Similarity=0.221 Sum_probs=45.3
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.-.+.|...+..+....+.+.+++|+||.. ..+|......+.+.+..... +..+|+.|..+
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~ 208 (253)
T PRK14267 148 SNLSGGQRQRLVIARALAMKPKILLMDEPT-ANIDPVGTAKIEELLFELKK-EYTIVLVTHSP 208 (253)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhh-CCEEEEEECCH
Confidence 345677777777777778899999999998 78999887776666666544 55667766654
No 436
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.28 E-value=0.001 Score=72.16 Aligned_cols=112 Identities=23% Similarity=0.374 Sum_probs=71.4
Q ss_pred hHHHHHHHHHh------ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHH--HHHHHHHhCCccC
Q 005291 7 LQYEETIVETV------EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSV--ARRVAQELGVRLG 78 (704)
Q Consensus 7 ~~~~~~il~~l------~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~--a~rva~~~~~~vg 78 (704)
.+-|+++++.+ .++.++.|.|+-|+|||+++..+...... .+..++++.|+..+|..+ ...+-..++..++
T Consensus 3 n~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~-~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~ 81 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS-RGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPIN 81 (364)
T ss_pred CHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc-ccceEEEecchHHHHHhccCCcchHHhcCcccc
Confidence 35577777777 88899999999999999998877665433 456899999999998776 3334444443322
Q ss_pred ceeeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHH
Q 005291 79 EEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGL 139 (704)
Q Consensus 79 ~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~l 139 (704)
.. .. ..........+ ...+.+.++||+||+= +++.+.+..+
T Consensus 82 ~~--------~~----~~~~~~~~~~~------~~~l~~~~~lIiDEis--m~~~~~l~~i 122 (364)
T PF05970_consen 82 NN--------EK----SQCKISKNSRL------RERLRKADVLIIDEIS--MVSADMLDAI 122 (364)
T ss_pred cc--------cc----ccccccccchh------hhhhhhheeeeccccc--chhHHHHHHH
Confidence 11 00 00000000011 1146778999999995 6666665554
No 437
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.28 E-value=0.0024 Score=68.23 Aligned_cols=62 Identities=18% Similarity=0.296 Sum_probs=47.3
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~ 161 (704)
-.+.|+..|..+....+.+.++||+||.- ..+|......+++.+...... +..+|+.|.-++
T Consensus 161 ~LSgG~~QRv~IArAL~~~P~llilDEPt-s~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~ 223 (330)
T PRK09473 161 EFSGGMRQRVMIAMALLCRPKLLIADEPT-TALDVTVQAQIMTLLNELKREFNTAIIMITHDLG 223 (330)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 36888888888888888999999999998 789988766666555544332 567888877654
No 438
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.00025 Score=80.43 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=46.5
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+......+..+|+.|+.+
T Consensus 132 ~~~LSgGq~qrv~lA~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~ 194 (491)
T PRK10982 132 VATLSVSQMQMIEIAKAFSYNAKIVIMDEPT-SSLTEKEVNHLFTIIRKLKERGCGIVYISHKM 194 (491)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 4446788888887777778899999999998 78998877776665555443356677777654
No 439
>PRK13409 putative ATPase RIL; Provisional
Probab=97.27 E-value=0.0017 Score=74.79 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=49.5
Q ss_pred cceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 95 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
..+.-.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+..... +..+|+.|+-++
T Consensus 208 ~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPt-s~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~ 272 (590)
T PRK13409 208 RDISELSGGELQRVAIAAALLRDADFYFFDEPT-SYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA 272 (590)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 345557888888888877788899999999998 68888877776666665554 667788777654
No 440
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.26 E-value=0.0031 Score=67.33 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=47.1
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
...-.+.|...+..+....+.+.+++++||+- ..+|......+...+..... +..+|+.|.-+
T Consensus 222 ~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPt-s~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l 284 (329)
T PRK14257 222 AGNALSGGQQQRLCIARAIALEPEVLLMDEPT-SALDPIATAKIEELILELKK-KYSIIIVTHSM 284 (329)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 44557888888888888888999999999998 78998876665555554444 66667766654
No 441
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.26 E-value=0.00031 Score=72.11 Aligned_cols=62 Identities=23% Similarity=0.225 Sum_probs=45.5
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++++||.. ..+|......+.+.+..... +..+|+.|.-+
T Consensus 144 ~~~LS~Gq~qr~~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~ 205 (250)
T PRK14262 144 GTRLSGGQQQRLCIARALAVEPEVILLDEPT-SALDPIATQRIEKLLEELSE-NYTIVIVTHNI 205 (250)
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCEEEEeCCc-cccCHHHHHHHHHHHHHHhc-CcEEEEEeCCH
Confidence 4446777777777777788899999999998 78998877776666665544 55666666643
No 442
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.26 E-value=0.00051 Score=70.34 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=47.8
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
+.-.+.|...+..+....+.+.+++++||+- ..+|......+.+.+..... +..+|+.|..++
T Consensus 140 ~~~LS~G~~qrv~laral~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~ 202 (246)
T PRK14269 140 ALALSGGQQQRLCIARALAIKPKLLLLDEPT-SALDPISSGVIEELLKELSH-NLSMIMVTHNMQ 202 (246)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH
Confidence 4456888888888777788899999999998 78998877776666655544 667777776543
No 443
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.26 E-value=0.0056 Score=65.75 Aligned_cols=119 Identities=19% Similarity=0.192 Sum_probs=74.6
Q ss_pred CCchHHHHHHHHHhccCCE-----EEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccC
Q 005291 4 LPILQYEETIVETVEQNPV-----VVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLG 78 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~-----vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg 78 (704)
+|+-++|.+.+..+...+. -|+.-+-|-|||.|...+++... .+...+++.|+.+ ..|....+.+... |
T Consensus 183 i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~--~ra~tLVvaP~VA-lmQW~nEI~~~T~---g 256 (791)
T KOG1002|consen 183 IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV--DRAPTLVVAPTVA-LMQWKNEIERHTS---G 256 (791)
T ss_pred ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc--ccCCeeEEccHHH-HHHHHHHHHHhcc---C
Confidence 6889999999887765443 25566889999977665555432 2445888899654 5677777766554 3
Q ss_pred ceeeeeeeccccc-----CcccceEEcchHHHHHHHHh-CC-------------CCCC--CceEEEeCCCc
Q 005291 79 EEVGYAIRFEDRT-----SERTLIKYLTDGVLLREILS-NP-------------DLSP--YSVIILDEAHE 128 (704)
Q Consensus 79 ~~vg~~~~~~~~~-----~~~~~I~~~T~g~Ll~~l~~-~~-------------~l~~--~~~IIiDEaHe 128 (704)
..--|......+. -.+.+++.+|...+-..... +. .|.+ +--||+||||-
T Consensus 257 slkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~ 327 (791)
T KOG1002|consen 257 SLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHN 327 (791)
T ss_pred ceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcc
Confidence 3222222222221 23567888888877666543 11 2333 34599999994
No 444
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.26 E-value=0.00063 Score=76.61 Aligned_cols=138 Identities=22% Similarity=0.320 Sum_probs=83.4
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc-------EEE-EcchhhHHH--HHHHHHHHHHhCCcc----Ccee
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG-------IIG-VTQPRRVAA--VSVARRVAQELGVRL----GEEV 81 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~-------~il-v~~P~r~la--~~~a~rva~~~~~~v----g~~v 81 (704)
.+..|+-+.|+||+|+||||++..++.......|. ++. +-|-...+- ..+...+.+...... ....
T Consensus 344 ~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L 423 (530)
T COG0488 344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYL 423 (530)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHH
Confidence 45688999999999999999999887766544221 222 223221111 122222222221100 0000
Q ss_pred eeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecC
Q 005291 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (704)
Q Consensus 82 g~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SAT 159 (704)
| ...|... .....|...+.|.-.|.++..-.+.+..++|+||.. ..+|.+.+..+-..+.. . +-.+|+.|+-
T Consensus 424 ~-~f~F~~~-~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPT-NhLDi~s~~aLe~aL~~-f--~Gtvl~VSHD 495 (530)
T COG0488 424 G-RFGFTGE-DQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT-NHLDIESLEALEEALLD-F--EGTVLLVSHD 495 (530)
T ss_pred H-HcCCChH-HHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCC-ccCCHHHHHHHHHHHHh-C--CCeEEEEeCC
Confidence 1 0111111 113567778999888888888888999999999998 68898888775555443 3 4578888874
No 445
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.26 E-value=0.0029 Score=65.00 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=46.1
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+.+... +..+|+.|..+
T Consensus 145 ~~~LS~Gq~qr~~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~ 206 (251)
T PRK14251 145 AQAFSGGQQQRICIARALAVRPKVVLLDEPT-SALDPISSSEIEETLMELKH-QYTFIMVTHNL 206 (251)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCC-ccCCHHHHHHHHHHHHHHHc-CCeEEEEECCH
Confidence 3345777777777777778899999999998 78999887776666665544 56677777654
No 446
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.25 E-value=0.00074 Score=70.21 Aligned_cols=64 Identities=20% Similarity=0.254 Sum_probs=44.1
Q ss_pred eEEcchHHHHHHHHhCCCC---------CCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDL---------SPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l---------~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+ .+.+++|+||.- ..+|......+++.+...... +..+|+.|..++
T Consensus 143 ~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~ 216 (272)
T PRK13547 143 VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPT-AALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN 216 (272)
T ss_pred cccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCcc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 3445677777666655555 488999999998 789988777766655554332 567777777643
No 447
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.25 E-value=0.0014 Score=63.43 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=68.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee-eeecccc-----cCccc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY-AIRFEDR-----TSERT 95 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~-~~~~~~~-----~~~~~ 95 (704)
..+|+||+|+|||+++-.+....... .........+.. .. .. ...+...++ .+.++.. ..+.+
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~----~~~~~~~~~~~~--~~----~~-~~~~~~~~~v~~~f~~~~~~~~~~~~~ 92 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGK----AAKLRRGSLLFL--AG----GG-VKAGINSASVEITFDKSYFLVLQGKVE 92 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcc----cccccCcchhhh--cc----cc-cCCCCceEEEEEEEECceEEecCCcCc
Confidence 88999999999998887666543211 111110010000 00 00 111222111 1222211 11233
Q ss_pred ceEEcchHHHHHHHHhCCC----CCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPD----LSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~----l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.| .+.|+..+..+.... +.+.+++|+||+. ..+|......+.+.+......+..+|+.|.-.
T Consensus 93 ~~--LS~Ge~~r~~Laral~~~~~~~p~llilDEp~-~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~ 158 (178)
T cd03239 93 QI--LSGGEKSLSALALIFALQEIKPSPFYVLDEID-AALDPTNRRRVSDMIKEMAKHTSQFIVITLKK 158 (178)
T ss_pred cc--CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 44 677776665544321 4678999999998 78998877776666655544346788877653
No 448
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.25 E-value=0.0027 Score=66.51 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=49.5
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhccc
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~~ 169 (704)
.+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+++.+..... +..+|+.|.- .+.+.++.
T Consensus 179 ~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt-~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~--~~~~~~~~ 248 (286)
T PRK14275 179 NALGLSGGQQQRLCVARTLAVEPEILLLDEPT-SALDPKATAKIEDLIQELRG-SYTIMIVTHN--MQQASRVS 248 (286)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhc-CCeEEEEeCC--HHHHHHhC
Confidence 34557788888888777788899999999998 78999887776666655544 5556665554 33444443
No 449
>PLN03232 ABC transporter C family member; Provisional
Probab=97.25 E-value=0.00032 Score=89.36 Aligned_cols=143 Identities=20% Similarity=0.180 Sum_probs=82.3
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHH-HHHHHHHH---HHhCCccCceeeeeeec----
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRVA---QELGVRLGEEVGYAIRF---- 87 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la-~~~a~rva---~~~~~~vg~~vg~~~~~---- 87 (704)
.+..|+.+.|+|+|||||||++..++.......|...+--++.+... .++-++++ ++.-..- .++..++..
T Consensus 1258 ~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~-gTIr~NL~~~~~~ 1336 (1495)
T PLN03232 1258 FVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFSEH 1336 (1495)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeC-ccHHHHcCCCCCC
Confidence 45689999999999999999998887766555444333344433221 11111111 0000000 000000000
Q ss_pred --c---------------cccCc--ccce----EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHH
Q 005291 88 --E---------------DRTSE--RTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (704)
Q Consensus 88 --~---------------~~~~~--~~~I----~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~ 144 (704)
+ ..... ++.| .-.+.|.-.+..+....+++.+++|+||+- ..+|...-..+.+.+.
T Consensus 1337 sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEAT-SaLD~~Te~~Iq~~L~ 1415 (1495)
T PLN03232 1337 NDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEAT-ASVDVRTDSLIQRTIR 1415 (1495)
T ss_pred CHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCc-ccCCHHHHHHHHHHHH
Confidence 0 00000 1111 125678877777777888999999999998 7888877655555555
Q ss_pred HHhccCcEEEEEecCCC
Q 005291 145 NLRASKLKILITSATLD 161 (704)
Q Consensus 145 ~~~~~~~kiI~~SATl~ 161 (704)
+..+ +..+|..++-++
T Consensus 1416 ~~~~-~~TvI~IAHRl~ 1431 (1495)
T PLN03232 1416 EEFK-SCTMLVIAHRLN 1431 (1495)
T ss_pred HHcC-CCEEEEEeCCHH
Confidence 5544 788888888764
No 450
>PF13173 AAA_14: AAA domain
Probab=97.25 E-value=0.0017 Score=59.22 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=23.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
++++++|.||.|+||||++.+++....
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 367899999999999999999887654
No 451
>PTZ00243 ABC transporter; Provisional
Probab=97.24 E-value=0.0005 Score=87.67 Aligned_cols=142 Identities=15% Similarity=0.149 Sum_probs=81.0
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHH-HHHHHHH---HHhCCccCceeeeeeecc---
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRVA---QELGVRLGEEVGYAIRFE--- 88 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~-~~a~rva---~~~~~~vg~~vg~~~~~~--- 88 (704)
.+..|+.+.|+|+|||||||++..++.......|.+.+--++.+.... ++-++++ ++--.. ..++..++...
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF-~gTIreNIdp~~~~ 1410 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLF-DGTVRQNVDPFLEA 1410 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccc-cccHHHHhCcccCC
Confidence 456899999999999999999988877766554443333343322111 1111110 000000 00000000000
Q ss_pred ---------------c---ccC--cccce----EEcchHHHHHHHHhCCCCCC-CceEEEeCCCcCCCCHHHHHHHHHHH
Q 005291 89 ---------------D---RTS--ERTLI----KYLTDGVLLREILSNPDLSP-YSVIILDEAHERSLNTDILLGLVKRL 143 (704)
Q Consensus 89 ---------------~---~~~--~~~~I----~~~T~g~Ll~~l~~~~~l~~-~~~IIiDEaHer~l~~d~l~~llk~l 143 (704)
+ ... -++.| .-.+.|...+..+....+++ ..+||+||+- ..+|...-..+.+.+
T Consensus 1411 sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEAT-SaLD~~te~~Iq~~L 1489 (1560)
T PTZ00243 1411 SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEAT-ANIDPALDRQIQATV 1489 (1560)
T ss_pred CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCC-ccCCHHHHHHHHHHH
Confidence 0 000 01111 12577887777777777875 8999999998 688887766655555
Q ss_pred HHHhccCcEEEEEecCC
Q 005291 144 VNLRASKLKILITSATL 160 (704)
Q Consensus 144 ~~~~~~~~kiI~~SATl 160 (704)
....+ +..+|+.++-+
T Consensus 1490 ~~~~~-~~TvI~IAHRl 1505 (1560)
T PTZ00243 1490 MSAFS-AYTVITIAHRL 1505 (1560)
T ss_pred HHHCC-CCEEEEEeccH
Confidence 55554 77888888765
No 452
>PRK06893 DNA replication initiation factor; Validated
Probab=97.24 E-value=0.0022 Score=64.89 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=20.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+..+++.||+|+|||+++..+..+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34678999999999998887776553
No 453
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.23 E-value=0.0026 Score=76.49 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=78.3
Q ss_pred CCchHHHHHHHHHhcc-CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceee
Q 005291 4 LPILQYEETIVETVEQ-NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (704)
Q Consensus 4 LPi~~~~~~il~~l~~-~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg 82 (704)
+.+..-|.+.+..+.. +++++|+|+.|+||||.+..+.... ...+..|+.+.|+-.++..+.+ ..|..
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~-e~~G~~V~~~ApTGkAA~~L~e----~tGi~------ 413 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAW-EAAGYEVRGAALSGIAAENLEG----GSGIA------ 413 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHH-HHcCCeEEEecCcHHHHHHHhh----ccCcc------
Confidence 3466778888887776 5689999999999998876543322 2236688889998877654432 22211
Q ss_pred eeeecccccCcccceEEcchHHHHHHH-HhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecC
Q 005291 83 YAIRFEDRTSERTLIKYLTDGVLLREI-LSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (704)
Q Consensus 83 ~~~~~~~~~~~~~~I~~~T~g~Ll~~l-~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SAT 159 (704)
-.|-..++..+ .....+...++|||||+- ++++..+..+++... +.+.++|++.=+
T Consensus 414 ----------------a~TI~sll~~~~~~~~~l~~~~vlIVDEAS--Mv~~~~m~~LL~~a~---~~garvVLVGD~ 470 (988)
T PRK13889 414 ----------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAG--MVGTRQLERVLSHAA---DAGAKVVLVGDP 470 (988)
T ss_pred ----------------hhhHHHHHhhhcccccccccCcEEEEECcc--cCCHHHHHHHHHhhh---hCCCEEEEECCH
Confidence 01222222111 112246678999999997 788887776665433 237888887643
No 454
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.23 E-value=0.0029 Score=71.89 Aligned_cols=71 Identities=24% Similarity=0.316 Sum_probs=50.1
Q ss_pred cceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhcc
Q 005291 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (704)
Q Consensus 95 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~ 168 (704)
..+.-.+.|+..+..+....+.+..++|+||.- ..+|......+.+.+......+..+|+.|.-+ +.+.++
T Consensus 399 ~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~--~~~~~~ 469 (500)
T TIGR02633 399 LPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPT-RGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL--AEVLGL 469 (500)
T ss_pred CccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC-CCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH--HHHHHh
Confidence 345567888888888777778889999999998 78888876666555544443356677776654 334444
No 455
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.23 E-value=0.00043 Score=77.83 Aligned_cols=138 Identities=18% Similarity=0.235 Sum_probs=84.9
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE-------EEEcc-----hhhHHHHHHH----------HHHHHHh
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-------IGVTQ-----PRRVAAVSVA----------RRVAQEL 73 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~-------ilv~~-----P~r~la~~~a----------~rva~~~ 73 (704)
.+..|+.++|.||+|||||+++..+...=++..|.. ++++. |...+..+++ +.+.+-+
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL 494 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVL 494 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHH
Confidence 356899999999999999999987766544433322 22221 2222221111 0010000
Q ss_pred -CCccCceeeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcE
Q 005291 74 -GVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (704)
Q Consensus 74 -~~~vg~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~k 152 (704)
.+..|..++ +.+.. ..-=.+.++|...|.....-.+.+++++|+|||- ..+|.+....+...+....| +..
T Consensus 495 ~~vgL~~L~~---rl~~~---~~W~~vLS~GEqQRlafARilL~kP~~v~LDEAT-sALDe~~e~~l~q~l~~~lp-~~t 566 (604)
T COG4178 495 HKVGLGDLAE---RLDEE---DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT-SALDEETEDRLYQLLKEELP-DAT 566 (604)
T ss_pred HHcCcHHHHH---HHhcc---CcHhhhcChhHHHHHHHHHHHHcCCCEEEEecch-hccChHHHHHHHHHHHhhCC-CCE
Confidence 011111111 11111 1112247888888888888889999999999998 68999988888888877777 888
Q ss_pred EEEEecCCC
Q 005291 153 ILITSATLD 161 (704)
Q Consensus 153 iI~~SATl~ 161 (704)
+|-.+....
T Consensus 567 vISV~Hr~t 575 (604)
T COG4178 567 VISVGHRPT 575 (604)
T ss_pred EEEeccchh
Confidence 888887644
No 456
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.23 E-value=0.0038 Score=58.78 Aligned_cols=34 Identities=32% Similarity=0.434 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ 56 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~ 56 (704)
+++|.||+|+|||+++..++..... .++.+++..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEE
Confidence 3689999999999999888877654 345555543
No 457
>PF05729 NACHT: NACHT domain
Probab=97.22 E-value=0.0012 Score=62.53 Aligned_cols=58 Identities=22% Similarity=0.280 Sum_probs=36.1
Q ss_pred ceEEEeCCCcCCCCHH-----HHHHHHHHHHHH-hccCcEEEEEecCCChHHHhcccCCCCccc
Q 005291 119 SVIILDEAHERSLNTD-----ILLGLVKRLVNL-RASKLKILITSATLDGEKVSKFFSNCPTLN 176 (704)
Q Consensus 119 ~~IIiDEaHer~l~~d-----~l~~llk~l~~~-~~~~~kiI~~SATl~~~~~~~~~~~~~~i~ 176 (704)
-+||||=++|...... ....++..++.. .+++.++++.|.+-....+..++.....+.
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~ 146 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILE 146 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEE
Confidence 3589898887544332 245556666655 334899998887766555677665543333
No 458
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.22 E-value=0.0011 Score=68.94 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=47.6
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+..... +..+|+.|..++
T Consensus 165 ~~~~LS~Gq~qrv~laral~~~p~lllLDEPt-~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~ 228 (272)
T PRK14236 165 NAFGLSGGQQQRLVIARAIAIEPEVLLLDEPT-SALDPISTLKIEELITELKS-KYTIVIVTHNMQ 228 (272)
T ss_pred CcccCCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH
Confidence 34456788888888777788899999999998 78998877766666655544 566777666543
No 459
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.22 E-value=0.00041 Score=71.68 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=45.4
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......++..+..... +..+|+.|.-+
T Consensus 154 ~~~LS~Gq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~ 215 (260)
T PRK10744 154 GYSLSGGQQQRLCIARGIAIRPEVLLLDEPC-SALDPISTGRIEELITELKQ-DYTVVIVTHNM 215 (260)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 3346778888877777788899999999998 78888876666665555543 55667666654
No 460
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.22 E-value=0.00069 Score=73.42 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=48.4
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.|.-.|.-+......++.+||+||.. .++|.+--..+.+.+...+..+..+|+.++-+
T Consensus 473 LSgGQRQRIaLARAlYG~P~lvVLDEPN-sNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRP 532 (580)
T COG4618 473 LSGGQRQRIALARALYGDPFLVVLDEPN-SNLDSEGEAALAAAILAAKARGGTVVVIAHRP 532 (580)
T ss_pred CCchHHHHHHHHHHHcCCCcEEEecCCC-CCcchhHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 3567777777777778888999999998 78999888888888888777677888877654
No 461
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.22 E-value=0.00055 Score=87.42 Aligned_cols=143 Identities=15% Similarity=0.148 Sum_probs=80.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHH-HHHHHH---HHhCCccCceeeeeee-cc--
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS-VARRVA---QELGVRLGEEVGYAIR-FE-- 88 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~-~a~rva---~~~~~~vg~~vg~~~~-~~-- 88 (704)
.+..|+.+.|+|+|||||||++..++.......|...+--.+.+....+ +-++++ ++--.. ..++-.++. +.
T Consensus 1308 ~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF-~gTIr~NLdp~~~~ 1386 (1522)
T TIGR00957 1308 TIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLF-SGSLRMNLDPFSQY 1386 (1522)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCccc-CccHHHHcCcccCC
Confidence 4568999999999999999999888776655444332223332221111 111110 000000 000000000 00
Q ss_pred ------------------ccc--Ccccce----EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHH
Q 005291 89 ------------------DRT--SERTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (704)
Q Consensus 89 ------------------~~~--~~~~~I----~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~ 144 (704)
... .-++.| .-.+.|...+..+....+++.+++|+||+- .++|.+.-..+.+.+.
T Consensus 1387 sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaT-SalD~~Te~~Iq~~l~ 1465 (1522)
T TIGR00957 1387 SDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEAT-AAVDLETDNLIQSTIR 1465 (1522)
T ss_pred CHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHH
Confidence 000 001111 124778888888888889999999999998 6888876555555555
Q ss_pred HHhccCcEEEEEecCCC
Q 005291 145 NLRASKLKILITSATLD 161 (704)
Q Consensus 145 ~~~~~~~kiI~~SATl~ 161 (704)
+..+ +..+|..++-++
T Consensus 1466 ~~~~-~~TvI~IAHRl~ 1481 (1522)
T TIGR00957 1466 TQFE-DCTVLTIAHRLN 1481 (1522)
T ss_pred HHcC-CCEEEEEecCHH
Confidence 5554 778888877653
No 462
>PRK08116 hypothetical protein; Validated
Probab=97.22 E-value=0.00079 Score=69.67 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=60.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccceEE
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKY 99 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I~~ 99 (704)
+..+++.|++|+|||.++..+....... +..++++.- .. +...+...++.. . .
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~-~~~v~~~~~-~~----ll~~i~~~~~~~------------~---~------ 166 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK-GVPVIFVNF-PQ----LLNRIKSTYKSS------------G---K------ 166 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEH-HH----HHHHHHHHHhcc------------c---c------
Confidence 3459999999999998887766654322 444555432 12 222232222100 0 0
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCChHHHhcccC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFFS 170 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~~~~~~~~~~ 170 (704)
.+...+++ .+.++++|||||++. .-.+++....+-.++..+.. +.++|+ |..++++.+...++
T Consensus 167 ~~~~~~~~------~l~~~dlLviDDlg~-e~~t~~~~~~l~~iin~r~~~~~~~Ii-TsN~~~~eL~~~~~ 230 (268)
T PRK08116 167 EDENEIIR------SLVNADLLILDDLGA-ERDTEWAREKVYNIIDSRYRKGLPTIV-TTNLSLEELKNQYG 230 (268)
T ss_pred ccHHHHHH------HhcCCCEEEEecccC-CCCCHHHHHHHHHHHHHHHHCCCCEEE-ECCCCHHHHHHHHh
Confidence 01111222 245678999999973 22345544445555554432 344444 44555555554443
No 463
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.22 E-value=0.00063 Score=69.88 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=45.8
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+..... +..+|+.|.-+
T Consensus 144 ~~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~ 206 (251)
T PRK14270 144 SALKLSGGQQQRLCIARTIAVKPDVILMDEPT-SALDPISTLKIEDLMVELKK-EYTIVIVTHNM 206 (251)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCH
Confidence 34456788877777777778889999999998 78999877776666655544 45666666543
No 464
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.21 E-value=0.0029 Score=71.97 Aligned_cols=66 Identities=26% Similarity=0.325 Sum_probs=49.8
Q ss_pred ccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 94 RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 94 ~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+..+--.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+......+..+|+.|.-+
T Consensus 391 ~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~ 456 (501)
T PRK11288 391 EQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPT-RGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL 456 (501)
T ss_pred cCccccCCHHHHHHHHHHHHHccCCCEEEEcCCC-CCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 3445667888888888887788899999999998 78999887776666655444356777776654
No 465
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.20 E-value=0.0046 Score=68.17 Aligned_cols=121 Identities=21% Similarity=0.308 Sum_probs=69.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE--cchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccce
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV--TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv--~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I 97 (704)
..+++++|++|+||||.+..+...... .+.++++ .-+.|..+.++.+.++...+..+ .+ ....
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~-~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~---~~-----~~~~------ 159 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKK-KGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF---YG-----DPDN------ 159 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE---Ee-----cCCc------
Confidence 357899999999999887766654432 2333333 44557777777777777666442 11 0000
Q ss_pred EEcchH-HHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 98 KYLTDG-VLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 98 ~~~T~g-~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
..+. .+.+.+.. +...++||||.+- |.-..+-++.-++.+.....++..++.++||..
T Consensus 160 --~d~~~i~~~al~~---~~~~DvVIIDTAG-r~~~d~~lm~El~~l~~~~~pdevlLVvda~~g 218 (437)
T PRK00771 160 --KDAVEIAKEGLEK---FKKADVIIVDTAG-RHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG 218 (437)
T ss_pred --cCHHHHHHHHHHH---hhcCCEEEEECCC-cccchHHHHHHHHHHHHHhcccceeEEEecccc
Confidence 0111 12222221 2335899999996 333333344445555554444778888888874
No 466
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=0.0005 Score=78.19 Aligned_cols=64 Identities=20% Similarity=0.157 Sum_probs=47.2
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+......+..+|+.|..+
T Consensus 140 ~~~~LSgGqkqrv~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~ 203 (506)
T PRK13549 140 PVGNLGLGQQQLVEIAKALNKQARLLILDEPT-ASLTESETAVLLDIIRDLKAHGIACIYISHKL 203 (506)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH
Confidence 34457888888888877788999999999998 68998877666665555443355677766654
No 467
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.19 E-value=0.00036 Score=71.76 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=46.0
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+..... +..+|+.|.-+
T Consensus 147 ~~~LSgGq~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~ 208 (253)
T PRK14242 147 ALGLSGGQQQRLCIARALAVEPEVLLMDEPA-SALDPIATQKIEELIHELKA-RYTIIIVTHNM 208 (253)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHhc-CCeEEEEEecH
Confidence 3346788888887777788899999999998 78998877776666655543 55667766654
No 468
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.19 E-value=0.00042 Score=71.51 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=46.6
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+..... +..+|+.|.-+
T Consensus 151 ~~~~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~ 213 (258)
T PRK14268 151 PALSLSGGQQQRLCIARTLAVKPKIILFDEPT-SALDPISTARIEDLIMNLKK-DYTIVIVTHNM 213 (258)
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCC-cccCHHHHHHHHHHHHHHhh-CCEEEEEECCH
Confidence 34456788888887777788899999999998 78998877776666655443 56677766654
No 469
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.19 E-value=0.0041 Score=73.20 Aligned_cols=137 Identities=17% Similarity=0.202 Sum_probs=90.0
Q ss_pred chHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCc
Q 005291 195 SYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCR 274 (704)
Q Consensus 195 ~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~ 274 (704)
.+.......+..+... .+|.+|||+|+.+..+.+.+.+.... .......+|.-+.++..+-|....++
T Consensus 462 ~~~~~~~~~i~~~~~~-~~~~~lvlF~Sy~~l~~~~~~~~~~~---------~~~~v~~q~~~~~~~~l~~f~~~~~~-- 529 (654)
T COG1199 462 ELLAKLAAYLREILKA-SPGGVLVLFPSYEYLKRVAERLKDER---------STLPVLTQGEDEREELLEKFKASGEG-- 529 (654)
T ss_pred HHHHHHHHHHHHHHhh-cCCCEEEEeccHHHHHHHHHHHhhcC---------ccceeeecCCCcHHHHHHHHHHhcCC--
Confidence 4555555555555544 45699999999999999999887652 11345567766666444444443333
Q ss_pred EEEEEcccccccccCCC--eEEEEeCCccccccccC----------CCCc--cccccccccHHhHHhhccccCCCC--Cc
Q 005291 275 RFIVSTNIAETSLTVDG--VVYVIDCGYVKQRQYNP----------SSGM--YSLDVVQISKVQANQRVGRAGRTR--PG 338 (704)
Q Consensus 275 kIlvaTniae~gidip~--v~~VId~g~~k~~~~~~----------~~g~--~~l~~~~iS~~~~~QR~GRaGR~~--~G 338 (704)
-++|+|..+..|||+|+ .+.||-.|++-...-|| ..|. +.....|.......|-+||+=|.. .|
T Consensus 530 ~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G 609 (654)
T COG1199 530 LILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRG 609 (654)
T ss_pred eEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCce
Confidence 89999999999999987 46777667765533222 2221 112233455567789999999973 47
Q ss_pred eEEEe
Q 005291 339 KCYRL 343 (704)
Q Consensus 339 ~c~~L 343 (704)
.++.|
T Consensus 610 ~ivll 614 (654)
T COG1199 610 VIVLL 614 (654)
T ss_pred EEEEe
Confidence 77765
No 470
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.19 E-value=0.0028 Score=72.16 Aligned_cols=65 Identities=15% Similarity=0.255 Sum_probs=48.9
Q ss_pred cceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 95 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
..+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+......+..+|+.|.-+
T Consensus 399 ~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt-~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~ 463 (510)
T PRK15439 399 QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPT-RGVDVSARNDIYQLIRSIAAQNVAVLFISSDL 463 (510)
T ss_pred CccccCCcHHHHHHHHHHHHhhCCCEEEECCCC-cCcChhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 445567888888888777788899999999998 78998887776666655443356777777654
No 471
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.19 E-value=0.003 Score=65.25 Aligned_cols=119 Identities=19% Similarity=0.265 Sum_probs=69.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCCCCCc------EEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcc
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSG------IIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSER 94 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~~~~~~~------~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~ 94 (704)
.+++|+|+||-|||+++..+...+...... .+++-.|...-....+..+...++......- ....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~--------~~~~- 132 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRD--------RVAK- 132 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCC--------CHHH-
Confidence 689999999999999999998877553211 4455567666677777777777776532210 0000
Q ss_pred cceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHH----HHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTD----ILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 95 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d----~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+. ..++.+. --++.+|||||+|.-...+. -.+..+|.+-+.. ++.+|++ .|.+
T Consensus 133 -----~~~-~~~~llr----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL--~ipiV~v-Gt~~ 190 (302)
T PF05621_consen 133 -----LEQ-QVLRLLR----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL--QIPIVGV-GTRE 190 (302)
T ss_pred -----HHH-HHHHHHH----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc--CCCeEEe-ccHH
Confidence 011 1112222 23578999999994222221 2555566654443 4666655 3543
No 472
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.19 E-value=0.00037 Score=79.14 Aligned_cols=63 Identities=27% Similarity=0.273 Sum_probs=47.1
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+......+..+|+.|+-+
T Consensus 138 ~~~LSgGq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~ 200 (501)
T PRK11288 138 LKYLSIGQRQMVEIAKALARNARVIAFDEPT-SSLSAREIEQLFRVIRELRAEGRVILYVSHRM 200 (501)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEcCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3446788888888777788899999999998 78998877776666655443356677777654
No 473
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.19 E-value=0.0034 Score=67.18 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=47.4
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~ 161 (704)
-.+.|+..|..+....+.+.++||+||.- ..+|......+++.+..... .+..+|+.|.-+.
T Consensus 158 ~LSgG~~QRv~iArAL~~~P~llilDEPt-s~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~ 220 (330)
T PRK15093 158 ELTEGECQKVMIAIALANQPRLLIADEPT-NAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ 220 (330)
T ss_pred hCCHHHHHHHHHHHHHHCCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 46788888888888888999999999998 78998876666655555433 2577888877653
No 474
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.18 E-value=0.004 Score=64.01 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=45.1
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|...+..+....+.+.+++++||+. ..+|......+.+.+..... +..+|+.|.-+
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~lllLDEP~-~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~ 208 (253)
T PRK14261 147 ALSLSGGQQQRLCIARTLAVNPEVILMDEPC-SALDPIATAKIEDLIEDLKK-EYTVIIVTHNM 208 (253)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHhh-CceEEEEEcCH
Confidence 4446778777777777778899999999998 78998877766555555443 55666666644
No 475
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.18 E-value=0.00043 Score=71.12 Aligned_cols=65 Identities=15% Similarity=0.222 Sum_probs=47.8
Q ss_pred cceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 95 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
..+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... +..+|+.|..++
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~ 208 (252)
T PRK14272 144 TPATGLSGGQQQRLCIARALAVEPEILLMDEPT-SALDPASTARIEDLMTDLKK-VTTIIIVTHNMH 208 (252)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH
Confidence 345557888888888777788899999999998 78888877666665555443 566777766543
No 476
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.18 E-value=0.00066 Score=69.59 Aligned_cols=64 Identities=23% Similarity=0.311 Sum_probs=43.8
Q ss_pred eEEcchHHHHHHHHhCCCCC-------CCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLS-------PYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~-------~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+....+. +.+++|+||.- ..+|......+.+.+......+..+|+.|..++
T Consensus 124 ~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt-~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~ 194 (248)
T PRK03695 124 VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPM-NSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN 194 (248)
T ss_pred cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 44467777766665555554 56999999998 789988766665555554333567788777654
No 477
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.18 E-value=0.0036 Score=64.92 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=46.7
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+..... +..+|+.|..++
T Consensus 161 ~~~~LSgGq~qrl~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~ 224 (268)
T PRK14248 161 SALSLSGGQQQRLCIARTLAMKPAVLLLDEPA-SALDPISNAKIEELITELKE-EYSIIIVTHNMQ 224 (268)
T ss_pred CcccCCHHHHHHHHHHHHHhCCCCEEEEcCCC-cccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH
Confidence 34457788888887777788899999999998 78998877766555555443 556677666543
No 478
>PLN03130 ABC transporter C family member; Provisional
Probab=97.17 E-value=0.00061 Score=87.10 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=81.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHH-HHHHHHHH---HHhCCccCceeeeeeec----
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRVA---QELGVRLGEEVGYAIRF---- 87 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la-~~~a~rva---~~~~~~vg~~vg~~~~~---- 87 (704)
.+..|+.+.|+|+|||||||++..++.......|...+--++.+... .++-++++ ++--..-| ++..++..
T Consensus 1261 ~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~~~ 1339 (1622)
T PLN03130 1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFNEH 1339 (1622)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCCCC
Confidence 46789999999999999999998887766555443332233322211 11111110 00000000 00000000
Q ss_pred --c---------------cccC--cccce----EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHH
Q 005291 88 --E---------------DRTS--ERTLI----KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (704)
Q Consensus 88 --~---------------~~~~--~~~~I----~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~ 144 (704)
+ .... -++.| .-.+.|.-.+..+....+++.+++|+|||- ..+|...-..+.+.+.
T Consensus 1340 tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEAT-SaLD~~Te~~Iq~~I~ 1418 (1622)
T PLN03130 1340 NDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEAT-AAVDVRTDALIQKTIR 1418 (1622)
T ss_pred CHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCC-CCCCHHHHHHHHHHHH
Confidence 0 0000 01111 125678888877888888999999999998 7888877666555555
Q ss_pred HHhccCcEEEEEecCCC
Q 005291 145 NLRASKLKILITSATLD 161 (704)
Q Consensus 145 ~~~~~~~kiI~~SATl~ 161 (704)
+..+ +..+|..++-++
T Consensus 1419 ~~~~-~~TvI~IAHRL~ 1434 (1622)
T PLN03130 1419 EEFK-SCTMLIIAHRLN 1434 (1622)
T ss_pred HHCC-CCEEEEEeCChH
Confidence 5554 788888887664
No 479
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.17 E-value=0.0024 Score=59.51 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=76.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhh----HHHHHHHHHHHH---HhCCccCcee--eeeee
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR----VAAVSVARRVAQ---ELGVRLGEEV--GYAIR 86 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r----~la~~~a~rva~---~~~~~vg~~v--g~~~~ 86 (704)
++..|+.+.|+||.||||||++.++......+.|....=.+|-- +.-.+....+++ .+|..+.... -|.++
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r 104 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIR 104 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHh
Confidence 46789999999999999999999888877665443222223321 223333334433 2232222211 12222
Q ss_pred cccccC----------------cccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh-cc
Q 005291 87 FEDRTS----------------ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-AS 149 (704)
Q Consensus 87 ~~~~~~----------------~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~-~~ 149 (704)
...... -..+|.-++.|.-.+..+.....-.++++.+||.. ..+|..-...+-..+.+.. +.
T Consensus 105 ~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T-sALD~~nkr~ie~mi~~~v~~q 183 (223)
T COG4619 105 NRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEIT-SALDESNKRNIEEMIHRYVREQ 183 (223)
T ss_pred ccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCch-hhcChhhHHHHHHHHHHHhhhh
Confidence 211100 01334445666544444333334456899999997 5666655444333333332 33
Q ss_pred CcEEEEEecCC
Q 005291 150 KLKILITSATL 160 (704)
Q Consensus 150 ~~kiI~~SATl 160 (704)
+.-++-.+..-
T Consensus 184 ~vAv~WiTHd~ 194 (223)
T COG4619 184 NVAVLWITHDK 194 (223)
T ss_pred ceEEEEEecCh
Confidence 56666665543
No 480
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.0032 Score=65.13 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=45.4
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~ 161 (704)
.+.||..|.+..-....+.++||-||.. ..+|......+++.+..... .+.-+|+.|+-+.
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPT-TALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~ 215 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPT-TALDVTVQAQILDLLKELQREKGTALILITHDLG 215 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCc-chhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 5788999998887788999999999998 67887765554444433332 3788999988664
No 481
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.17 E-value=0.0016 Score=67.92 Aligned_cols=86 Identities=28% Similarity=0.359 Sum_probs=53.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCC-CCcE--EEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCccc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHGYT-KSGI--IGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~~~-~~~~--ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~ 95 (704)
.+.+++++||||+||||.+..+....... .+.+ ++-+-|.|..+.+....++..++..+. +
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~-------------- 256 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--V-------------- 256 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--c--------------
Confidence 45689999999999998887776655432 2233 333556677777766666666654321 0
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEA 126 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEa 126 (704)
..++.-+...+. .+.++++|+||.+
T Consensus 257 ---~~~~~~l~~~l~---~~~~~d~vliDt~ 281 (282)
T TIGR03499 257 ---ARDPKELRKALD---RLRDKDLILIDTA 281 (282)
T ss_pred ---cCCHHHHHHHHH---HccCCCEEEEeCC
Confidence 113333433333 2356899999976
No 482
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.17 E-value=0.00067 Score=77.30 Aligned_cols=65 Identities=25% Similarity=0.238 Sum_probs=48.5
Q ss_pred cceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 95 ~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
..+--.+.|+..+..+....+.+..++|+||.- ..+|......+.+.+......+..+|+.|+-+
T Consensus 405 ~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt-~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~ 469 (510)
T PRK09700 405 QNITELSGGNQQKVLISKWLCCCPEVIIFDEPT-RGIDVGAKAEIYKVMRQLADDGKVILMVSSEL 469 (510)
T ss_pred CccccCChHHHHHHHHHHHHhcCCCEEEECCCC-CCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 345557888888888777778899999999998 78998877776666655443356777777654
No 483
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.16 E-value=0.0012 Score=67.92 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=45.6
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+..... +..+|+.|.-+
T Consensus 144 ~~~~LS~Gq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~-~~tilivsh~~ 206 (251)
T PRK14249 144 SGLALSGGQQQRLCIARVLAIEPEVILMDEPC-SALDPVSTMRIEELMQELKQ-NYTIAIVTHNM 206 (251)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 34446788888877777788899999999998 78998876665555544432 56677776654
No 484
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.16 E-value=0.0016 Score=69.17 Aligned_cols=117 Identities=21% Similarity=0.205 Sum_probs=63.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccceE
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I~ 98 (704)
.++.+++.||||+|||.++..+..... ..+..|+++.- ..+... +.... ++... .
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~-~~g~~V~y~t~-~~l~~~----l~~~~-------------~~~~~-~----- 236 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELL-DRGKSVIYRTA-DELIEI----LREIR-------------FNNDK-E----- 236 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HCCCeEEEEEH-HHHHHH----HHHHH-------------hccch-h-----
Confidence 468899999999999987776655543 23445555432 222222 21110 00000 0
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhcccC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS 170 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~~~ 170 (704)
.... +. .+.++++||||+++. ...+++....+-.++..+-..-+-+++|..++++.+...++
T Consensus 237 --~~~~-~~------~l~~~DLLIIDDlG~-e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~ 298 (329)
T PRK06835 237 --LEEV-YD------LLINCDLLIIDDLGT-EKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYS 298 (329)
T ss_pred --HHHH-HH------HhccCCEEEEeccCC-CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHh
Confidence 0000 11 245689999999983 44455555555566665542333455666666666655443
No 485
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.16 E-value=4.8e-05 Score=70.20 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=25.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCC
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGY 46 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~ 46 (704)
+..|+.++|+|++||||||++..+......
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred EcCCCEEEEEccCCCccccceeeecccccc
Confidence 568999999999999999999877766544
No 486
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.15 E-value=0.00099 Score=69.29 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=47.2
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.-.+.|+..+..+....+.+.+++|+||.- .++|......+.+.+..... +..+|+.|.-++
T Consensus 164 ~~~~LSgGe~qrv~laraL~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~ 227 (271)
T PRK14238 164 NAYGLSGGQQQRLCIARCLAIEPDVILMDEPT-SALDPISTLKVEELVQELKK-DYSIIIVTHNMQ 227 (271)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH
Confidence 34446778887777777778899999999998 78999887776666655544 566777776543
No 487
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.14 E-value=0.0043 Score=61.14 Aligned_cols=138 Identities=24% Similarity=0.315 Sum_probs=74.1
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchh-hHHHHHHHH--------------HHHHHhCCccCce
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-RVAAVSVAR--------------RVAQELGVRLGEE 80 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~-r~la~~~a~--------------rva~~~~~~vg~~ 80 (704)
.+..|+++.+.|++|+||||++..+........+...+--++. +....+.++ ++.-+-+..+|.
T Consensus 25 ~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~- 103 (237)
T COG0410 25 EVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGA- 103 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhh-
Confidence 3568999999999999999999998887765433322221110 000111111 111111111111
Q ss_pred eeeeeecccccC----------------cccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHH
Q 005291 81 VGYAIRFEDRTS----------------ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (704)
Q Consensus 81 vg~~~~~~~~~~----------------~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~ 144 (704)
|..+.+.... .+.+---++.|.-....+....+.+++++++||.- -.+..-+...+.+.+.
T Consensus 104 --~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs-~GLaP~iv~~I~~~i~ 180 (237)
T COG0410 104 --YARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPS-EGLAPKIVEEIFEAIK 180 (237)
T ss_pred --hcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCc-cCcCHHHHHHHHHHHH
Confidence 1111000000 01111124455444444556678889999999998 4888888777777776
Q ss_pred HHhcc-CcEEEEEe
Q 005291 145 NLRAS-KLKILITS 157 (704)
Q Consensus 145 ~~~~~-~~kiI~~S 157 (704)
..+.. ...|++.-
T Consensus 181 ~l~~~~g~tIlLVE 194 (237)
T COG0410 181 ELRKEGGMTILLVE 194 (237)
T ss_pred HHHHcCCcEEEEEe
Confidence 66642 34566553
No 488
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.14 E-value=0.0016 Score=72.46 Aligned_cols=70 Identities=20% Similarity=0.276 Sum_probs=46.5
Q ss_pred chHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCChHHHhcccCCCCc
Q 005291 101 TDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLDGEKVSKFFSNCPT 174 (704)
Q Consensus 101 T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~~~~~~~~~~~~~~ 174 (704)
+.|.-.|.........++.+||.||+- ..+|......+++-+...+. -++..|+.|+-++ +.+++.+...
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~-SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~---vV~~i~drv~ 501 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPV-SALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA---VVRYIADRVA 501 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCc-cccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH---HHHhhCceEE
Confidence 445555555555567889999999998 68888775555444444332 1689999999876 5555544333
No 489
>PRK10867 signal recognition particle protein; Provisional
Probab=97.14 E-value=0.0055 Score=67.41 Aligned_cols=124 Identities=17% Similarity=0.254 Sum_probs=70.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEE--EEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccceE
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGII--GVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~i--lv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I~ 98 (704)
.+++++|++|+||||.+..+........+.++ +-.-+.|..+.++.+.+++..+..+- . .. ..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~---~--~~----~~------ 165 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF---P--SG----DG------ 165 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE---e--cC----CC------
Confidence 47899999999999877666654432213333 33567888887777777776654421 1 00 00
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
..|..+...........++++||+|=+=....+.... .-+..+.....++-.+++++|+..
T Consensus 166 -~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm-~eL~~i~~~v~p~evllVlda~~g 226 (433)
T PRK10867 166 -QDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELM-DELKAIKAAVNPDEILLVVDAMTG 226 (433)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHH-HHHHHHHHhhCCCeEEEEEecccH
Confidence 1223333322222223568999999997222344443 434555443333555778888763
No 490
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.14 E-value=0.0049 Score=65.22 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=46.9
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||+- ..+|......+.+.+..... +..+|+.|.-+
T Consensus 198 ~~~LSgGq~qrv~LAraL~~~p~lLLLDEPt-sgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~ 259 (305)
T PRK14264 198 ALGLSGGQQQRLCIARCLAVDPEVILMDEPA-SALDPIATSKIEDLIEELAE-EYTVVVVTHNM 259 (305)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH
Confidence 3447788888888877788999999999998 78998887776666665554 55666666654
No 491
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.14 E-value=0.004 Score=62.87 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=21.9
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..++.+++.||+|+|||+++..+....
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999887766543
No 492
>PRK13409 putative ATPase RIL; Provisional
Probab=97.13 E-value=0.0012 Score=76.12 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=81.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE-----EEE-cchhh-HHHHHHHHHHHHHh-CCccCceee---eee
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-----IGV-TQPRR-VAAVSVARRVAQEL-GVRLGEEVG---YAI 85 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~-----ilv-~~P~r-~la~~~a~rva~~~-~~~vg~~vg---~~~ 85 (704)
+..|+++.|.||+||||||++..+........|.. +.+ -|... .....+.+.+.... .......+. ...
T Consensus 362 i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l 441 (590)
T PRK13409 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPL 441 (590)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHC
Confidence 57899999999999999999998887765444332 111 11100 00001111111000 000000000 000
Q ss_pred ecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCC
Q 005291 86 RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (704)
Q Consensus 86 ~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl 160 (704)
..+ ...+..+.-.+.|...+..+....+.+.+++|+||.- ..+|......+.+.+..... .+..+|+.|+-+
T Consensus 442 ~l~--~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt-~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~ 514 (590)
T PRK13409 442 QLE--RLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPS-AHLDVEQRLAVAKAIRRIAEEREATALVVDHDI 514 (590)
T ss_pred CCH--HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 000 0123456668899999988888888999999999998 78999887776666655433 145677776654
No 493
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.13 E-value=0.00092 Score=65.12 Aligned_cols=33 Identities=21% Similarity=0.096 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~ 55 (704)
+++|.||+|+|||++..+++..... .+..++++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~-~g~~v~~~ 33 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA-RGEPGLYV 33 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH-CCCcEEEE
Confidence 3689999999999999888876543 34455544
No 494
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=97.13 E-value=0.0024 Score=74.90 Aligned_cols=59 Identities=15% Similarity=0.099 Sum_probs=45.7
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
-.+.|+..|..+....+.+.+++|+||+- ..+|.+....+.+.+.. . +..+|+.|+-++
T Consensus 582 ~LSgGqkQRl~iARal~~~p~illLDEpt-s~LD~~~~~~l~~~l~~-~--~~tvI~isH~~~ 640 (659)
T TIGR00954 582 VLSGGEKQRIAMARLFYHKPQFAILDECT-SAVSVDVEGYMYRLCRE-F--GITLFSVSHRKS 640 (659)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHH-c--CCEEEEEeCchH
Confidence 47889988888888889999999999998 78998876665554433 2 567788777654
No 495
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.13 E-value=0.0022 Score=75.87 Aligned_cols=48 Identities=15% Similarity=0.045 Sum_probs=32.1
Q ss_pred CEEEEEcCCCCcHH-HHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHH
Q 005291 21 PVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR 68 (704)
Q Consensus 21 ~~vii~gpTGsGKT-t~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~r 68 (704)
.++-+..+||+||| |.+..++.......-.+.++++|+.+.-..+.+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~ 108 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNF 108 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHH
Confidence 47899999999999 4554443333323345889999987665555443
No 496
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=97.13 E-value=0.00084 Score=74.00 Aligned_cols=142 Identities=26% Similarity=0.252 Sum_probs=76.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc------chhhHHHH---------------HHHHHHHHHhC
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT------QPRRVAAV---------------SVARRVAQELG 74 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~------~P~r~la~---------------~~a~rva~~~~ 74 (704)
.+..|++..+.|++|+||||++..+......+.|...+-- .|..+... ++++.+. +|
T Consensus 30 ~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNif--Lg 107 (500)
T COG1129 30 TVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIF--LG 107 (500)
T ss_pred EEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhh--cc
Confidence 5678999999999999999999988877765544332222 23222111 1111110 11
Q ss_pred CccCceeeeeeeccc--------------ccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHH
Q 005291 75 VRLGEEVGYAIRFED--------------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLV 140 (704)
Q Consensus 75 ~~vg~~vg~~~~~~~--------------~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~ll 140 (704)
.......|. +.... .....+.+--.+-+.-.-.-.......+..+||+||.. .++...-...++
T Consensus 108 re~~~~~g~-id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPT-aaLt~~E~~~Lf 185 (500)
T COG1129 108 REPTRRFGL-IDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPT-AALTVKETERLF 185 (500)
T ss_pred cccccCCCc-cCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHH
Confidence 110000010 00000 00012222222322222222333345578899999998 677776666666
Q ss_pred HHHHHHhccCcEEEEEecCCC
Q 005291 141 KRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 141 k~l~~~~~~~~kiI~~SATl~ 161 (704)
+.+.+.+..+.-+|+.|+-++
T Consensus 186 ~~ir~Lk~~Gv~ii~ISHrl~ 206 (500)
T COG1129 186 DLIRRLKAQGVAIIYISHRLD 206 (500)
T ss_pred HHHHHHHhCCCEEEEEcCcHH
Confidence 666666666899999999764
No 497
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.00069 Score=70.29 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=45.7
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+++.+..... +..+|+.|.-+
T Consensus 161 ~~~LSgGq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~ 222 (267)
T PRK14235 161 GTGLSGGQQQRLCIARAIAVSPEVILMDEPC-SALDPIATAKVEELIDELRQ-NYTIVIVTHSM 222 (267)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCH
Confidence 3446788888887777788899999999998 78998877776666655543 55666666544
No 498
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.12 E-value=0.0088 Score=57.29 Aligned_cols=145 Identities=23% Similarity=0.245 Sum_probs=82.9
Q ss_pred HHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc--------------EEEEcc-----hhhHHHHHHHHHHHH
Q 005291 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG--------------IIGVTQ-----PRRVAAVSVARRVAQ 71 (704)
Q Consensus 11 ~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~--------------~ilv~~-----P~r~la~~~a~rva~ 71 (704)
+++--.+.+|+.+++.||+||||||++..+.....+..+. +-++.| |...+...++--+ +
T Consensus 22 e~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL-~ 100 (259)
T COG4525 22 EDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGL-Q 100 (259)
T ss_pred hccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHH-H
Confidence 3444467899999999999999999998887765543221 223333 4333333222111 0
Q ss_pred HhCC----------ccCceeeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHH---HHH
Q 005291 72 ELGV----------RLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI---LLG 138 (704)
Q Consensus 72 ~~~~----------~vg~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~---l~~ 138 (704)
..|. +.-..||.. . .....|.-.+.||-.|.-......-+++++.+||.- -.+|.-. +..
T Consensus 101 l~Gi~k~~R~~~a~q~l~~VgL~----~--~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPf-gAlDa~tRe~mQe 173 (259)
T COG4525 101 LRGIEKAQRREIAHQMLALVGLE----G--AEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPF-GALDALTREQMQE 173 (259)
T ss_pred hcCCCHHHHHHHHHHHHHHhCcc----c--ccccceEeecchHHHHHHHHHHhhcCcceEeecCch-hhHHHHHHHHHHH
Confidence 0010 001112211 0 012346667888888877777777889999999986 3444432 222
Q ss_pred HHHHHHHHhccCcEEEEEecCCChHHH
Q 005291 139 LVKRLVNLRASKLKILITSATLDGEKV 165 (704)
Q Consensus 139 llk~l~~~~~~~~kiI~~SATl~~~~~ 165 (704)
++-.+-+. .+..+++.|..++...|
T Consensus 174 lLldlw~~--tgk~~lliTH~ieEAlf 198 (259)
T COG4525 174 LLLDLWQE--TGKQVLLITHDIEEALF 198 (259)
T ss_pred HHHHHHHH--hCCeEEEEeccHHHHHh
Confidence 22222222 37789999988875543
No 499
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.12 E-value=0.0065 Score=57.28 Aligned_cols=62 Identities=15% Similarity=0.269 Sum_probs=50.4
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
..+.|.-.|......+.-++.++.+||.. ..+|..+.-.+++-+......+...++.+.-+.
T Consensus 152 ~LSGGQQQR~aIARaLameP~vmLFDEPT-SALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~ 213 (256)
T COG4598 152 HLSGGQQQRVAIARALAMEPEVMLFDEPT-SALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG 213 (256)
T ss_pred ccCchHHHHHHHHHHHhcCCceEeecCCc-ccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 46777777777777777889999999998 789999988888888777666777888887764
No 500
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.11 E-value=0.0013 Score=68.32 Aligned_cols=62 Identities=16% Similarity=0.266 Sum_probs=45.8
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+...+..... +..+|+.|.-+
T Consensus 161 ~~~LS~G~~qrl~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~ 222 (267)
T PRK14237 161 ALTLSGGQQQRLCIARAIAVKPDILLMDEPA-SALDPISTMQLEETMFELKK-NYTIIIVTHNM 222 (267)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH
Confidence 3446788888877777788899999999998 78998877666665555543 56677776654
Done!