Query 005291
Match_columns 704
No_of_seqs 575 out of 3685
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 21:07:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005291.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005291hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 9E-108 3E-112 959.1 57.2 626 3-646 92-729 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 5.5E-56 1.9E-60 522.2 30.0 515 5-536 30-628 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 4.9E-54 1.7E-58 504.2 30.2 510 5-533 25-604 (702)
4 3i4u_A ATP-dependent RNA helic 100.0 1.8E-54 6.1E-59 442.9 21.2 244 383-645 5-249 (270)
5 2zj8_A DNA helicase, putative 100.0 1.8E-51 6.3E-56 483.8 26.6 508 5-532 23-613 (720)
6 3o8b_A HCV NS3 protease/helica 100.0 2.2E-38 7.5E-43 359.6 16.8 297 3-350 215-517 (666)
7 3l9o_A ATP-dependent RNA helic 100.0 1.2E-37 4.1E-42 377.0 22.0 327 4-349 183-599 (1108)
8 4f92_B U5 small nuclear ribonu 100.0 1.2E-36 4.2E-41 380.3 31.5 449 7-466 81-632 (1724)
9 3eiq_A Eukaryotic initiation f 100.0 2.5E-38 8.7E-43 347.4 14.1 313 5-351 62-391 (414)
10 3pey_A ATP-dependent RNA helic 100.0 6.3E-37 2.1E-41 333.6 24.6 318 5-349 27-358 (395)
11 3fht_A ATP-dependent RNA helic 100.0 5E-37 1.7E-41 336.8 23.2 317 6-348 48-380 (412)
12 2z83_A Helicase/nucleoside tri 100.0 5.5E-38 1.9E-42 349.2 14.6 296 10-347 11-313 (459)
13 4f92_B U5 small nuclear ribonu 100.0 4.1E-36 1.4E-40 375.6 30.8 451 7-465 928-1462(1724)
14 4a4z_A Antiviral helicase SKI2 100.0 8.6E-38 3E-42 375.1 13.8 384 4-407 38-559 (997)
15 2db3_A ATP-dependent RNA helic 100.0 3.5E-36 1.2E-40 333.0 25.1 308 6-348 79-408 (434)
16 2jlq_A Serine protease subunit 100.0 4.6E-37 1.6E-41 341.2 16.6 291 14-346 12-310 (451)
17 1s2m_A Putative ATP-dependent 100.0 6E-36 2E-40 327.3 25.3 311 6-351 44-369 (400)
18 1hv8_A Putative ATP-dependent 100.0 5.9E-36 2E-40 322.7 22.6 310 5-351 28-349 (367)
19 2j0s_A ATP-dependent RNA helic 100.0 3E-36 1E-40 330.9 20.6 311 6-350 60-386 (410)
20 3fmp_B ATP-dependent RNA helic 100.0 8.9E-37 3E-41 342.3 14.3 317 6-348 115-447 (479)
21 1xti_A Probable ATP-dependent 100.0 1.5E-35 5.1E-40 322.9 23.5 311 6-349 31-359 (391)
22 2whx_A Serine protease/ntpase/ 100.0 2.7E-36 9.2E-41 345.4 17.0 299 3-346 172-477 (618)
23 3rc3_A ATP-dependent RNA helic 100.0 1.1E-36 3.9E-41 349.6 12.2 315 18-377 153-476 (677)
24 2v1x_A ATP-dependent DNA helic 100.0 1.2E-35 4.2E-40 338.9 20.0 310 6-351 45-378 (591)
25 2v6i_A RNA helicase; membrane, 100.0 3.7E-36 1.3E-40 331.9 14.4 284 19-345 1-288 (431)
26 2i4i_A ATP-dependent RNA helic 100.0 7.4E-36 2.5E-40 328.3 16.0 312 6-351 38-387 (417)
27 2xgj_A ATP-dependent RNA helic 100.0 5.5E-35 1.9E-39 350.9 21.5 325 4-347 85-499 (1010)
28 1fuu_A Yeast initiation factor 100.0 3.7E-36 1.3E-40 327.8 8.4 314 5-351 43-370 (394)
29 2ykg_A Probable ATP-dependent 100.0 3.4E-35 1.2E-39 344.6 16.4 319 5-349 13-518 (696)
30 3fho_A ATP-dependent RNA helic 100.0 1.3E-35 4.6E-40 334.6 11.6 316 6-347 142-470 (508)
31 1yks_A Genome polyprotein [con 100.0 1.7E-34 5.9E-39 319.2 19.5 289 16-345 4-297 (440)
32 3i5x_A ATP-dependent RNA helic 100.0 2.4E-34 8.1E-39 329.2 20.9 318 6-350 95-452 (563)
33 2z0m_A 337AA long hypothetical 100.0 1.2E-34 4.1E-39 308.8 16.7 297 5-345 16-321 (337)
34 3sqw_A ATP-dependent RNA helic 100.0 3.8E-34 1.3E-38 328.2 21.0 317 6-349 44-400 (579)
35 4a2p_A RIG-I, retinoic acid in 100.0 1.7E-33 6E-38 321.0 20.7 330 1-351 3-512 (556)
36 1oyw_A RECQ helicase, ATP-depe 100.0 4.2E-34 1.4E-38 322.8 15.2 304 6-350 26-346 (523)
37 3oiy_A Reverse gyrase helicase 100.0 1.8E-33 6.1E-38 309.4 17.3 296 4-345 20-363 (414)
38 3tbk_A RIG-I helicase domain; 100.0 2.1E-33 7E-38 320.0 18.2 327 3-350 2-510 (555)
39 2wv9_A Flavivirin protease NS2 100.0 3.4E-33 1.2E-37 321.8 19.9 287 18-345 239-531 (673)
40 1wp9_A ATP-dependent RNA helic 100.0 4.8E-33 1.7E-37 310.5 20.2 317 4-351 8-479 (494)
41 4gl2_A Interferon-induced heli 100.0 4.7E-33 1.6E-37 326.6 8.9 320 3-346 5-518 (699)
42 4a2q_A RIG-I, retinoic acid in 100.0 1.5E-31 5.1E-36 317.5 21.2 327 4-350 247-752 (797)
43 4a2w_A RIG-I, retinoic acid in 100.0 2.7E-30 9.2E-35 310.3 22.4 326 4-350 247-752 (936)
44 2eyq_A TRCF, transcription-rep 100.0 3.1E-29 1.1E-33 305.3 24.5 298 6-347 604-922 (1151)
45 4ddu_A Reverse gyrase; topoiso 100.0 3E-30 1E-34 312.3 13.8 269 5-302 78-388 (1104)
46 1gm5_A RECG; helicase, replica 100.0 9.3E-31 3.2E-35 305.0 7.2 300 5-345 368-695 (780)
47 2fwr_A DNA repair protein RAD2 100.0 2.2E-29 7.6E-34 281.6 13.1 294 4-351 92-458 (472)
48 1gku_B Reverse gyrase, TOP-RG; 100.0 2.2E-29 7.7E-34 304.8 13.2 262 8-302 59-353 (1054)
49 2oca_A DAR protein, ATP-depend 100.0 2E-29 6.9E-34 284.7 10.1 302 5-345 113-453 (510)
50 1tf5_A Preprotein translocase 99.9 4E-26 1.4E-30 261.2 22.3 304 6-348 84-546 (844)
51 3llm_A ATP-dependent RNA helic 99.9 2E-26 6.9E-31 233.2 16.7 172 3-177 59-235 (235)
52 3h1t_A Type I site-specific re 99.9 2.7E-26 9.1E-31 263.8 18.5 300 5-337 178-545 (590)
53 2fsf_A Preprotein translocase 99.9 2.8E-25 9.4E-30 253.6 19.3 308 6-348 75-584 (853)
54 1nkt_A Preprotein translocase 99.9 1.3E-24 4.4E-29 248.3 20.6 307 6-349 112-619 (922)
55 3eaq_A Heat resistant RNA depe 99.9 2.1E-25 7.4E-30 221.8 8.4 173 201-404 19-211 (212)
56 3i32_A Heat resistant RNA depe 99.9 9.6E-25 3.3E-29 227.6 6.3 174 205-409 20-213 (300)
57 3dmq_A RNA polymerase-associat 99.9 7.5E-24 2.6E-28 254.8 13.8 313 4-349 152-617 (968)
58 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 1.2E-21 4E-26 234.2 19.8 305 6-338 272-695 (1038)
59 1z63_A Helicase of the SNF2/RA 99.9 3.8E-22 1.3E-26 224.5 14.5 308 6-351 38-457 (500)
60 1c4o_A DNA nucleotide excision 99.8 3.9E-19 1.3E-23 205.4 27.0 115 212-349 438-552 (664)
61 3jux_A Protein translocase sub 99.8 3.3E-19 1.1E-23 199.7 22.9 164 151-349 410-589 (822)
62 1z3i_X Similar to RAD54-like; 99.8 7.3E-19 2.5E-23 203.1 21.6 113 211-351 414-532 (644)
63 3mwy_W Chromo domain-containin 99.8 7.5E-19 2.6E-23 208.1 17.5 312 4-351 235-688 (800)
64 2rb4_A ATP-dependent RNA helic 99.8 9.8E-19 3.3E-23 168.2 10.9 129 200-350 21-150 (175)
65 2hjv_A ATP-dependent RNA helic 99.8 1.1E-18 3.6E-23 166.0 10.2 113 210-350 32-145 (163)
66 3iuy_A Probable ATP-dependent 99.8 1.9E-18 6.4E-23 173.5 11.9 165 6-172 43-223 (228)
67 1fuk_A Eukaryotic initiation f 99.8 1E-18 3.5E-23 166.4 9.3 118 205-350 22-140 (165)
68 1qde_A EIF4A, translation init 99.8 3.4E-18 1.2E-22 171.0 13.1 176 5-182 36-221 (224)
69 2d7d_A Uvrabc system protein B 99.8 2E-18 6.7E-23 199.4 12.9 171 150-349 386-558 (661)
70 1vec_A ATP-dependent RNA helic 99.7 1.3E-17 4.4E-22 164.5 15.5 165 5-171 25-201 (206)
71 2oxc_A Probable ATP-dependent 99.7 6.4E-18 2.2E-22 170.0 13.0 170 6-176 47-227 (230)
72 3fmo_B ATP-dependent RNA helic 99.7 8E-18 2.7E-22 176.2 13.3 171 6-177 115-297 (300)
73 3dkp_A Probable ATP-dependent 99.7 1.2E-17 4.1E-22 169.5 14.2 172 6-179 52-242 (245)
74 1t5i_A C_terminal domain of A 99.7 2.7E-18 9.3E-23 164.6 8.8 118 203-348 21-139 (172)
75 1t6n_A Probable ATP-dependent 99.7 2.1E-17 7.3E-22 164.8 15.5 167 6-174 37-217 (220)
76 3ber_A Probable ATP-dependent 99.7 5.1E-18 1.8E-22 172.9 10.3 170 5-176 65-246 (249)
77 1q0u_A Bstdead; DEAD protein, 99.7 6.3E-18 2.1E-22 168.6 10.4 171 5-177 26-211 (219)
78 2pl3_A Probable ATP-dependent 99.7 9.3E-18 3.2E-22 169.4 11.3 173 5-179 47-234 (236)
79 2jgn_A DBX, DDX3, ATP-dependen 99.7 4.7E-18 1.6E-22 165.0 8.7 111 212-350 45-156 (185)
80 2p6n_A ATP-dependent RNA helic 99.7 1.1E-17 3.7E-22 163.2 11.0 117 202-347 44-161 (191)
81 3fe2_A Probable ATP-dependent 99.7 5.5E-18 1.9E-22 171.9 8.8 170 6-177 52-237 (242)
82 3ly5_A ATP-dependent RNA helic 99.7 4.9E-18 1.7E-22 174.4 7.4 156 6-164 77-246 (262)
83 3bor_A Human initiation factor 99.7 1.8E-17 6.1E-22 167.5 11.0 169 6-176 53-233 (237)
84 2gxq_A Heat resistant RNA depe 99.7 4.8E-17 1.6E-21 160.4 13.7 170 5-176 23-204 (207)
85 2yjt_D ATP-dependent RNA helic 99.5 1.3E-18 4.3E-23 166.6 0.0 119 204-350 21-140 (170)
86 1wrb_A DJVLGB; RNA helicase, D 99.6 3.6E-16 1.2E-20 159.5 11.7 170 6-177 46-239 (253)
87 3b6e_A Interferon-induced heli 99.6 4.8E-16 1.6E-20 154.0 10.8 156 3-159 31-216 (216)
88 2vl7_A XPD; helicase, unknown 99.6 1E-14 3.4E-19 165.1 16.7 128 198-343 370-518 (540)
89 2ipc_A Preprotein translocase 99.6 1.1E-13 3.8E-18 157.9 21.0 117 7-128 81-213 (997)
90 1rif_A DAR protein, DNA helica 99.5 2.4E-14 8.2E-19 148.4 9.0 150 4-162 112-264 (282)
91 2fz4_A DNA repair protein RAD2 99.5 3.5E-13 1.2E-17 135.9 13.2 138 4-162 92-230 (237)
92 3crv_A XPD/RAD3 related DNA he 99.4 1.1E-10 3.9E-15 132.2 28.2 173 151-343 316-528 (551)
93 1z5z_A Helicase of the SNF2/RA 99.2 1.1E-11 3.7E-16 127.3 6.3 113 212-351 111-228 (271)
94 4a15_A XPD helicase, ATP-depen 98.9 9.2E-09 3.2E-13 117.7 15.2 130 197-343 433-581 (620)
95 1w36_D RECD, exodeoxyribonucle 98.3 2.2E-06 7.5E-11 97.9 10.6 140 8-158 152-297 (608)
96 3e1s_A Exodeoxyribonuclease V, 98.0 1.3E-05 4.6E-10 90.5 10.2 122 5-157 189-313 (574)
97 3gfo_A Cobalt import ATP-bindi 97.9 3.7E-06 1.3E-10 85.9 3.5 62 99-161 143-205 (275)
98 3ec2_A DNA replication protein 97.9 3.2E-05 1.1E-09 73.6 9.3 27 19-45 37-63 (180)
99 2pcj_A ABC transporter, lipopr 97.9 8.4E-06 2.9E-10 80.8 5.0 61 99-160 140-200 (224)
100 1vpl_A ABC transporter, ATP-bi 97.8 5.1E-06 1.7E-10 84.1 2.8 68 98-168 145-212 (256)
101 3upu_A ATP-dependent DNA helic 97.8 2.6E-05 9E-10 86.0 8.5 129 6-157 26-162 (459)
102 3tui_C Methionine import ATP-b 97.8 6.1E-06 2.1E-10 87.2 3.2 61 100-161 164-225 (366)
103 2ff7_A Alpha-hemolysin translo 97.8 7.8E-06 2.7E-10 82.3 3.8 61 99-161 145-205 (247)
104 3tif_A Uncharacterized ABC tra 97.8 5.6E-05 1.9E-09 75.4 9.5 63 98-161 144-207 (235)
105 3nh6_A ATP-binding cassette SU 97.8 5.1E-06 1.7E-10 86.1 1.4 59 100-160 191-249 (306)
106 1sgw_A Putative ABC transporte 97.8 2.1E-05 7.2E-10 77.2 5.7 140 17-161 32-194 (214)
107 2nq2_C Hypothetical ABC transp 97.8 0.00012 4.1E-09 73.8 11.3 148 17-169 28-196 (253)
108 4g1u_C Hemin import ATP-bindin 97.7 1.1E-05 3.6E-10 82.2 3.2 149 17-169 34-215 (266)
109 1g6h_A High-affinity branched- 97.7 7.7E-06 2.6E-10 82.9 2.1 62 99-161 153-214 (257)
110 2olj_A Amino acid ABC transpor 97.7 0.0001 3.5E-09 74.7 10.3 68 99-169 159-226 (263)
111 2ixe_A Antigen peptide transpo 97.7 2.1E-05 7.2E-10 80.2 4.6 61 99-160 156-217 (271)
112 2b8t_A Thymidine kinase; deoxy 97.7 0.0002 6.9E-09 70.5 11.2 115 18-158 10-124 (223)
113 1ji0_A ABC transporter; ATP bi 97.7 1.7E-05 5.7E-10 79.5 3.5 61 99-160 139-199 (240)
114 2w0m_A SSO2452; RECA, SSPF, un 97.6 8.2E-05 2.8E-09 73.4 7.8 45 11-55 13-58 (235)
115 1z47_A CYSA, putative ABC-tran 97.6 0.00031 1.1E-08 74.1 12.2 61 99-160 145-206 (355)
116 2kjq_A DNAA-related protein; s 97.6 6E-05 2E-09 69.5 5.8 27 19-45 35-61 (149)
117 2yz2_A Putative ABC transporte 97.6 2.3E-05 7.8E-10 79.8 3.0 62 99-161 138-199 (266)
118 3fvq_A Fe(3+) IONS import ATP- 97.6 0.00035 1.2E-08 73.8 11.9 61 99-160 138-199 (359)
119 3rlf_A Maltose/maltodextrin im 97.6 0.00019 6.5E-09 76.3 9.9 60 100-160 134-194 (381)
120 3b5x_A Lipid A export ATP-bind 97.6 6.8E-05 2.3E-09 85.2 6.9 61 99-161 480-540 (582)
121 2ihy_A ABC transporter, ATP-bi 97.6 0.00015 5E-09 74.2 8.8 62 99-161 161-224 (279)
122 1b0u_A Histidine permease; ABC 97.6 8.9E-06 3E-10 82.6 -0.4 60 100-160 154-213 (262)
123 2qi9_C Vitamin B12 import ATP- 97.6 2.5E-05 8.4E-10 78.6 2.7 147 17-168 23-199 (249)
124 2it1_A 362AA long hypothetical 97.5 0.00047 1.6E-08 73.0 11.7 61 99-160 133-194 (362)
125 3qf4_B Uncharacterized ABC tra 97.5 4E-05 1.4E-09 87.4 3.6 60 100-161 492-551 (598)
126 2yyz_A Sugar ABC transporter, 97.5 0.00048 1.6E-08 72.8 11.6 61 99-160 133-194 (359)
127 1v43_A Sugar-binding transport 97.5 2.3E-05 7.9E-10 83.4 1.4 60 100-160 142-202 (372)
128 2d2e_A SUFC protein; ABC-ATPas 97.5 2E-05 6.8E-10 79.5 0.8 61 100-161 144-204 (250)
129 1mv5_A LMRA, multidrug resista 97.5 8E-05 2.7E-09 74.7 5.0 61 98-160 138-198 (243)
130 2ghi_A Transport protein; mult 97.5 3.6E-05 1.2E-09 78.1 2.4 61 99-161 155-215 (260)
131 2onk_A Molybdate/tungstate ABC 97.5 0.00038 1.3E-08 69.5 9.7 61 99-160 126-187 (240)
132 2pze_A Cystic fibrosis transme 97.4 8.3E-05 2.8E-09 73.8 4.7 140 17-160 31-190 (229)
133 3qf4_A ABC transporter, ATP-bi 97.4 0.00024 8.1E-09 80.7 9.0 60 100-161 480-539 (587)
134 2cbz_A Multidrug resistance-as 97.4 0.00018 6.1E-09 71.8 7.1 140 17-161 28-190 (237)
135 1g29_1 MALK, maltose transport 97.4 0.00063 2.2E-08 72.4 11.7 60 100-160 140-200 (372)
136 2pjz_A Hypothetical protein ST 97.4 0.00018 6E-09 73.0 6.9 60 97-160 126-185 (263)
137 4gp7_A Metallophosphoesterase; 97.4 4.7E-05 1.6E-09 71.9 2.4 23 17-39 6-28 (171)
138 2zu0_C Probable ATP-dependent 97.4 0.00034 1.2E-08 71.1 8.9 61 100-161 165-225 (267)
139 3kl4_A SRP54, signal recogniti 97.4 0.00097 3.3E-08 72.2 12.7 123 20-160 97-223 (433)
140 3b60_A Lipid A export ATP-bind 97.4 5.1E-05 1.7E-09 86.2 2.7 61 99-161 480-540 (582)
141 1oxx_K GLCV, glucose, ABC tran 97.4 0.00054 1.8E-08 72.4 10.1 61 99-160 140-201 (353)
142 3d31_A Sulfate/molybdate ABC t 97.4 0.00026 8.8E-09 74.6 7.6 140 17-160 23-188 (348)
143 1fnn_A CDC6P, cell division co 97.4 0.00071 2.4E-08 72.2 11.3 116 22-160 46-169 (389)
144 1cr0_A DNA primase/helicase; R 97.4 0.00052 1.8E-08 70.7 9.8 45 10-54 25-69 (296)
145 2orw_A Thymidine kinase; TMTK, 97.4 0.00034 1.2E-08 66.9 7.7 39 19-58 2-40 (184)
146 3te6_A Regulatory protein SIR3 97.3 0.00098 3.3E-08 69.2 11.6 123 19-161 44-174 (318)
147 3j16_B RLI1P; ribosome recycli 97.3 0.00049 1.7E-08 78.0 10.1 63 97-160 219-281 (608)
148 2pt7_A CAG-ALFA; ATPase, prote 97.3 0.00066 2.2E-08 71.2 10.3 117 11-164 162-279 (330)
149 3jvv_A Twitching mobility prot 97.3 0.00065 2.2E-08 71.9 10.0 38 17-54 120-157 (356)
150 2ehv_A Hypothetical protein PH 97.3 0.00027 9.3E-09 70.6 6.8 27 16-42 26-52 (251)
151 4a82_A Cystic fibrosis transme 97.3 5.1E-05 1.7E-09 86.1 1.3 60 100-161 478-537 (578)
152 2w58_A DNAI, primosome compone 97.3 0.00075 2.6E-08 65.1 9.4 25 21-45 55-79 (202)
153 2yl4_A ATP-binding cassette SU 97.2 7.2E-05 2.5E-09 85.2 1.8 60 99-160 483-542 (595)
154 3dm5_A SRP54, signal recogniti 97.2 0.0013 4.5E-08 71.1 11.4 123 20-160 100-224 (443)
155 2px0_A Flagellar biosynthesis 97.2 0.0011 3.7E-08 68.4 10.2 127 19-168 104-232 (296)
156 4a74_A DNA repair and recombin 97.2 0.0003 1E-08 69.3 5.7 30 16-45 21-50 (231)
157 1vma_A Cell division protein F 97.2 0.0021 7.1E-08 66.5 12.0 126 19-161 103-235 (306)
158 2cvh_A DNA repair and recombin 97.2 0.00073 2.5E-08 65.9 7.9 32 11-42 10-42 (220)
159 3ozx_A RNAse L inhibitor; ATP 97.2 0.00049 1.7E-08 77.0 7.3 141 17-161 291-447 (538)
160 1nlf_A Regulatory protein REPA 97.2 0.00079 2.7E-08 68.8 8.3 29 16-44 26-54 (279)
161 1xx6_A Thymidine kinase; NESG, 97.1 0.00075 2.6E-08 64.8 7.5 40 18-58 6-45 (191)
162 1yqt_A RNAse L inhibitor; ATP- 97.1 0.00096 3.3E-08 74.7 9.5 61 99-160 158-218 (538)
163 1a5t_A Delta prime, HOLB; zinc 97.1 0.0014 4.9E-08 68.7 10.4 34 12-45 13-49 (334)
164 4aby_A DNA repair protein RECN 97.1 0.0018 6.1E-08 70.1 11.4 59 100-160 296-356 (415)
165 3bk7_A ABC transporter ATP-bin 97.1 0.002 7E-08 73.0 12.2 137 17-160 379-532 (607)
166 1njg_A DNA polymerase III subu 97.1 0.0023 7.9E-08 62.8 11.2 36 10-45 32-70 (250)
167 2bbs_A Cystic fibrosis transme 97.1 0.00021 7.1E-09 73.5 3.5 140 17-160 61-219 (290)
168 1yqt_A RNAse L inhibitor; ATP- 97.1 0.00065 2.2E-08 76.1 7.8 144 17-169 309-469 (538)
169 3n70_A Transport activator; si 97.1 0.0016 5.6E-08 59.3 9.2 37 7-43 11-47 (145)
170 3gd7_A Fusion complex of cysti 97.1 9.5E-05 3.2E-09 79.2 0.4 59 100-160 156-214 (390)
171 1ye8_A Protein THEP1, hypothet 97.0 0.0023 7.7E-08 60.7 9.7 69 97-168 74-149 (178)
172 3j16_B RLI1P; ribosome recycli 97.0 0.0026 8.8E-08 72.1 11.8 137 19-161 377-529 (608)
173 3bk7_A ABC transporter ATP-bin 97.0 0.0013 4.5E-08 74.5 9.1 61 99-160 228-288 (607)
174 4f4c_A Multidrug resistance pr 97.0 0.0019 6.7E-08 80.0 11.3 60 100-161 555-614 (1321)
175 3ozx_A RNAse L inhibitor; ATP 97.0 0.00073 2.5E-08 75.6 6.8 63 97-161 136-198 (538)
176 3co5_A Putative two-component 97.0 0.00085 2.9E-08 61.1 6.1 34 7-40 14-47 (143)
177 2chg_A Replication factor C sm 97.0 0.0066 2.2E-07 58.6 13.0 35 9-43 25-61 (226)
178 2v1u_A Cell division control p 97.0 0.0019 6.4E-08 68.7 9.6 26 19-44 43-68 (387)
179 1l8q_A Chromosomal replication 97.0 0.0044 1.5E-07 64.6 11.9 25 20-44 37-61 (324)
180 3bos_A Putative DNA replicatio 96.9 0.0027 9.2E-08 62.5 9.8 26 19-44 51-76 (242)
181 1sxj_E Activator 1 40 kDa subu 96.9 0.0032 1.1E-07 66.3 10.9 43 115-160 132-174 (354)
182 2o0j_A Terminase, DNA packagin 96.9 0.01 3.5E-07 63.1 14.6 69 4-72 162-231 (385)
183 3e70_C DPA, signal recognition 96.9 0.0018 6E-08 67.7 8.4 128 18-162 127-255 (328)
184 4f4c_A Multidrug resistance pr 96.9 0.00019 6.4E-09 89.0 0.8 60 100-161 1218-1277(1321)
185 1n0w_A DNA repair protein RAD5 96.9 0.0013 4.5E-08 65.1 6.9 34 11-44 14-48 (243)
186 3cpe_A Terminase, DNA packagin 96.9 0.011 3.6E-07 67.2 15.0 71 4-74 162-233 (592)
187 3vkw_A Replicase large subunit 96.9 0.0011 3.8E-08 71.5 6.5 107 19-158 160-268 (446)
188 1ls1_A Signal recognition part 96.9 0.0037 1.3E-07 64.4 10.2 125 19-161 97-223 (295)
189 2qgz_A Helicase loader, putati 96.8 0.0012 4.2E-08 68.4 6.1 26 20-45 152-177 (308)
190 2r6a_A DNAB helicase, replicat 96.8 0.0019 6.4E-08 70.9 7.7 45 11-55 194-238 (454)
191 2qby_A CDC6 homolog 1, cell di 96.8 0.0013 4.3E-08 70.0 6.1 25 20-44 45-69 (386)
192 1pzn_A RAD51, DNA repair and r 96.8 0.00093 3.2E-08 70.6 4.8 29 16-44 127-155 (349)
193 3g5u_A MCG1178, multidrug resi 96.7 0.00034 1.1E-08 86.5 1.5 59 100-160 527-585 (1284)
194 2bjv_A PSP operon transcriptio 96.7 0.011 3.9E-07 59.4 12.5 35 11-45 20-54 (265)
195 2gk6_A Regulator of nonsense t 96.7 0.0021 7E-08 73.6 7.7 66 6-71 181-246 (624)
196 2j9r_A Thymidine kinase; TK1, 96.7 0.0018 6.1E-08 62.9 6.0 42 18-60 26-67 (214)
197 4b3f_X DNA-binding protein smu 96.7 0.002 6.9E-08 74.0 7.4 65 6-71 190-255 (646)
198 2yhs_A FTSY, cell division pro 96.7 0.009 3.1E-07 65.3 12.0 128 18-163 291-426 (503)
199 1jr3_A DNA polymerase III subu 96.7 0.0073 2.5E-07 63.9 11.1 35 11-45 26-63 (373)
200 2qby_B CDC6 homolog 3, cell di 96.6 0.0021 7.2E-08 68.5 6.7 25 20-44 45-69 (384)
201 3syl_A Protein CBBX; photosynt 96.6 0.0097 3.3E-07 61.3 10.9 24 20-43 67-90 (309)
202 3u61_B DNA polymerase accessor 96.5 0.015 5.2E-07 60.3 12.2 34 11-44 36-72 (324)
203 3ux8_A Excinuclease ABC, A sub 96.5 0.0032 1.1E-07 72.6 7.6 62 99-161 202-265 (670)
204 2wjy_A Regulator of nonsense t 96.5 0.0035 1.2E-07 73.4 7.8 66 6-71 357-422 (800)
205 3g5u_A MCG1178, multidrug resi 96.5 0.0021 7.1E-08 79.5 6.2 60 100-161 1172-1231(1284)
206 3k1j_A LON protease, ATP-depen 96.5 0.032 1.1E-06 63.4 15.5 39 9-47 49-87 (604)
207 2iw3_A Elongation factor 3A; a 96.5 0.0078 2.7E-07 71.2 10.4 133 17-168 458-611 (986)
208 1sxj_C Activator 1 40 kDa subu 96.5 0.006 2.1E-07 64.0 8.6 34 11-44 35-70 (340)
209 1ojl_A Transcriptional regulat 96.4 0.01 3.5E-07 61.3 10.2 36 9-44 14-49 (304)
210 2xzl_A ATP-dependent helicase 96.4 0.0025 8.4E-08 74.8 6.0 66 6-71 361-426 (802)
211 2qen_A Walker-type ATPase; unk 96.4 0.016 5.5E-07 60.4 11.6 36 9-44 20-55 (350)
212 2orv_A Thymidine kinase; TP4A 96.4 0.005 1.7E-07 60.3 6.9 40 19-59 18-57 (234)
213 1iqp_A RFCS; clamp loader, ext 96.4 0.012 4.1E-07 60.9 10.3 34 10-43 34-69 (327)
214 3eie_A Vacuolar protein sortin 96.4 0.01 3.5E-07 61.8 9.7 25 20-44 51-75 (322)
215 1sxj_D Activator 1 41 kDa subu 96.4 0.0035 1.2E-07 65.9 6.2 34 10-43 46-81 (353)
216 2z4s_A Chromosomal replication 96.4 0.025 8.4E-07 61.6 13.0 25 20-44 130-154 (440)
217 2zpa_A Uncharacterized protein 96.3 0.0062 2.1E-07 69.0 8.1 112 7-162 177-290 (671)
218 2q6t_A DNAB replication FORK h 96.3 0.0081 2.8E-07 65.6 8.7 65 11-76 191-256 (444)
219 1w4r_A Thymidine kinase; type 96.3 0.0044 1.5E-07 59.2 5.6 39 19-58 19-57 (195)
220 3lda_A DNA repair protein RAD5 96.2 0.0038 1.3E-07 67.0 5.6 29 16-44 174-202 (400)
221 4fcw_A Chaperone protein CLPB; 96.2 0.01 3.5E-07 61.1 8.6 26 21-46 48-73 (311)
222 1sxj_A Activator 1 95 kDa subu 96.2 0.01 3.5E-07 66.2 9.2 25 20-44 77-101 (516)
223 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.012 3.9E-07 61.4 9.0 25 20-44 45-69 (322)
224 3b9p_A CG5977-PA, isoform A; A 96.2 0.016 5.3E-07 59.4 9.9 26 19-44 53-78 (297)
225 3vfd_A Spastin; ATPase, microt 96.2 0.014 4.7E-07 62.6 9.8 25 20-44 148-172 (389)
226 2qp9_X Vacuolar protein sortin 96.2 0.016 5.4E-07 61.3 10.0 25 20-44 84-108 (355)
227 3h4m_A Proteasome-activating n 96.1 0.01 3.5E-07 60.4 8.1 27 18-44 49-75 (285)
228 3b85_A Phosphate starvation-in 96.1 0.0028 9.5E-08 61.7 3.4 42 5-47 7-48 (208)
229 1hqc_A RUVB; extended AAA-ATPa 96.1 0.023 7.9E-07 58.8 10.7 25 20-44 38-62 (324)
230 1tf7_A KAIC; homohexamer, hexa 96.1 0.004 1.4E-07 69.6 5.1 132 16-160 277-417 (525)
231 3pfi_A Holliday junction ATP-d 96.1 0.025 8.6E-07 59.0 10.9 24 21-44 56-79 (338)
232 2eyu_A Twitching motility prot 96.0 0.0027 9.1E-08 64.2 2.9 41 17-57 22-63 (261)
233 1j8m_F SRP54, signal recogniti 96.0 0.023 7.9E-07 58.4 10.0 123 20-160 98-224 (297)
234 3e2i_A Thymidine kinase; Zn-bi 96.0 0.0061 2.1E-07 59.0 5.0 41 18-59 26-66 (219)
235 3thx_A DNA mismatch repair pro 95.9 0.019 6.4E-07 68.1 10.0 46 115-161 739-786 (934)
236 3thx_B DNA mismatch repair pro 95.9 0.048 1.6E-06 64.5 13.0 51 115-166 750-802 (918)
237 2gno_A DNA polymerase III, gam 95.9 0.016 5.5E-07 59.8 8.1 50 105-157 70-119 (305)
238 1zu4_A FTSY; GTPase, signal re 95.8 0.052 1.8E-06 56.3 11.7 43 19-62 104-148 (320)
239 1w5s_A Origin recognition comp 95.8 0.01 3.6E-07 63.6 6.7 26 19-44 49-76 (412)
240 1d2n_A N-ethylmaleimide-sensit 95.8 0.0095 3.2E-07 60.3 5.9 25 20-44 64-88 (272)
241 1tf7_A KAIC; homohexamer, hexa 95.8 0.0071 2.4E-07 67.6 5.4 31 11-41 29-60 (525)
242 2zr9_A Protein RECA, recombina 95.7 0.04 1.4E-06 57.9 10.4 38 16-54 57-94 (349)
243 2fna_A Conserved hypothetical 95.7 0.048 1.7E-06 56.8 11.0 34 9-44 21-54 (357)
244 1sxj_B Activator 1 37 kDa subu 95.6 0.02 7E-07 59.0 7.9 34 10-43 30-65 (323)
245 1p9r_A General secretion pathw 95.6 0.012 4E-07 63.6 6.0 40 18-57 165-204 (418)
246 3hr8_A Protein RECA; alpha and 95.6 0.047 1.6E-06 57.4 10.4 39 16-55 57-95 (356)
247 2gza_A Type IV secretion syste 95.6 0.012 4E-07 62.5 5.7 44 11-55 166-209 (361)
248 2iw3_A Elongation factor 3A; a 95.6 0.013 4.4E-07 69.4 6.5 63 100-168 902-964 (986)
249 3b9q_A Chloroplast SRP recepto 95.5 0.015 5.1E-07 59.9 6.2 56 18-73 98-154 (302)
250 3d8b_A Fidgetin-like protein 1 95.5 0.021 7.1E-07 60.4 7.5 26 19-44 116-141 (357)
251 2chq_A Replication factor C sm 95.5 0.01 3.4E-07 61.2 4.8 35 10-44 26-62 (319)
252 3pvs_A Replication-associated 95.5 0.032 1.1E-06 60.8 8.9 32 13-44 41-74 (447)
253 2v9p_A Replication protein E1; 95.4 0.013 4.6E-07 60.2 5.5 41 12-56 118-158 (305)
254 2ffh_A Protein (FFH); SRP54, s 95.4 0.067 2.3E-06 57.6 11.2 122 20-159 98-221 (425)
255 1e69_A Chromosome segregation 95.4 0.039 1.3E-06 57.4 9.1 62 97-160 217-282 (322)
256 2qz4_A Paraplegin; AAA+, SPG7, 95.4 0.023 7.9E-07 56.7 7.1 26 19-44 38-63 (262)
257 3cf0_A Transitional endoplasmi 95.4 0.025 8.7E-07 58.1 7.5 27 18-44 47-73 (301)
258 1znw_A Guanylate kinase, GMP k 95.4 0.0099 3.4E-07 57.5 4.1 30 15-44 15-44 (207)
259 2oap_1 GSPE-2, type II secreti 95.4 0.015 5E-07 64.6 5.8 42 12-54 252-293 (511)
260 1ewq_A DNA mismatch repair pro 95.3 0.016 5.4E-07 67.3 6.2 24 20-43 576-599 (765)
261 4a1f_A DNAB helicase, replicat 95.3 0.028 9.4E-07 58.8 7.4 58 10-69 36-93 (338)
262 1htw_A HI0065; nucleotide-bind 95.3 0.012 4E-07 54.6 4.0 27 18-44 31-57 (158)
263 3tr0_A Guanylate kinase, GMP k 95.3 0.011 3.8E-07 56.7 4.1 28 17-44 4-31 (205)
264 2og2_A Putative signal recogni 95.2 0.02 7E-07 60.3 6.2 55 19-73 156-211 (359)
265 1kgd_A CASK, peripheral plasma 95.2 0.013 4.4E-07 55.3 4.2 27 18-44 3-29 (180)
266 3ux8_A Excinuclease ABC, A sub 95.1 0.055 1.9E-06 62.3 9.9 62 99-161 543-607 (670)
267 3lfu_A DNA helicase II; SF1 he 95.1 0.021 7.1E-07 65.5 6.3 68 6-75 10-80 (647)
268 3uk6_A RUVB-like 2; hexameric 95.1 0.025 8.6E-07 59.7 6.5 26 20-45 70-95 (368)
269 2ewv_A Twitching motility prot 95.1 0.01 3.5E-07 63.1 3.3 38 17-54 133-170 (372)
270 1zp6_A Hypothetical protein AT 95.0 0.011 3.8E-07 56.1 3.2 28 16-43 5-32 (191)
271 1z6g_A Guanylate kinase; struc 95.0 0.012 4.3E-07 57.4 3.6 32 13-44 16-47 (218)
272 2zan_A Vacuolar protein sortin 94.9 0.021 7.2E-07 62.3 5.5 26 19-44 166-191 (444)
273 2ce7_A Cell division protein F 94.9 0.033 1.1E-06 61.0 7.0 24 21-44 50-73 (476)
274 1lvg_A Guanylate kinase, GMP k 94.9 0.013 4.6E-07 56.2 3.4 27 18-44 2-28 (198)
275 3qkt_A DNA double-strand break 94.8 0.38 1.3E-05 50.2 14.6 60 99-159 248-313 (339)
276 2o8b_B DNA mismatch repair pro 94.8 0.058 2E-06 64.7 9.0 21 20-40 789-809 (1022)
277 1xp8_A RECA protein, recombina 94.7 0.14 4.9E-06 54.0 11.1 38 16-54 70-107 (366)
278 3pxi_A Negative regulator of g 94.7 0.11 3.9E-06 60.6 11.3 23 22-44 523-545 (758)
279 2v3c_C SRP54, signal recogniti 94.7 0.021 7.2E-07 61.8 4.6 53 21-74 100-154 (432)
280 1s96_A Guanylate kinase, GMP k 94.7 0.022 7.4E-07 55.8 4.2 30 16-45 12-41 (219)
281 2j41_A Guanylate kinase; GMP, 94.6 0.02 7E-07 54.9 3.9 28 17-44 3-30 (207)
282 3tau_A Guanylate kinase, GMP k 94.6 0.021 7.2E-07 55.2 4.0 27 18-44 6-32 (208)
283 3nbx_X ATPase RAVA; AAA+ ATPas 94.6 0.16 5.5E-06 55.9 11.4 36 9-44 30-65 (500)
284 3a00_A Guanylate kinase, GMP k 94.5 0.02 6.8E-07 54.3 3.5 26 20-45 1-26 (186)
285 3bgw_A DNAB-like replicative h 94.5 0.055 1.9E-06 58.9 7.4 45 11-56 188-232 (444)
286 3t15_A Ribulose bisphosphate c 94.4 0.082 2.8E-06 54.1 8.2 24 21-44 37-60 (293)
287 1wb9_A DNA mismatch repair pro 94.4 0.052 1.8E-06 63.4 7.3 26 18-43 605-630 (800)
288 3c8u_A Fructokinase; YP_612366 94.4 0.016 5.3E-07 56.2 2.4 37 9-45 7-47 (208)
289 3ney_A 55 kDa erythrocyte memb 94.3 0.029 1E-06 53.8 4.2 27 18-44 17-43 (197)
290 1rj9_A FTSY, signal recognitio 94.3 0.034 1.2E-06 57.3 4.9 39 19-57 101-139 (304)
291 3hu3_A Transitional endoplasmi 94.3 0.08 2.7E-06 58.3 8.1 27 18-44 236-262 (489)
292 4b4t_J 26S protease regulatory 94.2 0.11 3.8E-06 55.2 8.7 26 19-44 181-206 (405)
293 2dr3_A UPF0273 protein PH0284; 94.2 0.034 1.1E-06 54.9 4.4 39 16-54 19-57 (247)
294 1q57_A DNA primase/helicase; d 94.2 0.11 3.8E-06 57.5 9.1 64 11-75 233-297 (503)
295 3cmu_A Protein RECA, recombina 94.1 0.066 2.3E-06 67.8 7.8 40 17-57 1424-1463(2050)
296 3lnc_A Guanylate kinase, GMP k 94.1 0.013 4.5E-07 57.6 1.3 34 10-43 17-51 (231)
297 2xxa_A Signal recognition part 94.1 0.16 5.3E-06 55.0 9.9 123 21-160 101-225 (433)
298 2j37_W Signal recognition part 94.1 0.18 6.3E-06 55.5 10.4 123 21-161 102-226 (504)
299 4b4t_H 26S protease regulatory 93.9 0.092 3.2E-06 56.8 7.3 27 18-44 241-267 (467)
300 3pih_A Uvrabc system protein A 93.8 0.3 1E-05 57.6 12.2 61 100-161 806-869 (916)
301 3vaa_A Shikimate kinase, SK; s 93.8 0.043 1.5E-06 52.5 4.3 29 16-44 21-49 (199)
302 3aez_A Pantothenate kinase; tr 93.8 0.036 1.2E-06 57.4 3.9 30 17-46 87-116 (312)
303 1g5t_A COB(I)alamin adenosyltr 93.6 0.095 3.3E-06 50.0 6.2 39 20-59 28-66 (196)
304 4eun_A Thermoresistant glucoki 93.6 0.046 1.6E-06 52.4 4.1 27 18-44 27-53 (200)
305 3u4q_A ATP-dependent helicase/ 93.5 0.065 2.2E-06 66.1 6.2 69 4-74 9-82 (1232)
306 1uaa_A REP helicase, protein ( 93.3 0.063 2.2E-06 61.8 5.3 68 6-75 3-73 (673)
307 2qor_A Guanylate kinase; phosp 93.3 0.048 1.7E-06 52.4 3.7 28 17-44 9-36 (204)
308 3asz_A Uridine kinase; cytidin 93.3 0.044 1.5E-06 52.8 3.4 27 18-44 4-30 (211)
309 4b4t_L 26S protease subunit RP 93.2 0.15 5E-06 55.1 7.5 26 19-44 214-239 (437)
310 1ypw_A Transitional endoplasmi 93.1 0.12 4.1E-06 60.6 7.4 28 17-44 235-262 (806)
311 1kag_A SKI, shikimate kinase I 93.1 0.057 2E-06 50.1 3.8 26 19-44 3-28 (173)
312 1qvr_A CLPB protein; coiled co 93.1 0.18 6.3E-06 59.6 9.0 33 12-44 181-215 (854)
313 2zts_A Putative uncharacterize 93.1 0.036 1.2E-06 54.7 2.5 29 16-44 26-54 (251)
314 1jbk_A CLPB protein; beta barr 93.1 0.11 3.7E-06 48.5 5.7 36 9-44 30-67 (195)
315 1sq5_A Pantothenate kinase; P- 93.1 0.13 4.4E-06 53.0 6.7 28 18-45 78-105 (308)
316 3uie_A Adenylyl-sulfate kinase 93.0 0.075 2.6E-06 50.8 4.4 30 16-45 21-50 (200)
317 2i3b_A HCR-ntpase, human cance 92.9 0.046 1.6E-06 52.1 2.7 26 20-45 1-26 (189)
318 3kta_A Chromosome segregation 92.9 0.084 2.9E-06 49.4 4.6 25 21-45 27-51 (182)
319 2bdt_A BH3686; alpha-beta prot 92.8 0.045 1.6E-06 51.7 2.6 23 20-42 2-24 (189)
320 4b4t_K 26S protease regulatory 92.8 0.15 5E-06 55.0 6.8 25 20-44 206-230 (428)
321 2jeo_A Uridine-cytidine kinase 92.7 0.058 2E-06 53.5 3.4 29 16-44 21-49 (245)
322 1rz3_A Hypothetical protein rb 92.7 0.13 4.3E-06 49.3 5.6 26 19-44 21-46 (201)
323 4b4t_I 26S protease regulatory 92.7 0.18 6E-06 54.1 7.1 25 20-44 216-240 (437)
324 2obl_A ESCN; ATPase, hydrolase 92.7 0.12 4.1E-06 54.2 5.8 33 15-47 66-98 (347)
325 3tqc_A Pantothenate kinase; bi 92.7 0.19 6.5E-06 52.0 7.2 24 22-45 94-117 (321)
326 2qm8_A GTPase/ATPase; G protei 92.6 0.081 2.8E-06 55.3 4.5 34 17-50 52-85 (337)
327 1knq_A Gluconate kinase; ALFA/ 92.6 0.066 2.3E-06 49.8 3.5 26 19-44 7-32 (175)
328 3umf_A Adenylate kinase; rossm 92.6 0.07 2.4E-06 52.0 3.7 29 16-44 25-53 (217)
329 4eaq_A DTMP kinase, thymidylat 92.5 0.16 5.5E-06 49.8 6.2 30 17-46 23-52 (229)
330 2vf7_A UVRA2, excinuclease ABC 92.4 0.25 8.6E-06 57.7 8.6 62 99-161 730-794 (842)
331 1nij_A Hypothetical protein YJ 92.4 0.065 2.2E-06 55.5 3.3 34 21-57 5-38 (318)
332 2p65_A Hypothetical protein PF 92.4 0.12 4.2E-06 47.9 5.0 34 11-44 32-67 (187)
333 1qvr_A CLPB protein; coiled co 92.3 0.31 1.1E-05 57.6 9.5 24 21-44 589-612 (854)
334 1tq4_A IIGP1, interferon-induc 92.3 0.11 3.8E-06 55.7 5.1 27 22-48 71-97 (413)
335 3cf2_A TER ATPase, transitiona 92.3 0.28 9.7E-06 57.0 8.8 25 20-44 238-262 (806)
336 1r6b_X CLPA protein; AAA+, N-t 92.3 0.23 7.7E-06 58.0 8.1 23 22-44 490-512 (758)
337 3trf_A Shikimate kinase, SK; a 92.1 0.1 3.5E-06 48.9 4.2 25 20-44 5-29 (185)
338 3cmu_A Protein RECA, recombina 92.1 0.23 7.8E-06 63.0 8.2 38 16-54 1077-1114(2050)
339 2dhr_A FTSH; AAA+ protein, hex 92.1 0.51 1.7E-05 51.9 10.2 24 21-44 65-88 (499)
340 1qhx_A CPT, protein (chloramph 92.1 0.11 3.9E-06 48.2 4.3 25 20-44 3-27 (178)
341 2vp4_A Deoxynucleoside kinase; 92.0 0.08 2.7E-06 52.0 3.3 37 18-58 18-54 (230)
342 3a8t_A Adenylate isopentenyltr 92.0 0.076 2.6E-06 55.2 3.2 25 19-43 39-63 (339)
343 2bbw_A Adenylate kinase 4, AK4 92.0 0.092 3.2E-06 52.0 3.8 26 19-44 26-51 (246)
344 2npi_A Protein CLP1; CLP1-PCF1 92.0 0.067 2.3E-06 58.4 2.9 38 12-49 130-167 (460)
345 2ygr_A Uvrabc system protein A 91.9 0.18 6E-06 59.7 6.6 61 100-161 864-927 (993)
346 3lw7_A Adenylate kinase relate 91.9 0.085 2.9E-06 48.6 3.2 20 21-40 2-21 (179)
347 3kb2_A SPBC2 prophage-derived 91.9 0.11 3.7E-06 47.9 4.0 24 22-45 3-26 (173)
348 1ex7_A Guanylate kinase; subst 91.9 0.1 3.5E-06 49.5 3.7 24 21-44 2-25 (186)
349 1zd8_A GTP:AMP phosphotransfer 91.9 0.12 4E-06 50.6 4.3 27 18-44 5-31 (227)
350 1kht_A Adenylate kinase; phosp 91.8 0.1 3.6E-06 49.0 3.8 25 20-44 3-27 (192)
351 3sop_A Neuronal-specific septi 91.8 0.091 3.1E-06 53.1 3.6 26 22-47 4-29 (270)
352 3tlx_A Adenylate kinase 2; str 91.8 0.14 4.6E-06 50.8 4.7 27 18-44 27-53 (243)
353 3cm0_A Adenylate kinase; ATP-b 91.7 0.087 3E-06 49.5 3.1 26 19-44 3-28 (186)
354 2z43_A DNA repair and recombin 91.7 0.15 5.2E-06 52.8 5.2 30 16-45 103-132 (324)
355 2ze6_A Isopentenyl transferase 91.6 0.11 3.7E-06 51.9 3.8 23 22-44 3-25 (253)
356 2c95_A Adenylate kinase 1; tra 91.6 0.14 4.8E-06 48.4 4.4 28 17-44 6-33 (196)
357 2qt1_A Nicotinamide riboside k 91.6 0.093 3.2E-06 50.4 3.2 31 13-43 14-44 (207)
358 2bwj_A Adenylate kinase 5; pho 91.6 0.12 4E-06 49.1 3.8 30 15-44 7-36 (199)
359 2yvu_A Probable adenylyl-sulfa 91.5 0.13 4.5E-06 48.4 4.1 28 18-45 11-38 (186)
360 3exa_A TRNA delta(2)-isopenten 91.5 0.11 3.6E-06 53.4 3.6 24 20-43 3-26 (322)
361 3bh0_A DNAB-like replicative h 91.5 0.15 5.1E-06 52.7 4.8 57 11-69 59-115 (315)
362 2rhm_A Putative kinase; P-loop 91.4 0.11 3.9E-06 48.9 3.5 26 19-44 4-29 (193)
363 4e22_A Cytidylate kinase; P-lo 91.4 0.14 4.7E-06 51.1 4.3 27 18-44 25-51 (252)
364 2dpy_A FLII, flagellum-specifi 91.4 0.19 6.5E-06 54.4 5.7 42 15-56 152-193 (438)
365 1pjr_A PCRA; DNA repair, DNA r 91.3 0.26 8.8E-06 57.2 7.1 67 6-74 12-81 (724)
366 3iij_A Coilin-interacting nucl 91.3 0.13 4.4E-06 48.1 3.7 27 18-44 9-35 (180)
367 2r6f_A Excinuclease ABC subuni 91.3 0.2 7E-06 58.9 6.1 61 100-161 846-909 (972)
368 2yv5_A YJEQ protein; hydrolase 91.2 0.19 6.5E-06 51.6 5.3 30 17-47 162-191 (302)
369 1f2t_A RAD50 ABC-ATPase; DNA d 91.2 0.12 4.2E-06 46.9 3.4 23 20-42 23-45 (149)
370 3sr0_A Adenylate kinase; phosp 91.1 0.13 4.5E-06 49.6 3.7 24 22-45 2-25 (206)
371 2plr_A DTMP kinase, probable t 91.1 0.25 8.5E-06 47.2 5.7 28 19-46 3-30 (213)
372 1cke_A CK, MSSA, protein (cyti 91.1 0.14 4.9E-06 49.6 4.0 25 20-44 5-29 (227)
373 1ly1_A Polynucleotide kinase; 91.1 0.13 4.3E-06 47.9 3.4 22 21-42 3-24 (181)
374 1in4_A RUVB, holliday junction 91.0 0.14 4.8E-06 53.4 4.0 24 21-44 52-75 (334)
375 2v54_A DTMP kinase, thymidylat 91.0 0.15 5.1E-06 48.5 4.0 26 19-44 3-28 (204)
376 1gvn_B Zeta; postsegregational 90.9 0.18 6.1E-06 51.3 4.7 25 20-44 33-57 (287)
377 3nwj_A ATSK2; P loop, shikimat 90.9 0.15 5.2E-06 50.7 4.0 31 15-45 40-73 (250)
378 1v5w_A DMC1, meiotic recombina 90.9 0.2 6.9E-06 52.4 5.2 29 16-44 118-146 (343)
379 2f1r_A Molybdopterin-guanine d 90.8 0.092 3.1E-06 49.1 2.2 26 21-46 3-28 (171)
380 2qmh_A HPR kinase/phosphorylas 90.8 0.12 4E-06 49.4 2.9 25 19-43 33-57 (205)
381 2pez_A Bifunctional 3'-phospho 90.7 0.13 4.6E-06 47.9 3.3 26 19-44 4-29 (179)
382 4ag6_A VIRB4 ATPase, type IV s 90.7 0.18 6.3E-06 53.7 4.7 41 19-60 34-74 (392)
383 3foz_A TRNA delta(2)-isopenten 90.6 0.15 5E-06 52.3 3.6 24 20-43 10-33 (316)
384 3euj_A Chromosome partition pr 90.5 0.17 5.9E-06 55.2 4.4 33 17-50 27-59 (483)
385 1y63_A LMAJ004144AAA protein; 90.5 0.18 6E-06 47.5 4.0 26 18-43 8-33 (184)
386 1zuh_A Shikimate kinase; alpha 90.4 0.19 6.7E-06 46.2 4.0 26 20-45 7-32 (168)
387 3t61_A Gluconokinase; PSI-biol 90.3 0.15 5.2E-06 48.6 3.4 25 20-44 18-42 (202)
388 1aky_A Adenylate kinase; ATP:A 90.3 0.2 6.7E-06 48.6 4.1 26 19-44 3-28 (220)
389 1tev_A UMP-CMP kinase; ploop, 90.2 0.17 5.8E-06 47.6 3.5 25 20-44 3-27 (196)
390 1nn5_A Similar to deoxythymidy 90.2 0.24 8.1E-06 47.5 4.6 27 18-44 7-33 (215)
391 1m7g_A Adenylylsulfate kinase; 90.0 0.24 8.1E-06 47.7 4.4 30 15-44 20-49 (211)
392 2jaq_A Deoxyguanosine kinase; 89.9 0.2 7E-06 47.5 3.9 23 22-44 2-24 (205)
393 2qag_B Septin-6, protein NEDD5 89.9 0.17 5.8E-06 54.4 3.6 33 11-43 31-65 (427)
394 1svm_A Large T antigen; AAA+ f 89.9 0.22 7.5E-06 52.8 4.4 28 16-43 165-192 (377)
395 1zak_A Adenylate kinase; ATP:A 89.9 0.19 6.4E-06 48.8 3.6 26 19-44 4-29 (222)
396 2rcn_A Probable GTPase ENGC; Y 89.8 0.23 7.7E-06 52.2 4.4 29 17-45 212-240 (358)
397 3fb4_A Adenylate kinase; psych 89.7 0.21 7E-06 48.2 3.7 23 22-44 2-24 (216)
398 1xjc_A MOBB protein homolog; s 89.6 0.28 9.4E-06 45.7 4.4 25 21-45 5-29 (169)
399 1nks_A Adenylate kinase; therm 89.6 0.2 6.8E-06 47.0 3.5 24 22-45 3-26 (194)
400 3dl0_A Adenylate kinase; phosp 89.6 0.22 7.7E-06 47.9 3.9 23 22-44 2-24 (216)
401 1lw7_A Transcriptional regulat 89.5 0.18 6.2E-06 53.2 3.4 31 16-46 164-196 (365)
402 1np6_A Molybdopterin-guanine d 89.5 0.24 8.1E-06 46.4 3.8 25 20-44 6-30 (174)
403 1odf_A YGR205W, hypothetical 3 89.4 0.28 9.4E-06 50.0 4.6 25 20-44 31-55 (290)
404 3d3q_A TRNA delta(2)-isopenten 89.4 0.22 7.4E-06 51.8 3.8 24 21-44 8-31 (340)
405 3crm_A TRNA delta(2)-isopenten 89.4 0.22 7.6E-06 51.4 3.8 24 21-44 6-29 (323)
406 1u0l_A Probable GTPase ENGC; p 89.4 0.23 7.9E-06 50.9 4.0 29 17-45 166-194 (301)
407 2wwf_A Thymidilate kinase, put 89.3 0.23 7.9E-06 47.5 3.8 27 18-44 8-34 (212)
408 2cdn_A Adenylate kinase; phosp 89.3 0.26 9E-06 46.9 4.1 25 20-44 20-44 (201)
409 4edh_A DTMP kinase, thymidylat 89.2 0.42 1.4E-05 46.2 5.6 40 19-58 5-44 (213)
410 1gtv_A TMK, thymidylate kinase 89.2 0.1 3.5E-06 50.1 1.1 23 22-44 2-24 (214)
411 1ukz_A Uridylate kinase; trans 89.0 0.26 8.8E-06 46.9 3.8 25 20-44 15-39 (203)
412 3cmw_A Protein RECA, recombina 89.0 1 3.5E-05 56.4 9.9 37 17-54 729-765 (1706)
413 4tmk_A Protein (thymidylate ki 88.9 0.47 1.6E-05 45.9 5.6 41 19-59 2-43 (213)
414 2vli_A Antibiotic resistance p 88.9 0.2 7E-06 46.7 3.0 26 19-44 4-29 (183)
415 1jjv_A Dephospho-COA kinase; P 88.9 0.23 7.8E-06 47.5 3.4 21 22-42 4-24 (206)
416 2z0h_A DTMP kinase, thymidylat 88.8 0.43 1.5E-05 44.9 5.2 23 22-44 2-24 (197)
417 1lv7_A FTSH; alpha/beta domain 88.8 0.36 1.2E-05 47.9 4.9 25 20-44 45-69 (257)
418 2r44_A Uncharacterized protein 88.8 0.27 9.2E-06 50.9 4.1 36 9-44 35-70 (331)
419 1ofh_A ATP-dependent HSL prote 88.8 0.36 1.2E-05 49.1 5.0 25 20-44 50-74 (310)
420 3qf7_A RAD50; ABC-ATPase, ATPa 88.7 0.21 7.3E-06 52.7 3.3 22 22-43 25-46 (365)
421 1via_A Shikimate kinase; struc 88.7 0.25 8.6E-06 45.8 3.5 23 22-44 6-28 (175)
422 1tue_A Replication protein E1; 88.7 0.31 1E-05 46.8 4.0 25 19-43 57-81 (212)
423 1qf9_A UMP/CMP kinase, protein 88.7 0.27 9.2E-06 46.1 3.7 24 21-44 7-30 (194)
424 2if2_A Dephospho-COA kinase; a 88.7 0.26 8.7E-06 47.0 3.5 21 22-42 3-23 (204)
425 3be4_A Adenylate kinase; malar 88.6 0.32 1.1E-05 47.0 4.2 26 19-44 4-29 (217)
426 2iyv_A Shikimate kinase, SK; t 88.5 0.28 9.5E-06 45.9 3.6 25 21-45 3-27 (184)
427 1ny5_A Transcriptional regulat 88.5 1.9 6.4E-05 45.8 10.5 29 15-43 155-183 (387)
428 1e6c_A Shikimate kinase; phosp 88.4 0.27 9.3E-06 45.3 3.5 24 21-44 3-26 (173)
429 1ixz_A ATP-dependent metallopr 88.3 0.27 9.3E-06 48.7 3.6 24 21-44 50-73 (254)
430 3eph_A TRNA isopentenyltransfe 88.2 0.26 8.9E-06 52.4 3.5 24 21-44 3-26 (409)
431 1u94_A RECA protein, recombina 88.2 0.34 1.2E-05 50.9 4.3 38 16-54 59-96 (356)
432 1pui_A ENGB, probable GTP-bind 88.2 0.2 7E-06 47.7 2.5 25 17-41 23-47 (210)
433 1ak2_A Adenylate kinase isoenz 88.1 0.34 1.2E-05 47.4 4.1 26 19-44 15-40 (233)
434 2i1q_A DNA repair and recombin 88.1 0.41 1.4E-05 49.4 4.9 29 16-44 94-122 (322)
435 1e4v_A Adenylate kinase; trans 88.1 0.31 1.1E-05 47.0 3.7 23 22-44 2-24 (214)
436 2x8a_A Nuclear valosin-contain 88.1 0.29 1E-05 49.4 3.6 25 21-45 45-69 (274)
437 3cr8_A Sulfate adenylyltranfer 88.0 0.24 8.2E-06 55.3 3.2 37 16-52 365-401 (552)
438 1e9r_A Conjugal transfer prote 88.0 0.26 9.1E-06 53.2 3.5 43 19-62 52-94 (437)
439 3qks_A DNA double-strand break 87.9 0.29 1E-05 46.9 3.4 25 20-44 23-47 (203)
440 3cmw_A Protein RECA, recombina 87.9 0.94 3.2E-05 56.7 8.6 38 16-54 30-67 (1706)
441 2xb4_A Adenylate kinase; ATP-b 87.8 0.33 1.1E-05 47.2 3.7 23 22-44 2-24 (223)
442 3hws_A ATP-dependent CLP prote 87.7 0.48 1.7E-05 49.7 5.3 26 19-44 50-75 (363)
443 2pt5_A Shikimate kinase, SK; a 87.7 0.37 1.3E-05 44.1 3.9 23 22-44 2-24 (168)
444 2p67_A LAO/AO transport system 87.7 0.41 1.4E-05 50.0 4.6 29 17-45 53-81 (341)
445 2pbr_A DTMP kinase, thymidylat 87.6 0.31 1.1E-05 45.7 3.4 23 22-44 2-24 (195)
446 2p5t_B PEZT; postsegregational 87.5 0.25 8.4E-06 49.2 2.7 25 20-44 32-56 (253)
447 3io5_A Recombination and repai 87.5 0.2 6.9E-06 51.4 2.0 40 17-57 26-66 (333)
448 1t9h_A YLOQ, probable GTPase E 87.5 0.11 3.6E-06 53.6 -0.1 28 16-43 169-196 (307)
449 3a4m_A L-seryl-tRNA(SEC) kinas 87.3 0.31 1.1E-05 48.7 3.3 25 19-43 3-27 (260)
450 2www_A Methylmalonic aciduria 87.3 0.39 1.3E-05 50.4 4.1 27 20-46 74-100 (349)
451 3lv8_A DTMP kinase, thymidylat 87.1 0.69 2.4E-05 45.5 5.6 28 18-45 25-52 (236)
452 1vht_A Dephospho-COA kinase; s 87.0 0.33 1.1E-05 46.9 3.1 23 20-42 4-26 (218)
453 3v9p_A DTMP kinase, thymidylat 86.9 0.46 1.6E-05 46.5 4.1 28 17-44 22-49 (227)
454 1iy2_A ATP-dependent metallopr 86.8 0.36 1.2E-05 48.6 3.5 23 22-44 75-97 (278)
455 2ius_A DNA translocase FTSK; n 86.8 0.49 1.7E-05 52.0 4.7 25 18-42 165-189 (512)
456 3tmk_A Thymidylate kinase; pho 86.7 0.68 2.3E-05 44.9 5.2 37 18-57 3-39 (216)
457 1oix_A RAS-related protein RAB 86.7 0.4 1.4E-05 45.1 3.5 23 22-44 31-53 (191)
458 1uf9_A TT1252 protein; P-loop, 86.6 0.37 1.3E-05 45.6 3.3 24 20-43 8-31 (203)
459 3cf2_A TER ATPase, transitiona 86.5 0.98 3.4E-05 52.5 7.3 24 21-44 512-535 (806)
460 2f9l_A RAB11B, member RAS onco 86.3 0.39 1.3E-05 45.4 3.3 23 22-44 7-29 (199)
461 4hlc_A DTMP kinase, thymidylat 86.3 0.97 3.3E-05 43.3 6.1 38 20-59 2-40 (205)
462 1qhl_A Protein (cell division 86.0 0.16 5.4E-06 49.8 0.3 28 22-49 29-56 (227)
463 1w1w_A Structural maintenance 85.9 0.5 1.7E-05 51.0 4.2 28 18-45 24-51 (430)
464 3auy_A DNA double-strand break 85.8 0.4 1.4E-05 50.6 3.4 23 20-42 25-47 (371)
465 3hjn_A DTMP kinase, thymidylat 85.7 0.83 2.9E-05 43.5 5.2 40 22-61 2-41 (197)
466 2vhj_A Ntpase P4, P4; non- hyd 85.5 0.43 1.5E-05 49.1 3.2 27 17-43 120-146 (331)
467 1c9k_A COBU, adenosylcobinamid 85.3 0.4 1.4E-05 45.0 2.7 21 23-43 2-22 (180)
468 1q3t_A Cytidylate kinase; nucl 85.2 0.6 2.1E-05 45.7 4.1 28 17-44 13-40 (236)
469 3r20_A Cytidylate kinase; stru 85.2 0.61 2.1E-05 45.7 4.0 26 19-44 8-33 (233)
470 1gm5_A RECG; helicase, replica 84.6 0.82 2.8E-05 53.1 5.5 78 213-296 417-495 (780)
471 2o5v_A DNA replication and rep 84.6 0.49 1.7E-05 49.7 3.3 44 253-300 301-344 (359)
472 2ged_A SR-beta, signal recogni 84.1 1.2 4.2E-05 41.4 5.6 23 21-43 49-71 (193)
473 2wji_A Ferrous iron transport 84.0 0.63 2.1E-05 42.4 3.4 22 22-43 5-26 (165)
474 2grj_A Dephospho-COA kinase; T 83.8 0.69 2.4E-05 43.9 3.6 24 20-43 12-35 (192)
475 2dyk_A GTP-binding protein; GT 83.7 0.7 2.4E-05 41.4 3.6 22 22-43 3-24 (161)
476 2gj8_A MNME, tRNA modification 83.7 0.6 2E-05 43.1 3.1 25 19-43 3-27 (172)
477 1ltq_A Polynucleotide kinase; 83.7 0.6 2.1E-05 47.4 3.4 23 21-43 3-25 (301)
478 2ce2_X GTPase HRAS; signaling 83.6 0.7 2.4E-05 41.5 3.5 22 22-43 5-26 (166)
479 2ga8_A Hypothetical 39.9 kDa p 83.5 1.1 3.6E-05 46.8 5.2 37 7-43 5-47 (359)
480 3hgt_A HDA1 complex subunit 3; 83.4 5.4 0.00018 40.9 10.3 120 201-351 114-241 (328)
481 3m6a_A ATP-dependent protease 83.3 0.69 2.4E-05 51.5 3.9 26 19-44 107-132 (543)
482 1z2a_A RAS-related protein RAB 83.2 0.7 2.4E-05 41.7 3.4 22 22-43 7-28 (168)
483 3ake_A Cytidylate kinase; CMP 83.1 0.74 2.5E-05 43.7 3.6 23 22-44 4-26 (208)
484 1uj2_A Uridine-cytidine kinase 83.0 0.77 2.6E-05 45.4 3.8 25 21-45 23-47 (252)
485 2ocp_A DGK, deoxyguanosine kin 82.9 0.74 2.5E-05 45.2 3.6 25 20-44 2-26 (241)
486 3pxg_A Negative regulator of g 82.8 1.1 3.8E-05 48.8 5.3 32 12-43 191-224 (468)
487 2c9o_A RUVB-like 1; hexameric 82.7 0.94 3.2E-05 49.2 4.7 25 20-44 63-87 (456)
488 1kao_A RAP2A; GTP-binding prot 82.6 0.83 2.8E-05 41.0 3.6 22 22-43 5-26 (167)
489 1z0j_A RAB-22, RAS-related pro 82.5 0.83 2.9E-05 41.3 3.6 23 22-44 8-30 (170)
490 1ek0_A Protein (GTP-binding pr 82.4 0.83 2.8E-05 41.3 3.5 23 22-44 5-27 (170)
491 1ky3_A GTP-binding protein YPT 82.4 0.84 2.9E-05 41.8 3.6 22 22-43 10-31 (182)
492 1g16_A RAS-related protein SEC 82.3 0.77 2.6E-05 41.5 3.3 22 22-43 5-26 (170)
493 3zvl_A Bifunctional polynucleo 82.3 0.76 2.6E-05 49.3 3.7 26 19-44 257-282 (416)
494 2wjg_A FEOB, ferrous iron tran 82.3 0.78 2.7E-05 42.5 3.4 21 22-42 9-29 (188)
495 2zej_A Dardarin, leucine-rich 82.1 0.64 2.2E-05 43.3 2.7 21 22-42 4-24 (184)
496 1u8z_A RAS-related protein RAL 81.9 0.84 2.9E-05 41.1 3.4 22 22-43 6-27 (168)
497 2wsm_A Hydrogenase expression/ 81.9 1.4 4.7E-05 42.2 5.0 27 19-45 29-55 (221)
498 1um8_A ATP-dependent CLP prote 81.9 0.82 2.8E-05 48.2 3.7 25 20-44 72-96 (376)
499 2erx_A GTP-binding protein DI- 81.8 0.81 2.8E-05 41.4 3.2 21 22-42 5-25 (172)
500 2f6r_A COA synthase, bifunctio 81.7 0.76 2.6E-05 46.4 3.2 21 21-41 76-96 (281)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=8.9e-108 Score=959.11 Aligned_cols=626 Identities=43% Similarity=0.736 Sum_probs=571.9
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCC--CcEEEEcchhhHHHHHHHHHHHHHhCCccCce
Q 005291 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTK--SGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (704)
Q Consensus 3 ~LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~--~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~ 80 (704)
.||++.++++|...+..+++++|+|||||||||++|+++....... +.++++++|+|+++.+++++++++++..++..
T Consensus 92 ~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~ 171 (773)
T 2xau_A 92 ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEE 171 (773)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTT
T ss_pred cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhhe
Confidence 6899999999999999999999999999999999999987655433 55799999999999999999999999999999
Q ss_pred eeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 81 vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+||.++++......++|+++|+|++++.+..++.+.++++|||||+|+|+++.+.+..+++.+...++ +.++|+||||+
T Consensus 172 vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~ 250 (773)
T 2xau_A 172 VGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATL 250 (773)
T ss_dssp EEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCS
T ss_pred ecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccc
Confidence 99999998888888999999999999999999999999999999999999999999999999988876 89999999999
Q ss_pred ChHHHhcccCCCCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhc
Q 005291 161 DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (704)
Q Consensus 161 ~~~~~~~~~~~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~ 240 (704)
+.+.+.+||++++++.++++.+|++++|......++....+..+..++.....|++||||+++++++.+++.|.+....+
T Consensus 251 ~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l 330 (773)
T 2xau_A 251 DAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQL 330 (773)
T ss_dssp CCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999888888998888889888887788999999999999999999998643221
Q ss_pred C-CCCCCCeEEEeccCCCCHHHHhhccCCCC-----CCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccc
Q 005291 241 D-EGSCMDAVILPLHGSLPPEMQVRVFSPPP-----PNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYS 314 (704)
Q Consensus 241 ~-~~~~~~~~v~~lh~~l~~~~r~~v~~~~~-----~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~ 314 (704)
. .....++.+.++||+|+.++|.++++.|+ +|.++||||||++|+|||||+|++|||+|++|++.||+.+|+..
T Consensus 331 ~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~ 410 (773)
T 2xau_A 331 VREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVES 410 (773)
T ss_dssp HHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEE
T ss_pred cccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccc
Confidence 0 00114788999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred cccccccHHhHHhhccccCCCCCceEEEecCCccccccCCCCCCCccccCChHHHHHhhcccCccccccccccCCCCCCH
Q 005291 315 LDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSS 394 (704)
Q Consensus 315 l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~l~~~~~~~~~~~~~~~P~~ 394 (704)
|.+.|+|.++|.||+|||||.++|+||+||+++++...+.+++.|||++++|.+++|+++.+|+.+ +..|+|+|||+.
T Consensus 411 L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~--~~~f~~~~~p~~ 488 (773)
T 2xau_A 411 LLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDD--LVHFDFMDPPAP 488 (773)
T ss_dssp EEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCC--GGGCCCSSCCCH
T ss_pred cccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCccccCcHHHHHHHHHHcCCCC--hhhccccCCCcH
Confidence 999999999999999999999999999999999995559999999999999999999999999988 889999999999
Q ss_pred HHHHHHHHHHHHcccccCCCCCCHHHHHHhcCCCChHhHHHHHHhhhcCCHHHHHHHHHHhccCCcccCCCCchHHHHhh
Q 005291 395 ESLEDALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTLLPGRSKSTEKKRK 474 (704)
Q Consensus 395 ~~l~~al~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~ 474 (704)
+++..|++.|+.+||||++|++|++|+.|+.||++|++||||+.|..++|++++++||||||++++|+.|.+.+++++.+
T Consensus 489 ~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~ 568 (773)
T 2xau_A 489 ETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDA 568 (773)
T ss_dssp HHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcccCCcccCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHhhhcC---Cc-hHHHHHccccccccccHHHHHHHHHHHHHHhcCCCcccccccccc
Q 005291 475 HTPLELPDGSGWGDHIQLLQIYECWDECD---YD-VNWVKDNGLQVRGMMFVKDIRKQLCQIMQKIAKGSLDVRANHIWK 550 (704)
Q Consensus 475 ~~~~~~~~~~~~~D~~~~l~~~~~~~~~~---~~-~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~~~~~~~~~~ 550 (704)
+..|. ++.|||++++|+|++|.+.. .. ..||++|||++++|+++.++|+||.++|.+.+...... ..
T Consensus 569 ~~~f~----~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~----~~- 639 (773)
T 2xau_A 569 KNIFA----HPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTT----DY- 639 (773)
T ss_dssp HHTTC----CTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCC----CT-
T ss_pred HHhcc----CCCCcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCCC----CC-
Confidence 99998 78899999999999997643 34 78999999999999999999999999998876432210 00
Q ss_pred cchhhHHHHHHHHHhhcchhhhhhhcCCCceeEecccCCeEEECCCCCCCCcCCCCCCCEEEEEeecccccchhhhcccc
Q 005291 551 ESRQDYRKLRKALCVGYANQLAERMIHHNGYRTLGFKPQLVQVHPSSELKTDEEGLLPNYVVYHELIATSRPYMRNVCAV 630 (704)
Q Consensus 551 ~~~~~~~~i~~~l~~g~~~~va~~~~~~~~y~~~~~~~~~~~ihpsS~l~~~~~~~~~~~ivy~e~~~t~~~~~r~~~~i 630 (704)
.+..+++.|++|||+|||+|||++.+..+.|+++ .+++.|+|||+|+|.. .|+||||+|++.|++.|||+||+|
T Consensus 640 ~~~~~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~-~~~~~~~ihp~s~l~~-----~~~~~v~~e~~~t~~~~~~~~~~i 713 (773)
T 2xau_A 640 ESPKYFDNIRKALASGFFMQVAKKRSGAKGYITV-KDNQDVLIHPSTVLGH-----DAEWVIYNEFVLTSKNYIRTVTSV 713 (773)
T ss_dssp TSTTHHHHHHHHHHHHHTTSEEEECCC--CEEET-TTCCEEEECTTCCCCT-----TCSEEEEEEEEESSSEEEEEEEEC
T ss_pred CchhhHHHHHHHHHHhChHhheeeccCCCcceEe-eCCCEEEECCCcccCC-----CCCEEEEEEeeccchhheeecccC
Confidence 1223567899999999999999988652249998 6799999999999952 389999999999999999999999
Q ss_pred CHhhHHHHhccccccc
Q 005291 631 EMQWVMPILKKLEKID 646 (704)
Q Consensus 631 ~~~wl~~~~~~~~~~~ 646 (704)
+|+||.+++|++++..
T Consensus 714 ~~~~l~~~~~~~~~~~ 729 (773)
T 2xau_A 714 RPEWLIEIAPAYYDLS 729 (773)
T ss_dssp CHHHHHHHCTTTSCGG
T ss_pred CHHHHHHHHHHheeec
Confidence 9999999999998653
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.5e-56 Score=522.23 Aligned_cols=515 Identities=15% Similarity=0.132 Sum_probs=375.0
Q ss_pred CchHHHHHHHHH-hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHH--HHhCCccCcee
Q 005291 5 PILQYEETIVET-VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVA--QELGVRLGEEV 81 (704)
Q Consensus 5 Pi~~~~~~il~~-l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva--~~~~~~vg~~v 81 (704)
..+++|.++++. +.++++++++||||||||+++++++.......++++++++|+++++.|+++++. ..+|..++..+
T Consensus 30 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~ 109 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTS 109 (715)
T ss_dssp BCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECC
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 468899999999 889999999999999999998887775433346799999999999999999983 34567777777
Q ss_pred eeeeecccccCcccceEEcchHHHHHHHHhCCC-CCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPD-LSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 82 g~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~-l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
|+..+.+... ..++|+|+|+|++.+.+..++. ++++++|||||+|+.. +. .....++.++...+ +.++|+||||+
T Consensus 110 G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~-~~-~~~~~l~~i~~~~~-~~~ii~lSATl 185 (715)
T 2va8_A 110 GDYDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN-DP-ERGPVVESVTIRAK-RRNLLALSATI 185 (715)
T ss_dssp SCSSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG-CT-TTHHHHHHHHHHHH-TSEEEEEESCC
T ss_pred CCCCCchhhc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC-Cc-ccchHHHHHHHhcc-cCcEEEEcCCC
Confidence 7666555433 4789999999999999988775 8999999999999633 22 23344555665555 89999999999
Q ss_pred C-hHHHhcccCCCCccccCCCcCceeEEecCCC--------------Ccch--HHHHHHHHHHHHccCCCCCEEEEeCCH
Q 005291 161 D-GEKVSKFFSNCPTLNVPGKLYPVEILHSKER--------------PTSY--LESALKTAIDIHVREPEGDVLIFMTGQ 223 (704)
Q Consensus 161 ~-~~~~~~~~~~~~~i~i~~~~~pv~~~~~~~~--------------~~~~--~~~~~~~~~~i~~~~~~g~iLVFl~~~ 223 (704)
+ .+.+.+||+ ++.+..+++.+|+...+.... ...+ .......+.+.+ ..++++||||+++
T Consensus 186 ~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~ 262 (715)
T 2va8_A 186 SNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSL--SKNGQVLVFRNSR 262 (715)
T ss_dssp TTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHH--TTTCCEEEECSSH
T ss_pred CCHHHHHHHhC-CCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHH--hcCCCEEEEECCH
Confidence 5 788999995 667788888888875442111 0000 123334444443 3568999999999
Q ss_pred HHHHHHHHHHHHHhhh--cCC--------------C----------CCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEE
Q 005291 224 DDIEKLVSKLEDKIRS--LDE--------------G----------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFI 277 (704)
Q Consensus 224 ~~i~~~~~~L~~~~~~--~~~--------------~----------~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIl 277 (704)
++++.+++.|.+.... +.. . ......+.++||+|+.++|..+++.|++|.++||
T Consensus 263 ~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vl 342 (715)
T 2va8_A 263 KMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVI 342 (715)
T ss_dssp HHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEE
T ss_pred HHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEE
Confidence 9999999999875321 000 0 0001358899999999999999999999999999
Q ss_pred EEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCC---CceEEEecCCccc-cccC
Q 005291 278 VSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVY-HDEF 353 (704)
Q Consensus 278 vaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~---~G~c~~L~~~~~~-~~~~ 353 (704)
|||+++++|||+|++++||++ ...||++.+.. ..|+|.+++.||+|||||.+ +|.||++|++.+. ...+
T Consensus 343 vaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~ 415 (715)
T 2va8_A 343 VATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVF 415 (715)
T ss_dssp EECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHH
T ss_pred EEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHH
Confidence 999999999999999999986 45788766553 57999999999999999987 8999999988762 2211
Q ss_pred --CCCCCCccccCChHH------HHHhhcccCcc-c-ccccc---ccCCC-CCCHHHHHHHHHHHHHcccccCCC---CC
Q 005291 354 --LDVTVPEIQRSSLAG------SVLYLKSLDLS-D-INVLK---FDFLD-PPSSESLEDALKQLYLIDAIDENG---SI 416 (704)
Q Consensus 354 --~~~~~pei~r~~l~~------~~L~l~~l~~~-~-~~~~~---~~~~~-~P~~~~l~~al~~L~~lgald~~~---~l 416 (704)
.....||+.++++.. .+|.+..+|.- + .++.. ..|+. +|+...+..|++.|..+|+|+.++ .+
T Consensus 416 ~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~ 495 (715)
T 2va8_A 416 KKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFAL 495 (715)
T ss_dssp HHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEE
T ss_pred HHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecCCeEee
Confidence 124678999988765 67777777732 1 01222 24553 455667999999999999998774 89
Q ss_pred CHHHHHHhcCCCChHhHHHHHHhhhc---CCHHHHHHHHHHhcc-CCcccCCCCchHHHHhhc---CC-CCCCCCCCCC-
Q 005291 417 TSIGRTMAELPLEPSLSRMLMEANEF---GCLSQALTVAAMLSA-ETTLLPGRSKSTEKKRKH---TP-LELPDGSGWG- 487 (704)
Q Consensus 417 T~lG~~~~~lpl~p~~~~~ll~~~~~---~c~~~~l~i~a~ls~-~~~f~~~~~~~~~~~~~~---~~-~~~~~~~~~~- 487 (704)
|++|+.|+.+|++|++|++++.+... .|..+++.|+|+.+. .++|+++.+...-.+... .. +.. .+..
T Consensus 496 t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~---~~~~~ 572 (715)
T 2va8_A 496 TNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIE---EPYEE 572 (715)
T ss_dssp CHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSC---CCSSH
T ss_pred ChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCcccccCccChHHHHHHHHHHHhcchhhccc---ccccc
Confidence 99999999999999999999999988 899999999888774 678877654333222211 11 110 1111
Q ss_pred -------CHHHHHHHHHHhhhcCCchHHHHHccccccccccHHHHHHHHHHHHHHh
Q 005291 488 -------DHIQLLQIYECWDECDYDVNWVKDNGLQVRGMMFVKDIRKQLCQIMQKI 536 (704)
Q Consensus 488 -------D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~ 536 (704)
.|+-..-+.++|.+......+|.++++....++.+.+....|...+..+
T Consensus 573 ~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i 628 (715)
T 2va8_A 573 DEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHL 628 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHH
Confidence 2445566678898766677899999997777777766666666655544
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=4.9e-54 Score=504.22 Aligned_cols=510 Identities=16% Similarity=0.133 Sum_probs=374.6
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHH--HhCCccCceee
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ--ELGVRLGEEVG 82 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~--~~~~~vg~~vg 82 (704)
..+++|.++++.+.++++++++||||||||+++++.+..... .++++++++|+++++.|+++++.. .+|..++..+|
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~-~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G 103 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTG 103 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECS
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH-hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 357889999999999999999999999999888777665432 367899999999999999999832 34566777777
Q ss_pred eeeecccccCcccceEEcchHHHHHHHHhCCC-CCCCceEEEeCCCcCCC--CHHHHHHHHHHHHHHhccCcEEEEEecC
Q 005291 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPD-LSPYSVIILDEAHERSL--NTDILLGLVKRLVNLRASKLKILITSAT 159 (704)
Q Consensus 83 ~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~-l~~~~~IIiDEaHer~l--~~d~l~~llk~l~~~~~~~~kiI~~SAT 159 (704)
+..+.+... ..++|+|+|+|++.+.+..++. ++++++||+||+|+..- ....+..++..+....+ +.++|+||||
T Consensus 104 ~~~~~~~~~-~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~-~~~ii~lSAT 181 (702)
T 2p6r_A 104 DYESRDEHL-GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK-ALRVIGLSAT 181 (702)
T ss_dssp SCBCCSSCS-TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCT-TCEEEEEECC
T ss_pred CCCcchhhc-cCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCc-CceEEEECCC
Confidence 665555433 4789999999999999887765 89999999999996221 22234444444444444 8999999999
Q ss_pred CC-hHHHhcccCCCCccccCCCcCceeEEecCCCCcchHHH---------HHHHHHHHHccCCCCCEEEEeCCHHHHHHH
Q 005291 160 LD-GEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLES---------ALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (704)
Q Consensus 160 l~-~~~~~~~~~~~~~i~i~~~~~pv~~~~~~~~~~~~~~~---------~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~ 229 (704)
++ .+.+.+|++ ++.+..+++.+|+...+.......+... ....+.+.. .+++++||||+++++++.+
T Consensus 182 l~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~ 258 (702)
T 2p6r_A 182 APNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECV--AENGGVLVFESTRRGAEKT 258 (702)
T ss_dssp CTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHH--HTTCCEEEECSSHHHHHHH
T ss_pred cCCHHHHHHHhC-CCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHH--hcCCCEEEEcCCHHHHHHH
Confidence 96 788999996 6778888999998876543221111100 223333333 2578999999999999999
Q ss_pred HHHHHHHhhhcCCCC--------------------CCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccC
Q 005291 230 VSKLEDKIRSLDEGS--------------------CMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV 289 (704)
Q Consensus 230 ~~~L~~~~~~~~~~~--------------------~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidi 289 (704)
++.|.+......... ..+..+.++||+|++++|..+++.|++|.++|||||+++++|||+
T Consensus 259 a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidi 338 (702)
T 2p6r_A 259 AVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNL 338 (702)
T ss_dssp HHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCC
T ss_pred HHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCC
Confidence 999987532210000 001357889999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCC---CceEEEecCCccccccCC--CCCCCccccC
Q 005291 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHDEFL--DVTVPEIQRS 364 (704)
Q Consensus 290 p~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~---~G~c~~L~~~~~~~~~~~--~~~~pei~r~ 364 (704)
|++++||++ ...|| |. ..|.|.+++.||+|||||.+ +|.||+++++.+++..+. ....||+.++
T Consensus 339 p~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s 407 (702)
T 2p6r_A 339 PARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITS 407 (702)
T ss_dssp CBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCC
T ss_pred CceEEEEcC----ceeeC---CC----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcee
Confidence 999999985 45676 22 46899999999999999986 899999999887654111 2567999998
Q ss_pred ChHH------HHHhhcccCcc-c-ccccc---ccCC----CCCCHHHHHHHHHHHHHcccccCC--CCCCHHHHHHhcCC
Q 005291 365 SLAG------SVLYLKSLDLS-D-INVLK---FDFL----DPPSSESLEDALKQLYLIDAIDEN--GSITSIGRTMAELP 427 (704)
Q Consensus 365 ~l~~------~~L~l~~l~~~-~-~~~~~---~~~~----~~P~~~~l~~al~~L~~lgald~~--~~lT~lG~~~~~lp 427 (704)
+|.. .+|.+..+|.. + .++.. ..|+ ++|..+.+..|++.|..+|+|+.+ +.+|++|+.|+.+|
T Consensus 408 ~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~ 487 (702)
T 2p6r_A 408 KLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLY 487 (702)
T ss_dssp CCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTT
T ss_pred ecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHh
Confidence 8765 56666676632 1 00221 1333 378889999999999999999977 78999999999999
Q ss_pred CChHhHHHHHHhhhc--CCHHHHHHHHHHhcc-CCcccCCCCchHHHHhh---cCCCCCCCCCCCC-------CHHHHHH
Q 005291 428 LEPSLSRMLMEANEF--GCLSQALTVAAMLSA-ETTLLPGRSKSTEKKRK---HTPLELPDGSGWG-------DHIQLLQ 494 (704)
Q Consensus 428 l~p~~~~~ll~~~~~--~c~~~~l~i~a~ls~-~~~f~~~~~~~~~~~~~---~~~~~~~~~~~~~-------D~~~~l~ 494 (704)
++|+.+++++.+... .|..+++.|+|+.+. .++++++.+ ..-.+.. ...+.... .-.. .|+-..-
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~ 565 (702)
T 2p6r_A 488 IDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYP-SDFSVEYDWFLSEVKTAL 565 (702)
T ss_dssp CCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCC-CTTSTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCch-HHHHHHHHhccccccCCc-chhhhhhhhhhhhHHHHH
Confidence 999999999999998 899999999998876 578887766 2211111 11121000 0011 3555666
Q ss_pred HHHHhhhcCCchHHHHHccccccccccHHHHHHHHHHHH
Q 005291 495 IYECWDECDYDVNWVKDNGLQVRGMMFVKDIRKQLCQIM 533 (704)
Q Consensus 495 ~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l 533 (704)
+.++|.........|.++++....++.+.+-...|.+.+
T Consensus 566 lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~ 604 (702)
T 2p6r_A 566 CLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAM 604 (702)
T ss_dssp HHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHH
Confidence 778898766667788888876555555444444444433
No 4
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-54 Score=442.90 Aligned_cols=244 Identities=33% Similarity=0.624 Sum_probs=219.4
Q ss_pred cccccC-CCCCCHHHHHHHHHHHHHcccccCCCCCCHHHHHHhcCCCChHhHHHHHHhhhcCCHHHHHHHHHHhccCCcc
Q 005291 383 VLKFDF-LDPPSSESLEDALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRMLMEANEFGCLSQALTVAAMLSAETTL 461 (704)
Q Consensus 383 ~~~~~~-~~~P~~~~l~~al~~L~~lgald~~~~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~~~~l~i~a~ls~~~~f 461 (704)
+..|+| +|||+.+++..|++.|+.+||||++|+||++|+.|++||+||++||||+.|..++|.+++++|||+||++++|
T Consensus 5 ~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~f 84 (270)
T 3i4u_A 5 GPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVF 84 (270)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCCB
T ss_pred hhccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCccc
Confidence 467899 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHhhhcCCchHHHHHccccccccccHHHHHHHHHHHHHHhcCCCc
Q 005291 462 LPGRSKSTEKKRKHTPLELPDGSGWGDHIQLLQIYECWDECDYDVNWVKDNGLQVRGMMFVKDIRKQLCQIMQKIAKGSL 541 (704)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~ 541 (704)
+.|.+++++++.+|..|. ++.|||++++|+|++|.+++.+..||++||||+++|+++.++|+||.+++++.+....
T Consensus 85 ~~p~~~~~~a~~~~~~f~----~~~sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~ 160 (270)
T 3i4u_A 85 YRPKDKQALADQKKAKFH----QTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVV 160 (270)
T ss_dssp CCCGGGHHHHHHHHHTTC----BTTBHHHHHHHHHHHHHHTTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cCCchhHHHHHHHHHHcc----CCCChHHHHHHHHHHHHHcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 999999999999999998 7899999999999999988888899999999999999999999999999988764321
Q ss_pred ccccccccccchhhHHHHHHHHHhhcchhhhhhhcCCCceeEecccCCeEEECCCCCCCCcCCCCCCCEEEEEeeccccc
Q 005291 542 DVRANHIWKESRQDYRKLRKALCVGYANQLAERMIHHNGYRTLGFKPQLVQVHPSSELKTDEEGLLPNYVVYHELIATSR 621 (704)
Q Consensus 542 ~~~~~~~~~~~~~~~~~i~~~l~~g~~~~va~~~~~~~~y~~~~~~~~~~~ihpsS~l~~~~~~~~~~~ivy~e~~~t~~ 621 (704)
++..+++.|++|||+|||+|||++.+. ++|+++ .+++.|+|||||+|+. .+|+||||+|++.|+|
T Consensus 161 ---------s~~~~~~~i~~~L~aG~~~nvA~~~~~-~~Y~~~-~~~~~v~iHPsS~L~~----~~p~wvvy~Elv~Tsk 225 (270)
T 3i4u_A 161 ---------SCGKSTVRVQKAICSGFFRNAAKKDPQ-EGYRTL-IDQQVVYIHPSSALFN----RQPEWVVYHELVLTTK 225 (270)
T ss_dssp ---------CCTTCTHHHHHHHHHHHGGGEEEECSS-SSEEET-TTCCEEEECTTSTTTT----SCCSEEEEEEEEESSS
T ss_pred ---------CCcchHHHHHHHHHHHhHHHHheeCCC-CceEEc-cCCCEEEECchhhhcC----CCCCEEEEEehhhhhH
Confidence 223356789999999999999998864 789998 6899999999999983 5699999999999999
Q ss_pred chhhhccccCHhhHHHHhcccccc
Q 005291 622 PYMRNVCAVEMQWVMPILKKLEKI 645 (704)
Q Consensus 622 ~~~r~~~~i~~~wl~~~~~~~~~~ 645 (704)
.|||+||+|+|+||.+++|++++.
T Consensus 226 ~y~r~vt~I~p~wL~~~ap~~~~~ 249 (270)
T 3i4u_A 226 EYMREVTTIDPRWLVEFAPAFFKV 249 (270)
T ss_dssp EEEEEEEECCHHHHHHHCTTTEEC
T ss_pred hHHHhccccCHHHHHHHhHHHhcc
Confidence 999999999999999999999765
No 5
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.8e-51 Score=483.76 Aligned_cols=508 Identities=15% Similarity=0.134 Sum_probs=354.9
Q ss_pred CchHHHHHHHHH-hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHH--HHhCCccCcee
Q 005291 5 PILQYEETIVET-VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVA--QELGVRLGEEV 81 (704)
Q Consensus 5 Pi~~~~~~il~~-l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva--~~~~~~vg~~v 81 (704)
..+++|.++++. +.++++++++||||||||+++...+.......++++++++|+++++.|+++++. ..+|..++..+
T Consensus 23 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~ 102 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMAT 102 (720)
T ss_dssp BCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEEC
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEec
Confidence 568999999998 899999999999999999877666654333236799999999999999999985 23456666555
Q ss_pred eeeeecccccCcccceEEcchHHHHHHHHhCCC-CCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPD-LSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 82 g~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~-l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
| ....+......++|+|+|++++.+.+..++. ++++++|||||+|. ..+.+.. ..+..++...+.+.++|+||||+
T Consensus 103 G-~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~-l~~~~r~-~~~~~ll~~l~~~~~ii~lSATl 179 (720)
T 2zj8_A 103 G-DYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHL-IGSRDRG-ATLEVILAHMLGKAQIIGLSATI 179 (720)
T ss_dssp S-CSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGG-GGCTTTH-HHHHHHHHHHBTTBEEEEEECCC
T ss_pred C-CCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcc-cCCCccc-HHHHHHHHHhhcCCeEEEEcCCc
Confidence 5 3334444445789999999999998877664 88999999999994 2221111 11223333222379999999999
Q ss_pred -ChHHHhcccCCCCccccCCCcCceeEEecCCCCcch-------HHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHH
Q 005291 161 -DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSY-------LESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (704)
Q Consensus 161 -~~~~~~~~~~~~~~i~i~~~~~pv~~~~~~~~~~~~-------~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~ 232 (704)
+.+.+.+|++ ++.+..+++.+|+...+.......+ .......+.+.+ .+++++||||+++++++.++..
T Consensus 180 ~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~ 256 (720)
T 2zj8_A 180 GNPEELAEWLN-AELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAI--RKKKGALIFVNMRRKAERVALE 256 (720)
T ss_dssp SCHHHHHHHTT-EEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHH--HTTCCEEEECSCHHHHHHHHHH
T ss_pred CCHHHHHHHhC-CcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHH--hCCCCEEEEecCHHHHHHHHHH
Confidence 5678999985 4556777788887764422111111 111122233333 2468999999999999999999
Q ss_pred HHHHhhhcCC------------C-----------CCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccC
Q 005291 233 LEDKIRSLDE------------G-----------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV 289 (704)
Q Consensus 233 L~~~~~~~~~------------~-----------~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidi 289 (704)
|.+....... . ......+.++||+|+.++|..+++.|++|.++|||||+++++|||+
T Consensus 257 L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdi 336 (720)
T 2zj8_A 257 LSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINT 336 (720)
T ss_dssp HHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCC
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCC
Confidence 9875322000 0 0001348999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCC---CceEEEecCCccccc---cCCCCCCCcccc
Q 005291 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHD---EFLDVTVPEIQR 363 (704)
Q Consensus 290 p~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~---~G~c~~L~~~~~~~~---~~~~~~~pei~r 363 (704)
|++++||+.+ ..|| ..| ..|.|.+++.||+|||||.+ +|.||.++++...+. .+....++++..
T Consensus 337 p~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s 406 (720)
T 2zj8_A 337 PAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFS 406 (720)
T ss_dssp CBSEEEECCS----EECC-SSS-----CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCC
T ss_pred CceEEEEcCC----eeec-CCC-----CccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEe
Confidence 9999999855 3455 222 25889999999999999986 799999999887432 133344444443
Q ss_pred C-----ChHHHHHhhcccCcc----c-cccccccCC------CCCCHHHHHHHHHHHHHccccc-CCC---CCCHHHHHH
Q 005291 364 S-----SLAGSVLYLKSLDLS----D-INVLKFDFL------DPPSSESLEDALKQLYLIDAID-ENG---SITSIGRTM 423 (704)
Q Consensus 364 ~-----~l~~~~L~l~~l~~~----~-~~~~~~~~~------~~P~~~~l~~al~~L~~lgald-~~~---~lT~lG~~~ 423 (704)
. .|...++.....|.. + .+...+.|+ ++|..+.+..|++.|...|+|+ .++ .+|++|+.|
T Consensus 407 ~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~ 486 (720)
T 2zj8_A 407 QLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGIRT 486 (720)
T ss_dssp CTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHH
T ss_pred ecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeECCCCcEeeChHHHHH
Confidence 3 345555666555532 1 011222343 2334578999999999999998 665 799999999
Q ss_pred hcCCCChHhHHHHHHhhhc----CCHHHHHHHHHHhcc-CCcccCCCCchHHHHhh---------cCCCCCCCCCC-C--
Q 005291 424 AELPLEPSLSRMLMEANEF----GCLSQALTVAAMLSA-ETTLLPGRSKSTEKKRK---------HTPLELPDGSG-W-- 486 (704)
Q Consensus 424 ~~lpl~p~~~~~ll~~~~~----~c~~~~l~i~a~ls~-~~~f~~~~~~~~~~~~~---------~~~~~~~~~~~-~-- 486 (704)
+.+|++|..+++++.+... +|..++++|+|++++ +++|+++.+...-.+.. ...+. .. .
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~~~~~~~~~~~~~~p~~----~~~~~~ 562 (720)
T 2zj8_A 487 AKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYI----SGYDPY 562 (720)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHHHHHHHHHHHGGGCSSCCTTS----SCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCHHHHHHHHHHHHhcccccccccccc----ccccch
Confidence 9999999999999999887 899999999999986 68888765433222211 01121 10 1
Q ss_pred --C---CHHHHHHHHHHhhhcCCchHHHHHccccccccccHHHHHHHHHHH
Q 005291 487 --G---DHIQLLQIYECWDECDYDVNWVKDNGLQVRGMMFVKDIRKQLCQI 532 (704)
Q Consensus 487 --~---D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~ 532 (704)
. .|+-..-+.++|.........|.++++....++.+.+-...|...
T Consensus 563 ~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a 613 (720)
T 2zj8_A 563 LERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYS 613 (720)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhHHHHHHHHHHHHHH
Confidence 1 244455566888765555667777777555554444433444333
No 6
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.2e-38 Score=359.57 Aligned_cols=297 Identities=22% Similarity=0.293 Sum_probs=220.6
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceee
Q 005291 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (704)
Q Consensus 3 ~LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg 82 (704)
.||++.+|++++..+.++++++++||||||||++++..+.+. +.++++++|+|++|.|+++++++.++..++..+|
T Consensus 215 ~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG 290 (666)
T 3o8b_A 215 RSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----GYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTG 290 (666)
T ss_dssp HSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----TCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECS
T ss_pred cCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----CCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 479999999999999999999999999999998888777652 4589999999999999999999999988877777
Q ss_pred eeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc--CcEEEEEecCC
Q 005291 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS--KLKILITSATL 160 (704)
Q Consensus 83 ~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~--~~kiI~~SATl 160 (704)
+.. .....+|+|+|+|+|++ .....+.++++|||||||++. .++... +..++...+. ...+++||||+
T Consensus 291 ~~~-----~~~~~~IlV~TPGrLl~--~~~l~l~~l~~lVlDEAH~l~--~~~~~~-l~~Il~~l~~~~~~llil~SAT~ 360 (666)
T 3o8b_A 291 VRT-----ITTGAPVTYSTYGKFLA--DGGCSGGAYDIIICDECHSTD--STTILG-IGTVLDQAETAGARLVVLATATP 360 (666)
T ss_dssp SCE-----ECCCCSEEEEEHHHHHH--TTSCCTTSCSEEEETTTTCCS--HHHHHH-HHHHHHHTTTTTCSEEEEEESSC
T ss_pred cEe-----ccCCCCEEEECcHHHHh--CCCcccCcccEEEEccchhcC--ccHHHH-HHHHHHhhhhcCCceEEEECCCC
Confidence 543 34568999999999842 122356779999999999644 444322 3333333332 33478889999
Q ss_pred ChHHHhcccCCCCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhc
Q 005291 161 DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (704)
Q Consensus 161 ~~~~~~~~~~~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~ 240 (704)
+.. +. ...+ ...++...+.. ...+..... . ......+++||||+++++++.+++.|.+.
T Consensus 361 ~~~-i~---~~~p------~i~~v~~~~~~--~i~~~~~~~----~-l~~~~~~~vLVFv~Tr~~ae~la~~L~~~---- 419 (666)
T 3o8b_A 361 PGS-VT---VPHP------NIEEVALSNTG--EIPFYGKAI----P-IEAIRGGRHLIFCHSKKKCDELAAKLSGL---- 419 (666)
T ss_dssp TTC-CC---CCCT------TEEEEECBSCS--SEEETTEEE----C-GGGSSSSEEEEECSCHHHHHHHHHHHHTT----
T ss_pred Ccc-cc---cCCc------ceEEEeecccc--hhHHHHhhh----h-hhhccCCcEEEEeCCHHHHHHHHHHHHhC----
Confidence 752 11 0000 01111111110 000000000 0 11235789999999999999999999864
Q ss_pred CCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCcccccc----ccCCCCccccc
Q 005291 241 DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQ----YNPSSGMYSLD 316 (704)
Q Consensus 241 ~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~----~~~~~g~~~l~ 316 (704)
++.+..+||+|+.++ +.++..+||||||++++|||+| |++|||+|+.+..+ |||..|+..+
T Consensus 420 ------g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~- 484 (666)
T 3o8b_A 420 ------GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETT- 484 (666)
T ss_dssp ------TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEE-
T ss_pred ------CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccc-
Confidence 678999999999765 3456679999999999999998 99999999988775 6677777553
Q ss_pred cccccHHhHHhhccccCCCCCceEEEecCCcccc
Q 005291 317 VVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYH 350 (704)
Q Consensus 317 ~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~~~ 350 (704)
..|.|.++|+||+||+||.++|. |.||++.+..
T Consensus 485 ~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 485 TVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGERP 517 (666)
T ss_dssp EEECBHHHHHHHHTTBCSSSCEE-EEESCCCCBC
T ss_pred cCcCCHHHHHHHhccCCCCCCCE-EEEEecchhh
Confidence 67999999999999999988999 9999887654
No 7
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-37 Score=377.04 Aligned_cols=327 Identities=15% Similarity=0.184 Sum_probs=244.3
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
++++++|.++++.+.+|++++++||||||||+.....+.... ..+++++|++|+++|+.|+++++.+.++ . +|+
T Consensus 183 f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~~-~----Vgl 256 (1108)
T 3l9o_A 183 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPIKALSNQKYRELLAEFG-D----VGL 256 (1108)
T ss_dssp SCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHTS-S----EEE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEcCcHHHHHHHHHHHHHHhC-C----ccE
Confidence 568899999999999999999999999999966554444332 3467999999999999999999998887 3 443
Q ss_pred eeecccccCcccceEEcchHHHHHHHHhCCC-CCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC-C
Q 005291 84 AIRFEDRTSERTLIKYLTDGVLLREILSNPD-LSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL-D 161 (704)
Q Consensus 84 ~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~-l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl-~ 161 (704)
+..+......++|+|+|+|+|.+.+..+.. +.++++||||||| +..+..+... +..++...+.+.++|+||||+ +
T Consensus 257 -ltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~rg~~-~e~ii~~l~~~~qvl~lSATipn 333 (1108)
T 3l9o_A 257 -MTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVV-WEETIILLPDKVRYVFLSATIPN 333 (1108)
T ss_dssp -ECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHHHHH-HHHHHHHSCTTSEEEEEECSCSS
T ss_pred -EeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhh-hccccchHHH-HHHHHHhcCCCceEEEEcCCCCC
Confidence 333444556789999999999999977664 7899999999999 6766655443 555555556689999999999 4
Q ss_pred hHHHhcccC-----CCCccccCCCcCceeEEecCCCCc----------c-----hH------------------------
Q 005291 162 GEKVSKFFS-----NCPTLNVPGKLYPVEILHSKERPT----------S-----YL------------------------ 197 (704)
Q Consensus 162 ~~~~~~~~~-----~~~~i~i~~~~~pv~~~~~~~~~~----------~-----~~------------------------ 197 (704)
...+..|++ .+.++..+.+..|+..++...... . +.
T Consensus 334 ~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 413 (1108)
T 3l9o_A 334 AMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKG 413 (1108)
T ss_dssp CHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccc
Confidence 445666654 245566677778876654321100 0 00
Q ss_pred ------------HHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCC-------------------C-C-
Q 005291 198 ------------ESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDE-------------------G-S- 244 (704)
Q Consensus 198 ------------~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~-------------------~-~- 244 (704)
...+..++........+++||||+++.+++.++..|......... + .
T Consensus 414 ~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l 493 (1108)
T 3l9o_A 414 QTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDREL 493 (1108)
T ss_dssp -----------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCC
T ss_pred cccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhh
Confidence 223344555555566789999999999999999988542111000 0 0
Q ss_pred --------CCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccc
Q 005291 245 --------CMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLD 316 (704)
Q Consensus 245 --------~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~ 316 (704)
.....|.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++. .||+. .
T Consensus 494 ~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~----~~d~~------~ 563 (1108)
T 3l9o_A 494 PQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR----KWDGQ------Q 563 (1108)
T ss_dssp HHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSE----EESSS------C
T ss_pred hhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCc----ccCcc------c
Confidence 00122899999999999999999999999999999999999999999999998543 23332 1
Q ss_pred cccccHHhHHhhccccCCCC---CceEEEecCCccc
Q 005291 317 VVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVY 349 (704)
Q Consensus 317 ~~~iS~~~~~QR~GRaGR~~---~G~c~~L~~~~~~ 349 (704)
..|+|..+|+||+|||||.+ .|.||.+|++...
T Consensus 564 ~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~ 599 (1108)
T 3l9o_A 564 FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKME 599 (1108)
T ss_dssp EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCC
T ss_pred cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcC
Confidence 34889999999999999996 8999999987644
No 8
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.2e-36 Score=380.26 Aligned_cols=449 Identities=16% Similarity=0.164 Sum_probs=294.5
Q ss_pred hHHHHHHHHH-hccCCEEEEEcCCCCcHHHHHHHHHH-hcC---------CCCCcEEEEcchhhHHHHHHHHHHHHHhC-
Q 005291 7 LQYEETIVET-VEQNPVVVVIGETGSGKSTQLSQILH-RHG---------YTKSGIIGVTQPRRVAAVSVARRVAQELG- 74 (704)
Q Consensus 7 ~~~~~~il~~-l~~~~~vii~gpTGsGKTt~l~~~l~-~~~---------~~~~~~ilv~~P~r~la~~~a~rva~~~~- 74 (704)
.+.|.++++. +..+++++|+||||||||......+. ... ...+.+++++.|+++|+.|+++.+.+.++
T Consensus 81 n~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~ 160 (1724)
T 4f92_B 81 NRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLAT 160 (1724)
T ss_dssp CHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhh
Confidence 3678888876 46789999999999999944333322 211 12356899999999999999999877654
Q ss_pred --CccCceeeeeeecccccCcccceEEcchHHHHHHHHhCC---CCCCCceEEEeCCCcCCCCHH---HHHHHHHHHH--
Q 005291 75 --VRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNTD---ILLGLVKRLV-- 144 (704)
Q Consensus 75 --~~vg~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~---~l~~~~~IIiDEaHer~l~~d---~l~~llk~l~-- 144 (704)
..++...| ...........++|+|+||+.+..++.... .++++++|||||+|. ++.+ .+..++.++.
T Consensus 161 ~gi~V~~~tG-d~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~--l~d~RG~~lE~~l~rl~~~ 237 (1724)
T 4f92_B 161 YGITVAELTG-DHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHL--LHDDRGPVLEALVARAIRN 237 (1724)
T ss_dssp TTCCEEECCS-SCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGG--GGSTTHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEC-CCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchh--cCCccHHHHHHHHHHHHHH
Confidence 34444444 122222223468999999999754443322 478899999999993 3222 2333333332
Q ss_pred -HHhccCcEEEEEecCC-ChHHHhcccCCCC-----ccccCCCcCceeEEecCCCCcchH---HHHHHHHHHH-HccCCC
Q 005291 145 -NLRASKLKILITSATL-DGEKVSKFFSNCP-----TLNVPGKLYPVEILHSKERPTSYL---ESALKTAIDI-HVREPE 213 (704)
Q Consensus 145 -~~~~~~~kiI~~SATl-~~~~~~~~~~~~~-----~i~i~~~~~pv~~~~~~~~~~~~~---~~~~~~~~~i-~~~~~~ 213 (704)
...+.++|+|+||||+ |.+.+++|++..+ ++....|+.|++.++......... ......+... .....+
T Consensus 238 ~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 317 (1724)
T 4f92_B 238 IEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGK 317 (1724)
T ss_dssp HHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSS
T ss_pred HHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcC
Confidence 2344589999999999 6788999997532 233334556666555432222221 1111222222 223346
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhhcCCC---------------------------CCCCeEEEeccCCCCHHHHhhcc
Q 005291 214 GDVLIFMTGQDDIEKLVSKLEDKIRSLDEG---------------------------SCMDAVILPLHGSLPPEMQVRVF 266 (704)
Q Consensus 214 g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~---------------------------~~~~~~v~~lh~~l~~~~r~~v~ 266 (704)
+++||||+++++++.+++.|.+........ ......|..|||+|+.++|..++
T Consensus 318 ~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE 397 (1724)
T 4f92_B 318 NQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVE 397 (1724)
T ss_dssp CCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHH
Confidence 799999999999999999987754321100 01134588999999999999999
Q ss_pred CCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCC---CceEEEe
Q 005291 267 SPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRL 343 (704)
Q Consensus 267 ~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~---~G~c~~L 343 (704)
+.|++|.++|||||+++++|||+|++++||.. ...|||..|.. .++|..++.||+|||||.+ .|.++.+
T Consensus 398 ~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~----~~~~~~~~~~~----~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~ 469 (1724)
T 4f92_B 398 DLFADKHIQVLVSTATLAWGVNLPAHTVIIKG----TQVYSPEKGRW----TELGALDILQMLGRAGRPQYDTKGEGILI 469 (1724)
T ss_dssp HHHHTTCCCEEEECHHHHHHSCCCBSEEEEEC----CEEEETTTTEE----EECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred HHHHCCCCeEEEEcchhHhhCCCCCceEEEeC----CEEecCcCCCc----ccCCHHHHHHhhhhccCCCCCCccEEEEE
Confidence 99999999999999999999999999999962 35688876643 4789999999999999974 6999999
Q ss_pred cCCcccccc--CCCCCCC--ccccCChHHHHHhhcccCc-ccc-cc---------------------------ccccCCC
Q 005291 344 YPSTVYHDE--FLDVTVP--EIQRSSLAGSVLYLKSLDL-SDI-NV---------------------------LKFDFLD 390 (704)
Q Consensus 344 ~~~~~~~~~--~~~~~~p--ei~r~~l~~~~L~l~~l~~-~~~-~~---------------------------~~~~~~~ 390 (704)
.++++...+ +...+.| .-+...+.+.++.-..+|. .+. +. ...+.++
T Consensus 470 ~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~ 549 (1724)
T 4f92_B 470 TSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLD 549 (1724)
T ss_dssp EESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCH
T ss_pred ecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHH
Confidence 887654331 2222222 1111233333333222221 110 00 0001111
Q ss_pred CCCHHHHHHHHHHHHHccccc--CC-C--CCCHHHHHHhcCCCChHhHHHHHHhhhcCC-HHHHHHHHHHhcc-CCcccC
Q 005291 391 PPSSESLEDALKQLYLIDAID--EN-G--SITSIGRTMAELPLEPSLSRMLMEANEFGC-LSQALTVAAMLSA-ETTLLP 463 (704)
Q Consensus 391 ~P~~~~l~~al~~L~~lgald--~~-~--~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c-~~~~l~i~a~ls~-~~~f~~ 463 (704)
....+.+..|+..|...|.|. ++ | ..|++||.|+.+.++|..++.+.......+ ..+++.+.|+.+. .++.++
T Consensus 550 ~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R 629 (1724)
T 4f92_B 550 QRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVR 629 (1724)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcC
Confidence 122345778999999999994 32 3 689999999999999999999998876554 4467777766544 344444
Q ss_pred CCC
Q 005291 464 GRS 466 (704)
Q Consensus 464 ~~~ 466 (704)
..+
T Consensus 630 ~~E 632 (1724)
T 4f92_B 630 EEE 632 (1724)
T ss_dssp GGG
T ss_pred HHH
Confidence 433
No 9
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.5e-38 Score=347.42 Aligned_cols=313 Identities=17% Similarity=0.207 Sum_probs=219.7
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCC--CCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceee
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGY--TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~--~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg 82 (704)
+.+++|.+++..+.+++++++.+|||||||+.....+..... ..+.++++++|+++++.|+++++...... .+..++
T Consensus 62 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~ 140 (414)
T 3eiq_A 62 KPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDY-MGASCH 140 (414)
T ss_dssp SCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGG-SCCCEE
T ss_pred CCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcc-cCceEE
Confidence 578899999999999999999999999999665544443322 24568999999999999999988765422 222232
Q ss_pred eeeeccc-------ccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEE
Q 005291 83 YAIRFED-------RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (704)
Q Consensus 83 ~~~~~~~-------~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI 154 (704)
....... ......+|+|+|++.|.+.+.... .+.++++||+||||+ ..+.++. ..+..++...+.+.++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~-~~~~~~~-~~~~~~~~~~~~~~~~i 218 (414)
T 3eiq_A 141 ACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE-MLSRGFK-DQIYDIFQKLNSNTQVV 218 (414)
T ss_dssp ECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH-HHHTTTH-HHHHHHHTTSCTTCEEE
T ss_pred EEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH-hhccCcH-HHHHHHHHhCCCCCeEE
Confidence 2221111 112457899999999999987655 578899999999994 3332333 33445555555589999
Q ss_pred EEecCCChHH---HhcccCCCCccccCCCcC---ceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHH
Q 005291 155 ITSATLDGEK---VSKFFSNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEK 228 (704)
Q Consensus 155 ~~SATl~~~~---~~~~~~~~~~i~i~~~~~---pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~ 228 (704)
+||||++... ...++.+...+.+..... .+...+......+. ....+..+......+++||||+++++++.
T Consensus 219 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lvf~~~~~~~~~ 295 (414)
T 3eiq_A 219 LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEW---KLDTLCDLYETLTITQAVIFINTRRKVDW 295 (414)
T ss_dssp EECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTT---HHHHHHHHHHSSCCSSCEEECSCHHHHHH
T ss_pred EEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHh---HHHHHHHHHHhCCCCcEEEEeCCHHHHHH
Confidence 9999997654 355665554444433222 22233332222232 23344455555677899999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccC
Q 005291 229 LVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNP 308 (704)
Q Consensus 229 ~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~ 308 (704)
+++.|.+. ++.+..+||+++.++|.++++.|++|..+|||||+++++|+|+|++++||+.+.
T Consensus 296 l~~~l~~~----------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~-------- 357 (414)
T 3eiq_A 296 LTEKMHAR----------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL-------- 357 (414)
T ss_dssp HHHHHHTT----------TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSC--------
T ss_pred HHHHHHhc----------CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCC--------
Confidence 99999764 678899999999999999999999999999999999999999999999998554
Q ss_pred CCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccccc
Q 005291 309 SSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (704)
Q Consensus 309 ~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~~ 351 (704)
|.|..+|.||+|||||. .+|.||.+|++.+...
T Consensus 358 ----------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 391 (414)
T 3eiq_A 358 ----------PTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRT 391 (414)
T ss_dssp ----------CSSTHHHHHHSCCC-------CEEEEECSTHHHH
T ss_pred ----------CCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHH
Confidence 55788999999999999 6899999999876643
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=6.3e-37 Score=333.65 Aligned_cols=318 Identities=17% Similarity=0.191 Sum_probs=231.6
Q ss_pred CchHHHHHHHHHhccC--CEEEEEcCCCCcHHHHHHHHHHhcCC--CCCcEEEEcchhhHHHHHHHHHHHHHhCCccCce
Q 005291 5 PILQYEETIVETVEQN--PVVVVIGETGSGKSTQLSQILHRHGY--TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~--~~vii~gpTGsGKTt~l~~~l~~~~~--~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~ 80 (704)
..+++|.++++.+..+ +++++++|||||||......+..... ..+.++++++|+++++.|+++++.+.... .+..
T Consensus 27 ~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~ 105 (395)
T 3pey_A 27 KPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKF-TKIT 105 (395)
T ss_dssp SCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTT-SCCC
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcc-cCee
Confidence 3578999999999888 89999999999999655444443322 24568999999999999999988765432 2222
Q ss_pred eeeee--ecccccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEe
Q 005291 81 VGYAI--RFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (704)
Q Consensus 81 vg~~~--~~~~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~S 157 (704)
++... ..........+|+++|++.+.+.+.... .+.++++||+||||+..-+.+ ....+..+....+.+.++++||
T Consensus 106 ~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~-~~~~~~~~~~~~~~~~~~i~~S 184 (395)
T 3pey_A 106 SQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQG-LGDQCIRVKRFLPKDTQLVLFS 184 (395)
T ss_dssp EEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTT-HHHHHHHHHHTSCTTCEEEEEE
T ss_pred EEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccc-cHHHHHHHHHhCCCCcEEEEEE
Confidence 22211 2222333467999999999998886554 688999999999995322123 3333455555555589999999
Q ss_pred cCCChHH---HhcccCCCCccccCCCc---CceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHH
Q 005291 158 ATLDGEK---VSKFFSNCPTLNVPGKL---YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVS 231 (704)
Q Consensus 158 ATl~~~~---~~~~~~~~~~i~i~~~~---~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~ 231 (704)
||++... ...++.+...+.+.... ..+...+..... .......+..+......+++||||+++++++.+++
T Consensus 185 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~ 261 (395)
T 3pey_A 185 ATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKN---EADKFDVLTELYGLMTIGSSIIFVATKKTANVLYG 261 (395)
T ss_dssp SCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSS---HHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHH
T ss_pred ecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCc---hHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHH
Confidence 9997642 33444444444333322 222333322222 22333444455555567899999999999999999
Q ss_pred HHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCC
Q 005291 232 KLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (704)
Q Consensus 232 ~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g 311 (704)
.|.+. +..+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+.+.++
T Consensus 262 ~l~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~--------- 322 (395)
T 3pey_A 262 KLKSE----------GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPT--------- 322 (395)
T ss_dssp HHHHT----------TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCB---------
T ss_pred HHHhc----------CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCC---------
Confidence 99875 67789999999999999999999999999999999999999999999999966532
Q ss_pred ccccccccccHHhHHhhccccCCC-CCceEEEecCCccc
Q 005291 312 MYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (704)
Q Consensus 312 ~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~ 349 (704)
+...+.|..+|.||+|||||. .+|.|+.+++..+.
T Consensus 323 ---~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 358 (395)
T 3pey_A 323 ---LANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358 (395)
T ss_dssp ---CTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHH
T ss_pred ---CCcCCCCHHHhhHhccccccCCCCceEEEEEechHH
Confidence 233457999999999999999 56999999986543
No 11
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=5e-37 Score=336.76 Aligned_cols=317 Identities=16% Similarity=0.176 Sum_probs=231.4
Q ss_pred chHHHHHHHHHhccC--CEEEEEcCCCCcHHHHHH-HHHHhcCC-CCCcEEEEcchhhHHHHHHHHHHHHHhCCccCcee
Q 005291 6 ILQYEETIVETVEQN--PVVVVIGETGSGKSTQLS-QILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (704)
Q Consensus 6 i~~~~~~il~~l~~~--~~vii~gpTGsGKTt~l~-~~l~~~~~-~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~v 81 (704)
.+++|.++++.+.++ +++++++|||||||.... +++..... ..+.++++++|+++++.|+++++.+......+..+
T Consensus 48 ~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 127 (412)
T 3fht_A 48 PSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKL 127 (412)
T ss_dssp CCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCE
T ss_pred CCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceE
Confidence 578899999999887 899999999999995543 33333322 23448999999999999999988776554334455
Q ss_pred eeeeeccc---ccCcccceEEcchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEE
Q 005291 82 GYAIRFED---RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (704)
Q Consensus 82 g~~~~~~~---~~~~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~ 156 (704)
++...... ......+|+|+|++.+.+.+.... .+.++++||+||+|. ..+.......+..+....+.+.++++|
T Consensus 128 ~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~-~~~~~~~~~~~~~~~~~~~~~~~~i~~ 206 (412)
T 3fht_A 128 AYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV-MIATQGHQDQSIRIQRMLPRNCQMLLF 206 (412)
T ss_dssp EEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHH-HHSTTTTHHHHHHHHHTSCTTCEEEEE
T ss_pred EEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHH-HhhcCCcHHHHHHHHhhCCCCceEEEE
Confidence 54433322 223457899999999999886533 468899999999994 333222223344555555558999999
Q ss_pred ecCCChHH---HhcccCCCCccccCCC---cCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHH
Q 005291 157 SATLDGEK---VSKFFSNCPTLNVPGK---LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLV 230 (704)
Q Consensus 157 SATl~~~~---~~~~~~~~~~i~i~~~---~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~ 230 (704)
|||++... ...++.+...+.+... ...+...+...... ......+..+......+++||||+++++++.++
T Consensus 207 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 283 (412)
T 3fht_A 207 SATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR---DEKFQALCNLYGAITIAQAMIFCHTRKTASWLA 283 (412)
T ss_dssp ESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSH---HHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHH
T ss_pred EeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCCh---HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHH
Confidence 99997753 4455555554444332 22233333332222 223334444444445679999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCC
Q 005291 231 SKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSS 310 (704)
Q Consensus 231 ~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~ 310 (704)
+.|.+. +..+..+||+|+.++|.++++.|++|+.+|||||+++++|+|+|++++||+++.+....
T Consensus 284 ~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~----- 348 (412)
T 3fht_A 284 AELSKE----------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD----- 348 (412)
T ss_dssp HHHHHT----------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSS-----
T ss_pred HHHHhC----------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCC-----
Confidence 999875 67789999999999999999999999999999999999999999999999976533221
Q ss_pred CccccccccccHHhHHhhccccCCC-CCceEEEecCCcc
Q 005291 311 GMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (704)
Q Consensus 311 g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~ 348 (704)
.+.|..+|.||+|||||. .+|.|+.+++...
T Consensus 349 -------~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 349 -------GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp -------SSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred -------CCcchheeecccCcccCCCCCceEEEEEcChh
Confidence 135889999999999998 6799999998654
No 12
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=5.5e-38 Score=349.24 Aligned_cols=296 Identities=20% Similarity=0.253 Sum_probs=208.4
Q ss_pred HHHHHHHhccCCEEEEEcCCCCcHHHH-HHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecc
Q 005291 10 EETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFE 88 (704)
Q Consensus 10 ~~~il~~l~~~~~vii~gpTGsGKTt~-l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~ 88 (704)
+....+.+.++++++++||||||||+. +.+++.... ..+.+++|++|+|+++.|+++++. |..+++.....
T Consensus 11 ~~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~-~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~ 82 (459)
T 2z83_A 11 GRGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAI-QQRLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAV 82 (459)
T ss_dssp ----CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHH-HTTCCEEEEECSHHHHHHHHHHTT-------TSCEEECC---
T ss_pred HHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHH-hCCCcEEEECchHHHHHHHHHHhc-------CceEeEEeccc
Confidence 334456678899999999999999964 444443322 245689999999999999998874 23344333222
Q ss_pred c-ccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhc
Q 005291 89 D-RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSK 167 (704)
Q Consensus 89 ~-~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~ 167 (704)
. ...+...+.++|.+.+.+.+..++.+.++++|||||||++....+....++..... . .+.++|+||||++.+. ..
T Consensus 83 ~~~~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~-~~~~~il~SAT~~~~~-~~ 159 (459)
T 2z83_A 83 QREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-L-GEAAAIFMTATPPGTT-DP 159 (459)
T ss_dssp -----CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-T-TSCEEEEECSSCTTCC-CS
T ss_pred ccCCCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc-c-CCccEEEEEcCCCcch-hh
Confidence 1 12345678899999999999988899999999999999875555556665555443 2 3899999999997542 22
Q ss_pred cc-CCCCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCC
Q 005291 168 FF-SNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCM 246 (704)
Q Consensus 168 ~~-~~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~ 246 (704)
+. .+.++..+. ...+...+. .....+ ....+++||||+++++++.+++.|.+.
T Consensus 160 ~~~~~~pi~~~~----------~~~~~~~~~-~~~~~l-----~~~~~~~LVF~~s~~~~~~l~~~L~~~---------- 213 (459)
T 2z83_A 160 FPDSNAPIHDLQ----------DEIPDRAWS-SGYEWI-----TEYAGKTVWFVASVKMGNEIAMCLQRA---------- 213 (459)
T ss_dssp SCCCSSCEEEEE----------CCCCSSCCS-SCCHHH-----HHCCSCEEEECSCHHHHHHHHHHHHHT----------
T ss_pred hccCCCCeEEec----------ccCCcchhH-HHHHHH-----HhcCCCEEEEeCChHHHHHHHHHHHhc----------
Confidence 21 122332211 111111110 000111 113689999999999999999999875
Q ss_pred CeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCcccccccc--CCCCccccccccccHHh
Q 005291 247 DAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYN--PSSGMYSLDVVQISKVQ 324 (704)
Q Consensus 247 ~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~--~~~g~~~l~~~~iS~~~ 324 (704)
++.+..+||. +|.++++.|++|+.+|||||+++++|||||+ ++|||+|+.+.+.|+ +...+..+...|.|.++
T Consensus 214 g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~ 288 (459)
T 2z83_A 214 GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSAS 288 (459)
T ss_dssp TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHH
T ss_pred CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHH
Confidence 6778899984 7889999999999999999999999999999 999999988887765 33333222448999999
Q ss_pred HHhhccccCCCC--CceEEEecCCc
Q 005291 325 ANQRVGRAGRTR--PGKCYRLYPST 347 (704)
Q Consensus 325 ~~QR~GRaGR~~--~G~c~~L~~~~ 347 (704)
|+||+|||||.+ +|.||.+++..
T Consensus 289 ~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 289 AAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHhccccCCCCCCCCeEEEEEccc
Confidence 999999999994 89999999876
No 13
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.1e-36 Score=375.58 Aligned_cols=451 Identities=15% Similarity=0.105 Sum_probs=297.7
Q ss_pred hHHHHHHHHHh-ccCCEEEEEcCCCCcHHHHHHHHHHhcC-CCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeee
Q 005291 7 LQYEETIVETV-EQNPVVVVIGETGSGKSTQLSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (704)
Q Consensus 7 ~~~~~~il~~l-~~~~~vii~gpTGsGKTt~l~~~l~~~~-~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~ 84 (704)
.+.|.+++..+ ..+++++|+||||||||+.....+.... ..++++++++.|+|+|+.|+++.+.+.++...|..|+..
T Consensus 928 npiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~l 1007 (1724)
T 4f92_B 928 NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLL 1007 (1724)
T ss_dssp CHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEEC
T ss_pred CHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEE
Confidence 45788888887 5678899999999999965544444332 234678999999999999999999888776666666532
Q ss_pred ee---cccccCcccceEEcchHHHHHHHHh---CCCCCCCceEEEeCCCcCCCCH-HHHHHHH---HHHHHHhccCcEEE
Q 005291 85 IR---FEDRTSERTLIKYLTDGVLLREILS---NPDLSPYSVIILDEAHERSLNT-DILLGLV---KRLVNLRASKLKIL 154 (704)
Q Consensus 85 ~~---~~~~~~~~~~I~~~T~g~Ll~~l~~---~~~l~~~~~IIiDEaHer~l~~-d~l~~ll---k~l~~~~~~~~kiI 154 (704)
.. .+.....+.+|+|+|||.+...+.. ...++++++||+||+|...-+. ..+..++ +.+....+.+.|+|
T Consensus 1008 tGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI 1087 (1724)
T 4f92_B 1008 TGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIV 1087 (1724)
T ss_dssp CSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEE
T ss_pred ECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEE
Confidence 21 1122224678999999998665533 2257889999999999422111 1233333 33333444589999
Q ss_pred EEecCC-ChHHHhcccCCC--Ccc--ccCCCcCceeEEecCCCCcchHHH---HHHHHH-HHHccCCCCCEEEEeCCHHH
Q 005291 155 ITSATL-DGEKVSKFFSNC--PTL--NVPGKLYPVEILHSKERPTSYLES---ALKTAI-DIHVREPEGDVLIFMTGQDD 225 (704)
Q Consensus 155 ~~SATl-~~~~~~~~~~~~--~~i--~i~~~~~pv~~~~~~~~~~~~~~~---~~~~~~-~i~~~~~~g~iLVFl~~~~~ 225 (704)
+||||+ |++.+++|++.. ..+ ....|..|++.+........+... ....+. .+....+.+++||||+++..
T Consensus 1088 ~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~ 1167 (1724)
T 4f92_B 1088 ALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQ 1167 (1724)
T ss_dssp EEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHH
T ss_pred EEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHH
Confidence 999999 778899999743 233 333466666665433222222111 111111 12233567899999999999
Q ss_pred HHHHHHHHHHHhhhcCCC------------------------CCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcc
Q 005291 226 IEKLVSKLEDKIRSLDEG------------------------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTN 281 (704)
Q Consensus 226 i~~~~~~L~~~~~~~~~~------------------------~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTn 281 (704)
++.++..|.......... .+....|.+|||+|++++|..+++.|++|.++|||||+
T Consensus 1168 ~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~ 1247 (1724)
T 4f92_B 1168 TRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASR 1247 (1724)
T ss_dssp HHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEG
T ss_pred HHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEECh
Confidence 999998886654221100 00123589999999999999999999999999999999
Q ss_pred cccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCC---CceEEEecCCccccccCCCCCC
Q 005291 282 IAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHDEFLDVTV 358 (704)
Q Consensus 282 iae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~---~G~c~~L~~~~~~~~~~~~~~~ 358 (704)
++++|||+|++.+||.+ ...||+... ...+.|..+|.||+|||||.+ .|.|+.++..............
T Consensus 1248 tlA~GVnlPa~~VVI~~----~~~~dg~~~----~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~ 1319 (1724)
T 4f92_B 1248 SLCWGMNVAAHLVIIMD----TQYYNGKIH----AYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYE 1319 (1724)
T ss_dssp GGSSSCCCCBSEEEEEC----SEEEETTTT----EEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTS
T ss_pred HHHcCCCCCccEEEEec----CccccCccc----ccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCC
Confidence 99999999999999963 235665442 224778999999999999984 6999999876543321111122
Q ss_pred CccccCCh----HHHHHhhcccCcc-c----cccccccC-------------CCC--------CCHHHHHHHHHHHHHcc
Q 005291 359 PEIQRSSL----AGSVLYLKSLDLS-D----INVLKFDF-------------LDP--------PSSESLEDALKQLYLID 408 (704)
Q Consensus 359 pei~r~~l----~~~~L~l~~l~~~-~----~~~~~~~~-------------~~~--------P~~~~l~~al~~L~~lg 408 (704)
|+-..+.| ...++.....|.- + .+.....| +.. .-.+.++.+++.|.+.|
T Consensus 1320 ~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~ 1399 (1724)
T 4f92_B 1320 PLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK 1399 (1724)
T ss_dssp CBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHHHCC
Confidence 33334433 3333333333321 1 00011111 111 12345678999999999
Q ss_pred ccc--CCC--CCCHHHHHHhcCCCChHhHHHHHHhhhcCCH-HHHHHHHHHhcc-CCcccCCC
Q 005291 409 AID--ENG--SITSIGRTMAELPLEPSLSRMLMEANEFGCL-SQALTVAAMLSA-ETTLLPGR 465 (704)
Q Consensus 409 ald--~~~--~lT~lG~~~~~lpl~p~~~~~ll~~~~~~c~-~~~l~i~a~ls~-~~~f~~~~ 465 (704)
+|. +++ .+|++|+.++.++++|..++++..+...++. ..++.+.|.... .++.++..
T Consensus 1400 ~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~a~ef~~i~~R~~ 1462 (1724)
T 4f92_B 1400 CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHH 1462 (1724)
T ss_dssp SEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTSGGGTTCCCCTT
T ss_pred CEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHhcCCccccccccccc
Confidence 994 444 5699999999999999999999988766553 456777665433 34444433
No 14
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=8.6e-38 Score=375.15 Aligned_cols=384 Identities=16% Similarity=0.208 Sum_probs=266.4
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHh-CCccCceee
Q 005291 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL-GVRLGEEVG 82 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~-~~~vg~~vg 82 (704)
++.+++|.+++..+.+|++++++||||||||+.....+... ...+++++|++|+++|+.|+++++.+.+ +..++...|
T Consensus 38 f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~-~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G 116 (997)
T 4a4z_A 38 FELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMA-HRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITG 116 (997)
T ss_dssp SCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHH-HHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECS
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 45789999999999999999999999999995322222211 1246789999999999999999998765 334433333
Q ss_pred eeeecccccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC-
Q 005291 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL- 160 (704)
Q Consensus 83 ~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl- 160 (704)
+......++|+|+|+++|.+.+.... .+.++++||||||| +..+.++... +..++...+++.++|++|||+
T Consensus 117 -----~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH-~l~d~~~g~~-~e~ii~~l~~~v~iIlLSAT~~ 189 (997)
T 4a4z_A 117 -----DVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YVNDQDRGVV-WEEVIIMLPQHVKFILLSATVP 189 (997)
T ss_dssp -----SCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT-CCCTTCTTCC-HHHHHHHSCTTCEEEEEECCCT
T ss_pred -----CCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcc-cccccchHHH-HHHHHHhcccCCCEEEEcCCCC
Confidence 23334568999999999999886654 67899999999999 5655544332 334444455589999999999
Q ss_pred ChHHHhcccC-----CCCccccCCCcCceeEEecCCC--------CcchH------------------------------
Q 005291 161 DGEKVSKFFS-----NCPTLNVPGKLYPVEILHSKER--------PTSYL------------------------------ 197 (704)
Q Consensus 161 ~~~~~~~~~~-----~~~~i~i~~~~~pv~~~~~~~~--------~~~~~------------------------------ 197 (704)
+...|.+|++ .+.++..+.+..|+..++.... ...+.
T Consensus 190 n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 269 (997)
T 4a4z_A 190 NTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGS 269 (997)
T ss_dssp THHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC------------------
T ss_pred ChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccc
Confidence 6677888885 3456777888888876543210 00000
Q ss_pred ---------------------------------------------------HHHHHHHHHHHccCCCCCEEEEeCCHHHH
Q 005291 198 ---------------------------------------------------ESALKTAIDIHVREPEGDVLIFMTGQDDI 226 (704)
Q Consensus 198 ---------------------------------------------------~~~~~~~~~i~~~~~~g~iLVFl~~~~~i 226 (704)
...+..++........+++|||+++++++
T Consensus 270 ~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~ 349 (997)
T 4a4z_A 270 TARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRC 349 (997)
T ss_dssp -----------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHH
Confidence 01133444555556678999999999999
Q ss_pred HHHHHHHHHHhh------------------hcCCC-----------CCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEE
Q 005291 227 EKLVSKLEDKIR------------------SLDEG-----------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFI 277 (704)
Q Consensus 227 ~~~~~~L~~~~~------------------~~~~~-----------~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIl 277 (704)
+.++..|.+... .+... ......+.++||+|++.+|..+++.|.+|.++||
T Consensus 350 e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVL 429 (997)
T 4a4z_A 350 EEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVL 429 (997)
T ss_dssp HHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEE
Confidence 999988853100 00000 0012258899999999999999999999999999
Q ss_pred EEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCC---CceEEEecCCccccccCC
Q 005291 278 VSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHDEFL 354 (704)
Q Consensus 278 vaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~---~G~c~~L~~~~~~~~~~~ 354 (704)
|||+++++|||+|++ .||..+..+ ||+.. ..|+|..+|.||+|||||.+ .|.||.++..+..+..+.
T Consensus 430 vAT~~~a~GIDiP~~-~VVi~~~~k---~dg~~------~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~ 499 (997)
T 4a4z_A 430 FATETFAMGLNLPTR-TVIFSSIRK---HDGNG------LRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATF 499 (997)
T ss_dssp EECTHHHHSCCCCCS-EEEESCSEE---EETTE------EEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHH
T ss_pred EEchHhhCCCCCCCc-eEEEecccc---ccCcc------CCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHH
Confidence 999999999999995 455555544 55432 34889999999999999974 899999995433221111
Q ss_pred ---CCCCCccccC------ChHHHHHhhcccCccccccccccCCCCCCHHHHHHHHHHHHHc
Q 005291 355 ---DVTVPEIQRS------SLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDALKQLYLI 407 (704)
Q Consensus 355 ---~~~~pei~r~------~l~~~~L~l~~l~~~~~~~~~~~~~~~P~~~~l~~al~~L~~l 407 (704)
....|+.+++ ++...+|++...++.+ +..+.|.+.+....+....+.|..+
T Consensus 500 ~~~i~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~--~l~~sf~~~~~~~~~~~~~~~l~~l 559 (997)
T 4a4z_A 500 KEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEE--MIKYSFSENAKETLQPEHEKQIKVL 559 (997)
T ss_dssp HHHHHSCCCCCCCCCCCCHHHHHHHHHHCTTHHHH--HHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcccccccccchHHHHHHHhhccccHHH--HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1124555555 4455556666677666 6777777666555555544444444
No 15
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.5e-36 Score=332.99 Aligned_cols=308 Identities=17% Similarity=0.209 Sum_probs=224.1
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhcC------CCCCcEEEEcchhhHHHHHHHHHHHHHhC---C
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHG------YTKSGIIGVTQPRRVAAVSVARRVAQELG---V 75 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt-~l~~~l~~~~------~~~~~~ilv~~P~r~la~~~a~rva~~~~---~ 75 (704)
.+++|.+.++.+.+|+++++++|||||||. ++.+++.... ...+.+++++.|+|+|+.|+++.+.+... .
T Consensus 79 pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 158 (434)
T 2db3_A 79 PTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYL 158 (434)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSC
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCc
Confidence 468899999999999999999999999994 3333332221 11245899999999999999998866542 3
Q ss_pred ccCceeeeeeec--ccccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh--ccC
Q 005291 76 RLGEEVGYAIRF--EDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR--ASK 150 (704)
Q Consensus 76 ~vg~~vg~~~~~--~~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~--~~~ 150 (704)
.++...|..... ......+.+|+|+|||.|++.+.... .+.++++||+|||| +.++.++... ++.++... +.+
T Consensus 159 ~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah-~~~~~gf~~~-~~~i~~~~~~~~~ 236 (434)
T 2db3_A 159 KIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD-RMLDMGFSED-MRRIMTHVTMRPE 236 (434)
T ss_dssp CCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHH-HHTSTTTHHH-HHHHHHCTTSCSS
T ss_pred EEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHh-hhhccCcHHH-HHHHHHhcCCCCC
Confidence 333333311110 11122457999999999999886543 68899999999999 6666655444 44554432 347
Q ss_pred cEEEEEecCCChHH---HhcccCCCCccccCC---CcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHH
Q 005291 151 LKILITSATLDGEK---VSKFFSNCPTLNVPG---KLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (704)
Q Consensus 151 ~kiI~~SATl~~~~---~~~~~~~~~~i~i~~---~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~ 224 (704)
.+++++|||++.+. ...++.+...+.+.. ....+...+......+.. ..++++..... +++||||++++
T Consensus 237 ~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~----~~l~~~l~~~~-~~~lVF~~t~~ 311 (434)
T 2db3_A 237 HQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKR----SKLIEILSEQA-DGTIVFVETKR 311 (434)
T ss_dssp CEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHH----HHHHHHHHHCC-TTEEEECSSHH
T ss_pred ceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHH----HHHHHHHHhCC-CCEEEEEeCcH
Confidence 89999999997653 345665544333321 223344333332222222 22333333333 34999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccc
Q 005291 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQR 304 (704)
Q Consensus 225 ~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~ 304 (704)
+++.+++.|.+. ++.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|+|++||++++
T Consensus 312 ~a~~l~~~L~~~----------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~---- 377 (434)
T 2db3_A 312 GADFLASFLSEK----------EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDM---- 377 (434)
T ss_dssp HHHHHHHHHHHT----------TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSC----
T ss_pred HHHHHHHHHHhC----------CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECC----
Confidence 999999999875 678999999999999999999999999999999999999999999999999554
Q ss_pred cccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCcc
Q 005291 305 QYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (704)
Q Consensus 305 ~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~ 348 (704)
|.|..+|.||+||+||. ..|.|+.+|+.+.
T Consensus 378 --------------p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~ 408 (434)
T 2db3_A 378 --------------PSKIDDYVHRIGRTGRVGNNGRATSFFDPEK 408 (434)
T ss_dssp --------------CSSHHHHHHHHTTSSCTTCCEEEEEEECTTT
T ss_pred --------------CCCHHHHHHHhcccccCCCCCEEEEEEeccc
Confidence 55888999999999999 7899999998543
No 16
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=4.6e-37 Score=341.21 Aligned_cols=291 Identities=17% Similarity=0.229 Sum_probs=215.0
Q ss_pred HHH-hccCCEEEEEcCCCCcHHH-HHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeeccc-c
Q 005291 14 VET-VEQNPVVVVIGETGSGKST-QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED-R 90 (704)
Q Consensus 14 l~~-l~~~~~vii~gpTGsGKTt-~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~-~ 90 (704)
++. +..+++++++||||||||+ ++++++.... ..+.++++++|+|+++.|+++.+. |..++|...... .
T Consensus 12 i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~-~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~ 83 (451)
T 2jlq_A 12 DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREAL-LRRLRTLILAPTRVVAAEMEEALR-------GLPIRYQTPAVKSD 83 (451)
T ss_dssp CGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHTT-------TSCEEECCTTCSCC
T ss_pred HHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHH-hcCCcEEEECCCHHHHHHHHHHhc-------Cceeeeeecccccc
Confidence 444 4455666999999999996 4555554332 235689999999999999988763 344555544332 3
Q ss_pred cCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhcccC
Q 005291 91 TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS 170 (704)
Q Consensus 91 ~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~~~ 170 (704)
....+.|.++|+|.+.+.+...+.+.++++|||||||++....+....++... ..+++.++|+||||++......+++
T Consensus 84 ~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~--~~~~~~~~i~~SAT~~~~~~~~~~~ 161 (451)
T 2jlq_A 84 HTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTR--VEMGEAAAIFMTATPPGSTDPFPQS 161 (451)
T ss_dssp CCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHH--HHTTSCEEEEECSSCTTCCCSSCCC
T ss_pred CCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHh--hcCCCceEEEEccCCCccchhhhcC
Confidence 34567899999999999999989999999999999996533333333333221 2223899999999998765554554
Q ss_pred CCCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEE
Q 005291 171 NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVI 250 (704)
Q Consensus 171 ~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v 250 (704)
+.+++.+. +..|... |.. ...+ + .+..+++||||+++++++.+++.|.+. ++.+
T Consensus 162 ~~~~~~~~-~~~p~~~-~~~--~~~~-------l-----~~~~~~~lVF~~s~~~a~~l~~~L~~~----------g~~~ 215 (451)
T 2jlq_A 162 NSPIEDIE-REIPERS-WNT--GFDW-------I-----TDYQGKTVWFVPSIKAGNDIANCLRKS----------GKRV 215 (451)
T ss_dssp SSCEEEEE-CCCCSSC-CSS--SCHH-------H-----HHCCSCEEEECSSHHHHHHHHHHHHTT----------TCCE
T ss_pred CCceEecC-ccCCchh-hHH--HHHH-------H-----HhCCCCEEEEcCCHHHHHHHHHHHHHc----------CCeE
Confidence 55544433 2233111 110 0011 1 123679999999999999999999764 6778
Q ss_pred EeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCcccccc---ccccHHhHHh
Q 005291 251 LPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDV---VQISKVQANQ 327 (704)
Q Consensus 251 ~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~---~~iS~~~~~Q 327 (704)
..+||.+. .++++.|++|+.+|||||+++++|||+|+ ++|||+|+.+.+.|| ..+...+.. .|.|.++|.|
T Consensus 216 ~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~Q 289 (451)
T 2jlq_A 216 IQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPASAAQ 289 (451)
T ss_dssp EEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHHHHHH
T ss_pred EECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccceeeecccccCCHHHHHH
Confidence 89999754 57899999999999999999999999999 999999999999998 566666665 8999999999
Q ss_pred hccccCCCC--CceEEEecCC
Q 005291 328 RVGRAGRTR--PGKCYRLYPS 346 (704)
Q Consensus 328 R~GRaGR~~--~G~c~~L~~~ 346 (704)
|+|||||.+ +|.||.++..
T Consensus 290 r~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 290 RRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp HHTTSSCCTTCCCEEEEECSC
T ss_pred hccccCCCCCCCccEEEEeCC
Confidence 999999995 8999988753
No 17
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=6e-36 Score=327.25 Aligned_cols=311 Identities=17% Similarity=0.160 Sum_probs=228.6
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc-CC-CCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH-GY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~-~~-~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
.+++|.++++.+.+++++++.+|||||||+.....+... .. ..+.+++++.|+++++.|+++++.+.... .+..++.
T Consensus 44 ~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~ 122 (400)
T 1s2m_A 44 PSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKH-CGISCMV 122 (400)
T ss_dssp CCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT-TTCCEEE
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcc-cCceEEE
Confidence 678999999999999999999999999995443333332 22 23558999999999999999988765432 1222221
Q ss_pred eeecc------cccCcccceEEcchHHHHHHHHhC-CCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEE
Q 005291 84 AIRFE------DRTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (704)
Q Consensus 84 ~~~~~------~~~~~~~~I~~~T~g~Ll~~l~~~-~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~ 156 (704)
..... .......+|+++|++.+.+.+... ..+.++++||+|||| +..+.++ ...+..+....+...++++|
T Consensus 123 ~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH-~~~~~~~-~~~~~~i~~~~~~~~~~i~l 200 (400)
T 1s2m_A 123 TTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD-KMLSRDF-KTIIEQILSFLPPTHQSLLF 200 (400)
T ss_dssp ECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH-HHSSHHH-HHHHHHHHTTSCSSCEEEEE
T ss_pred EeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch-Hhhhhch-HHHHHHHHHhCCcCceEEEE
Confidence 11111 112345789999999999887654 368899999999999 4555554 34466666666558899999
Q ss_pred ecCCChHH---HhcccCCCCccccCCCc--CceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHH
Q 005291 157 SATLDGEK---VSKFFSNCPTLNVPGKL--YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVS 231 (704)
Q Consensus 157 SATl~~~~---~~~~~~~~~~i~i~~~~--~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~ 231 (704)
|||++... +..++.....+.+.... ..+..++........ . ..+..+......+++||||+++++++.+++
T Consensus 201 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-~---~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~ 276 (400)
T 1s2m_A 201 SATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQK-L---HCLNTLFSKLQINQAIIFCNSTNRVELLAK 276 (400)
T ss_dssp ESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGH-H---HHHHHHHHHSCCSEEEEECSSHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhH-H---HHHHHHHhhcCCCcEEEEEecHHHHHHHHH
Confidence 99997643 44555443333332221 223333332222222 1 222333333466799999999999999999
Q ss_pred HHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCC
Q 005291 232 KLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (704)
Q Consensus 232 ~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g 311 (704)
.|.+. ++.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+.+.
T Consensus 277 ~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~----------- 335 (400)
T 1s2m_A 277 KITDL----------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDF----------- 335 (400)
T ss_dssp HHHHH----------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSC-----------
T ss_pred HHHhc----------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCC-----------
Confidence 99876 677899999999999999999999999999999999999999999999998553
Q ss_pred ccccccccccHHhHHhhccccCCC-CCceEEEecCCccccc
Q 005291 312 MYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (704)
Q Consensus 312 ~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~~ 351 (704)
|.|..++.||+|||||. ++|.||.+|++++...
T Consensus 336 -------p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~ 369 (400)
T 1s2m_A 336 -------PKTAETYLHRIGRSGRFGHLGLAINLINWNDRFN 369 (400)
T ss_dssp -------CSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHH
T ss_pred -------CCCHHHHHHhcchhcCCCCCceEEEEeccchHHH
Confidence 56888999999999999 6899999999887643
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.9e-36 Score=322.65 Aligned_cols=310 Identities=20% Similarity=0.236 Sum_probs=230.3
Q ss_pred CchHHHHHHHHHhccC-CEEEEEcCCCCcHHHHHHHHHHhc-CCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceee
Q 005291 5 PILQYEETIVETVEQN-PVVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~-~~vii~gpTGsGKTt~l~~~l~~~-~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg 82 (704)
..+++|.++++.+.++ +++++.+|||||||+.....+... ....+.++++++|+++++.|+++++.+..+... ..++
T Consensus 28 ~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~v~ 106 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKN-LKIA 106 (367)
T ss_dssp SCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSC-CCEE
T ss_pred CCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCC-ceEE
Confidence 3578999999998887 699999999999996554444433 223456899999999999999999988765421 1122
Q ss_pred eeeeccc-----ccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEE
Q 005291 83 YAIRFED-----RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (704)
Q Consensus 83 ~~~~~~~-----~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~ 156 (704)
....... ......+|+++|++.+.+.+.... .+.++++||+||+|+ ..+.++.. .+..++...+.+.++++|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~-~~~~~~~~-~~~~~~~~~~~~~~~i~~ 184 (367)
T 1hv8_A 107 KIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE-MLNMGFIK-DVEKILNACNKDKRILLF 184 (367)
T ss_dssp EECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH-HHTTTTHH-HHHHHHHTSCSSCEEEEE
T ss_pred EEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchH-hhhhchHH-HHHHHHHhCCCCceEEEE
Confidence 1111111 111357899999999998886554 588999999999994 33333333 344555555558999999
Q ss_pred ecCCChHH---HhcccCCCCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHH
Q 005291 157 SATLDGEK---VSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKL 233 (704)
Q Consensus 157 SATl~~~~---~~~~~~~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L 233 (704)
|||++... +..++++...+..... ..+...+......+... .+..+.. ...+++||||+++++++.+++.|
T Consensus 185 SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L 258 (367)
T 1hv8_A 185 SATMPREILNLAKKYMGDYSFIKAKIN-ANIEQSYVEVNENERFE----ALCRLLK-NKEFYGLVFCKTKRDTKELASML 258 (367)
T ss_dssp CSSCCHHHHHHHHHHCCSEEEEECCSS-SSSEEEEEECCGGGHHH----HHHHHHC-STTCCEEEECSSHHHHHHHHHHH
T ss_pred eeccCHHHHHHHHHHcCCCeEEEecCC-CCceEEEEEeChHHHHH----HHHHHHh-cCCCcEEEEECCHHHHHHHHHHH
Confidence 99998653 4566665444433322 23444444333333332 2333332 56779999999999999999999
Q ss_pred HHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCcc
Q 005291 234 EDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMY 313 (704)
Q Consensus 234 ~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~ 313 (704)
.+. +..+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+++.
T Consensus 259 ~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~------------- 315 (367)
T 1hv8_A 259 RDI----------GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHL------------- 315 (367)
T ss_dssp HHT----------TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSC-------------
T ss_pred Hhc----------CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecC-------------
Confidence 875 678899999999999999999999999999999999999999999999998654
Q ss_pred ccccccccHHhHHhhccccCCC-CCceEEEecCCccccc
Q 005291 314 SLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (704)
Q Consensus 314 ~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~~ 351 (704)
|.|..++.||+|||||. .+|.|+.++++.++..
T Consensus 316 -----~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 349 (367)
T 1hv8_A 316 -----PQNPESYMHRIGRTGRAGKKGKAISIINRREYKK 349 (367)
T ss_dssp -----CSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHH
T ss_pred -----CCCHHHhhhcccccccCCCccEEEEEEcHHHHHH
Confidence 56889999999999999 5899999999877654
No 19
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3e-36 Score=330.85 Aligned_cols=311 Identities=17% Similarity=0.226 Sum_probs=227.0
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHh-cCC-CCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHR-HGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~-~~~-~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
.+++|.++++.+.+++++++.+|||||||......+.. ... ..+.+++++.|+++++.|+++.+..... ..+..++.
T Consensus 60 ~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~ 138 (410)
T 2j0s_A 60 PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGD-YMNVQCHA 138 (410)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT-TTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhc-cCCeEEEE
Confidence 57899999999999999999999999999544433333 221 2456899999999999999998866432 22222322
Q ss_pred eeeccc------ccCcccceEEcchHHHHHHHHhC-CCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEE
Q 005291 84 AIRFED------RTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (704)
Q Consensus 84 ~~~~~~------~~~~~~~I~~~T~g~Ll~~l~~~-~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~ 156 (704)
...... ......+|+++|++.+...+... ..+.++++||+||+|+ ..+.++. ..+..+....+++.+++++
T Consensus 139 ~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~-~~~~~~~-~~~~~i~~~~~~~~~~i~~ 216 (410)
T 2j0s_A 139 CIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE-MLNKGFK-EQIYDVYRYLPPATQVVLI 216 (410)
T ss_dssp ECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HTSTTTH-HHHHHHHTTSCTTCEEEEE
T ss_pred EECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH-HHhhhhH-HHHHHHHHhCccCceEEEE
Confidence 111111 11134689999999999888654 3678899999999994 4454443 3345555555558999999
Q ss_pred ecCCChHH---HhcccCCCCccccCCC---cCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHH
Q 005291 157 SATLDGEK---VSKFFSNCPTLNVPGK---LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLV 230 (704)
Q Consensus 157 SATl~~~~---~~~~~~~~~~i~i~~~---~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~ 230 (704)
|||++.+. +..++.++..+.+... ...+...+......++....+ ..+......+++||||+++++++.++
T Consensus 217 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l---~~~~~~~~~~~~lVf~~~~~~~~~l~ 293 (410)
T 2j0s_A 217 SATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL---CDLYDTLTITQAVIFCNTKRKVDWLT 293 (410)
T ss_dssp ESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHH---HHHHHHHTSSEEEEECSSHHHHHHHH
T ss_pred EcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHH---HHHHHhcCCCcEEEEEcCHHHHHHHH
Confidence 99997654 3345544433333322 122333333222233222223 33333334579999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCC
Q 005291 231 SKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSS 310 (704)
Q Consensus 231 ~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~ 310 (704)
+.|.+. ++.+..+||+++.++|.++++.|++|..+|||||+++++|+|+|++++||+++.
T Consensus 294 ~~L~~~----------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~---------- 353 (410)
T 2j0s_A 294 EKMREA----------NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDL---------- 353 (410)
T ss_dssp HHHHHT----------TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSC----------
T ss_pred HHHHhC----------CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECC----------
Confidence 999875 677899999999999999999999999999999999999999999999998553
Q ss_pred CccccccccccHHhHHhhccccCCC-CCceEEEecCCcccc
Q 005291 311 GMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (704)
Q Consensus 311 g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~ 350 (704)
|.|..+|.||+||+||. ++|.|+.++++.+..
T Consensus 354 --------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (410)
T 2j0s_A 354 --------PNNRELYIHRIGRSGRYGRKGVAINFVKNDDIR 386 (410)
T ss_dssp --------CSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHH
T ss_pred --------CCCHHHHHHhcccccCCCCceEEEEEecHHHHH
Confidence 56788999999999999 789999999887754
No 20
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=8.9e-37 Score=342.29 Aligned_cols=317 Identities=16% Similarity=0.155 Sum_probs=117.8
Q ss_pred chHHHHHHHHHhccC--CEEEEEcCCCCcHHHHHHHHHHh-cCC-CCCcEEEEcchhhHHHHHHHHHHHHHhCCccCcee
Q 005291 6 ILQYEETIVETVEQN--PVVVVIGETGSGKSTQLSQILHR-HGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (704)
Q Consensus 6 i~~~~~~il~~l~~~--~~vii~gpTGsGKTt~l~~~l~~-~~~-~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~v 81 (704)
.+++|.++++.+..+ +++++.||||||||......+.. ... ..+.++++++|+++|+.|+++.+.+......+..+
T Consensus 115 p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~ 194 (479)
T 3fmp_B 115 PSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKL 194 (479)
T ss_dssp CCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCE
T ss_pred CCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceE
Confidence 356699999999886 99999999999999554333333 222 22338999999999999999988776654333444
Q ss_pred eeeeecc---cccCcccceEEcchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEE
Q 005291 82 GYAIRFE---DRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (704)
Q Consensus 82 g~~~~~~---~~~~~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~ 156 (704)
++..... .......+|+|+|++.|++.+.... .+.++++|||||+|+ ..+.......+..+....+.+.++|++
T Consensus 195 ~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~-~~~~~~~~~~~~~i~~~~~~~~~~i~~ 273 (479)
T 3fmp_B 195 AYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV-MIATQGHQDQSIRIQRMLPRNCQMLLF 273 (479)
T ss_dssp EEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHH-HHTSTTHHHHHHHHHTTSCTTSEEEEE
T ss_pred EEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHH-HhhcCCcHHHHHHHHhhCCccceEEEE
Confidence 4433322 2223356899999999999886644 458999999999994 433222333344555555568999999
Q ss_pred ecCCChHH---HhcccCCCCccccCCCcCce---eEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHH
Q 005291 157 SATLDGEK---VSKFFSNCPTLNVPGKLYPV---EILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLV 230 (704)
Q Consensus 157 SATl~~~~---~~~~~~~~~~i~i~~~~~pv---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~ 230 (704)
|||++.+. ...++.++..+.+....... ...+..... .......+..+......+++||||+++..++.++
T Consensus 274 SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~ 350 (479)
T 3fmp_B 274 SATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS---RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLA 350 (479)
T ss_dssp ESCCCHHHHHHHHHHSSSEEEEEEC-------------------------------------------------------
T ss_pred eCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCC---HHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHH
Confidence 99998753 33455544444443321111 111111111 1122233333344445679999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCC
Q 005291 231 SKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSS 310 (704)
Q Consensus 231 ~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~ 310 (704)
+.|... +..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++++....
T Consensus 351 ~~L~~~----------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~----- 415 (479)
T 3fmp_B 351 AELSKE----------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD----- 415 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhC----------CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCc-----
Confidence 998765 67889999999999999999999999999999999999999999999999966533211
Q ss_pred CccccccccccHHhHHhhccccCCC-CCceEEEecCCcc
Q 005291 311 GMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (704)
Q Consensus 311 g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~ 348 (704)
.+.|..+|.||+|||||. .+|.|+.+++...
T Consensus 416 -------~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 416 -------GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp ---------------------------------------
T ss_pred -------cCCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 125778899999999998 6799999998654
No 21
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.5e-35 Score=322.86 Aligned_cols=311 Identities=17% Similarity=0.151 Sum_probs=226.8
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHHH-HHHHhcCC-CCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLS-QILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~-~~l~~~~~-~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
.+++|.++++.+.+++++++.+|||+|||.... +++..... ..+.+++++.|+++++.|+++.+.+......+..++.
T Consensus 31 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 110 (391)
T 1xti_A 31 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAV 110 (391)
T ss_dssp CCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEE
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 678999999999999999999999999995433 33333222 2345899999999999999998877654322223332
Q ss_pred eeecccc-------cCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEE
Q 005291 84 AIRFEDR-------TSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (704)
Q Consensus 84 ~~~~~~~-------~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~ 155 (704)
-...... .....+|+++|++.+...+.... .+.++++||+||||...-..++.. .+..+....+.+.++++
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~-~~~~~~~~~~~~~~~i~ 189 (391)
T 1xti_A 111 FFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRR-DVQEIFRMTPHEKQVMM 189 (391)
T ss_dssp ECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHH-HHHHHHHTSCSSSEEEE
T ss_pred EeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHH-HHHHHHhhCCCCceEEE
Confidence 1111110 11236899999999998886554 588999999999995332234433 35555565555899999
Q ss_pred EecCCChH---HHhcccCCCCccccCCC----cCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHH
Q 005291 156 TSATLDGE---KVSKFFSNCPTLNVPGK----LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEK 228 (704)
Q Consensus 156 ~SATl~~~---~~~~~~~~~~~i~i~~~----~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~ 228 (704)
||||++.. .+..++.++..+.+... ...+...+......+.. ..+..+......+++||||+++++++.
T Consensus 190 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~~~~~~~lvf~~~~~~~~~ 265 (391)
T 1xti_A 190 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKN----RKLFDLLDVLEFNQVVIFVKSVQRCIA 265 (391)
T ss_dssp EESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHH----HHHHHHHHHSCCSEEEEECSCHHHHHH
T ss_pred EEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHH----HHHHHHHHhcCCCcEEEEeCcHHHHHH
Confidence 99999654 24556655444433321 12233333332222222 222333333467899999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccC
Q 005291 229 LVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNP 308 (704)
Q Consensus 229 ~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~ 308 (704)
+++.|.+. ++.+..+||+++.++|.++++.|++|..+|||||+++++|+|+|++++||+.+.
T Consensus 266 l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~-------- 327 (391)
T 1xti_A 266 LAQLLVEQ----------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM-------- 327 (391)
T ss_dssp HHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSC--------
T ss_pred HHHHHHhC----------CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCC--------
Confidence 99999875 677899999999999999999999999999999999999999999999998554
Q ss_pred CCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccc
Q 005291 309 SSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (704)
Q Consensus 309 ~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~ 349 (704)
|.|..+|.||+|||||. .+|.|+.+++..+.
T Consensus 328 ----------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 328 ----------PEDSDTYLHRVARAGRFGTKGLAITFVSDEND 359 (391)
T ss_dssp ----------CSSHHHHHHHHCBCSSSCCCCEEEEEECSHHH
T ss_pred ----------CCCHHHHHHhcccccCCCCceEEEEEEcccch
Confidence 55889999999999998 68999999987643
No 22
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.7e-36 Score=345.42 Aligned_cols=299 Identities=17% Similarity=0.248 Sum_probs=221.6
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHH-HHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCcee
Q 005291 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (704)
Q Consensus 3 ~LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~-l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~v 81 (704)
.+||+++ . ++.+.++++++++||||||||+. +++++..... .+.++++++|+|+|+.|+++.+. +..+
T Consensus 172 ~lpiq~~--~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-~~~~vLvl~PtreLa~Qi~~~l~-------~~~v 240 (618)
T 2whx_A 172 GEPDYEV--D-EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-RRLRTLILAPTRVVAAEMEEALR-------GLPI 240 (618)
T ss_dssp CCCCCCC--C-GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT-------TSCE
T ss_pred CCCcccc--C-HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEcChHHHHHHHHHHhc-------CCce
Confidence 4888876 2 88899999999999999999954 4555544322 35689999999999999987764 3345
Q ss_pred eeeeec-ccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 82 GYAIRF-EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 82 g~~~~~-~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+|..+. +....+...+.++|.+.+.+.+..++.+.++++|||||||++....+.....+...+. + .+.++|+||||+
T Consensus 241 ~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~-~-~~~q~il~SAT~ 318 (618)
T 2whx_A 241 RYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE-M-GEAAAIFMTATP 318 (618)
T ss_dssp EECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-H-TSCEEEEECSSC
T ss_pred eEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhc-c-cCccEEEEECCC
Confidence 665543 3344566788899999999999988999999999999999653222323333333321 2 389999999999
Q ss_pred ChHHHhcccC-CCCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhh
Q 005291 161 DGEKVSKFFS-NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRS 239 (704)
Q Consensus 161 ~~~~~~~~~~-~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~ 239 (704)
+.. ...++. +...+.+... +.. ..+ ...+..+. +..+++||||+++++++.+++.|.+.
T Consensus 319 ~~~-~~~~~~~~~~~~~v~~~-------~~~---~~~-~~ll~~l~-----~~~~~~LVF~~s~~~a~~l~~~L~~~--- 378 (618)
T 2whx_A 319 PGS-TDPFPQSNSPIEDIERE-------IPE---RSW-NTGFDWIT-----DYQGKTVWFVPSIKAGNDIANCLRKS--- 378 (618)
T ss_dssp TTC-CCSSCCCSSCEEEEECC-------CCS---SCC-SSSCHHHH-----HCCSCEEEECSSHHHHHHHHHHHHHT---
T ss_pred chh-hhhhhccCCceeeeccc-------CCH---HHH-HHHHHHHH-----hCCCCEEEEECChhHHHHHHHHHHHc---
Confidence 755 333333 2222222221 111 111 01111111 13679999999999999999999875
Q ss_pred cCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccc--cCCCCcccccc
Q 005291 240 LDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY--NPSSGMYSLDV 317 (704)
Q Consensus 240 ~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~--~~~~g~~~l~~ 317 (704)
++.+..+||. +|.++++.|++|+.+|||||+++++|||+| |++|||+|+.+.+.+ +...++.....
T Consensus 379 -------g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d 446 (618)
T 2whx_A 379 -------GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGP 446 (618)
T ss_dssp -------TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEE
T ss_pred -------CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEccc
Confidence 6778999984 788899999999999999999999999998 999999999887765 44445556667
Q ss_pred ccccHHhHHhhccccCCCC--CceEEEecCC
Q 005291 318 VQISKVQANQRVGRAGRTR--PGKCYRLYPS 346 (704)
Q Consensus 318 ~~iS~~~~~QR~GRaGR~~--~G~c~~L~~~ 346 (704)
.|.|.++|+||+|||||.+ +|.||.++++
T Consensus 447 ~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~ 477 (618)
T 2whx_A 447 IPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 477 (618)
T ss_dssp EECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred ccCCHHHHHHhccccCCCCCCCCeEEEEccC
Confidence 8999999999999999994 8999999973
No 23
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.1e-36 Score=349.60 Aligned_cols=315 Identities=18% Similarity=0.172 Sum_probs=221.0
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccce
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I 97 (704)
.++++++++||||||||+.+.+.+.... ..++++|+|+||.|+++++.+ .|..++..+|.............++
T Consensus 153 l~rk~vlv~apTGSGKT~~al~~l~~~~-----~gl~l~PtR~LA~Qi~~~l~~-~g~~v~lltG~~~~iv~TpGr~~~i 226 (677)
T 3rc3_A 153 MQRKIIFHSGPTNSGKTYHAIQKYFSAK-----SGVYCGPLKLLAHEIFEKSNA-AGVPCDLVTGEERVTVQPNGKQASH 226 (677)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHSS-----SEEEEESSHHHHHHHHHHHHH-TTCCEEEECSSCEECCSTTCCCCSE
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC-----CeEEEeCHHHHHHHHHHHHHh-cCCcEEEEECCeeEEecCCCcccce
Confidence 4788999999999999997766666531 237779999999999999865 4666665555333322111223677
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCCh-HHHhcccCCCCccc
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG-EKVSKFFSNCPTLN 176 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~-~~~~~~~~~~~~i~ 176 (704)
+++|.+++ +....+++|||||+|+ ..+.++...+...+......+.+++++|||.+. ..+....+....+.
T Consensus 227 l~~T~e~~-------~l~~~v~lvVIDEaH~-l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~~v~ 298 (677)
T 3rc3_A 227 VSCTVEMC-------SVTTPYEVAVIDEIQM-IRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVR 298 (677)
T ss_dssp EEEEGGGC-------CSSSCEEEEEECSGGG-GGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCEEEE
T ss_pred eEecHhHh-------hhcccCCEEEEeccee-cCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCceEEE
Confidence 88887543 2467889999999995 466666666555555555358999999999632 11222222221111
Q ss_pred cCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCC
Q 005291 177 VPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGS 256 (704)
Q Consensus 177 i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~ 256 (704)
...+..+.... .... . .......| -+||++++++++.+++.|.+. ++.+.++||+
T Consensus 299 ~~~r~~~l~~~--~~~l-~-----------~l~~~~~g-~iIf~~s~~~ie~la~~L~~~----------g~~v~~lHG~ 353 (677)
T 3rc3_A 299 DYKRLTPISVL--DHAL-E-----------SLDNLRPG-DCIVCFSKNDIYSVSRQIEIR----------GLESAVIYGS 353 (677)
T ss_dssp ECCCSSCEEEC--SSCC-C-----------SGGGCCTT-EEEECSSHHHHHHHHHHHHHT----------TCCCEEECTT
T ss_pred EeeecchHHHH--HHHH-H-----------HHHhcCCC-CEEEEcCHHHHHHHHHHHHhc----------CCCeeeeecc
Confidence 11222222221 1110 0 00112334 478899999999999999874 6789999999
Q ss_pred CCHHHHhhccCCCCC--CCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCC
Q 005291 257 LPPEMQVRVFSPPPP--NCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGR 334 (704)
Q Consensus 257 l~~~~r~~v~~~~~~--g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR 334 (704)
|++++|.++++.|.+ |.++|||||+++++|||+ +|++||++|+.|. .||+..+. ...|+|.++|.||+|||||
T Consensus 354 L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~---~~~p~s~~~~~QR~GRAGR 428 (677)
T 3rc3_A 354 LPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER---ELEPITTSQALQIAGRAGR 428 (677)
T ss_dssp SCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC---------------CBCCHHHHHHHHTTBTC
T ss_pred CCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc---ccccCCHHHHHHHhcCCCC
Confidence 999999999999988 899999999999999999 8999999999998 88887443 2569999999999999999
Q ss_pred CC----CceEEEecCCc--cccccCCCCCCCccccCChHHHHHhhcccC
Q 005291 335 TR----PGKCYRLYPST--VYHDEFLDVTVPEIQRSSLAGSVLYLKSLD 377 (704)
Q Consensus 335 ~~----~G~c~~L~~~~--~~~~~~~~~~~pei~r~~l~~~~L~l~~l~ 377 (704)
.+ +|.||++++++ .+.. +.....|+|.+.++....++++.++
T Consensus 429 ~g~~g~~G~v~~l~~~d~~~~~~-~~~~~~~~i~~~~l~p~~~~l~~~~ 476 (677)
T 3rc3_A 429 FSSRFKEGEVTTMNHEDLSLLKE-ILKRPVDPIRAAGLHPTAEQIEMFA 476 (677)
T ss_dssp TTSSCSSEEEEESSTTHHHHHHH-HHHSCCCCCCCEEECCCHHHHHHHH
T ss_pred CCCCCCCEEEEEEecchHHHHHH-HHhcCcchhhhccCCChHHHHHHHh
Confidence 96 58999999887 5555 7788999999988777777777665
No 24
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.2e-35 Score=338.86 Aligned_cols=310 Identities=17% Similarity=0.138 Sum_probs=221.0
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHH--HHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKST--QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt--~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
.+++|.++++.+.+|+++++++|||+|||. ++|.+ . ..+.++|+.|+++|+.|+++.+.+. |..+....|.
T Consensus 45 ~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal-~-----~~g~~lVisP~~~L~~q~~~~l~~~-gi~~~~l~~~ 117 (591)
T 2v1x_A 45 FRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPAL-C-----SDGFTLVICPLISLMEDQLMVLKQL-GISATMLNAS 117 (591)
T ss_dssp CCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHH-T-----SSSEEEEECSCHHHHHHHHHHHHHH-TCCEEECCSS
T ss_pred CCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHH-H-----cCCcEEEEeCHHHHHHHHHHHHHhc-CCcEEEEeCC
Confidence 457899999999999999999999999994 44433 2 2468999999999999999998664 5554333331
Q ss_pred eeeccc--------ccCcccceEEcchHHHH------HHHHhCCCCCCCceEEEeCCCcCCCC-HHHHHH--HHHHHHHH
Q 005291 84 AIRFED--------RTSERTLIKYLTDGVLL------REILSNPDLSPYSVIILDEAHERSLN-TDILLG--LVKRLVNL 146 (704)
Q Consensus 84 ~~~~~~--------~~~~~~~I~~~T~g~Ll------~~l~~~~~l~~~~~IIiDEaHer~l~-~d~l~~--llk~l~~~ 146 (704)
....+. ......+|+|+||++|. +.+.....+.++++|||||||+.+-. .|+... .+..+...
T Consensus 118 ~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~ 197 (591)
T 2v1x_A 118 SSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ 197 (591)
T ss_dssp CCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHH
T ss_pred CCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHh
Confidence 111110 02356899999999774 22323234678999999999963311 122111 12234444
Q ss_pred hccCcEEEEEecCCChHH---HhcccCCCCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHcc-CCCCCEEEEeCC
Q 005291 147 RASKLKILITSATLDGEK---VSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVR-EPEGDVLIFMTG 222 (704)
Q Consensus 147 ~~~~~kiI~~SATl~~~~---~~~~~~~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~g~iLVFl~~ 222 (704)
.+ +.++|++|||++... +..+++......+........+.|............+..+...... ..++++||||++
T Consensus 198 ~~-~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~s 276 (591)
T 2v1x_A 198 FP-NASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFS 276 (591)
T ss_dssp CT-TSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSS
T ss_pred CC-CCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCc
Confidence 55 899999999998753 4556654322222222111222232111112223344445554432 356799999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccc
Q 005291 223 QDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVK 302 (704)
Q Consensus 223 ~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k 302 (704)
+++++.+++.|.+. ++.+.++||+|+.++|.++++.|..|+.+|||||+++++|||+|+|++||++++
T Consensus 277 r~~~e~la~~L~~~----------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~-- 344 (591)
T 2v1x_A 277 QKDSEQVTVSLQNL----------GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSM-- 344 (591)
T ss_dssp HHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSC--
T ss_pred HHHHHHHHHHHHHC----------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCC--
Confidence 99999999999875 788999999999999999999999999999999999999999999999999665
Q ss_pred cccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccccc
Q 005291 303 QRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (704)
Q Consensus 303 ~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~~ 351 (704)
|.|..+|+||+|||||. .+|.|+.+|+..+...
T Consensus 345 ----------------p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~ 378 (591)
T 2v1x_A 345 ----------------SKSMENYYQESGRAGRDDMKADCILYYGFGDIFR 378 (591)
T ss_dssp ----------------CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHH
T ss_pred ----------------CCCHHHHHHHhccCCcCCCCceEEEEEChHHHHH
Confidence 55889999999999999 6899999998776543
No 25
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=3.7e-36 Score=331.88 Aligned_cols=284 Identities=18% Similarity=0.249 Sum_probs=201.7
Q ss_pred cCCEEEEEcCCCCcHHHH-HHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeec-ccccCcccc
Q 005291 19 QNPVVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF-EDRTSERTL 96 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~-l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~-~~~~~~~~~ 96 (704)
+|++++++||||||||+. +++++... ...+.++++++|+++|+.|+++.+. + ..+++.... +....+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~-~~~g~~~lvl~Pt~~La~Q~~~~~~---~----~~v~~~~~~~~~~~~~~~~ 72 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREA-VKKRLRTVILAPTRVVASEMYEALR---G----EPIRYMTPAVQSERTGNEI 72 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHH-HHTTCCEEEEESSHHHHHHHHHHTT---T----SCEEEC---------CCCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH-HhCCCCEEEECcHHHHHHHHHHHhC---C----CeEEEEecCccccCCCCce
Confidence 478999999999999954 34444222 1245689999999999999887764 3 234443332 233344567
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhcccC-CCCcc
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS-NCPTL 175 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~~~-~~~~i 175 (704)
+.++|.+.+.+.+..++.+.++++|||||+|+.....+.....++.+.. . .+.++|+||||++.. +..+.. ..++.
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~-~-~~~~~l~~SAT~~~~-~~~~~~~~~~i~ 149 (431)
T 2v6i_A 73 VDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVS-M-GDAGAIFMTATPPGT-TEAFPPSNSPII 149 (431)
T ss_dssp EEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-T-TSCEEEEEESSCTTC-CCSSCCCSSCCE
T ss_pred EEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhh-C-CCCcEEEEeCCCCcc-hhhhcCCCCcee
Confidence 8889999999888888889999999999999643333344444544432 2 389999999999753 222211 12222
Q ss_pred ccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccC
Q 005291 176 NVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHG 255 (704)
Q Consensus 176 ~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~ 255 (704)
.+... + +...+ .. ++... .+..+++||||+++++++.+++.|.+. ++.+..+||
T Consensus 150 ~~~~~-------~---~~~~~-~~----~~~~l-~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~v~~lhg 203 (431)
T 2v6i_A 150 DEETR-------I---PDKAW-NS----GYEWI-TEFDGRTVWFVHSIKQGAEIGTCLQKA----------GKKVLYLNR 203 (431)
T ss_dssp EEECC-------C---CSSCC-SS----CCHHH-HSCSSCEEEECSSHHHHHHHHHHHHHT----------TCCEEEEST
T ss_pred ecccc-------C---CHHHH-HH----HHHHH-HcCCCCEEEEeCCHHHHHHHHHHHHHc----------CCeEEEeCC
Confidence 21111 1 11111 00 11111 123679999999999999999999875 677999999
Q ss_pred CCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC
Q 005291 256 SLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT 335 (704)
Q Consensus 256 ~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~ 335 (704)
+ +|.++++.|++|+.+|||||+++|+|||+| +.+|||+|..+.+.|| ..++......|.|.++|.||+||+||.
T Consensus 204 ~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~ 277 (431)
T 2v6i_A 204 K----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRN 277 (431)
T ss_dssp T----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred c----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccCCHHHHHHhhhccCCC
Confidence 7 577899999999999999999999999999 9999999999999998 666666777899999999999999999
Q ss_pred C-CceEEEecC
Q 005291 336 R-PGKCYRLYP 345 (704)
Q Consensus 336 ~-~G~c~~L~~ 345 (704)
+ .+.|+.+|.
T Consensus 278 g~~~~~~~~~~ 288 (431)
T 2v6i_A 278 PEKLGDIYAYS 288 (431)
T ss_dssp TTCCCCEEEEC
T ss_pred CCCCCeEEEEc
Confidence 5 344555554
No 26
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.4e-36 Score=328.25 Aligned_cols=312 Identities=18% Similarity=0.160 Sum_probs=219.9
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhcC-------------------CCCCcEEEEcchhhHHHHHH
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHG-------------------YTKSGIIGVTQPRRVAAVSV 65 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt-~l~~~l~~~~-------------------~~~~~~ilv~~P~r~la~~~ 65 (704)
.+++|.++++.+.+++++++++|||||||. ++.+++.... ...+.+++++.|+++++.|+
T Consensus 38 ~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 117 (417)
T 2i4i_A 38 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQI 117 (417)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHH
Confidence 568899999999999999999999999994 3333332211 01124799999999999999
Q ss_pred HHHHHHHhC---CccCceeeeeeecc--cccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHH
Q 005291 66 ARRVAQELG---VRLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGL 139 (704)
Q Consensus 66 a~rva~~~~---~~vg~~vg~~~~~~--~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~l 139 (704)
++++.+... ..++...|.....+ .....+.+|+|+|++.|.+.+.... .+.++++||+||||. ..+.++ ...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~-~~~~~~-~~~ 195 (417)
T 2i4i_A 118 YEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADR-MLDMGF-EPQ 195 (417)
T ss_dssp HHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHH-HHHTTC-HHH
T ss_pred HHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhH-hhccCc-HHH
Confidence 999876543 22222222110000 0112457899999999999886654 588999999999994 332222 233
Q ss_pred HHHHHHH--hc--cCcEEEEEecCCChHH---HhcccCCCCccccCC---CcCceeEEecCCCCcchHHHHHHHHHHHHc
Q 005291 140 VKRLVNL--RA--SKLKILITSATLDGEK---VSKFFSNCPTLNVPG---KLYPVEILHSKERPTSYLESALKTAIDIHV 209 (704)
Q Consensus 140 lk~l~~~--~~--~~~kiI~~SATl~~~~---~~~~~~~~~~i~i~~---~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~ 209 (704)
++.+... .+ ...++++||||++... +..++.+...+.+.. ....+...+......+. ...+.++..
T Consensus 196 ~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~l~~~l~ 271 (417)
T 2i4i_A 196 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK----RSFLLDLLN 271 (417)
T ss_dssp HHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGH----HHHHHHHHH
T ss_pred HHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhH----HHHHHHHHH
Confidence 4445442 11 2578999999997642 345555433333221 11122222222222222 222233332
Q ss_pred c-CCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEccccccccc
Q 005291 210 R-EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLT 288 (704)
Q Consensus 210 ~-~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gid 288 (704)
. ...+++||||+++++++.+++.|.+. ++.+..+||+++.++|.++++.|++|+.+|||||+++++|+|
T Consensus 272 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~----------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid 341 (417)
T 2i4i_A 272 ATGKDSLTLVFVETKKGADSLEDFLYHE----------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLD 341 (417)
T ss_dssp TCCTTCEEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSC
T ss_pred hcCCCCeEEEEECCHHHHHHHHHHHHHC----------CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCC
Confidence 2 35678999999999999999999875 678999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccccc
Q 005291 289 VDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (704)
Q Consensus 289 ip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~~ 351 (704)
+|++++||+++. |.|..+|.||+||+||. .+|.||.+|++.+...
T Consensus 342 ip~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 387 (417)
T 2i4i_A 342 ISNVKHVINFDL------------------PSDIEEYVHRIGRTGRVGNLGLATSFFNERNINI 387 (417)
T ss_dssp CCCEEEEEESSC------------------CSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGG
T ss_pred cccCCEEEEEcC------------------CCCHHHHHHhcCccccCCCCceEEEEEccccHHH
Confidence 999999999554 56889999999999999 6799999999877654
No 27
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-35 Score=350.86 Aligned_cols=325 Identities=15% Similarity=0.196 Sum_probs=235.0
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
++.+++|.++++.+.++++++|+||||||||+.....+.... ..+.+++++.|+++|+.|+++++.+.++ .+|...|
T Consensus 85 f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l-~~g~rvL~l~PtkaLa~Q~~~~l~~~~~-~vglltG- 161 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPIKALSNQKYRELLAEFG-DVGLMTG- 161 (1010)
T ss_dssp SCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHHS-CEEEECS-
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHh-ccCCeEEEECChHHHHHHHHHHHHHHhC-CEEEEeC-
Confidence 348899999999999999999999999999965433333221 2467999999999999999999998887 4333333
Q ss_pred eeecccccCcccceEEcchHHHHHHHHhC-CCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC-C
Q 005291 84 AIRFEDRTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL-D 161 (704)
Q Consensus 84 ~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~-~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl-~ 161 (704)
+.......+|+|+|+++|.+.+... ..+.++++|||||+| +..+..... .+..++...+.+.++|+||||+ +
T Consensus 162 ----d~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH-~l~d~~rg~-~~e~il~~l~~~~~il~LSATi~n 235 (1010)
T 2xgj_A 162 ----DITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGV-VWEETIILLPDKVRYVFLSATIPN 235 (1010)
T ss_dssp ----SCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGG-GGGCTTTHH-HHHHHHHHSCTTCEEEEEECCCTT
T ss_pred ----CCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechh-hhcccchhH-HHHHHHHhcCCCCeEEEEcCCCCC
Confidence 3333456789999999999888654 468899999999999 444432221 2344444455589999999999 4
Q ss_pred hHHHhcccC-----CCCccccCCCcCceeEEecCCC----------Ccc-----hH------------------------
Q 005291 162 GEKVSKFFS-----NCPTLNVPGKLYPVEILHSKER----------PTS-----YL------------------------ 197 (704)
Q Consensus 162 ~~~~~~~~~-----~~~~i~i~~~~~pv~~~~~~~~----------~~~-----~~------------------------ 197 (704)
...+.+|++ .+.++..+.+..|+..++.... ... +.
T Consensus 236 ~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~ 315 (1010)
T 2xgj_A 236 AMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKG 315 (1010)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-----------------
T ss_pred HHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccc
Confidence 556777764 3445556677777766543211 000 00
Q ss_pred ------------HHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhh------------------hcCCCC---
Q 005291 198 ------------ESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIR------------------SLDEGS--- 244 (704)
Q Consensus 198 ------------~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~------------------~~~~~~--- 244 (704)
...+..++........+++|||++++..++.+++.|..... .+....
T Consensus 316 ~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l 395 (1010)
T 2xgj_A 316 QTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDREL 395 (1010)
T ss_dssp -------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTC
T ss_pred cccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcc
Confidence 11122334434444556999999999999999988854100 000000
Q ss_pred --------CCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccc
Q 005291 245 --------CMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLD 316 (704)
Q Consensus 245 --------~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~ 316 (704)
.....|..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+. ...||...
T Consensus 396 ~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~~------ 465 (1010)
T 2xgj_A 396 PQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQQ------ 465 (1010)
T ss_dssp HHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----SEEECSSC------
T ss_pred hhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----CcccCCcC------
Confidence 001248899999999999999999999999999999999999999999999973 22354332
Q ss_pred cccccHHhHHhhccccCCCC---CceEEEecCCc
Q 005291 317 VVQISKVQANQRVGRAGRTR---PGKCYRLYPST 347 (704)
Q Consensus 317 ~~~iS~~~~~QR~GRaGR~~---~G~c~~L~~~~ 347 (704)
..|.|..+|.||+|||||.+ .|.||.++++.
T Consensus 466 ~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 466 FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 24789999999999999995 59999999865
No 28
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3.7e-36 Score=327.82 Aligned_cols=314 Identities=18% Similarity=0.244 Sum_probs=115.6
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHH-HHHHHHhcCC-CCCcEEEEcchhhHHHHHHHHHHHHHhC---CccCc
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELG---VRLGE 79 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKTt~-l~~~l~~~~~-~~~~~ilv~~P~r~la~~~a~rva~~~~---~~vg~ 79 (704)
..+++|.++++.+.+++++++.+|||+|||.. +.+++..... ..+.+++++.|+++++.|+++.+.+... ..++.
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 122 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHA 122 (394)
T ss_dssp SCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEE
Confidence 35789999999999999999999999999954 3333333222 2456899999999999999998876543 22222
Q ss_pred eeeeeeeccc-ccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEe
Q 005291 80 EVGYAIRFED-RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (704)
Q Consensus 80 ~vg~~~~~~~-~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~S 157 (704)
..|.....+. ......+|+++|++.+.+.+.... .+.++++||+||+|+ ..+.++. ..+..+....+++.++++||
T Consensus 123 ~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~-~~~~~~~-~~~~~~~~~~~~~~~~i~~S 200 (394)
T 1fuu_A 123 CIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE-MLSSGFK-EQIYQIFTLLPPTTQVVLLS 200 (394)
T ss_dssp ECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HHHTTCH-HHHHHHHHHSCTTCEEEEEC
T ss_pred EeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHH-hhCCCcH-HHHHHHHHhCCCCceEEEEE
Confidence 2221111010 111257899999999998886544 578899999999994 2222222 23445555555589999999
Q ss_pred cCCChHH---HhcccCCCCccccCCCcCc---eeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHH
Q 005291 158 ATLDGEK---VSKFFSNCPTLNVPGKLYP---VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVS 231 (704)
Q Consensus 158 ATl~~~~---~~~~~~~~~~i~i~~~~~p---v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~ 231 (704)
||++... +..++.++..+.+.....+ +...+......++. ...+..+......+++||||+++++++.+++
T Consensus 201 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~ 277 (394)
T 1fuu_A 201 ATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYK---YECLTDLYDSISVTQAVIFCNTRRKVEELTT 277 (394)
T ss_dssp SSCCHHHHHHHHHHCCSCEEEEECC-------------------------------------------------------
T ss_pred EecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhH---HHHHHHHHhcCCCCcEEEEECCHHHHHHHHH
Confidence 9997643 4455554433333322111 11112111111111 1222233333456799999999999999999
Q ss_pred HHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCC
Q 005291 232 KLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (704)
Q Consensus 232 ~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g 311 (704)
.|.+. ++.+..+||+++.++|.++++.|++|..+|||||+++++|+|+|++++||+++.
T Consensus 278 ~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~----------- 336 (394)
T 1fuu_A 278 KLRND----------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDL----------- 336 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHc----------CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCC-----------
Confidence 98764 677899999999999999999999999999999999999999999999998553
Q ss_pred ccccccccccHHhHHhhccccCCC-CCceEEEecCCccccc
Q 005291 312 MYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (704)
Q Consensus 312 ~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~~ 351 (704)
|.|..++.||+||+||. ++|.|+.++++++...
T Consensus 337 -------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 370 (394)
T 1fuu_A 337 -------PANKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 370 (394)
T ss_dssp -----------------------------------------
T ss_pred -------CCCHHHHHHHcCcccCCCCCceEEEEEchhHHHH
Confidence 56788899999999999 7899999999887654
No 29
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.4e-35 Score=344.59 Aligned_cols=319 Identities=16% Similarity=0.183 Sum_probs=180.4
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc----CCCCCcEEEEcchhhHHHHHHHHHHHHHh---CCcc
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH----GYTKSGIIGVTQPRRVAAVSVARRVAQEL---GVRL 77 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~----~~~~~~~ilv~~P~r~la~~~a~rva~~~---~~~v 77 (704)
..+++|.++++.+..|+++++++|||+|||++....+... ....+++++++.|+++++.|+++.+.+.. +..+
T Consensus 13 ~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v 92 (696)
T 2ykg_A 13 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRV 92 (696)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCE
T ss_pred CccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceE
Confidence 4689999999999999999999999999996544444322 11223689999999999999999887765 4444
Q ss_pred Cceeeeeeeccc--ccCcccceEEcchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHH-----hc
Q 005291 78 GEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNL-----RA 148 (704)
Q Consensus 78 g~~vg~~~~~~~--~~~~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~-----~~ 148 (704)
+...|....... ......+|+|+|+|+|.+.+.... .+.++++|||||||+..-+.. ...++...+.. .+
T Consensus 93 ~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~-~~~i~~~~l~~~~~~~~~ 171 (696)
T 2ykg_A 93 TGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHP-YNMIMFNYLDQKLGGSSG 171 (696)
T ss_dssp EEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCccc-HHHHHHHHHHHhhcccCC
Confidence 433331110000 011357999999999999987654 478899999999996443333 33333333322 12
Q ss_pred cCcEEEEEecCCC-------hHHHh---cccC--CCCccccCCC---------cCceeEEec------------------
Q 005291 149 SKLKILITSATLD-------GEKVS---KFFS--NCPTLNVPGK---------LYPVEILHS------------------ 189 (704)
Q Consensus 149 ~~~kiI~~SATl~-------~~~~~---~~~~--~~~~i~i~~~---------~~pv~~~~~------------------ 189 (704)
...++|+||||+. .+.+. .++. +..++..... ..|......
T Consensus 172 ~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~ 251 (696)
T 2ykg_A 172 PLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 251 (696)
T ss_dssp CCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHH
T ss_pred CCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHHH
Confidence 3789999999996 22211 1110 0000000000 000000000
Q ss_pred ----------C---------------------------------------------------------------------
Q 005291 190 ----------K--------------------------------------------------------------------- 190 (704)
Q Consensus 190 ----------~--------------------------------------------------------------------- 190 (704)
.
T Consensus 252 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~ 331 (696)
T 2ykg_A 252 DTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARM 331 (696)
T ss_dssp HHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhH
Confidence 0
Q ss_pred ---------------CCCcch-------------------------HHHHHHHHHHHH----ccCCCCCEEEEeCCHHHH
Q 005291 191 ---------------ERPTSY-------------------------LESALKTAIDIH----VREPEGDVLIFMTGQDDI 226 (704)
Q Consensus 191 ---------------~~~~~~-------------------------~~~~~~~~~~i~----~~~~~g~iLVFl~~~~~i 226 (704)
....+. ....+..+..+. ...+++++||||+++.++
T Consensus 332 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~ 411 (696)
T 2ykg_A 332 KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV 411 (696)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHH
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHH
Confidence 000000 001111222222 123567999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEec--------cCCCCHHHHhhccCCCCC-CCcEEEEEcccccccccCCCeEEEEe
Q 005291 227 EKLVSKLEDKIRSLDEGSCMDAVILPL--------HGSLPPEMQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVID 297 (704)
Q Consensus 227 ~~~~~~L~~~~~~~~~~~~~~~~v~~l--------h~~l~~~~r~~v~~~~~~-g~~kIlvaTniae~gidip~v~~VId 297 (704)
+.+++.|.+.-. ...+.+..+ ||+|+.++|.++++.|++ |.++|||||+++++|||+|++++||+
T Consensus 412 ~~l~~~L~~~~~------~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~ 485 (696)
T 2ykg_A 412 DALKNWIEGNPK------LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL 485 (696)
T ss_dssp HHHHHHHHHCTT------CCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEE
T ss_pred HHHHHHHHhCCC------ccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEE
Confidence 999999987510 012556666 669999999999999998 99999999999999999999999998
Q ss_pred CCccccccccCCCCccccccccccHHhHHhhccccCCCCCceEEEecCCccc
Q 005291 298 CGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVY 349 (704)
Q Consensus 298 ~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~~ 349 (704)
++. |.|..+|.||+|| ||.++|.||.|+++.+.
T Consensus 486 ~d~------------------p~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 486 YEY------------------VGNVIKMIQTRGR-GRARGSKCFLLTSNAGV 518 (696)
T ss_dssp ESC------------------C--CCCC----------CCCEEEEEESCHHH
T ss_pred eCC------------------CCCHHHHHHhhcc-CcCCCceEEEEecCCCH
Confidence 443 3455677899999 99999999999998776
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-35 Score=334.65 Aligned_cols=316 Identities=17% Similarity=0.211 Sum_probs=202.8
Q ss_pred chHHHHHHHHHhccC--CEEEEEcCCCCcHHHHHHH-HHHhcCCC-CCcEEEEcchhhHHHHHHHHHHHHHhCCc-cCce
Q 005291 6 ILQYEETIVETVEQN--PVVVVIGETGSGKSTQLSQ-ILHRHGYT-KSGIIGVTQPRRVAAVSVARRVAQELGVR-LGEE 80 (704)
Q Consensus 6 i~~~~~~il~~l~~~--~~vii~gpTGsGKTt~l~~-~l~~~~~~-~~~~ilv~~P~r~la~~~a~rva~~~~~~-vg~~ 80 (704)
.+++|.++++.+.++ +++++.+|||||||..... ++...... .+.+++++.|+++++.|+++++.+..+.. +...
T Consensus 142 p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~ 221 (508)
T 3fho_A 142 XXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTA 221 (508)
T ss_dssp CCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEE
T ss_pred cHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEE
Confidence 356778888888887 9999999999999955433 33333222 24589999999999999999997765432 2222
Q ss_pred eeeeeecccccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecC
Q 005291 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (704)
Q Consensus 81 vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SAT 159 (704)
.++............+|+++|++.+.+.+.... .+.++++||+||+|+..-+.. ....+..+....+.+.++|+||||
T Consensus 222 ~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~-~~~~~~~i~~~~~~~~~~i~lSAT 300 (508)
T 3fho_A 222 FGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQG-LGDQSMRIKHLLPRNTQIVLFSAT 300 (508)
T ss_dssp C----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC---CHHHHHHHHHHSCTTCEEEEEESC
T ss_pred EEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCC-cHHHHHHHHHhCCcCCeEEEEeCC
Confidence 222222222233467999999999998886554 588999999999995332233 333345555555558999999999
Q ss_pred CChH--H-HhcccCCCCccccCCCcCce---eEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHH
Q 005291 160 LDGE--K-VSKFFSNCPTLNVPGKLYPV---EILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKL 233 (704)
Q Consensus 160 l~~~--~-~~~~~~~~~~i~i~~~~~pv---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L 233 (704)
++.. . ...++.+...+.+.....+. ...+...... ......+..+......+++||||+++++++.+++.|
T Consensus 301 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L 377 (508)
T 3fho_A 301 FSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSE---EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRM 377 (508)
T ss_dssp CSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--C---HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHH
T ss_pred CCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCch---HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHH
Confidence 9743 2 33444454444444433222 1122211111 223334445555556789999999999999999988
Q ss_pred HHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCcc
Q 005291 234 EDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMY 313 (704)
Q Consensus 234 ~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~ 313 (704)
.+. +..+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+.+.+...
T Consensus 378 ~~~----------~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~--------- 438 (508)
T 3fho_A 378 TAD----------GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQ--------- 438 (508)
T ss_dssp TTT----------TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC----------
T ss_pred HhC----------CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcc---------
Confidence 653 6778899999999999999999999999999999999999999999999985542211
Q ss_pred ccccccccHHhHHhhccccCCC-CCceEEEecCCc
Q 005291 314 SLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (704)
Q Consensus 314 ~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~ 347 (704)
....|..++.||+|||||. .+|.|+.+++..
T Consensus 439 ---~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 439 ---AGRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp -------CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred ---cCCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 1125778899999999998 589999999754
No 31
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.7e-34 Score=319.19 Aligned_cols=289 Identities=20% Similarity=0.255 Sum_probs=198.5
Q ss_pred HhccCCEEEEEcCCCCcHHHH-HHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecc-cccCc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFE-DRTSE 93 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~-l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~-~~~~~ 93 (704)
.+.+|++++++||||||||+. +++++.... ..+.+++++.|+++|+.|+++.+. +. .+++....- ....+
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~-~~~~~~lil~Ptr~La~Q~~~~l~---~~----~v~~~~~~~~~v~Tp 75 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECA-RRRLRTLVLAPTRVVLSEMKEAFH---GL----DVKFHTQAFSAHGSG 75 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHTT---TS----CEEEESSCCCCCCCS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHH-hcCCeEEEEcchHHHHHHHHHHHh---cC----CeEEecccceeccCC
Confidence 467899999999999999954 344443222 235689999999999999998774 22 234433221 23334
Q ss_pred ccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhcccCCCC
Q 005291 94 RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCP 173 (704)
Q Consensus 94 ~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~~~~~~ 173 (704)
..-+.+++.+.+.+.+.....+.++++|||||+|+...+.+....++..+.. . .+.++++||||++... ..+...
T Consensus 76 ~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~-~~~~~l~~SAT~~~~~-~~~~~~-- 150 (440)
T 1yks_A 76 REVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-A-NESATILMTATPPGTS-DEFPHS-- 150 (440)
T ss_dssp SCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-T-TSCEEEEECSSCTTCC-CSSCCC--
T ss_pred ccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhc-c-CCceEEEEeCCCCchh-hhhhhc--
Confidence 4556677888888888877789999999999999642222234444444432 2 3799999999997542 222211
Q ss_pred ccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEec
Q 005291 174 TLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPL 253 (704)
Q Consensus 174 ~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~l 253 (704)
..++.......+.... ...+..+. +.++++||||+++++++.+++.|.+. ++.+..+
T Consensus 151 -------~~~~~~~~~~~~~~~~-~~~~~~l~-----~~~~~~lVF~~s~~~a~~l~~~L~~~----------~~~v~~l 207 (440)
T 1yks_A 151 -------NGEIEDVQTDIPSEPW-NTGHDWIL-----ADKRPTAWFLPSIRAANVMAASLRKA----------GKSVVVL 207 (440)
T ss_dssp -------SSCEEEEECCCCSSCC-SSSCHHHH-----HCCSCEEEECSCHHHHHHHHHHHHHT----------TCCEEEC
T ss_pred -------CCCeeEeeeccChHHH-HHHHHHHH-----hcCCCEEEEeCCHHHHHHHHHHHHHc----------CCCEEEe
Confidence 1111111111111100 00111111 13679999999999999999999875 6779999
Q ss_pred cCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccc-cCCCCccccccccccHHhHHhhcccc
Q 005291 254 HGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY-NPSSGMYSLDVVQISKVQANQRVGRA 332 (704)
Q Consensus 254 h~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~-~~~~g~~~l~~~~iS~~~~~QR~GRa 332 (704)
|| ++|.++++.|++|+.+|||||+++++|||+| +++|||+|+.+.+.| ++..++......|.|.++|.||+||+
T Consensus 208 hg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~ 282 (440)
T 1yks_A 208 NR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRI 282 (440)
T ss_dssp CS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTS
T ss_pred cc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhcccc
Confidence 99 5788999999999999999999999999999 999999999988877 45555665667799999999999999
Q ss_pred CCC--CCceEEEecC
Q 005291 333 GRT--RPGKCYRLYP 345 (704)
Q Consensus 333 GR~--~~G~c~~L~~ 345 (704)
||. .+|.||.+|+
T Consensus 283 GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 283 GRNPNRDGDSYYYSE 297 (440)
T ss_dssp SCCTTCCCEEEEECS
T ss_pred CCCCCCCceEEEEec
Confidence 996 5899999984
No 32
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.4e-34 Score=329.16 Aligned_cols=318 Identities=18% Similarity=0.196 Sum_probs=218.0
Q ss_pred chHHHHHHHHHhc--cCCEEEEEcCCCCcHHH-HHHHHHHhc---CC--CCCcEEEEcchhhHHHHHHHHHHHHHhCC--
Q 005291 6 ILQYEETIVETVE--QNPVVVVIGETGSGKST-QLSQILHRH---GY--TKSGIIGVTQPRRVAAVSVARRVAQELGV-- 75 (704)
Q Consensus 6 i~~~~~~il~~l~--~~~~vii~gpTGsGKTt-~l~~~l~~~---~~--~~~~~ilv~~P~r~la~~~a~rva~~~~~-- 75 (704)
.+++|.++++.+. .+++++++||||||||. ++.+++... .. ..+.+++++.|+++|+.|+++++....+.
T Consensus 95 ~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~ 174 (563)
T 3i5x_A 95 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNY 174 (563)
T ss_dssp CCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhcc
Confidence 6789999999988 67899999999999994 333333222 11 12348999999999999999998775321
Q ss_pred --ccCceeeeeeeccc-------ccCcccceEEcchHHHHHHHHhC--CCCCCCceEEEeCCCcCCCCHHH---HHHHHH
Q 005291 76 --RLGEEVGYAIRFED-------RTSERTLIKYLTDGVLLREILSN--PDLSPYSVIILDEAHERSLNTDI---LLGLVK 141 (704)
Q Consensus 76 --~vg~~vg~~~~~~~-------~~~~~~~I~~~T~g~Ll~~l~~~--~~l~~~~~IIiDEaHer~l~~d~---l~~llk 141 (704)
....... ...... ......+|+|+||+.|+..+... ..+.++++|||||||+ ..+.++ +..++.
T Consensus 175 ~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~-l~~~~f~~~~~~i~~ 252 (563)
T 3i5x_A 175 GLKKYACVS-LVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR-LLEIGFRDDLETISG 252 (563)
T ss_dssp GGTTSCEEE-ECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH-HTSTTTHHHHHHHHH
T ss_pred ccCceeEEE-EECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH-HhccchHHHHHHHHH
Confidence 1111111 111111 01235789999999999877543 3578899999999994 444332 222222
Q ss_pred HHHHHh---ccCcEEEEEecCCChHH--Hh-cccCCCCccccCC-------CcCceeEEec-CCCCcchHHHHHHHHHHH
Q 005291 142 RLVNLR---ASKLKILITSATLDGEK--VS-KFFSNCPTLNVPG-------KLYPVEILHS-KERPTSYLESALKTAIDI 207 (704)
Q Consensus 142 ~l~~~~---~~~~kiI~~SATl~~~~--~~-~~~~~~~~i~i~~-------~~~pv~~~~~-~~~~~~~~~~~~~~~~~i 207 (704)
.+.... ..+.++++||||++... +. .++.....+.+.. ....+...+. ...........+..+...
T Consensus 253 ~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (563)
T 3i5x_A 253 ILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQ 332 (563)
T ss_dssp HHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHH
T ss_pred hhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHH
Confidence 222211 23789999999997542 33 3333322222110 1111222111 111122333333434333
Q ss_pred H-ccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEccccccc
Q 005291 208 H-VREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETS 286 (704)
Q Consensus 208 ~-~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~g 286 (704)
. .....+++||||+++.+++.+++.|.+... .++.+..+||+|++++|.++++.|++|+.+|||||+++++|
T Consensus 333 ~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 405 (563)
T 3i5x_A 333 IKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARG 405 (563)
T ss_dssp HHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSS
T ss_pred HhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-------CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcC
Confidence 3 235678999999999999999999988642 26789999999999999999999999999999999999999
Q ss_pred ccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCcccc
Q 005291 287 LTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (704)
Q Consensus 287 idip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~ 350 (704)
||+|+|++||+.+. |.|..+|+||+|||||. .+|.|+.+++..+..
T Consensus 406 iDip~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~ 452 (563)
T 3i5x_A 406 MDFPNVHEVLQIGV------------------PSELANYIHRIGRTARSGKEGSSVLFICKDELP 452 (563)
T ss_dssp CCCTTCCEEEEESC------------------CSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHH
T ss_pred CCcccCCEEEEECC------------------CCchhhhhhhcCccccCCCCceEEEEEchhHHH
Confidence 99999999998554 45778899999999999 589999999876543
No 33
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.2e-34 Score=308.81 Aligned_cols=297 Identities=21% Similarity=0.243 Sum_probs=216.2
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhC---CccCcee
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG---VRLGEEV 81 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~---~~vg~~v 81 (704)
..+++|.++++.+.+++++++.+|||+|||......+... +.+++++.|+++++.|+++++.+... ..++...
T Consensus 16 ~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 91 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVY 91 (337)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEEC
T ss_pred CCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEE
Confidence 4689999999999999999999999999996554444442 56789999999999999999876542 2222222
Q ss_pred eeeeecc-cccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecC
Q 005291 82 GYAIRFE-DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (704)
Q Consensus 82 g~~~~~~-~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SAT 159 (704)
|.....+ .......+|+++|++.|.+.+.... .+.++++||+||||. ..+.. ....+..++...+...++++||||
T Consensus 92 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~-~~~~~-~~~~~~~~~~~~~~~~~~~~~SAT 169 (337)
T 2z0m_A 92 GGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADL-MFEMG-FIDDIKIILAQTSNRKITGLFSAT 169 (337)
T ss_dssp TTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHH-HHHTT-CHHHHHHHHHHCTTCSEEEEEESC
T ss_pred CCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHH-hhccc-cHHHHHHHHhhCCcccEEEEEeCc
Confidence 2110000 0111347899999999998876544 578899999999994 22222 223345555555557889999999
Q ss_pred CChHH---HhcccCCCCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHH
Q 005291 160 LDGEK---VSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDK 236 (704)
Q Consensus 160 l~~~~---~~~~~~~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~ 236 (704)
++... +..++.+...+........+...+..... ++. . .+........+++|||++++++++.+++.|.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~----~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~-- 241 (337)
T 2z0m_A 170 IPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKD-DWR-S----KVQALRENKDKGVIVFVRTRNRVAKLVRLFD-- 241 (337)
T ss_dssp CCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSS-SSH-H----HHHHHHTCCCSSEEEECSCHHHHHHHHTTCT--
T ss_pred CCHHHHHHHHHhcCCceeeecccccCCceEEEEEeCh-HHH-H----HHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh--
Confidence 97653 56666654444333222333333332221 111 1 1233344667899999999999998877653
Q ss_pred hhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccc
Q 005291 237 IRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLD 316 (704)
Q Consensus 237 ~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~ 316 (704)
.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+.+.
T Consensus 242 ------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~---------------- 293 (337)
T 2z0m_A 242 ------------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDA---------------- 293 (337)
T ss_dssp ------------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSC----------------
T ss_pred ------------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecC----------------
Confidence 2567999999999999999999999999999999999999999999998553
Q ss_pred cccccHHhHHhhccccCCC-CCceEEEecC
Q 005291 317 VVQISKVQANQRVGRAGRT-RPGKCYRLYP 345 (704)
Q Consensus 317 ~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~ 345 (704)
|.|..++.||+|||||. .+|.|+.++.
T Consensus 294 --~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 294 --PQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp --CSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred --CCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 55888999999999999 7899999998
No 34
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.8e-34 Score=328.23 Aligned_cols=317 Identities=18% Similarity=0.194 Sum_probs=218.2
Q ss_pred chHHHHHHHHHhc--cCCEEEEEcCCCCcHHH-HHHHHHHhc---CC--CCCcEEEEcchhhHHHHHHHHHHHHHhC---
Q 005291 6 ILQYEETIVETVE--QNPVVVVIGETGSGKST-QLSQILHRH---GY--TKSGIIGVTQPRRVAAVSVARRVAQELG--- 74 (704)
Q Consensus 6 i~~~~~~il~~l~--~~~~vii~gpTGsGKTt-~l~~~l~~~---~~--~~~~~ilv~~P~r~la~~~a~rva~~~~--- 74 (704)
.+++|.++++.+. .++++++.+|||||||. ++.+++... .. ..+.+++++.|+++|+.|+++.+.+...
T Consensus 44 ~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~ 123 (579)
T 3sqw_A 44 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNY 123 (579)
T ss_dssp CCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcc
Confidence 5789999999988 78899999999999994 333333222 11 1234899999999999999999877542
Q ss_pred -CccCceeeeeeeccc-------ccCcccceEEcchHHHHHHHHhC--CCCCCCceEEEeCCCcCCCCHHH---HHHHHH
Q 005291 75 -VRLGEEVGYAIRFED-------RTSERTLIKYLTDGVLLREILSN--PDLSPYSVIILDEAHERSLNTDI---LLGLVK 141 (704)
Q Consensus 75 -~~vg~~vg~~~~~~~-------~~~~~~~I~~~T~g~Ll~~l~~~--~~l~~~~~IIiDEaHer~l~~d~---l~~llk 141 (704)
........ ...... ......+|+|+||+.|+..+... ..+.++++|||||||+ ..+..+ +..++.
T Consensus 124 ~~~~~~~~~-~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~-l~~~gf~~~~~~i~~ 201 (579)
T 3sqw_A 124 GLKKYACVS-LVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR-LLEIGFRDDLETISG 201 (579)
T ss_dssp GGTTSCEEE-ECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH-HTSTTTHHHHHHHHH
T ss_pred cccceEEEE-EECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH-hhcCCCHHHHHHHHH
Confidence 22111111 111111 01235789999999999877543 3678899999999994 444333 222222
Q ss_pred HHHHHh---ccCcEEEEEecCCChHH---HhcccCCCCccccCC-------CcCceeEEecC-CCCcchHHHHHHHHHHH
Q 005291 142 RLVNLR---ASKLKILITSATLDGEK---VSKFFSNCPTLNVPG-------KLYPVEILHSK-ERPTSYLESALKTAIDI 207 (704)
Q Consensus 142 ~l~~~~---~~~~kiI~~SATl~~~~---~~~~~~~~~~i~i~~-------~~~pv~~~~~~-~~~~~~~~~~~~~~~~i 207 (704)
.+.... +.+.++++||||++... +..++.....+.+.. ....+...+.. ..........+..+...
T Consensus 202 ~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 281 (579)
T 3sqw_A 202 ILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQ 281 (579)
T ss_dssp HHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHH
T ss_pred HhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHH
Confidence 222221 12679999999997642 233443322222111 11112222211 11122333333444333
Q ss_pred Hc-cCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEccccccc
Q 005291 208 HV-REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETS 286 (704)
Q Consensus 208 ~~-~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~g 286 (704)
.. ....+++||||+++.+++.+++.|.+... .++.+..+||+|+.++|.++++.|++|+.+|||||+++++|
T Consensus 282 ~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-------~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~G 354 (579)
T 3sqw_A 282 IKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARG 354 (579)
T ss_dssp HHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSS
T ss_pred HhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc-------CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcC
Confidence 32 35577999999999999999999988642 26789999999999999999999999999999999999999
Q ss_pred ccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccc
Q 005291 287 LTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (704)
Q Consensus 287 idip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~ 349 (704)
||+|+|++||+.+. |.|..+|+||+|||||. .+|.|+.++++.+.
T Consensus 355 iDip~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 400 (579)
T 3sqw_A 355 MDFPNVHEVLQIGV------------------PSELANYIHRIGRTARSGKEGSSVLFICKDEL 400 (579)
T ss_dssp CCCTTCCEEEEESC------------------CSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred CCcccCCEEEEcCC------------------CCCHHHhhhhccccccCCCCceEEEEEcccHH
Confidence 99999999998554 45778899999999999 58999999987654
No 35
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.7e-33 Score=320.95 Aligned_cols=330 Identities=15% Similarity=0.180 Sum_probs=172.0
Q ss_pred CCCCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHH-HHHHhcCCCC---CcEEEEcchhhHHHHHHHHHHHHHh---
Q 005291 1 MANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLS-QILHRHGYTK---SGIIGVTQPRRVAAVSVARRVAQEL--- 73 (704)
Q Consensus 1 m~~LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~-~~l~~~~~~~---~~~ilv~~P~r~la~~~a~rva~~~--- 73 (704)
|..+..+++|.++++.+..++++++.+|||||||.... +++....... +.+++++.|+++++.|+++.+.+.+
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 82 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 45677899999999999999999999999999994332 2322222212 6689999999999999999887664
Q ss_pred CCccCceeeeeeeccc--ccCcccceEEcchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh--
Q 005291 74 GVRLGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-- 147 (704)
Q Consensus 74 ~~~vg~~vg~~~~~~~--~~~~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~-- 147 (704)
+..++...|....... ......+|+|+|++.|.+.+.... .+.++++||+||||. ..+......++..+....
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~-~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHN-TTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGG-CSTTSHHHHHHHHHHHHHHC
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcc-cCCcchHHHHHHHHHHhhhc
Confidence 4555444442211111 112357899999999999886654 588999999999995 444444444444444331
Q ss_pred --ccCcEEEEEecCCChH---HHh----------cccCCCCccccCCC---------cCceeE--EecCCCCcc------
Q 005291 148 --ASKLKILITSATLDGE---KVS----------KFFSNCPTLNVPGK---------LYPVEI--LHSKERPTS------ 195 (704)
Q Consensus 148 --~~~~kiI~~SATl~~~---~~~----------~~~~~~~~i~i~~~---------~~pv~~--~~~~~~~~~------ 195 (704)
.+..++++||||+... .+. ..++. ..+..... ..|... .+.......
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDI-QAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 240 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTC-SEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCC-eEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHH
Confidence 2368999999999421 111 12211 11111000 001100 000000000
Q ss_pred ----------------------------------hH--------------------------------------------
Q 005291 196 ----------------------------------YL-------------------------------------------- 197 (704)
Q Consensus 196 ----------------------------------~~-------------------------------------------- 197 (704)
++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (556)
T 4a2p_A 241 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 320 (556)
T ss_dssp HHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 00
Q ss_pred --------------------------------------------------HHHHHHHHHH----HccCCCCCEEEEeCCH
Q 005291 198 --------------------------------------------------ESALKTAIDI----HVREPEGDVLIFMTGQ 223 (704)
Q Consensus 198 --------------------------------------------------~~~~~~~~~i----~~~~~~g~iLVFl~~~ 223 (704)
...+..+..+ .....++++|||++++
T Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~ 400 (556)
T 4a2p_A 321 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 400 (556)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccH
Confidence 0011111111 1125678999999999
Q ss_pred HHHHHHHHHHHHHhh--hcCCCCCCCeEEEeccCCCCHHHHhhccCCCCC-CCcEEEEEcccccccccCCCeEEEEeCCc
Q 005291 224 DDIEKLVSKLEDKIR--SLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (704)
Q Consensus 224 ~~i~~~~~~L~~~~~--~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~-g~~kIlvaTniae~gidip~v~~VId~g~ 300 (704)
..++.+++.|.+... ........+.....+||+|+.++|.++++.|++ |..+|||||+++++|||+|++++||+++.
T Consensus 401 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 401 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 480 (556)
T ss_dssp HHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETC
T ss_pred HHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCC
Confidence 999999999975410 011111124455667899999999999999999 99999999999999999999999998442
Q ss_pred cccccccCCCCccccccccccHHhHHhhccccCCCCCceEEEecCCccccc
Q 005291 301 VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (704)
Q Consensus 301 ~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~~~~ 351 (704)
|.|..+|.||+|| ||.++|.||.|+++.+.+.
T Consensus 481 ------------------p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 481 ------------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVVE 512 (556)
T ss_dssp ------------------CSCHHHHHHC---------CCEEEEESCHHHHH
T ss_pred ------------------CCCHHHHHHhcCC-CCCCCceEEEEEeCcchHH
Confidence 5688899999999 9999999999999877643
No 36
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=4.2e-34 Score=322.76 Aligned_cols=304 Identities=18% Similarity=0.200 Sum_probs=216.5
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHH--HHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKST--QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt--~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
.+++|.++++.+.+|+++++++|||+|||. ++|.+.. .+.++++.|+++|+.++.+++.. ++..+....|.
T Consensus 26 ~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~aL~~q~~~~l~~-~gi~~~~l~~~ 98 (523)
T 1oyw_A 26 FRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLISLMKDQVDQLQA-NGVAAACLNST 98 (523)
T ss_dssp CCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCHHHHHHHHHHHHH-TTCCEEEECTT
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChHHHHHHHHHHHHH-cCCcEEEEeCC
Confidence 367899999999999999999999999994 4554322 46789999999999999998864 45443222221
Q ss_pred eeec------ccccCcccceEEcchHHHHHHH-HhCCCCCCCceEEEeCCCcCCCC-HHH--HHHHHHHHHHHhccCcEE
Q 005291 84 AIRF------EDRTSERTLIKYLTDGVLLREI-LSNPDLSPYSVIILDEAHERSLN-TDI--LLGLVKRLVNLRASKLKI 153 (704)
Q Consensus 84 ~~~~------~~~~~~~~~I~~~T~g~Ll~~l-~~~~~l~~~~~IIiDEaHer~l~-~d~--l~~llk~l~~~~~~~~ki 153 (704)
.... ........+|+|+||+.|.... .......++++|||||||+.+-. .++ ....+..+....+ +.++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~ 177 (523)
T 1oyw_A 99 QTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-TLPF 177 (523)
T ss_dssp SCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCT-TSCE
T ss_pred CCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCC-CCCE
Confidence 1000 0111234789999999985321 11113478999999999964321 112 2223445555565 7999
Q ss_pred EEEecCCChHH---HhcccC-CCCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHH
Q 005291 154 LITSATLDGEK---VSKFFS-NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (704)
Q Consensus 154 I~~SATl~~~~---~~~~~~-~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~ 229 (704)
+++|||++... +.++++ ..+.+.+.+...| .+.|......+... .++.......++++||||+++++++.+
T Consensus 178 i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-~l~~~v~~~~~~~~----~l~~~l~~~~~~~~IVf~~sr~~~e~l 252 (523)
T 1oyw_A 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYMLMEKFKPLD----QLMRYVQEQRGKSGIIYCNSRAKVEDT 252 (523)
T ss_dssp EEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCT-TEEEEEEECSSHHH----HHHHHHHHTTTCCEEEECSSHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCC-ceEEEEEeCCCHHH----HHHHHHHhcCCCcEEEEeCCHHHHHHH
Confidence 99999998754 444443 2333333332222 12222111222222 233333334667999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCC
Q 005291 230 VSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPS 309 (704)
Q Consensus 230 ~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~ 309 (704)
++.|.+. ++.+.++||+|+.++|.++++.|.+|+.+|||||+++++|||+|+|++||+.+.
T Consensus 253 ~~~L~~~----------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~--------- 313 (523)
T 1oyw_A 253 AARLQSK----------GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI--------- 313 (523)
T ss_dssp HHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSC---------
T ss_pred HHHHHHC----------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECC---------
Confidence 9999875 678999999999999999999999999999999999999999999999999664
Q ss_pred CCccccccccccHHhHHhhccccCCC-CCceEEEecCCcccc
Q 005291 310 SGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (704)
Q Consensus 310 ~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~ 350 (704)
|.|..+|.||+|||||. .+|.|+.+|+.++..
T Consensus 314 ---------p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~ 346 (523)
T 1oyw_A 314 ---------PRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (523)
T ss_dssp ---------CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHH
T ss_pred ---------CCCHHHHHHHhccccCCCCCceEEEEeCHHHHH
Confidence 56889999999999999 589999999877654
No 37
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.8e-33 Score=309.44 Aligned_cols=296 Identities=12% Similarity=0.100 Sum_probs=202.8
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceee
Q 005291 4 LPILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt-~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg 82 (704)
...+++|.++++.+.+++++++++|||||||. .+++++... ..+.+++++.|+++|+.|+++++.+... .+..++
T Consensus 20 ~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~v~ 95 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLAD--EKVKIF 95 (414)
T ss_dssp SCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHHHCC--SSCCEE
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHHHHHHcc--CCceEE
Confidence 34679999999999999999999999999995 333333322 3467899999999999999999977533 233333
Q ss_pred eeeecccc----------cCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcC---------CCC-HHHHHHHHHH
Q 005291 83 YAIRFEDR----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHER---------SLN-TDILLGLVKR 142 (704)
Q Consensus 83 ~~~~~~~~----------~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer---------~l~-~d~l~~llk~ 142 (704)
.-...... .....+|+|+||+.+.+.+.. ..+.++++||+||||.. .++ .++....+..
T Consensus 96 ~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~ 174 (414)
T 3oiy_A 96 GFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRK 174 (414)
T ss_dssp ECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHH
T ss_pred EEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHH
Confidence 21111111 112379999999999876643 45678999999999941 111 1222222444
Q ss_pred HHHHhc-----------cCcEEEEEecCCChHH-----HhcccCCCCccccCCCcCceeEEecCCCCcchHHHHHHHHHH
Q 005291 143 LVNLRA-----------SKLKILITSATLDGEK-----VSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAID 206 (704)
Q Consensus 143 l~~~~~-----------~~~kiI~~SATl~~~~-----~~~~~~~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~ 206 (704)
++...+ .+.+++++|||+.+.. +..++. ..+.........+...+......+.+ ..++.
T Consensus 175 i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l----~~~l~ 249 (414)
T 3oiy_A 175 AFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRISSRSKEKL----VELLE 249 (414)
T ss_dssp HHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS-CCSSCCCCCCCSEEEEEESSCCHHHH----HHHHH
T ss_pred HHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc-cCcCccccccccchheeeccCHHHHH----HHHHH
Confidence 444433 4899999999953322 222322 11111111222334444333222222 11222
Q ss_pred HHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEE-eccCCCCHHHHhhccCCCCCCCcEEEEE----cc
Q 005291 207 IHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVIL-PLHGSLPPEMQVRVFSPPPPNCRRFIVS----TN 281 (704)
Q Consensus 207 i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~-~lh~~l~~~~r~~v~~~~~~g~~kIlva----Tn 281 (704)
. .++++||||+++.+++.+++.|.+. ++.+. .+||. +|. ++.|++|+.+|||| |+
T Consensus 250 ~----~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~ 309 (414)
T 3oiy_A 250 I----FRDGILIFAQTEEEGKELYEYLKRF----------KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYG 309 (414)
T ss_dssp H----HCSSEEEEESSHHHHHHHHHHHHHT----------TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTC
T ss_pred H----cCCCEEEEECCHHHHHHHHHHHHHc----------CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCc
Confidence 1 2479999999999999999999875 67777 89984 333 89999999999999 99
Q ss_pred cccccccCCC-eEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCC-----CceEEEecC
Q 005291 282 IAETSLTVDG-VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR-----PGKCYRLYP 345 (704)
Q Consensus 282 iae~gidip~-v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~-----~G~c~~L~~ 345 (704)
++++|+|+|+ |++||++|.++ ..|..+|.||+|||||.+ +|.||.++.
T Consensus 310 ~~~~GiDip~~v~~VI~~~~p~----------------~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~ 363 (414)
T 3oiy_A 310 KLTRGVDLPERIKYVIFWGTPS----------------GPDVYTYIQASGRSSRILNGVLVKGVSVIFEE 363 (414)
T ss_dssp CCCCCCCCTTTCCEEEEESCCT----------------TTCHHHHHHHHGGGCCEETTEECCEEEEEECC
T ss_pred hhhccCccccccCEEEEECCCC----------------CCCHHHHHHHhCccccCCCCCCcceEEEEEEc
Confidence 9999999999 99999966521 068899999999999974 799999993
No 38
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.1e-33 Score=320.03 Aligned_cols=327 Identities=16% Similarity=0.191 Sum_probs=193.1
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHH-HHHHhcCCCC---CcEEEEcchhhHHHHHHHHHHHHHh---CC
Q 005291 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLS-QILHRHGYTK---SGIIGVTQPRRVAAVSVARRVAQEL---GV 75 (704)
Q Consensus 3 ~LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~-~~l~~~~~~~---~~~ilv~~P~r~la~~~a~rva~~~---~~ 75 (704)
.+..+++|.++++.+.+++++++.+|||||||.... +++....... +++++++.|+++++.|+++.+.+.+ +.
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 467889999999999999999999999999994433 3322222212 6689999999999999999887665 44
Q ss_pred ccCceeeeeeeccc--ccCcccceEEcchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh----
Q 005291 76 RLGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR---- 147 (704)
Q Consensus 76 ~vg~~vg~~~~~~~--~~~~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~---- 147 (704)
.++...|....... ......+|+|+|++.|.+.+.... .+.++++|||||||. ..+......++...+...
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~-~~~~~~~~~~~~~~~~~~~~~~ 160 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHN-TSKNHPYNQIMFRYLDHKLGES 160 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGG-CSTTCHHHHHHHHHHHHHTSSC
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccc-cCCcchHHHHHHHHHHhhhccc
Confidence 44444442211111 111357899999999999886654 578899999999995 444333444444444332
Q ss_pred -ccCcEEEEEecCCChH----------HH---hcccCCCCccccCC---------CcCceeEE-ecCC-CCcc-------
Q 005291 148 -ASKLKILITSATLDGE----------KV---SKFFSNCPTLNVPG---------KLYPVEIL-HSKE-RPTS------- 195 (704)
Q Consensus 148 -~~~~kiI~~SATl~~~----------~~---~~~~~~~~~i~i~~---------~~~pv~~~-~~~~-~~~~------- 195 (704)
.++.++++||||+... .+ ...++ ...+.... ...|.... .... ....
T Consensus 161 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
T 3tbk_A 161 RDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALD-ASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQ 239 (555)
T ss_dssp CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTT-CSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred cCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcC-CeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHH
Confidence 1368999999999431 11 12221 11111110 00011000 0000 0000
Q ss_pred ----------------------------------hH--------------------------------------------
Q 005291 196 ----------------------------------YL-------------------------------------------- 197 (704)
Q Consensus 196 ----------------------------------~~-------------------------------------------- 197 (704)
++
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 319 (555)
T 3tbk_A 240 LMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISED 319 (555)
T ss_dssp HHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 00
Q ss_pred --------------------------------------------------HHHHHHHH----HHHccCCCCCEEEEeCCH
Q 005291 198 --------------------------------------------------ESALKTAI----DIHVREPEGDVLIFMTGQ 223 (704)
Q Consensus 198 --------------------------------------------------~~~~~~~~----~i~~~~~~g~iLVFl~~~ 223 (704)
...+..+. ......+.+++|||++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~ 399 (555)
T 3tbk_A 320 AQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTR 399 (555)
T ss_dssp SCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSH
T ss_pred hhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcH
Confidence 00011111 112224568999999999
Q ss_pred HHHHHHHHHHHHHhhh--cCCCCCCCeEEEeccCCCCHHHHhhccCCCCC-CCcEEEEEcccccccccCCCeEEEEeCCc
Q 005291 224 DDIEKLVSKLEDKIRS--LDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (704)
Q Consensus 224 ~~i~~~~~~L~~~~~~--~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~-g~~kIlvaTniae~gidip~v~~VId~g~ 300 (704)
..++.+++.|.+.... .......+.....+||+|+.++|.++++.|++ |..+|||||+++++|||+|++++||+++.
T Consensus 400 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~ 479 (555)
T 3tbk_A 400 ALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEY 479 (555)
T ss_dssp HHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESC
T ss_pred HHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCC
Confidence 9999999999875210 00001123455667889999999999999999 99999999999999999999999998443
Q ss_pred cccccccCCCCccccccccccHHhHHhhccccCCCCCceEEEecCCcccc
Q 005291 301 VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYH 350 (704)
Q Consensus 301 ~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~~~ 350 (704)
|.|..+|.||+|| ||..+|.||.|+++.+..
T Consensus 480 ------------------p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 480 ------------------VGNVIKMIQTRGR-GRARDSKCFLLTSSADVI 510 (555)
T ss_dssp ------------------CSSCCCEECSSCC-CTTTSCEEEEEESCHHHH
T ss_pred ------------------CCCHHHHHHhcCc-CcCCCceEEEEEcCCCHH
Confidence 3355566799999 999999999999887664
No 39
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=3.4e-33 Score=321.75 Aligned_cols=287 Identities=20% Similarity=0.258 Sum_probs=207.5
Q ss_pred ccCCEEEEEcCCCCcHHHH-HHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeec-ccccCccc
Q 005291 18 EQNPVVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF-EDRTSERT 95 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~-l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~-~~~~~~~~ 95 (704)
.++++++++||||||||+. +++++.... ..+.++++++|+++|+.|+++.+.. . .+++.... .....+..
T Consensus 239 ~~g~dvlv~apTGSGKTl~~ll~il~~l~-~~~~~~lilaPTr~La~Q~~~~l~~---~----~i~~~~~~l~~v~tp~~ 310 (673)
T 2wv9_A 239 KKRQLTVLDLHPGAGKTRRILPQIIKDAI-QKRLRTAVLAPTRVVAAEMAEALRG---L----PVRYLTPAVQREHSGNE 310 (673)
T ss_dssp STTCEEEECCCTTTTTTTTHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHTTT---S----CCEECCC---CCCCSCC
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHH-hCCCcEEEEccHHHHHHHHHHHHhc---C----CeeeecccccccCCHHH
Confidence 3899999999999999954 454543322 2456899999999999999987742 1 23333221 12334456
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhcccCCCCcc
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTL 175 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~~~~~~~i 175 (704)
.+.+++.+.+.+.++.+..+.++++|||||+|+.....+.....++.+... .+.++|+||||++.. +..+..
T Consensus 311 ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~~--~~~~vl~~SAT~~~~-i~~~~~----- 382 (673)
T 2wv9_A 311 IVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEA--GEAAAIFMTATPPGT-SDPFPD----- 382 (673)
T ss_dssp CEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHHT--TSCEEEEECSSCTTC-CCSSCC-----
T ss_pred HHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhccc--cCCcEEEEcCCCChh-hhhhcc-----
Confidence 677889999988888888899999999999996533334455555554421 379999999999754 222221
Q ss_pred ccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccC
Q 005291 176 NVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHG 255 (704)
Q Consensus 176 ~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~ 255 (704)
...|+............ ...+..+ ....+++||||+++++++.+++.|.+. ++.+..+||
T Consensus 383 ----~~~~i~~v~~~~~~~~~-~~~l~~l-----~~~~~~~lVF~~s~~~~e~la~~L~~~----------g~~v~~lHg 442 (673)
T 2wv9_A 383 ----TNSPVHDVSSEIPDRAW-SSGFEWI-----TDYAGKTVWFVASVKMSNEIAQCLQRA----------GKRVIQLNR 442 (673)
T ss_dssp ----CSSCEEEEECCCCSSCC-SSCCHHH-----HSCCSCEEEECSSHHHHHHHHHHHHTT----------TCCEEEECS
T ss_pred ----cCCceEEEeeecCHHHH-HHHHHHH-----HhCCCCEEEEECCHHHHHHHHHHHHhC----------CCeEEEeCh
Confidence 12222222111111110 0111111 125789999999999999999999764 678999999
Q ss_pred CCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccc--cccCCCCccccccccccHHhHHhhccccC
Q 005291 256 SLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQR--QYNPSSGMYSLDVVQISKVQANQRVGRAG 333 (704)
Q Consensus 256 ~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~--~~~~~~g~~~l~~~~iS~~~~~QR~GRaG 333 (704)
++|.++++.|++|+.+|||||+++++|||+| +++|||+|....+ .||+..++..+...|.|.++|.||+||+|
T Consensus 443 ----~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaG 517 (673)
T 2wv9_A 443 ----KSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVG 517 (673)
T ss_dssp ----SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSS
T ss_pred ----HHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccC
Confidence 4889999999999999999999999999999 9999999977654 36776666656678999999999999999
Q ss_pred CC--CCceEEEecC
Q 005291 334 RT--RPGKCYRLYP 345 (704)
Q Consensus 334 R~--~~G~c~~L~~ 345 (704)
|. ++|.||.++.
T Consensus 518 R~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 518 RNPSQIGDEYHYGG 531 (673)
T ss_dssp CCSSCCCEEEEECS
T ss_pred CCCCCCCEEEEEEe
Confidence 98 5899999974
No 40
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.8e-33 Score=310.55 Aligned_cols=317 Identities=16% Similarity=0.200 Sum_probs=218.4
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCC---ccCce
Q 005291 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV---RLGEE 80 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~---~vg~~ 80 (704)
++.+++|.+++..+.++ .+++.+|||+|||.++..++.......+.++++++|++.++.|+++++.+.++. .++..
T Consensus 8 ~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~ 86 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVAL 86 (494)
T ss_dssp HCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEE
T ss_pred CCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEe
Confidence 56889999999999998 889999999999966655554432234668999999999999999999988765 33333
Q ss_pred eeeeeeccc-ccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEec
Q 005291 81 VGYAIRFED-RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (704)
Q Consensus 81 vg~~~~~~~-~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SA 158 (704)
.|.....+. ......+|+++|++.+.+.+.... .+.++++||+||||. ..+......+.+.+....+ ..++++|||
T Consensus 87 ~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~-~~~~~~~~~~~~~~~~~~~-~~~~l~lTa 164 (494)
T 1wp9_A 87 TGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHR-AVGNYAYVFIAREYKRQAK-NPLVIGLTA 164 (494)
T ss_dssp CSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGG-CSTTCHHHHHHHHHHHHCS-SCCEEEEES
T ss_pred eCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcc-cCCCCcHHHHHHHHHhcCC-CCeEEEEec
Confidence 331111100 011357899999999998886543 578899999999994 4433333444444444444 789999999
Q ss_pred CCC--hHHHhcccC---CCCc-cccC------CCcCceeEEec--CCCC-------------------------------
Q 005291 159 TLD--GEKVSKFFS---NCPT-LNVP------GKLYPVEILHS--KERP------------------------------- 193 (704)
Q Consensus 159 Tl~--~~~~~~~~~---~~~~-i~i~------~~~~pv~~~~~--~~~~------------------------------- 193 (704)
|+. .+.+.+++. .... +... ....+....+. ..+.
T Consensus 165 Tp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (494)
T 1wp9_A 165 SPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSP 244 (494)
T ss_dssp CSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCT
T ss_pred CCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 995 233333321 1100 0000 00000000000 0000
Q ss_pred -----------------------------------------------------cchHH----------------------
Q 005291 194 -----------------------------------------------------TSYLE---------------------- 198 (704)
Q Consensus 194 -----------------------------------------------------~~~~~---------------------- 198 (704)
..|+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (494)
T 1wp9_A 245 DIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKR 324 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHH
T ss_pred CcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHH
Confidence 00000
Q ss_pred ------------------HHHHHHHHHHcc----CCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccC-
Q 005291 199 ------------------SALKTAIDIHVR----EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHG- 255 (704)
Q Consensus 199 ------------------~~~~~~~~i~~~----~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~- 255 (704)
..+..+.++... ..++++|||++++..++.+++.|.+. ++.+..+||
T Consensus 325 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~g~ 394 (494)
T 1wp9_A 325 MKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD----------GIKAKRFVGQ 394 (494)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT----------TCCEEEECCS
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc----------CCCcEEEecc
Confidence 011112222211 56789999999999999999999875 677889999
Q ss_pred -------CCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhh
Q 005291 256 -------SLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQR 328 (704)
Q Consensus 256 -------~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR 328 (704)
+++.++|.++++.|++|..+|||||+++++|+|+|++++||..+. |.+...+.||
T Consensus 395 ~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~------------------~~~~~~~~Qr 456 (494)
T 1wp9_A 395 ASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP------------------VPSAIRSIQR 456 (494)
T ss_dssp SCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSC------------------CHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCC------------------CCCHHHHHHH
Confidence 999999999999999999999999999999999999999998443 4578889999
Q ss_pred ccccCCCCCceEEEecCCccccc
Q 005291 329 VGRAGRTRPGKCYRLYPSTVYHD 351 (704)
Q Consensus 329 ~GRaGR~~~G~c~~L~~~~~~~~ 351 (704)
+|||||.++|.||+|+++...+.
T Consensus 457 ~GR~~R~g~g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 457 RGRTGRHMPGRVIILMAKGTRDE 479 (494)
T ss_dssp HTTSCSCCCSEEEEEEETTSHHH
T ss_pred HhhccCCCCceEEEEEecCCHHH
Confidence 99999999999999999887654
No 41
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.97 E-value=4.7e-33 Score=326.57 Aligned_cols=320 Identities=17% Similarity=0.172 Sum_probs=199.4
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc-----CCCCCcEEEEcchhhHHHHHH-HHHHHHHhC--
Q 005291 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH-----GYTKSGIIGVTQPRRVAAVSV-ARRVAQELG-- 74 (704)
Q Consensus 3 ~LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~-----~~~~~~~ilv~~P~r~la~~~-a~rva~~~~-- 74 (704)
.++.+++|.++++.+.+|++++|.+|||+|||......+... ....+++++|++|+++|+.|+ ++.+.+..+
T Consensus 5 ~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~ 84 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKW 84 (699)
T ss_dssp --CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTT
T ss_pred CCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcC
Confidence 578899999999999999999999999999995443333321 112236899999999999999 999988776
Q ss_pred CccCceeeeeeeccc--ccCcccceEEcchHHHHHHHHhC-------CCCCCCceEEEeCCCcCCCCHHH----HHHHHH
Q 005291 75 VRLGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSN-------PDLSPYSVIILDEAHERSLNTDI----LLGLVK 141 (704)
Q Consensus 75 ~~vg~~vg~~~~~~~--~~~~~~~I~~~T~g~Ll~~l~~~-------~~l~~~~~IIiDEaHer~l~~d~----l~~llk 141 (704)
..++...|.....+. ......+|+|+|+++|.+.+... ..+.++++|||||||. ...... +..++.
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~-~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH-TNKEAVYNNIMRHYLM 163 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGG-CBTTBSSCSHHHHHHH
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccc-cCccchHHHHHHHHHH
Confidence 454444443222111 11246899999999999877322 2678899999999994 333222 222222
Q ss_pred HHHHHhc---------cCcEEEEEecCCChH----------H---HhcccCCCCccccCCC--------cCceeEEe-cC
Q 005291 142 RLVNLRA---------SKLKILITSATLDGE----------K---VSKFFSNCPTLNVPGK--------LYPVEILH-SK 190 (704)
Q Consensus 142 ~l~~~~~---------~~~kiI~~SATl~~~----------~---~~~~~~~~~~i~i~~~--------~~pv~~~~-~~ 190 (704)
....... +..++|+||||+... . +...++...+...... ..|..... ..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 243 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIAD 243 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC
T ss_pred hhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcc
Confidence 2111111 378999999999752 1 1122222111111110 11111110 00
Q ss_pred C-CC-----------------------cc-----hH--------------------------------------------
Q 005291 191 E-RP-----------------------TS-----YL-------------------------------------------- 197 (704)
Q Consensus 191 ~-~~-----------------------~~-----~~-------------------------------------------- 197 (704)
. .. .+ |.
T Consensus 244 ~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (699)
T 4gl2_A 244 ATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAY 323 (699)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 00 00
Q ss_pred -----------------------------------H-------------------------HHHHHHHHHHccCC-CCCE
Q 005291 198 -----------------------------------E-------------------------SALKTAIDIHVREP-EGDV 216 (704)
Q Consensus 198 -----------------------------------~-------------------------~~~~~~~~i~~~~~-~g~i 216 (704)
. ...+.+.......+ ++++
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~ 403 (699)
T 4gl2_A 324 THLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARG 403 (699)
T ss_dssp HHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCE
T ss_pred HHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcE
Confidence 0 00001111112223 6899
Q ss_pred EEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCC--------CCHHHHhhccCCCCCCCcEEEEEccccccccc
Q 005291 217 LIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGS--------LPPEMQVRVFSPPPPNCRRFIVSTNIAETSLT 288 (704)
Q Consensus 217 LVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~--------l~~~~r~~v~~~~~~g~~kIlvaTniae~gid 288 (704)
|||++++..++.+++.|.+.. .+. ..++.+..+||+ |+.++|.++++.|++|..+|||||+++++|||
T Consensus 404 IVF~~s~~~~~~l~~~L~~~~-~l~---~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 404 IIFTKTRQSAYALSQWITENE-KFA---EVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp EEECSCHHHHHHHHHHHHSSC-SCC--------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred EEEECcHHHHHHHHHHHHhCc-ccc---ccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 999999999999999997641 110 126788999999 99999999999999999999999999999999
Q ss_pred CCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCCCceEEEecCC
Q 005291 289 VDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPS 346 (704)
Q Consensus 289 ip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~ 346 (704)
+|++++||++++ |.|..+|.||+|||||.+ +.++.+++.
T Consensus 480 ip~v~~VI~~d~------------------p~s~~~~~Qr~GRArr~g-~~~~l~~~~ 518 (699)
T 4gl2_A 480 IKECNIVIRYGL------------------VTNEIAMVQARGRARADE-STYVLVAHS 518 (699)
T ss_dssp CCSCCCCEEESC------------------CCCHHHHHHHHTTSCSSS-CEEEEEEES
T ss_pred cccCCEEEEeCC------------------CCCHHHHHHHcCCCCCCC-ceEEEEEeC
Confidence 999999998443 457889999999987754 444444433
No 42
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.97 E-value=1.5e-31 Score=317.52 Aligned_cols=327 Identities=16% Similarity=0.176 Sum_probs=177.6
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHH-HhcCCCC---CcEEEEcchhhHHHHHHHHHHHHHh---CCc
Q 005291 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQIL-HRHGYTK---SGIIGVTQPRRVAAVSVARRVAQEL---GVR 76 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l-~~~~~~~---~~~ilv~~P~r~la~~~a~rva~~~---~~~ 76 (704)
...+++|.++++.+..++++++.+|||||||......+ ....... +++++|+.|+++++.|++..+.+.+ +..
T Consensus 247 ~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (797)
T 4a2q_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (797)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCce
Confidence 34678999999999999999999999999994333232 2222112 6689999999999999999887765 555
Q ss_pred cCceeeeeeeccc--ccCcccceEEcchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh----c
Q 005291 77 LGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR----A 148 (704)
Q Consensus 77 vg~~vg~~~~~~~--~~~~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~----~ 148 (704)
++...|....... ......+|+|+|+++|.+.+.... .+.++++|||||||. ..+......++..+.... .
T Consensus 327 v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~-~~~~~~~~~i~~~~~~~~~~~~~ 405 (797)
T 4a2q_A 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHN-TTGNHPYNVLMTRYLEQKFNSAS 405 (797)
T ss_dssp EEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGG-CSTTSHHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccc-cCCCccHHHHHHHHHHHhhccCC
Confidence 5444442211111 112457899999999999886543 477899999999995 444333444444444431 2
Q ss_pred cCcEEEEEecCCCh----------HHHh---cccCCCCccccC----------CCcCceeEEecCCC-------------
Q 005291 149 SKLKILITSATLDG----------EKVS---KFFSNCPTLNVP----------GKLYPVEILHSKER------------- 192 (704)
Q Consensus 149 ~~~kiI~~SATl~~----------~~~~---~~~~~~~~i~i~----------~~~~pv~~~~~~~~------------- 192 (704)
+..++++||||+.. +.+. ..++...+.... .+.......+....
T Consensus 406 ~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 485 (797)
T 4a2q_A 406 QLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMS 485 (797)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHH
T ss_pred CCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHH
Confidence 36899999999942 1111 111110000000 00000000000000
Q ss_pred ------------------------Ccc---hH------------------------------------------------
Q 005291 193 ------------------------PTS---YL------------------------------------------------ 197 (704)
Q Consensus 193 ------------------------~~~---~~------------------------------------------------ 197 (704)
... ++
T Consensus 486 ~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 565 (797)
T 4a2q_A 486 ETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARII 565 (797)
T ss_dssp HHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHH
Confidence 000 00
Q ss_pred ----------------------------------------------HHHHHHHHHHH----ccCCCCCEEEEeCCHHHHH
Q 005291 198 ----------------------------------------------ESALKTAIDIH----VREPEGDVLIFMTGQDDIE 227 (704)
Q Consensus 198 ----------------------------------------------~~~~~~~~~i~----~~~~~g~iLVFl~~~~~i~ 227 (704)
...+..+..+. ....++++|||++++..++
T Consensus 566 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~ 645 (797)
T 4a2q_A 566 DALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVS 645 (797)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHH
T ss_pred HHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHH
Confidence 00011111111 2255689999999999999
Q ss_pred HHHHHHHHHhh--hcCCCCCCCeEEEeccCCCCHHHHhhccCCCCC-CCcEEEEEcccccccccCCCeEEEEeCCccccc
Q 005291 228 KLVSKLEDKIR--SLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQR 304 (704)
Q Consensus 228 ~~~~~L~~~~~--~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~-g~~kIlvaTniae~gidip~v~~VId~g~~k~~ 304 (704)
.+++.|.+... ........+.....+||+|+.++|.++++.|++ |..+|||||+++++|||+|++++||+++.
T Consensus 646 ~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~---- 721 (797)
T 4a2q_A 646 ALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY---- 721 (797)
T ss_dssp HHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESC----
T ss_pred HHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCC----
Confidence 99999976310 000001124456678999999999999999999 99999999999999999999999998442
Q ss_pred cccCCCCccccccccccHHhHHhhccccCCCCCceEEEecCCcccc
Q 005291 305 QYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYH 350 (704)
Q Consensus 305 ~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~~~ 350 (704)
|-|..+|+||+|| ||.++|.||+|+++.+.+
T Consensus 722 --------------p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 722 --------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 752 (797)
T ss_dssp --------------CSCHHHHHTC--------CCCEEEEECCHHHH
T ss_pred --------------CCCHHHHHHhcCC-CCCCCceEEEEEeCCcHH
Confidence 5588899999999 999999999999887654
No 43
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=2.7e-30 Score=310.27 Aligned_cols=326 Identities=16% Similarity=0.182 Sum_probs=178.5
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCC-CC---CcEEEEcchhhHHHHHHHHHHHHHh---CCc
Q 005291 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGY-TK---SGIIGVTQPRRVAAVSVARRVAQEL---GVR 76 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~-~~---~~~ilv~~P~r~la~~~a~rva~~~---~~~ 76 (704)
...+++|.++++.+.+|+++++.+|||||||......+..... .. +++++++.|+++++.|+++.+.+.+ +..
T Consensus 247 ~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (936)
T 4a2w_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (936)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 3467899999999999999999999999999544444433322 22 6689999999999999999887664 555
Q ss_pred cCceeeeeeeccc--ccCcccceEEcchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh----c
Q 005291 77 LGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR----A 148 (704)
Q Consensus 77 vg~~vg~~~~~~~--~~~~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~----~ 148 (704)
++...|....... ......+|+|+|+++|.+.+.... .+.++++|||||||. .........++..+.... .
T Consensus 327 v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~-~~~~~~~~~i~~~~~~~~~~~~~ 405 (936)
T 4a2w_A 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHN-TTGNHPYNVLMTRYLEQKFNSAS 405 (936)
T ss_dssp EEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGG-CSTTCHHHHHHHHHHHHHHTTCS
T ss_pred EEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccc-cCCCccHHHHHHHHHHHhhccCC
Confidence 5444442211111 112357899999999999886544 477899999999995 444333444444444431 2
Q ss_pred cCcEEEEEecCCCh----------HHHh---cccCCCCccccCCC---------cCceeEE--ecCC-------------
Q 005291 149 SKLKILITSATLDG----------EKVS---KFFSNCPTLNVPGK---------LYPVEIL--HSKE------------- 191 (704)
Q Consensus 149 ~~~kiI~~SATl~~----------~~~~---~~~~~~~~i~i~~~---------~~pv~~~--~~~~------------- 191 (704)
+..++++||||+.. +.+. ..++ ...+..... ..|.... +...
T Consensus 406 ~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~-~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~ 484 (936)
T 4a2w_A 406 QLPQILGLTASVGVGNAKNIEETIEHICSLCSYLD-IQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 484 (936)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHT-CSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CcCeEEEecCCcccccchhHHHHHHHHHHHHHhcC-CceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHH
Confidence 36899999999942 1111 1111 111100000 0000000 0000
Q ss_pred ------------------------CCcc---hH-----------------------------------------------
Q 005291 192 ------------------------RPTS---YL----------------------------------------------- 197 (704)
Q Consensus 192 ------------------------~~~~---~~----------------------------------------------- 197 (704)
.... ++
T Consensus 485 ~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~ 564 (936)
T 4a2w_A 485 SETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 564 (936)
T ss_dssp HHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence 0000 00
Q ss_pred -------H----------------------------------------HHHHHHHHHHc----cCCCCCEEEEeCCHHHH
Q 005291 198 -------E----------------------------------------SALKTAIDIHV----REPEGDVLIFMTGQDDI 226 (704)
Q Consensus 198 -------~----------------------------------------~~~~~~~~i~~----~~~~g~iLVFl~~~~~i 226 (704)
. ..+..+.++.. ...++++|||++++..+
T Consensus 565 ~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~a 644 (936)
T 4a2w_A 565 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 644 (936)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHH
Confidence 0 00111111111 24568999999999999
Q ss_pred HHHHHHHHHHhh--hcCCCCCCCeEEEeccCCCCHHHHhhccCCCCC-CCcEEEEEcccccccccCCCeEEEEeCCcccc
Q 005291 227 EKLVSKLEDKIR--SLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQ 303 (704)
Q Consensus 227 ~~~~~~L~~~~~--~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~-g~~kIlvaTniae~gidip~v~~VId~g~~k~ 303 (704)
+.+++.|.+... ........+.....+||+|+..+|.++++.|++ |..+|||||+++++|||+|++++||+++.
T Consensus 645 e~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~--- 721 (936)
T 4a2w_A 645 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY--- 721 (936)
T ss_dssp HHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESC---
T ss_pred HHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCC---
Confidence 999999987410 011001124455677999999999999999999 99999999999999999999999998432
Q ss_pred ccccCCCCccccccccccHHhHHhhccccCCCCCceEEEecCCcccc
Q 005291 304 RQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYH 350 (704)
Q Consensus 304 ~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~~~ 350 (704)
|-|..+++||+|| ||..+|.||.|+++...+
T Consensus 722 ---------------p~s~~~~iQr~GR-GR~~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 722 ---------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 752 (936)
T ss_dssp ---------------CSCSHHHHCC--------CCCEEEEESCHHHH
T ss_pred ---------------CCCHHHHHHhcCC-CCCCCCEEEEEEeCCCHH
Confidence 4577788999999 999999999999887654
No 44
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.96 E-value=3.1e-29 Score=305.29 Aligned_cols=298 Identities=18% Similarity=0.198 Sum_probs=210.8
Q ss_pred chHHHHHHHHHhcc----CC--EEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCc
Q 005291 6 ILQYEETIVETVEQ----NP--VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (704)
Q Consensus 6 i~~~~~~il~~l~~----~~--~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~ 79 (704)
.+++|.++++.+.. ++ +++++||||+|||......+.... ..+.++++++|+++++.|+++++.+.++.. +.
T Consensus 604 ~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~-~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~-~i 681 (1151)
T 2eyq_A 604 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-DNHKQVAVLVPTTLLAQQHYDNFRDRFANW-PV 681 (1151)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHSTTT-TC
T ss_pred CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHH-HhCCeEEEEechHHHHHHHHHHHHHHhhcC-CC
Confidence 37889988888765 55 899999999999955433332221 246699999999999999999998776421 22
Q ss_pred eeeeeeeccc----------ccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc
Q 005291 80 EVGYAIRFED----------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (704)
Q Consensus 80 ~vg~~~~~~~----------~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~ 149 (704)
.++.-.++.. ......+|+++|++.+ ..+..+.++++|||||+|. +.... ...+.... .
T Consensus 682 ~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll----~~~~~~~~l~lvIiDEaH~--~g~~~----~~~l~~l~-~ 750 (1151)
T 2eyq_A 682 RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL----QSDVKFKDLGLLIVDEEHR--FGVRH----KERIKAMR-A 750 (1151)
T ss_dssp CEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH----HSCCCCSSEEEEEEESGGG--SCHHH----HHHHHHHH-T
T ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH----hCCccccccceEEEechHh--cChHH----HHHHHHhc-C
Confidence 3332222111 1123578999999765 3445788999999999994 33322 12222233 3
Q ss_pred CcEEEEEecCCChHHHhcccCCC---Ccccc-CCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHH
Q 005291 150 KLKILITSATLDGEKVSKFFSNC---PTLNV-PGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (704)
Q Consensus 150 ~~kiI~~SATl~~~~~~~~~~~~---~~i~i-~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~ 225 (704)
+.++++||||+.+..+...+.+. .++.. +....++..++...... .....+.... ..+++++|||+++++
T Consensus 751 ~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~----~i~~~il~~l--~~g~qvlvf~~~v~~ 824 (1151)
T 2eyq_A 751 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSM----VVREAILREI--LRGGQVYYLYNDVEN 824 (1151)
T ss_dssp TSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHH----HHHHHHHHHH--TTTCEEEEECCCSSC
T ss_pred CCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHH----HHHHHHHHHH--hcCCeEEEEECCHHH
Confidence 78999999999766654433322 12222 22334555554432221 1222222222 346899999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCcccccc
Q 005291 226 IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQ 305 (704)
Q Consensus 226 i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~ 305 (704)
++.+++.|.+.. ++..+..+||+|+..+|.++++.|.+|+.+|||||+++++|||+|++++||..+
T Consensus 825 ~~~l~~~L~~~~--------p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~------ 890 (1151)
T 2eyq_A 825 IQKAAERLAELV--------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER------ 890 (1151)
T ss_dssp HHHHHHHHHHHC--------TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETT------
T ss_pred HHHHHHHHHHhC--------CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeC------
Confidence 999999998873 477899999999999999999999999999999999999999999999999522
Q ss_pred ccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCc
Q 005291 306 YNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (704)
Q Consensus 306 ~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~ 347 (704)
+ .+.+.+++.||+||+||. .+|.||.+++..
T Consensus 891 --~---------~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 891 --A---------DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp --T---------TSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred --C---------CCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 1 123557889999999998 589999998764
No 45
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.96 E-value=3e-30 Score=312.28 Aligned_cols=269 Identities=12% Similarity=0.115 Sum_probs=184.4
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeee
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~ 84 (704)
..+++|.++++.+.+|++++++||||||||++....+.... ..+.+++++.|+++|+.|+++++.+ ++ ..+..++.-
T Consensus 78 ~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~-~~~~~~Lil~PtreLa~Q~~~~l~~-l~-~~~i~v~~l 154 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLERLQK-LA-DEKVKIFGF 154 (1104)
T ss_dssp CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHT-TS-CTTSCEEEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH-hcCCeEEEEechHHHHHHHHHHHHH-hh-CCCCeEEEE
Confidence 45789999999999999999999999999964333333222 3467899999999999999999977 43 333334322
Q ss_pred eecccc----------cCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCH---HHHHH-------HHHHHH
Q 005291 85 IRFEDR----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNT---DILLG-------LVKRLV 144 (704)
Q Consensus 85 ~~~~~~----------~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~---d~l~~-------llk~l~ 144 (704)
...... .....+|+|+|||.|.+.+.. ..+.++++|||||||+-.-.. |.++. .++.++
T Consensus 155 ~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il 233 (1104)
T 4ddu_A 155 YSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAF 233 (1104)
T ss_dssp CTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHH
Confidence 222111 112479999999999877643 346789999999999422111 22222 245555
Q ss_pred HHhc-----------cCcEEEEEecCCChHH-----HhcccCCCCccccCCCcCceeEEecCCCCcchHHHHHHHHHHHH
Q 005291 145 NLRA-----------SKLKILITSATLDGEK-----VSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIH 208 (704)
Q Consensus 145 ~~~~-----------~~~kiI~~SATl~~~~-----~~~~~~~~~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~ 208 (704)
...+ .+.+++++|||+.+.. +..++. ..+.........+...+........+ ..++..
T Consensus 234 ~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-i~v~~~~~~~~~i~~~~~~~~k~~~L----~~ll~~- 307 (1104)
T 4ddu_A 234 STIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRISSRSKEKL----VELLEI- 307 (1104)
T ss_dssp HHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-CCCCBCCCCCCCEEEEEESCCCHHHH----HHHHHH-
T ss_pred HhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-EEeccCCCCcCCceeEEEecCHHHHH----HHHHHh-
Confidence 5443 5899999999953322 222222 11111111222333444333222222 122221
Q ss_pred ccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEE-eccCCCCHHHHhhccCCCCCCCcEEEEE----cccc
Q 005291 209 VREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVIL-PLHGSLPPEMQVRVFSPPPPNCRRFIVS----TNIA 283 (704)
Q Consensus 209 ~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~-~lh~~l~~~~r~~v~~~~~~g~~kIlva----Tnia 283 (704)
.++++||||++++.++.++..|... ++.+. .+|| +|.+ ++.|++|+.+|||| |+++
T Consensus 308 ---~~~~~LVF~~s~~~a~~l~~~L~~~----------g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~Tdvl 368 (1104)
T 4ddu_A 308 ---FRDGILIFAQTEEEGKELYEYLKRF----------KFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKL 368 (1104)
T ss_dssp ---HCSSEEEEESSSHHHHHHHHHHHHT----------TCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHH
T ss_pred ---cCCCEEEEECcHHHHHHHHHHHHhC----------CCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCee
Confidence 2489999999999999999999875 67787 9998 2555 99999999999999 9999
Q ss_pred cccccCCC-eEEEEeCCccc
Q 005291 284 ETSLTVDG-VVYVIDCGYVK 302 (704)
Q Consensus 284 e~gidip~-v~~VId~g~~k 302 (704)
++|||+|+ |++||++|+++
T Consensus 369 arGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 369 TRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp CCSCCCTTTCCEEEEESCCE
T ss_pred EecCcCCCCCCEEEEECCCC
Confidence 99999999 99999999988
No 46
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.96 E-value=9.3e-31 Score=305.00 Aligned_cols=300 Identities=16% Similarity=0.200 Sum_probs=199.3
Q ss_pred CchHHHHHHHHHhccC------CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhC---C
Q 005291 5 PILQYEETIVETVEQN------PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG---V 75 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~------~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~---~ 75 (704)
..+++|.++++.+.++ .+++++||||||||......+.... ..+.+++++.|+++|+.|+++++.+.+. .
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l-~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi 446 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNY-EAGFQTAFMVPTSILAIQHYRRTVESFSKFNI 446 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHH-HHTSCEEEECSCHHHHHHHHHHHHHHHTCSSC
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCc
Confidence 4678899888887765 5889999999999954443333321 2356899999999999999999987763 3
Q ss_pred ccCceeeeeeecc------cccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc
Q 005291 76 RLGEEVGYAIRFE------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (704)
Q Consensus 76 ~vg~~vg~~~~~~------~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~ 149 (704)
.++...|.....+ .......+|+|+|++.+. ....+.++++||+||+|..+... . ..+.... .
T Consensus 447 ~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~----~~~~~~~l~lVVIDEaHr~g~~q--r----~~l~~~~-~ 515 (780)
T 1gm5_A 447 HVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQ----EDVHFKNLGLVIIDEQHRFGVKQ--R----EALMNKG-K 515 (780)
T ss_dssp CEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHH----HCCCCSCCCEEEEESCCCC-----------CCCCSSS-S
T ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----hhhhccCCceEEecccchhhHHH--H----HHHHHhC-C
Confidence 3333333211111 011235799999998764 35578899999999999532211 0 1111122 3
Q ss_pred CcEEEEEecCCChHHHh-cccCCCCccc---cCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHH
Q 005291 150 KLKILITSATLDGEKVS-KFFSNCPTLN---VPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (704)
Q Consensus 150 ~~kiI~~SATl~~~~~~-~~~~~~~~i~---i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~ 225 (704)
+.++++||||+.+..+. .++++..+.. .+....|+...+.... ........+... ...+++++||||..++
T Consensus 516 ~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~---~~~~l~~~i~~~--l~~g~qvlVf~~~ie~ 590 (780)
T 1gm5_A 516 MVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMD---RVNEVYEFVRQE--VMRGGQAFIVYPLIEE 590 (780)
T ss_dssp CCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSS---THHHHHHHHHHH--TTTSCCBCCBCCCC--
T ss_pred CCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccc---hHHHHHHHHHHH--HhcCCcEEEEecchhh
Confidence 68999999998776654 3344332222 2333456665544332 222223322222 2456789999998765
Q ss_pred H--------HHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEe
Q 005291 226 I--------EKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVID 297 (704)
Q Consensus 226 i--------~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId 297 (704)
. +.+++.|.+. ..+++.+..+||+|+.++|.++++.|++|+.+|||||+++++|||+|++++||+
T Consensus 591 se~l~~~~a~~l~~~L~~~-------~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi 663 (780)
T 1gm5_A 591 SDKLNVKSAVEMYEYLSKE-------VFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI 663 (780)
T ss_dssp ------CHHHHHHHSGGGS-------CC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB
T ss_pred hhhhhHHHHHHHHHHHHhh-------hcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEE
Confidence 4 3344333320 113678899999999999999999999999999999999999999999999997
Q ss_pred CCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecC
Q 005291 298 CGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYP 345 (704)
Q Consensus 298 ~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~ 345 (704)
.+ +. ..+.+++.||+||+||. .+|.||.+++
T Consensus 664 ~d--------~~---------r~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 664 EN--------PE---------RFGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp CS--------CS---------SSCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred eC--------CC---------CCCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 33 22 12456788999999997 6899999987
No 47
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.96 E-value=2.2e-29 Score=281.58 Aligned_cols=294 Identities=17% Similarity=0.163 Sum_probs=203.2
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCc-cCceee
Q 005291 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR-LGEEVG 82 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~-vg~~vg 82 (704)
++++++|.++++.+.+++.+++.+|||+|||.+...++... +.++++++|+++++.|+++++.+ ++.. ++...|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~~v~~~~g 166 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFSG 166 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGG-GCGGGEEEBSS
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHh-CCCcceEEECC
Confidence 46899999999999999999999999999996655555543 46899999999999999999977 6554 333222
Q ss_pred eeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCCh
Q 005291 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (704)
Q Consensus 83 ~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~ 162 (704)
......+|+++|++.+...+.. ...++++||+||+|. ..+..+ +.+....+ ..+++++|||+..
T Consensus 167 -------~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~liIvDEaH~-~~~~~~-----~~~~~~~~-~~~~l~lSATp~~ 230 (472)
T 2fwr_A 167 -------RIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHH-LPAESY-----VQIAQMSI-APFRLGLTATFER 230 (472)
T ss_dssp -------SCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEETGGG-TTSTTT-----HHHHHTCC-CSEEEEEESCCCC
T ss_pred -------CcCCcCCEEEEEcHHHHHHHHH--hcCCCCEEEEECCcC-CCChHH-----HHHHHhcC-CCeEEEEecCccC
Confidence 1223578999999998776532 224699999999994 444432 23444444 7889999999952
Q ss_pred H-----HHhcccCC----CCccccCCC-cCc-----eeEEe--------------------------------cC-----
Q 005291 163 E-----KVSKFFSN----CPTLNVPGK-LYP-----VEILH--------------------------------SK----- 190 (704)
Q Consensus 163 ~-----~~~~~~~~----~~~i~i~~~-~~p-----v~~~~--------------------------------~~----- 190 (704)
. .+..+++. .....+.+. ..+ +.+.. ..
T Consensus 231 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 310 (472)
T 2fwr_A 231 EDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMAS 310 (472)
T ss_dssp TTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTT
T ss_pred CCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHh
Confidence 1 13333321 001111000 000 00000 00
Q ss_pred --CC--Ccch------------HHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEecc
Q 005291 191 --ER--PTSY------------LESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLH 254 (704)
Q Consensus 191 --~~--~~~~------------~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh 254 (704)
.. .... .......+..+.....++++|||+++.+.++.+++.|. +..+|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~---------------~~~~~ 375 (472)
T 2fwr_A 311 GYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL---------------IPAIT 375 (472)
T ss_dssp CCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT---------------CCBCC
T ss_pred ccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC---------------cceee
Confidence 00 0000 00112333333444567899999999999998887662 33589
Q ss_pred CCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCC
Q 005291 255 GSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGR 334 (704)
Q Consensus 255 ~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR 334 (704)
|+++..+|.++++.|++|..+|||||+++++|+|+|++++||+.+. |.|..++.||+|||||
T Consensus 376 g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~------------------~~s~~~~~Q~~GR~~R 437 (472)
T 2fwr_A 376 HRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSG------------------SGSAREYIQRLGRILR 437 (472)
T ss_dssp SSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECC------------------SSCCHHHHHHHHHSBC
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECC------------------CCCHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999998332 4467889999999999
Q ss_pred CCCc----eEEEecCCccccc
Q 005291 335 TRPG----KCYRLYPSTVYHD 351 (704)
Q Consensus 335 ~~~G----~c~~L~~~~~~~~ 351 (704)
.++| .+|.++++...+.
T Consensus 438 ~g~~k~~~~i~~lv~~~t~ee 458 (472)
T 2fwr_A 438 PSKGKKEAVLYELISRGTGEV 458 (472)
T ss_dssp CCTTTCCEEEEEEEECSCC--
T ss_pred CCCCCceEEEEEEEeCCCchH
Confidence 9766 5777887766554
No 48
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.96 E-value=2.2e-29 Score=304.82 Aligned_cols=262 Identities=14% Similarity=0.128 Sum_probs=172.6
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhC---C----ccCce
Q 005291 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG---V----RLGEE 80 (704)
Q Consensus 8 ~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~---~----~vg~~ 80 (704)
++|.++++.+.+|++++++||||||||++..+++... ...+.+++++.|+++|+.|+++++.+... . .++..
T Consensus 59 ~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~~~-~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~ 137 (1054)
T 1gku_B 59 AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFL-ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYY 137 (1054)
T ss_dssp HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHH-HTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEEC
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHH-hhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEE
Confidence 8999999999999999999999999996433333332 23467899999999999999999876553 3 33333
Q ss_pred eeeeeecc-----cccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh--------
Q 005291 81 VGYAIRFE-----DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-------- 147 (704)
Q Consensus 81 vg~~~~~~-----~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~-------- 147 (704)
+|.....+ ..... .+|+|+|||+|++.+.. +.++++|||||||+ .++. ...++.+....
T Consensus 138 ~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~---L~~l~~lViDEah~-~l~~---~~~~~~i~~~lgf~~~~~~ 209 (1054)
T 1gku_B 138 HGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE---LGHFDFIFVDDVDA-ILKA---SKNVDKLLHLLGFHYDLKT 209 (1054)
T ss_dssp CSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT---SCCCSEEEESCHHH-HHTS---THHHHHHHHHTTEEEETTT
T ss_pred eCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH---hccCCEEEEeChhh-hhhc---cccHHHHHHHhCcchhhhh
Confidence 33221111 11122 89999999999987654 77999999999994 3331 11122222222
Q ss_pred ---ccCcEEEEEecCCChHH--HhcccCCCCccccCCCc---CceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEE
Q 005291 148 ---ASKLKILITSATLDGEK--VSKFFSNCPTLNVPGKL---YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIF 219 (704)
Q Consensus 148 ---~~~~kiI~~SATl~~~~--~~~~~~~~~~i~i~~~~---~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVF 219 (704)
+.+.+++++|||++... ...++.+...+.+.... ..+...+........+. .+.. ..++++|||
T Consensus 210 ~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~~k~~~L~-------~ll~-~~~~~~LVF 281 (1054)
T 1gku_B 210 KSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDESISTLS-------SILE-KLGTGGIIY 281 (1054)
T ss_dssp TEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEESCCCTTTTH-------HHHT-TSCSCEEEE
T ss_pred hhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEechhHHHHHH-------HHHh-hcCCCEEEE
Confidence 23678899999986531 11222222222232221 22344444322222221 2222 225789999
Q ss_pred eCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEE----cccccccccCCCe-EE
Q 005291 220 MTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVS----TNIAETSLTVDGV-VY 294 (704)
Q Consensus 220 l~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlva----Tniae~gidip~v-~~ 294 (704)
|+++++++.+++.|.+. +.+..+||++. ++++.|++|+.+|||| ||++++|||+|+| ++
T Consensus 282 ~~t~~~a~~l~~~L~~~-----------~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~ 345 (1054)
T 1gku_B 282 ARTGEEAEEIYESLKNK-----------FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRF 345 (1054)
T ss_dssp ESSHHHHHHHHHTTTTS-----------SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCE
T ss_pred EcCHHHHHHHHHHHhhc-----------cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccE
Confidence 99999999999887531 56889999984 5667788999999999 9999999999995 99
Q ss_pred EEeCCccc
Q 005291 295 VIDCGYVK 302 (704)
Q Consensus 295 VId~g~~k 302 (704)
||++|.++
T Consensus 346 VI~~~~P~ 353 (1054)
T 1gku_B 346 AVFVGCPS 353 (1054)
T ss_dssp EEEESCCE
T ss_pred EEEeCCCc
Confidence 99999983
No 49
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.96 E-value=2e-29 Score=284.73 Aligned_cols=302 Identities=13% Similarity=0.077 Sum_probs=197.1
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeee
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~ 84 (704)
..+++|.++++.+.+++.+++++|||+|||.....++........+++++++|+++|+.|+++++.+. +...+..++.-
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~-~~~~~~~v~~~ 191 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY-RLFSHAMIKKI 191 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHT-TSSCGGGEEEC
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHh-hcCCccceEEE
Confidence 56889999999999999999999999999955444443322223459999999999999999999544 32222222211
Q ss_pred eecccc---cCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 85 IRFEDR---TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 85 ~~~~~~---~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
...... .....+|+++|++.+.+. ....+.++++|||||+|. ... . -+..++...+...++++||||++
T Consensus 192 ~~~~~~~~~~~~~~~I~i~T~~~l~~~--~~~~~~~~~liIiDE~H~-~~~-~----~~~~il~~~~~~~~~l~lSATp~ 263 (510)
T 2oca_A 192 GGGASKDDKYKNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHL-ATG-K----SISSIISGLNNCMFKFGLSGSLR 263 (510)
T ss_dssp GGGCCTTGGGCTTCSEEEEEHHHHTTS--CGGGGGGEEEEEEETGGG-CCH-H----HHHHHGGGCTTCCEEEEEESCGG
T ss_pred ecCCccccccccCCcEEEEeHHHHhhc--hhhhhhcCCEEEEECCcC-CCc-c----cHHHHHHhcccCcEEEEEEeCCC
Confidence 111111 125689999999976543 113567899999999994 333 2 23444444434789999999995
Q ss_pred hHH-----HhcccCCCCccccCC-------CcCceeEEe--cCCCC--------cchHH------------HHHHHHHHH
Q 005291 162 GEK-----VSKFFSNCPTLNVPG-------KLYPVEILH--SKERP--------TSYLE------------SALKTAIDI 207 (704)
Q Consensus 162 ~~~-----~~~~~~~~~~i~i~~-------~~~pv~~~~--~~~~~--------~~~~~------------~~~~~~~~i 207 (704)
... +..+++. .++.++. ...|..+.. ...+. ..|.. ..+...+..
T Consensus 264 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 342 (510)
T 2oca_A 264 DGKANIMQYVGMFGE-IFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIK 342 (510)
T ss_dssp GCSSCHHHHHHHHCS-EECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcccHHHhHHhhCC-eEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHH
Confidence 431 2233432 2222221 111111111 00000 11111 011111222
Q ss_pred HccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEc-cccccc
Q 005291 208 HVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVST-NIAETS 286 (704)
Q Consensus 208 ~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaT-niae~g 286 (704)
........++||++ .++++.+++.|.+. +..+..+||+++.++|.++++.|.+|+.+||||| +++++|
T Consensus 343 ~~~~~~~~~ivf~~-~~~~~~l~~~L~~~----------~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~G 411 (510)
T 2oca_A 343 LAQKDENAFVMFKH-VSHGKAIFDLIKNE----------YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTG 411 (510)
T ss_dssp HHTTTCEEEEEESS-HHHHHHHHHHHHTT----------CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHS
T ss_pred HHhcCCCeEEEEec-HHHHHHHHHHHHHc----------CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcc
Confidence 22223445666666 88888888888754 3478899999999999999999999999999999 999999
Q ss_pred ccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCCCce-EEEecC
Q 005291 287 LTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGK-CYRLYP 345 (704)
Q Consensus 287 idip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~-c~~L~~ 345 (704)
+|+|++++||..+. +.|..++.||+||+||.++|. ++.+|+
T Consensus 412 iDip~v~~vi~~~~------------------~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 412 ISVKNLHHVVLAHG------------------VKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCCCSEEEEEESSC------------------CCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cccccCcEEEEeCC------------------CCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999997442 346678899999999996654 666664
No 50
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.94 E-value=4e-26 Score=261.20 Aligned_cols=304 Identities=15% Similarity=0.135 Sum_probs=198.9
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHH---HHHhCCccCcee
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEEV 81 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rv---a~~~~~~vg~~v 81 (704)
-++.|...+..+.+|+ +..++||+||| ++..+++.... .+..++|+.|++.||.|.++.+ .+.+|..++..+
T Consensus 84 pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL--~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~ 159 (844)
T 1tf5_A 84 PFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL--TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNL 159 (844)
T ss_dssp CCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT--TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred CcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH--cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 3577888888899998 88999999999 44433333222 2457899999999999988765 455666666555
Q ss_pred eeeeecccccCcccceEEcchHHH-HHHHHhC-------CCCCCCceEEEeCCCcCCCCHH--------------HHHHH
Q 005291 82 GYAIRFEDRTSERTLIKYLTDGVL-LREILSN-------PDLSPYSVIILDEAHERSLNTD--------------ILLGL 139 (704)
Q Consensus 82 g~~~~~~~~~~~~~~I~~~T~g~L-l~~l~~~-------~~l~~~~~IIiDEaHer~l~~d--------------~l~~l 139 (704)
|.....+......++|+|+|||.| ..++... ..++.+.++||||||...+|.. .+...
T Consensus 160 gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~ 239 (844)
T 1tf5_A 160 NSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQ 239 (844)
T ss_dssp TTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHH
T ss_pred CCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHH
Confidence 522111112223579999999999 5554332 3578899999999994222432 12233
Q ss_pred HHHHHHHhc---------cCcEEE-----------------EEecCCCh--HHH-----h-cccC-C-------------
Q 005291 140 VKRLVNLRA---------SKLKIL-----------------ITSATLDG--EKV-----S-KFFS-N------------- 171 (704)
Q Consensus 140 lk~l~~~~~---------~~~kiI-----------------~~SATl~~--~~~-----~-~~~~-~------------- 171 (704)
+..+....+ ++.++. ++|||.+. ..+ + .+|. +
T Consensus 240 i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~iv 319 (844)
T 1tf5_A 240 ANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIV 319 (844)
T ss_dssp HHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEB
T ss_pred HHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEe
Confidence 455554443 134454 66777542 111 1 1111 0
Q ss_pred ----------------------------------------------------------------------CCccccCCCc
Q 005291 172 ----------------------------------------------------------------------CPTLNVPGKL 181 (704)
Q Consensus 172 ----------------------------------------------------------------------~~~i~i~~~~ 181 (704)
..++.+|..
T Consensus 320 De~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn- 398 (844)
T 1tf5_A 320 DSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTN- 398 (844)
T ss_dssp CTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCS-
T ss_pred ecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCC-
Confidence 011111110
Q ss_pred Ccee------EEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccC
Q 005291 182 YPVE------ILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHG 255 (704)
Q Consensus 182 ~pv~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~ 255 (704)
.|+. ..|. ...+.....+..+...+ ..+.++||||++++.++.++..|... ++.+..+||
T Consensus 399 ~p~~r~d~~d~v~~--~~~~K~~al~~~i~~~~--~~~~pvLVft~s~~~se~Ls~~L~~~----------gi~~~vLhg 464 (844)
T 1tf5_A 399 RPVVRDDRPDLIYR--TMEGKFKAVAEDVAQRY--MTGQPVLVGTVAVETSELISKLLKNK----------GIPHQVLNA 464 (844)
T ss_dssp SCCCCEECCCEEES--SHHHHHHHHHHHHHHHH--HHTCCEEEEESCHHHHHHHHHHHHTT----------TCCCEEECS
T ss_pred CCcccccCCcEEEe--CHHHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHHC----------CCCEEEeeC
Confidence 0000 0111 01111222222222222 23558999999999999999999865 777888999
Q ss_pred CCCHHHHhhccCCCCCCCcEEEEEcccccccccCC--------CeEEEEeCCccccccccCCCCccccccccccHHhHHh
Q 005291 256 SLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD--------GVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQ 327 (704)
Q Consensus 256 ~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip--------~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~Q 327 (704)
.+...++..+...++.| .|+||||+|++|+||+ ++.+||++.+ |.|...|.|
T Consensus 465 ~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~------------------p~s~r~y~h 524 (844)
T 1tf5_A 465 KNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTER------------------HESRRIDNQ 524 (844)
T ss_dssp SCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSC------------------CSSHHHHHH
T ss_pred CccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecC------------------CCCHHHHHh
Confidence 99888888777777766 6999999999999999 8999999664 668889999
Q ss_pred hccccCCC-CCceEEEecCCcc
Q 005291 328 RVGRAGRT-RPGKCYRLYPSTV 348 (704)
Q Consensus 328 R~GRaGR~-~~G~c~~L~~~~~ 348 (704)
|+||+||. .+|.++.+++.++
T Consensus 525 r~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 525 LRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp HHTTSSGGGCCEEEEEEEETTS
T ss_pred hcCccccCCCCCeEEEEecHHH
Confidence 99999999 7999999988665
No 51
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.94 E-value=2e-26 Score=233.21 Aligned_cols=172 Identities=41% Similarity=0.642 Sum_probs=153.1
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCC----CCcEEEEcchhhHHHHHHHHHHHHHhCCccC
Q 005291 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYT----KSGIIGVTQPRRVAAVSVARRVAQELGVRLG 78 (704)
Q Consensus 3 ~LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~----~~~~ilv~~P~r~la~~~a~rva~~~~~~vg 78 (704)
.+|++.+|+++++.+.+|++++++|||||||||++..++...... .+..+++++|+++++.+++++++..++..++
T Consensus 59 ~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~ 138 (235)
T 3llm_A 59 LLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPG 138 (235)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT
T ss_pred cCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccC
Confidence 589999999999999999999999999999998887776654322 1338999999999999999999999999999
Q ss_pred ceeeeeeecccccC-cccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEe
Q 005291 79 EEVGYAIRFEDRTS-ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (704)
Q Consensus 79 ~~vg~~~~~~~~~~-~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~S 157 (704)
..+||.++++.... ..++|+|+|+|++++.+.. .+.++++|||||||+|+++.++....++.+....+ +.++++||
T Consensus 139 ~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~S 215 (235)
T 3llm_A 139 KSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMS 215 (235)
T ss_dssp SSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEE
T ss_pred ceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEe
Confidence 99999998887765 6789999999999999876 48999999999999888999999888999988886 89999999
Q ss_pred cCCChHHHhcccCCCCcccc
Q 005291 158 ATLDGEKVSKFFSNCPTLNV 177 (704)
Q Consensus 158 ATl~~~~~~~~~~~~~~i~i 177 (704)
||++.+.+.+||++++++.+
T Consensus 216 AT~~~~~~~~~~~~~pvi~v 235 (235)
T 3llm_A 216 ATIDTSMFCEYFFNCPIIEV 235 (235)
T ss_dssp CSSCCHHHHHHTTSCCCEEC
T ss_pred cCCCHHHHHHHcCCCCEEeC
Confidence 99999999999999988764
No 52
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.94 E-value=2.7e-26 Score=263.78 Aligned_cols=300 Identities=15% Similarity=0.130 Sum_probs=177.6
Q ss_pred CchHHHHHHHHHhcc-----CCEEEEEcCCCCcHHHHHHHHHHhcCC-C-------CCcEEEEcchhhHHHHHHH-HHHH
Q 005291 5 PILQYEETIVETVEQ-----NPVVVVIGETGSGKSTQLSQILHRHGY-T-------KSGIIGVTQPRRVAAVSVA-RRVA 70 (704)
Q Consensus 5 Pi~~~~~~il~~l~~-----~~~vii~gpTGsGKTt~l~~~l~~~~~-~-------~~~~ilv~~P~r~la~~~a-~rva 70 (704)
..+.+|.+.++.+.+ ++.+++++|||||||..+..++..... . .+.+++++.|+++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~- 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF- 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC-
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH-
Confidence 567899999887764 467899999999999554444433211 1 4568999999999999988 433
Q ss_pred HHhCCccCceeeeeeecccccCcccceEEcchHHHHHHHH-----hCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHH
Q 005291 71 QELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREIL-----SNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (704)
Q Consensus 71 ~~~~~~vg~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~-----~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~ 145 (704)
+.++.. ++. + .........+|+++|++.|..... .......+++||+|||| |....+ ...++.++.
T Consensus 257 ~~~~~~----~~~-~-~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH-~~~~~~--~~~~~~il~ 327 (590)
T 3h1t_A 257 TPFGDA----RHK-I-EGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECH-RGSARD--NSNWREILE 327 (590)
T ss_dssp TTTCSS----EEE-C-CC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------CHHHHH
T ss_pred Hhcchh----hhh-h-hccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCc-cccccc--hHHHHHHHH
Confidence 223322 221 1 112233567899999999887652 22235678999999999 554432 123455555
Q ss_pred HhccCcEEEEEecCCCh---HHHhcccCCCCcccc-------CCCcCceeEEecCC--C---------------------
Q 005291 146 LRASKLKILITSATLDG---EKVSKFFSNCPTLNV-------PGKLYPVEILHSKE--R--------------------- 192 (704)
Q Consensus 146 ~~~~~~kiI~~SATl~~---~~~~~~~~~~~~i~i-------~~~~~pv~~~~~~~--~--------------------- 192 (704)
..+ ..++|+||||+.. ..+..+|+.. +... .+...|........ .
T Consensus 328 ~~~-~~~~l~lTATP~~~~~~~~~~~f~~~-~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (590)
T 3h1t_A 328 YFE-PAFQIGMTATPLREDNRDTYRYFGNP-IYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDG 405 (590)
T ss_dssp HST-TSEEEEEESSCSCTTTHHHHHHSCSC-SEEECHHHHHHHTSSCCEEEEEEEETTCC--------------------
T ss_pred hCC-cceEEEeccccccccchhHHHHcCCc-eEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccc
Confidence 565 6889999999843 2355666542 2110 11111211111000 0
Q ss_pred ---Ccch---------HHHHHHHHHHHH-ccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCH
Q 005291 193 ---PTSY---------LESALKTAIDIH-VREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPP 259 (704)
Q Consensus 193 ---~~~~---------~~~~~~~~~~i~-~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~ 259 (704)
..+. .....+.+.... .....+++||||++++.++.+++.|.+........ ..-.+..+||+++
T Consensus 406 ~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~--~~~~~~~i~g~~~- 482 (590)
T 3h1t_A 406 EYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRK--HPDYVARVTSEEG- 482 (590)
T ss_dssp ---CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTT--CTTSEEECSSTTH-
T ss_pred cCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhcc--CCCeEEEEeCCCh-
Confidence 0000 011111222211 22456899999999999999999998764321110 1223677899976
Q ss_pred HHHhhccCCCCCCCcE---EEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCC
Q 005291 260 EMQVRVFSPPPPNCRR---FIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR 336 (704)
Q Consensus 260 ~~r~~v~~~~~~g~~k---IlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~ 336 (704)
++|.++++.|++|..+ |+|||+++++|+|+|++++||... .+-|...|+||+||+||.+
T Consensus 483 ~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~------------------~~~s~~~~~Q~iGR~~R~~ 544 (590)
T 3h1t_A 483 KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLAR------------------VVNSMSEFKQIVGRGTRLR 544 (590)
T ss_dssp HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEES------------------CCCCHHHHHHHHTTSCCCB
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEe------------------cCCChHHHHHHHhhhcccC
Confidence 4789999999987766 889999999999999999999732 2457889999999999986
Q ss_pred C
Q 005291 337 P 337 (704)
Q Consensus 337 ~ 337 (704)
+
T Consensus 545 ~ 545 (590)
T 3h1t_A 545 E 545 (590)
T ss_dssp G
T ss_pred c
Confidence 5
No 53
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.93 E-value=2.8e-25 Score=253.56 Aligned_cols=308 Identities=15% Similarity=0.096 Sum_probs=184.7
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH-HHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHH---HHHhCCccCcee
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEEV 81 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKT-t~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rv---a~~~~~~vg~~v 81 (704)
-++.|...+..+.+|+ +..++||+||| +++.+++.... .+..++|+.|++.||.|.++.+ .+.+|..++..+
T Consensus 75 p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l--~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~ 150 (853)
T 2fsf_A 75 HFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL--TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINL 150 (853)
T ss_dssp CCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT--TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred CChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH--cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3567777778888888 88999999999 44333333222 2457899999999999988765 455677666555
Q ss_pred eeeeecccccCcccceEEcchHHH-HHHHHhC-------CCCCCCceEEEeCCCcCCC-CHH--------------HHHH
Q 005291 82 GYAIRFEDRTSERTLIKYLTDGVL-LREILSN-------PDLSPYSVIILDEAHERSL-NTD--------------ILLG 138 (704)
Q Consensus 82 g~~~~~~~~~~~~~~I~~~T~g~L-l~~l~~~-------~~l~~~~~IIiDEaHer~l-~~d--------------~l~~ 138 (704)
|............++|+|+|||.| ..++... ..++++.++||||||. .+ +.. .+..
T Consensus 151 GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~-mLiD~a~tpLIiSg~~~~~~~~y~ 229 (853)
T 2fsf_A 151 PGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDS-ILIDEARTPLIISGPAEDSSEMYK 229 (853)
T ss_dssp TTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHH-HTTTTTTCEEEEEEC---------
T ss_pred CCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHH-HHHhcCcccccccCCCccchhHHH
Confidence 522111112223579999999999 5666433 3568899999999994 44 321 0111
Q ss_pred HHHHHHHHhcc--------------------CcEEE------------------------EEecCCCh--HHHh------
Q 005291 139 LVKRLVNLRAS--------------------KLKIL------------------------ITSATLDG--EKVS------ 166 (704)
Q Consensus 139 llk~l~~~~~~--------------------~~kiI------------------------~~SATl~~--~~~~------ 166 (704)
.+..+....+. +.++. ++|||.+. ..+.
T Consensus 230 ~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~ 309 (853)
T 2fsf_A 230 RVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAH 309 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHH
Confidence 12222222211 12222 67887532 0110
Q ss_pred cccC--------CCCcccc--------CCCcC---------------------c-eeEEe--------------------
Q 005291 167 KFFS--------NCPTLNV--------PGKLY---------------------P-VEILH-------------------- 188 (704)
Q Consensus 167 ~~~~--------~~~~i~i--------~~~~~---------------------p-v~~~~-------------------- 188 (704)
.+|. +..++.+ +|+.+ . -.+.|
T Consensus 310 ~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te 389 (853)
T 2fsf_A 310 ALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTE 389 (853)
T ss_dssp -----------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCC
T ss_pred HHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhH
Confidence 1110 0000000 00000 0 00110
Q ss_pred --------------cCC---------CCcc--hHHHHHHHHHHHHc--cCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcC
Q 005291 189 --------------SKE---------RPTS--YLESALKTAIDIHV--REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLD 241 (704)
Q Consensus 189 --------------~~~---------~~~~--~~~~~~~~~~~i~~--~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~ 241 (704)
.+. +..- ........+..... ...+.++||||++++.++.+++.|.+.
T Consensus 390 ~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~----- 464 (853)
T 2fsf_A 390 AFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKA----- 464 (853)
T ss_dssp HHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHC-----
Confidence 000 0000 11223333333221 234568999999999999999999875
Q ss_pred CCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCC------------------------------
Q 005291 242 EGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDG------------------------------ 291 (704)
Q Consensus 242 ~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~------------------------------ 291 (704)
++....+||.+...++..+.+.++.| .|+||||+|++|+||+.
T Consensus 465 -----gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (853)
T 2fsf_A 465 -----GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRH 537 (853)
T ss_dssp -----TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHH
T ss_pred -----CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhh
Confidence 77788899999888888888999988 69999999999999987
Q ss_pred --e-----EEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCcc
Q 005291 292 --V-----VYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (704)
Q Consensus 292 --v-----~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~ 348 (704)
| .+||++.+ |.|...+.||+||+||. .||.+..+.+.++
T Consensus 538 ~~V~~~GGl~VI~te~------------------pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 538 DAVLEAGGLHIIGTER------------------HESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHTTSEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hHHHhcCCcEEEEccC------------------CCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 4 69998654 66888999999999999 7899988887665
No 54
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.92 E-value=1.3e-24 Score=248.29 Aligned_cols=307 Identities=19% Similarity=0.157 Sum_probs=201.4
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHH-HH-HHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHH---HHHhCCccCce
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEE 80 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKT-t~-l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rv---a~~~~~~vg~~ 80 (704)
-++.|...+..+.+|+ |..++||+||| ++ +|.++... .+..++|+.|++.||.+.++.+ .+.+|+.++..
T Consensus 112 P~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL---~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i 186 (922)
T 1nkt_A 112 PFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL---AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVI 186 (922)
T ss_dssp CCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT---TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH---hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 3567777788888887 88999999999 33 44444333 2457999999999999888765 45567766655
Q ss_pred eeeeeecccccCcccceEEcchHHH-HHHHHhC-------CCCCCCceEEEeCCCcCCC-C---------------HHHH
Q 005291 81 VGYAIRFEDRTSERTLIKYLTDGVL-LREILSN-------PDLSPYSVIILDEAHERSL-N---------------TDIL 136 (704)
Q Consensus 81 vg~~~~~~~~~~~~~~I~~~T~g~L-l~~l~~~-------~~l~~~~~IIiDEaHer~l-~---------------~d~l 136 (704)
+|............++|+|+|||.| ..++... ..++.+.++|||||| +.+ | +++.
T Consensus 187 ~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaD-smLiDeartPLiiSg~~~~~~~~y 265 (922)
T 1nkt_A 187 LATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVD-SILIDEARTPLIISGPADGASNWY 265 (922)
T ss_dssp CTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHH-HHHTTGGGSCEEEEEECCCCHHHH
T ss_pred eCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChH-HHHHhcCccceeecCCCCcchhHH
Confidence 5522111112223579999999998 5555433 357889999999999 444 4 2333
Q ss_pred HHHHHHHHHHhc---------cCcEEE-----------------EEecCCCh--HHHh------cccC--------CCCc
Q 005291 137 LGLVKRLVNLRA---------SKLKIL-----------------ITSATLDG--EKVS------KFFS--------NCPT 174 (704)
Q Consensus 137 ~~llk~l~~~~~---------~~~kiI-----------------~~SATl~~--~~~~------~~~~--------~~~~ 174 (704)
..+..+....+ ++.+++ ++|||.+. ..+. .+|. +..+
T Consensus 266 -~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~v 344 (922)
T 1nkt_A 266 -TEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEV 344 (922)
T ss_dssp -HHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCE
T ss_pred -HHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCce
Confidence 33555555554 366777 78999752 1111 1111 1111
Q ss_pred ccc--------CCCcC--------------------------------------------------------ceeEEecC
Q 005291 175 LNV--------PGKLY--------------------------------------------------------PVEILHSK 190 (704)
Q Consensus 175 i~i--------~~~~~--------------------------------------------------------pv~~~~~~ 190 (704)
+.+ +|+.+ .+++...+
T Consensus 345 viVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IP 424 (922)
T 1nkt_A 345 LIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIP 424 (922)
T ss_dssp EEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECC
T ss_pred EEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeC
Confidence 101 11110 00000000
Q ss_pred CC---------Ccch--HHHHHHHHHHHHc--cCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCC
Q 005291 191 ER---------PTSY--LESALKTAIDIHV--REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSL 257 (704)
Q Consensus 191 ~~---------~~~~--~~~~~~~~~~i~~--~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l 257 (704)
.. ..-| .......++.... ...+.++|||+++++.++.+++.|.+. ++....+||.+
T Consensus 425 tn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~----------Gi~~~vLnak~ 494 (922)
T 1nkt_A 425 TNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKR----------RIPHNVLNAKY 494 (922)
T ss_dssp CSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHT----------TCCCEEECSSC
T ss_pred CCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC----------CCCEEEecCCh
Confidence 00 0000 1222333332221 123458999999999999999999875 77788899999
Q ss_pred CHHHHhhccCCCCCCCcEEEEEcccccccccCCCe---------------------------------------------
Q 005291 258 PPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGV--------------------------------------------- 292 (704)
Q Consensus 258 ~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v--------------------------------------------- 292 (704)
...++..+.+.++.| .|+||||+|++|+||+.+
T Consensus 495 ~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (922)
T 1nkt_A 495 HEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAK 572 (922)
T ss_dssp HHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhh
Confidence 888888888888887 699999999999999974
Q ss_pred -------EEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccc
Q 005291 293 -------VYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (704)
Q Consensus 293 -------~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~ 349 (704)
.+||++.+ |.|...+.||+||+||. .||.+..+.+.++.
T Consensus 573 ~V~~~GGlhVI~te~------------------pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 573 EVIEAGGLYVLGTER------------------HESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHTTSEEEEECSC------------------CSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHhcCCcEEEeccC------------------CCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 59998554 66888999999999999 78999888876543
No 55
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=2.1e-25 Score=221.80 Aligned_cols=173 Identities=20% Similarity=0.247 Sum_probs=148.7
Q ss_pred HHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEc
Q 005291 201 LKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVST 280 (704)
Q Consensus 201 ~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaT 280 (704)
+..+.++.....++++||||+++.+++.+++.|.+. ++.+.++||+|+.++|.++++.|++|..+|||||
T Consensus 19 ~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT 88 (212)
T 3eaq_A 19 LEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL----------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT 88 (212)
T ss_dssp HHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH----------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC
T ss_pred HHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc----------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 334444444556789999999999999999999875 7789999999999999999999999999999999
Q ss_pred ccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCcc-----------
Q 005291 281 NIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV----------- 348 (704)
Q Consensus 281 niae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~----------- 348 (704)
+++++|+|+|++++||++|+ |.|..+|.||+|||||. ++|.||.+|+..+
T Consensus 89 ~~~~~Gidi~~v~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~ 150 (212)
T 3eaq_A 89 DVAARGLDIPQVDLVVHYRL------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAV 150 (212)
T ss_dssp TTTTCSSSCCCBSEEEESSC------------------CSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHH
T ss_pred ChhhcCCCCccCcEEEECCC------------------CcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHh
Confidence 99999999999999999664 56889999999999999 5899999999877
Q ss_pred ---ccccCCCCCCCccccCChHHHHHhhcccCccccccccc-----cCCCCCCHHHHHHHHHHH
Q 005291 349 ---YHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKF-----DFLDPPSSESLEDALKQL 404 (704)
Q Consensus 349 ---~~~~~~~~~~pei~r~~l~~~~L~l~~l~~~~~~~~~~-----~~~~~P~~~~l~~al~~L 404 (704)
+.. +.....|||.+..+..+++.++.++..+ ...| +|+++|+++.+..|+..|
T Consensus 151 ~~~~~~-~~~~~~~ei~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 151 GRRFKR-VNPPTPEEVLEAKWRHLLARLARVPEKD--YRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp SSCCEE-CCCCCHHHHHHHHHHHHHHHHTTSCHHH--HTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCcCee-cCCCCHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 444 6677788999999999999999988765 4445 678999999999998876
No 56
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=9.6e-25 Score=227.61 Aligned_cols=174 Identities=18% Similarity=0.217 Sum_probs=147.4
Q ss_pred HHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEccccc
Q 005291 205 IDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAE 284 (704)
Q Consensus 205 ~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae 284 (704)
.++.....++++||||+++++++.+++.|.+. ++.+.++||+|++.+|.++++.|++|.++||||||+++
T Consensus 20 ~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~----------g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~ 89 (300)
T 3i32_A 20 SDLLYVASPDRAMVFTRTKAETEEIAQGLLRL----------GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAA 89 (300)
T ss_dssp HHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT----------TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTT
T ss_pred HHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC----------CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhh
Confidence 33333344789999999999999999998764 78899999999999999999999999999999999999
Q ss_pred ccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCcc--------------c
Q 005291 285 TSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV--------------Y 349 (704)
Q Consensus 285 ~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~--------------~ 349 (704)
+|+|+|++++||++|+ |.|..+|.||+|||||. ++|.||.+|+..+ +
T Consensus 90 ~Gidi~~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~ 151 (300)
T 3i32_A 90 RGLDIPQVDLVVHYRM------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 151 (300)
T ss_dssp CSTTCCCCSEEEESSC------------------CSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCC
T ss_pred cCccccceeEEEEcCC------------------CCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcc
Confidence 9999999999999765 45778899999999999 5899999999887 4
Q ss_pred cccCCCCCCCccccCChHHHHHhhcccCccccccccc-----cCCCCCCHHHHHHHHHHHHHccc
Q 005291 350 HDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKF-----DFLDPPSSESLEDALKQLYLIDA 409 (704)
Q Consensus 350 ~~~~~~~~~pei~r~~l~~~~L~l~~l~~~~~~~~~~-----~~~~~P~~~~l~~al~~L~~lga 409 (704)
.. +...+.|||.+.++..++++++.++..+ ...| +|+++|+.+.+..|+..|.....
T Consensus 152 ~~-~~~~~~~ei~~~~~~~~~~~l~~~~~~~--~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 152 KR-VNPPTPEEVLEAKWRHLLARLARVPEKD--YRLYQDFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp EE-CCCCCHHHHHHHHHHHHHHHHTTSCHHH--HHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred eE-eCCCCHHHHHHHHHHHHHHHHHhcchhh--HHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 44 7777888999999999999999887655 5555 67888999999999999976654
No 57
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.90 E-value=7.5e-24 Score=254.77 Aligned_cols=313 Identities=13% Similarity=0.138 Sum_probs=200.3
Q ss_pred CCchHHHHHHHHHhcc--CCEEEEEcCCCCcHHHHHHHHHHhcC-CCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCce
Q 005291 4 LPILQYEETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (704)
Q Consensus 4 LPi~~~~~~il~~l~~--~~~vii~gpTGsGKTt~l~~~l~~~~-~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~ 80 (704)
..+++||.+++..+.. +..+++.++||+|||.+...++.... ....+++++++|+ .++.|....+.+.++..+...
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~ 230 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALF 230 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEEC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEE
Confidence 4578999999987765 44889999999999955544443322 2234589999999 888999999988887664332
Q ss_pred eeeeee----cccccCcccceEEcchHHHHHHHHh--CCCCCCCceEEEeCCCcCCCCHH----HHHHHHHHHHHHhccC
Q 005291 81 VGYAIR----FEDRTSERTLIKYLTDGVLLREILS--NPDLSPYSVIILDEAHERSLNTD----ILLGLVKRLVNLRASK 150 (704)
Q Consensus 81 vg~~~~----~~~~~~~~~~I~~~T~g~Ll~~l~~--~~~l~~~~~IIiDEaHer~l~~d----~l~~llk~l~~~~~~~ 150 (704)
.|.... .........+|+++|.+.+.+.... .....++++||+||+|. .-+.. .....++.+. ...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~-~kn~~~~~s~~~~~l~~L~---~~~ 306 (968)
T 3dmq_A 231 DDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHH-LVWSEDAPSREYQAIEQLA---EHV 306 (968)
T ss_dssp CHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSC-CCCBTTBCCHHHHHHHHHH---TTC
T ss_pred ccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHh-hcCCCCcchHHHHHHHHHh---hcC
Confidence 221100 0011223568999999888542100 01234789999999995 33221 1123333332 224
Q ss_pred cEEEEEecCCChHHHh------ccc-----CCC------------------------C-----------cc---------
Q 005291 151 LKILITSATLDGEKVS------KFF-----SNC------------------------P-----------TL--------- 175 (704)
Q Consensus 151 ~kiI~~SATl~~~~~~------~~~-----~~~------------------------~-----------~i--------- 175 (704)
.++++||||+-..... .++ ++. + .+
T Consensus 307 ~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~ 386 (968)
T 3dmq_A 307 PGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLL 386 (968)
T ss_dssp SSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTG
T ss_pred CcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHH
Confidence 5699999998321110 000 000 0 00
Q ss_pred -cc----------------------------------CCCcCceeEEe---cCCCCcch---------------------
Q 005291 176 -NV----------------------------------PGKLYPVEILH---SKERPTSY--------------------- 196 (704)
Q Consensus 176 -~i----------------------------------~~~~~pv~~~~---~~~~~~~~--------------------- 196 (704)
.. ....+|....+ ... ...+
T Consensus 387 ~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (968)
T 3dmq_A 387 QAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPL-PTQYQTAIKVSGIMGARKSAEDRAR 465 (968)
T ss_dssp GGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECC-CHHHHHHHHHHHHTTCCSSGGGGTH
T ss_pred hcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCC-CHHHHHHHHHHhhhhhhhhhHHHHh
Confidence 00 00001100000 000 0000
Q ss_pred ---------------------HHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccC
Q 005291 197 ---------------------LESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHG 255 (704)
Q Consensus 197 ---------------------~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~ 255 (704)
.......+..+.....++++||||+++..++.+++.|.+. .++.+..+||
T Consensus 466 ~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~---------~g~~~~~lhG 536 (968)
T 3dmq_A 466 DMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER---------EGIRAAVFHE 536 (968)
T ss_dssp HHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT---------TCCCEEEECT
T ss_pred hhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH---------cCCcEEEEeC
Confidence 0122344444444467789999999999999999999754 2778999999
Q ss_pred CCCHHHHhhccCCCCCCC--cEEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccC
Q 005291 256 SLPPEMQVRVFSPPPPNC--RRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAG 333 (704)
Q Consensus 256 ~l~~~~r~~v~~~~~~g~--~kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaG 333 (704)
+|+..+|.++++.|++|. .+|||||+++++|+|+|++++||+.+. |.+...+.||+||+|
T Consensus 537 ~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~------------------p~~~~~~~Q~~GR~~ 598 (968)
T 3dmq_A 537 GMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDL------------------PFNPDLLEQRIGRLD 598 (968)
T ss_dssp TSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSC------------------CSSHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecC------------------CCCHHHHHHHhhccc
Confidence 999999999999999998 999999999999999999999997332 457788999999999
Q ss_pred CCC-Cc--eEEEecCCccc
Q 005291 334 RTR-PG--KCYRLYPSTVY 349 (704)
Q Consensus 334 R~~-~G--~c~~L~~~~~~ 349 (704)
|.+ .| .+|+++.+...
T Consensus 599 R~Gq~~~v~v~~~~~~~t~ 617 (968)
T 3dmq_A 599 RIGQAHDIQIHVPYLEKTA 617 (968)
T ss_dssp CSSSCSCCEEEEEEETTSH
T ss_pred cCCCCceEEEEEecCCChH
Confidence 983 34 45666655544
No 58
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.87 E-value=1.2e-21 Score=234.22 Aligned_cols=305 Identities=11% Similarity=0.031 Sum_probs=189.9
Q ss_pred chHHHHHHHHHhcc--------------CCEEEEEcCCCCcHHHHHHHHHHhcCC-CCCcEEEEcchhhHHHHHHHHHHH
Q 005291 6 ILQYEETIVETVEQ--------------NPVVVVIGETGSGKSTQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVA 70 (704)
Q Consensus 6 i~~~~~~il~~l~~--------------~~~vii~gpTGsGKTt~l~~~l~~~~~-~~~~~ilv~~P~r~la~~~a~rva 70 (704)
.+.+|.+.++.+.. ++..++.++||||||..+..++..... ....++++++||+.|+.|+.+.+.
T Consensus 272 ~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f~ 351 (1038)
T 2w00_A 272 MRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEYQ 351 (1038)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHHH
Confidence 46788887776643 357899999999999443333332221 223589999999999999988876
Q ss_pred HHhCCccCceeeeeee-cccc-cCcccceEEcchHHHHHHHHhC---CCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHH
Q 005291 71 QELGVRLGEEVGYAIR-FEDR-TSERTLIKYLTDGVLLREILSN---PDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (704)
Q Consensus 71 ~~~~~~vg~~vg~~~~-~~~~-~~~~~~I~~~T~g~Ll~~l~~~---~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~ 145 (704)
......+.. +.... .... .....+|+|+|++.|...+... +.+....+||+|||| |+...+ ..+.+..
T Consensus 352 ~f~~~~v~~--~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAH-rs~~~~----~~~~I~~ 424 (1038)
T 2w00_A 352 RFSPDSVNG--SENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECH-RSQFGE----AQKNLKK 424 (1038)
T ss_dssp TTSTTCSSS--SCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCC-TTHHHH----HHHHHHH
T ss_pred Hhccccccc--ccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccc-hhcchH----HHHHHHH
Confidence 533222111 00000 0001 1235789999999998876543 245678999999999 665433 2445555
Q ss_pred HhccCcEEEEEecCCCh-------HHHhcccCCCCcccc-------CCCcCceeEEecCCCC------------------
Q 005291 146 LRASKLKILITSATLDG-------EKVSKFFSNCPTLNV-------PGKLYPVEILHSKERP------------------ 193 (704)
Q Consensus 146 ~~~~~~kiI~~SATl~~-------~~~~~~~~~~~~i~i-------~~~~~pv~~~~~~~~~------------------ 193 (704)
..+ +.+++++|||+.. .....+|++. +... .|-..|+.+.|....+
T Consensus 425 ~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~-i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~ 502 (1038)
T 2w00_A 425 KFK-RYYQFGFTGTPIFPENALGSETTASVFGRE-LHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAE 502 (1038)
T ss_dssp HCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSE-EEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTC
T ss_pred hCC-cccEEEEeCCccccccchhhhHHHHHhCCe-eEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHH
Confidence 665 7899999999842 2355566542 1110 2344455544432110
Q ss_pred -------cchHHHHHHHHHHHHcc--------CCCCCEEEEeCCHHHHHHHHHHHHHHhhhcC--CCCCCCeEE-EeccC
Q 005291 194 -------TSYLESALKTAIDIHVR--------EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLD--EGSCMDAVI-LPLHG 255 (704)
Q Consensus 194 -------~~~~~~~~~~~~~i~~~--------~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~--~~~~~~~~v-~~lh~ 255 (704)
...+...+..++..... ..++++||||+++..+..+++.|.+...... .+...++.+ ..+||
T Consensus 503 ~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~ 582 (1038)
T 2w00_A 503 NQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSF 582 (1038)
T ss_dssp STTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCC
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeC
Confidence 01111222223222211 1345899999999999999999987653210 000012333 34554
Q ss_pred C----------C----------CHH-----------------------------HHhhccCCCCCCCcEEEEEccccccc
Q 005291 256 S----------L----------PPE-----------------------------MQVRVFSPPPPNCRRFIVSTNIAETS 286 (704)
Q Consensus 256 ~----------l----------~~~-----------------------------~r~~v~~~~~~g~~kIlvaTniae~g 286 (704)
+ + +.. +|..+.+.|++|..+|||+|+++.+|
T Consensus 583 ~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltG 662 (1038)
T 2w00_A 583 AANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTG 662 (1038)
T ss_dssp CC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSS
T ss_pred CCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhC
Confidence 2 2 221 36778888999999999999999999
Q ss_pred ccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCCCc
Q 005291 287 LTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPG 338 (704)
Q Consensus 287 idip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G 338 (704)
+|+|.+.+++ .+ .|.+...++||+||+||..+|
T Consensus 663 fDiP~l~tly-lD------------------kpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 663 FDAPTLNTLF-VD------------------KNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp CCCTTEEEEE-EE------------------SCCCHHHHHHHHHTTCCCCCT
T ss_pred cCcccccEEE-Ec------------------cCCCccceeehhhccCcCCCC
Confidence 9999995543 11 356778899999999999653
No 59
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.87 E-value=3.8e-22 Score=224.53 Aligned_cols=308 Identities=15% Similarity=0.104 Sum_probs=187.0
Q ss_pred chHHHHHHHHHh----ccCCEEEEEcCCCCcHHHHHHHHHHhcC-CCCCcEEEEcchhhHHHHHHHHHHHHHhC-CccCc
Q 005291 6 ILQYEETIVETV----EQNPVVVVIGETGSGKSTQLSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELG-VRLGE 79 (704)
Q Consensus 6 i~~~~~~il~~l----~~~~~vii~gpTGsGKTt~l~~~l~~~~-~~~~~~ilv~~P~r~la~~~a~rva~~~~-~~vg~ 79 (704)
+++||.+.++.+ ..+...++..+||+|||.++..++.... ......+++++|. .++.|..+.+.+... ..+..
T Consensus 38 L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~~~~v~~ 116 (500)
T 1z63_A 38 LRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKFAPHLRFAV 116 (500)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHHCTTSCEEE
T ss_pred chHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHHHCCCceEEE
Confidence 789999988766 4577889999999999965544444332 2234578889995 577888888876542 12111
Q ss_pred eeeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecC
Q 005291 80 EVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (704)
Q Consensus 80 ~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SAT 159 (704)
..| ..........+|+++|++.+.+... ....++++||+||||. .-+... ...+.+. ..+ ..+.+++|||
T Consensus 117 ~~g---~~~~~~~~~~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH~-~kn~~~--~~~~~l~-~l~-~~~~l~LTaT 186 (500)
T 1z63_A 117 FHE---DRSKIKLEDYDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQN-IKNPQT--KIFKAVK-ELK-SKYRIALTGT 186 (500)
T ss_dssp CSS---STTSCCGGGSSEEEEEHHHHTTCHH--HHTCCEEEEEEETGGG-GSCTTS--HHHHHHH-TSC-EEEEEEECSS
T ss_pred Eec---CchhccccCCcEEEeeHHHHhccch--hcCCCcCEEEEeCccc-cCCHhH--HHHHHHH-hhc-cCcEEEEecC
Confidence 111 1111222457899999998875432 1234689999999994 433221 1112222 223 4578999999
Q ss_pred CChHHHhcc------cC---------------------------------CCCccccCC------CcCceeE---EecCC
Q 005291 160 LDGEKVSKF------FS---------------------------------NCPTLNVPG------KLYPVEI---LHSKE 191 (704)
Q Consensus 160 l~~~~~~~~------~~---------------------------------~~~~i~i~~------~~~pv~~---~~~~~ 191 (704)
+-...+.++ +. ...++.... ...|... .+...
T Consensus 187 P~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l 266 (500)
T 1z63_A 187 PIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNL 266 (500)
T ss_dssp CSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECC
T ss_pred CCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCC
Confidence 833221111 10 000110000 0111111 11110
Q ss_pred CCc--c-hH------------------------------------------------HHHHHHHHHHHc--cCCCCCEEE
Q 005291 192 RPT--S-YL------------------------------------------------ESALKTAIDIHV--REPEGDVLI 218 (704)
Q Consensus 192 ~~~--~-~~------------------------------------------------~~~~~~~~~i~~--~~~~g~iLV 218 (704)
.+. . |. ...+..+.++.. ...+.++||
T Consensus 267 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lv 346 (500)
T 1z63_A 267 TPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAI 346 (500)
T ss_dssp CHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEE
Confidence 000 0 00 001111111111 135679999
Q ss_pred EeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCC-CcE-EEEEcccccccccCCCeEEEE
Q 005291 219 FMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN-CRR-FIVSTNIAETSLTVDGVVYVI 296 (704)
Q Consensus 219 Fl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g-~~k-IlvaTniae~gidip~v~~VI 296 (704)
|+.....++.+.+.|.... +..+..+||+++..+|.++++.|++| ..+ +|+||+++++|+|++++++||
T Consensus 347 F~~~~~~~~~l~~~l~~~~---------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi 417 (500)
T 1z63_A 347 FTQFVDMGKIIRNIIEKEL---------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI 417 (500)
T ss_dssp ECSCHHHHHHHHHHHHHHH---------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEE
T ss_pred EEehHHHHHHHHHHHHHhh---------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEE
Confidence 9999999999999998752 56677899999999999999999887 444 899999999999999999999
Q ss_pred eCCccccccccCCCCccccccccccHHhHHhhccccCCCC---CceEEEecCCccccc
Q 005291 297 DCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHD 351 (704)
Q Consensus 297 d~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~---~G~c~~L~~~~~~~~ 351 (704)
..+. |-+.+.+.||+||++|.+ +..+|+|+++...+.
T Consensus 418 ~~d~------------------~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee 457 (500)
T 1z63_A 418 HFDR------------------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 457 (500)
T ss_dssp ESSC------------------CSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHH
T ss_pred EeCC------------------CCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHH
Confidence 7332 345566779999999973 446788888766544
No 60
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.83 E-value=3.9e-19 Score=205.37 Aligned_cols=115 Identities=18% Similarity=0.101 Sum_probs=101.5
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCC
Q 005291 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDG 291 (704)
Q Consensus 212 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~ 291 (704)
.++++|||++++..++.+++.|.+. ++.+..+||+++..+|.++++.|++|..+|+|||+++++|+|+|+
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~ 507 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPE 507 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCC
Confidence 4579999999999999999999875 677888999999999999999999999999999999999999999
Q ss_pred eEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCCCceEEEecCCccc
Q 005291 292 VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVY 349 (704)
Q Consensus 292 v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~~ 349 (704)
+++||+++..+ ...|.|..+|+||+|||||.++|.|+.+++..+.
T Consensus 508 v~lVI~~d~d~-------------~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 508 VSLVAILDADK-------------EGFLRSERSLIQTIGRAARNARGEVWLYADRVSE 552 (664)
T ss_dssp EEEEEETTTTS-------------CSGGGSHHHHHHHHGGGTTSTTCEEEEECSSCCH
T ss_pred CCEEEEeCCcc-------------cCCCCCHHHHHHHHCccCcCCCCEEEEEEcCCCH
Confidence 99999866322 1226688899999999999999999999876543
No 61
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.82 E-value=3.3e-19 Score=199.65 Aligned_cols=164 Identities=18% Similarity=0.156 Sum_probs=117.2
Q ss_pred cEEEEEecCCChH--HHhcccCCCCccccCCCcCceeE-----EecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCH
Q 005291 151 LKILITSATLDGE--KVSKFFSNCPTLNVPGKLYPVEI-----LHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQ 223 (704)
Q Consensus 151 ~kiI~~SATl~~~--~~~~~~~~~~~i~i~~~~~pv~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~ 223 (704)
.++.+||+|+..+ .|.+.+ +..++.+|...-...+ .|. ...+.....+..+...+ ..+.++|||++++
T Consensus 410 ~kL~GMTGTa~te~~Ef~~iY-~l~vv~IPtnkp~~R~d~~d~vy~--t~~eK~~al~~~I~~~~--~~gqpVLVFt~S~ 484 (822)
T 3jux_A 410 EKLAGMTGTAKTEESEFVQVY-GMEVVVIPTHKPMIRKDHDDLVFR--TQKEKYEKIVEEIEKRY--KKGQPVLVGTTSI 484 (822)
T ss_dssp SEEEEEESSCGGGHHHHHHHS-CCCEEECCCSSCCCCEECCCEEES--SHHHHHHHHHHHHHHHH--HHTCCEEEEESSH
T ss_pred hHHeEECCCCchHHHHHHHHh-CCeEEEECCCCCcceeecCcEEEe--cHHHHHHHHHHHHHHHh--hCCCCEEEEECCH
Confidence 3689999999543 366655 4567777653211111 221 11223333333333332 2356899999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCC--------CeEEE
Q 005291 224 DDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD--------GVVYV 295 (704)
Q Consensus 224 ~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip--------~v~~V 295 (704)
+.++.+++.|.+. ++....+||+....++..+...++.| .|+||||+|++|+||+ |..+|
T Consensus 485 e~sE~Ls~~L~~~----------Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhV 552 (822)
T 3jux_A 485 EKSELLSSMLKKK----------GIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCI 552 (822)
T ss_dssp HHHHHHHHHHHTT----------TCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEE
T ss_pred HHHHHHHHHHHHC----------CCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEE
Confidence 9999999999864 67788899997666666565566655 6999999999999998 77899
Q ss_pred EeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCccc
Q 005291 296 IDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (704)
Q Consensus 296 Id~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~ 349 (704)
|++.+ |.|...+.||+||+||. .||.++.+++.++.
T Consensus 553 Inte~------------------Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 553 IGTER------------------HESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp EESSC------------------CSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred EecCC------------------CCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 98654 66888999999999999 68999988877653
No 62
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.81 E-value=7.3e-19 Score=203.13 Aligned_cols=113 Identities=12% Similarity=0.217 Sum_probs=95.9
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCc---EEEEEcccccccc
Q 005291 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCR---RFIVSTNIAETSL 287 (704)
Q Consensus 211 ~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~---kIlvaTniae~gi 287 (704)
..+.++|||+.....++.+...|... ++.+..+||+++.++|.++++.|.+|.. .+|+||.++++|+
T Consensus 414 ~~~~k~lIFs~~~~~~~~l~~~l~~~----------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Gl 483 (644)
T 1z3i_X 414 TTSDKVVLVSNYTQTLDLFEKLCRNR----------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGL 483 (644)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHH----------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTC
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHC----------CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCc
Confidence 34679999999999999999988765 6778899999999999999999988754 5899999999999
Q ss_pred cCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCCC---CceEEEecCCccccc
Q 005291 288 TVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHD 351 (704)
Q Consensus 288 dip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~~---~G~c~~L~~~~~~~~ 351 (704)
|++++++||..+ + |-+.+.+.|+.||++|.+ +..+|+++++...+.
T Consensus 484 nl~~a~~Vi~~d--------~----------~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe 532 (644)
T 1z3i_X 484 NLIGANRLVMFD--------P----------DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEE 532 (644)
T ss_dssp CCTTEEEEEECS--------C----------CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHH
T ss_pred ccccCCEEEEEC--------C----------CCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHH
Confidence 999999999733 2 557788889999999984 457889988776554
No 63
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=7.5e-19 Score=208.08 Aligned_cols=312 Identities=15% Similarity=0.124 Sum_probs=191.2
Q ss_pred CCchHHHHHHHHHhc----cCCEEEEEcCCCCcHHHHHHHHHHhc--CCCCCcEEEEcchhhHHHHHHHHHHHHHhC-Cc
Q 005291 4 LPILQYEETIVETVE----QNPVVVVIGETGSGKSTQLSQILHRH--GYTKSGIIGVTQPRRVAAVSVARRVAQELG-VR 76 (704)
Q Consensus 4 LPi~~~~~~il~~l~----~~~~vii~gpTGsGKTt~l~~~l~~~--~~~~~~~ilv~~P~r~la~~~a~rva~~~~-~~ 76 (704)
..+++||.+.+..+. .+...++..++|+|||.++..++... .....+.++|++| ..++.+..+.+.+... ..
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 357889999987554 78889999999999996655444322 1123457888889 5567778888866552 22
Q ss_pred cCceeeeeeec--------------ccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHH
Q 005291 77 LGEEVGYAIRF--------------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (704)
Q Consensus 77 vg~~vg~~~~~--------------~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~ 142 (704)
+....|..... ........+|+++|++++.+....- .-.++++||+||||. .-+.... ...
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l-~~~~w~~vIvDEaH~-lkn~~s~---~~~ 388 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAEL-GSIKWQFMAVDEAHR-LKNAESS---LYE 388 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHH-HTSEEEEEEETTGGG-GCCSSSH---HHH
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHH-hcCCcceeehhhhhh-hcCchhH---HHH
Confidence 22222211000 0012235679999999987654211 123578999999994 4222111 111
Q ss_pred HHHHhccCcEEEEEecCCCh---HHH---hcccCCC-----------------------------Cc-cc-----cCCCc
Q 005291 143 LVNLRASKLKILITSATLDG---EKV---SKFFSNC-----------------------------PT-LN-----VPGKL 181 (704)
Q Consensus 143 l~~~~~~~~kiI~~SATl~~---~~~---~~~~~~~-----------------------------~~-i~-----i~~~~ 181 (704)
.+...+ ....+++|||+-. ..+ -.|+... ++ +. +.. .
T Consensus 389 ~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~-~ 466 (800)
T 3mwy_W 389 SLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEK-S 466 (800)
T ss_dssp HHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTT-T
T ss_pred HHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhh-c
Confidence 222223 4567889999821 111 1111100 00 00 000 0
Q ss_pred Ccee---EEecCCCCc--chH-----------------------------------------------------------
Q 005291 182 YPVE---ILHSKERPT--SYL----------------------------------------------------------- 197 (704)
Q Consensus 182 ~pv~---~~~~~~~~~--~~~----------------------------------------------------------- 197 (704)
.|-. +.+...... .+.
T Consensus 467 LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~ 546 (800)
T 3mwy_W 467 LPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTREN 546 (800)
T ss_dssp SCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHH
T ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHH
Confidence 1110 111100000 000
Q ss_pred --------HHHHHHHHHHH--ccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccC
Q 005291 198 --------ESALKTAIDIH--VREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFS 267 (704)
Q Consensus 198 --------~~~~~~~~~i~--~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~ 267 (704)
...+..+..+. ....+.++|||+.....+..+.+.|... ++.+..+||+++..+|.++++
T Consensus 547 ~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~----------g~~~~~i~G~~~~~eR~~~i~ 616 (800)
T 3mwy_W 547 VLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK----------GINFQRLDGTVPSAQRRISID 616 (800)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHH----------TCCCEEESTTSCHHHHHHHHH
T ss_pred HHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhC----------CCCEEEEeCCCCHHHHHHHHH
Confidence 00011111111 1234679999999999999999998765 677889999999999999999
Q ss_pred CCCCCCc---EEEEEcccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC---CCceEE
Q 005291 268 PPPPNCR---RFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCY 341 (704)
Q Consensus 268 ~~~~g~~---kIlvaTniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~---~~G~c~ 341 (704)
.|..+.. .+|+||.+++.|||++++++||..+ + +-+.+...||.||++|. ++..+|
T Consensus 617 ~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D--------~----------~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 678 (800)
T 3mwy_W 617 HFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFD--------S----------DWNPQADLQAMARAHRIGQKNHVMVY 678 (800)
T ss_dssp TTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESS--------C----------CSCSHHHHHHHTTTSCSSCCSCEEEE
T ss_pred HhhCCCCCceEEEEecccccCCCCccccceEEEec--------C----------CCChhhHHHHHHHHHhcCCCceEEEE
Confidence 9988543 5999999999999999999999733 2 34667778999999996 467899
Q ss_pred EecCCccccc
Q 005291 342 RLYPSTVYHD 351 (704)
Q Consensus 342 ~L~~~~~~~~ 351 (704)
+|+++...+.
T Consensus 679 rlv~~~TiEe 688 (800)
T 3mwy_W 679 RLVSKDTVEE 688 (800)
T ss_dssp EEEETTSHHH
T ss_pred EEecCCCHHH
Confidence 9998887665
No 64
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=9.8e-19 Score=168.25 Aligned_cols=129 Identities=16% Similarity=0.235 Sum_probs=105.7
Q ss_pred HHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEE
Q 005291 200 ALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVS 279 (704)
Q Consensus 200 ~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlva 279 (704)
....+..+......+++||||+++..++.++..|.+. ++.+..+||+|++.+|.++++.|++|..+||||
T Consensus 21 K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLva 90 (175)
T 2rb4_A 21 KYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD----------GHQVSLLSGELTVEQRASIIQRFRDGKEKVLIT 90 (175)
T ss_dssp HHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT----------TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 3445555655566789999999999999999999764 678999999999999999999999999999999
Q ss_pred cccccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCcccc
Q 005291 280 TNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (704)
Q Consensus 280 Tniae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~ 350 (704)
|+++++|+|+|++++||+++.+.. +....+..+|.||+|||||. .+|.||.+++..+..
T Consensus 91 T~~~~~Gid~~~~~~Vi~~d~p~~------------~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 150 (175)
T 2rb4_A 91 TNVCARGIDVKQVTIVVNFDLPVK------------QGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELP 150 (175)
T ss_dssp CCSCCTTTCCTTEEEEEESSCCC--------------CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHH
T ss_pred ecchhcCCCcccCCEEEEeCCCCC------------ccccCCHHHHHHHhcccccCCCCceEEEEEccchHH
Confidence 999999999999999999654210 01126889999999999998 689999999876643
No 65
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.76 E-value=1.1e-18 Score=165.96 Aligned_cols=113 Identities=21% Similarity=0.373 Sum_probs=102.0
Q ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccC
Q 005291 210 REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV 289 (704)
Q Consensus 210 ~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidi 289 (704)
...++++||||+++.+++.+++.|.+. ++.+..+||+|+..+|..+++.|++|..+|||||+++++|+|+
T Consensus 32 ~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~ 101 (163)
T 2hjv_A 32 TENPDSCIIFCRTKEHVNQLTDELDDL----------GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDI 101 (163)
T ss_dssp HHCCSSEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCC
T ss_pred hcCCCcEEEEECCHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCch
Confidence 345679999999999999999999875 6789999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCcccc
Q 005291 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (704)
Q Consensus 290 p~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~ 350 (704)
|++++||+++. |.|..+|.||+||+||. ++|.|+.+++..+..
T Consensus 102 ~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 145 (163)
T 2hjv_A 102 ENISLVINYDL------------------PLEKESYVHRTGRTGRAGNKGKAISFVTAFEKR 145 (163)
T ss_dssp SCCSEEEESSC------------------CSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHH
T ss_pred hcCCEEEEeCC------------------CCCHHHHHHhccccCcCCCCceEEEEecHHHHH
Confidence 99999998553 56888999999999999 689999999876543
No 66
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=173.54 Aligned_cols=165 Identities=18% Similarity=0.146 Sum_probs=112.1
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhcCC-------CCCcEEEEcchhhHHHHHHHHHHHHHhC--C
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHGY-------TKSGIIGVTQPRRVAAVSVARRVAQELG--V 75 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt-~l~~~l~~~~~-------~~~~~ilv~~P~r~la~~~a~rva~~~~--~ 75 (704)
.+++|.++++.+.+|+++++++|||||||. ++.+++..... ..+.+++++.|+++++.|+++++.+... .
T Consensus 43 ~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 122 (228)
T 3iuy_A 43 PTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGL 122 (228)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTC
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCc
Confidence 578999999999999999999999999993 33333332211 2455789999999999999999877532 2
Q ss_pred ccCceeeeeeeccc--ccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcE
Q 005291 76 RLGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (704)
Q Consensus 76 ~vg~~vg~~~~~~~--~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~k 152 (704)
.+....|.....+. ....+.+|+|+|++.+.+.+.... .+.++++||+|||| +..+.++... +..++...+++.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~~-~~~i~~~~~~~~~ 200 (228)
T 3iuy_A 123 KSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEAD-KMLDMEFEPQ-IRKILLDVRPDRQ 200 (228)
T ss_dssp CEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHH-HHHHTTCHHH-HHHHHHHSCSSCE
T ss_pred eEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHH-HHhccchHHH-HHHHHHhCCcCCe
Confidence 22222221111110 112346899999999999886654 58899999999999 4443333333 4455555555899
Q ss_pred EEEEecCCChHH---HhcccCCC
Q 005291 153 ILITSATLDGEK---VSKFFSNC 172 (704)
Q Consensus 153 iI~~SATl~~~~---~~~~~~~~ 172 (704)
+++||||++.+. ...++.++
T Consensus 201 ~l~~SAT~~~~~~~~~~~~l~~p 223 (228)
T 3iuy_A 201 TVMTSATWPDTVRQLALSYLKDP 223 (228)
T ss_dssp EEEEESCCCHHHHHHHHTTCSSC
T ss_pred EEEEEeeCCHHHHHHHHHHCCCC
Confidence 999999998653 44555443
No 67
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.76 E-value=1e-18 Score=166.41 Aligned_cols=118 Identities=20% Similarity=0.327 Sum_probs=100.2
Q ss_pred HHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEccccc
Q 005291 205 IDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAE 284 (704)
Q Consensus 205 ~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae 284 (704)
..+....+.+++|||+++++.++.++..|.+. ++.+..+||+|+..+|.++++.|++|..+|||||++++
T Consensus 22 ~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 91 (165)
T 1fuk_A 22 TDLYDSISVTQAVIFCNTRRKVEELTTKLRND----------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLA 91 (165)
T ss_dssp HHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGT
T ss_pred HHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----------CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhh
Confidence 33333446789999999999999999999874 67899999999999999999999999999999999999
Q ss_pred ccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCcccc
Q 005291 285 TSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (704)
Q Consensus 285 ~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~ 350 (704)
+|+|+|++++||+++. |.|..+|.||+||+||. ++|.||.+++..+..
T Consensus 92 ~G~d~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 140 (165)
T 1fuk_A 92 RGIDVQQVSLVINYDL------------------PANKENYIHRIGRGGRFGRKGVAINFVTNEDVG 140 (165)
T ss_dssp TTCCCCSCSEEEESSC------------------CSSGGGGGGSSCSCC-----CEEEEEEETTTHH
T ss_pred cCCCcccCCEEEEeCC------------------CCCHHHHHHHhcccccCCCCceEEEEEcchHHH
Confidence 9999999999999553 45777888999999999 689999999877653
No 68
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.75 E-value=3.4e-18 Score=171.04 Aligned_cols=176 Identities=18% Similarity=0.201 Sum_probs=117.8
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHH-HHHHHHhcCC-CCCcEEEEcchhhHHHHHHHHHHHHHh---CCccCc
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQEL---GVRLGE 79 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKTt~-l~~~l~~~~~-~~~~~ilv~~P~r~la~~~a~rva~~~---~~~vg~ 79 (704)
..+++|.++++.+.+++++++.+|||||||.. +..++..... ..+.+++++.|+++++.|+++.+.... +..++.
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 115 (224)
T 1qde_A 36 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHA 115 (224)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEE
Confidence 35789999999999999999999999999954 4444443322 335689999999999999999886644 233333
Q ss_pred eeeeeeecc-cccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEe
Q 005291 80 EVGYAIRFE-DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (704)
Q Consensus 80 ~vg~~~~~~-~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~S 157 (704)
..|.....+ .......+|+++|++.+.+.+.... .+.++++||+|||| +..+.++. ..+..+....+.+.++++||
T Consensus 116 ~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah-~~~~~~~~-~~l~~i~~~~~~~~~~i~lS 193 (224)
T 1qde_A 116 CIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD-EMLSSGFK-EQIYQIFTLLPPTTQVVLLS 193 (224)
T ss_dssp ECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH-HHHHTTCH-HHHHHHHHHSCTTCEEEEEE
T ss_pred EeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh-HHhhhhhH-HHHHHHHHhCCccCeEEEEE
Confidence 333221111 1112347899999999998886543 67889999999999 33333333 33455555555589999999
Q ss_pred cCCChHH---HhcccCCCCccccCCCcC
Q 005291 158 ATLDGEK---VSKFFSNCPTLNVPGKLY 182 (704)
Q Consensus 158 ATl~~~~---~~~~~~~~~~i~i~~~~~ 182 (704)
||++.+. +..|+.++..+.+++...
T Consensus 194 AT~~~~~~~~~~~~~~~p~~i~~~~~~~ 221 (224)
T 1qde_A 194 ATMPNDVLEVTTKFMRNPVRILVKKDEL 221 (224)
T ss_dssp SSCCHHHHHHHHHHCSSCEEEC------
T ss_pred eecCHHHHHHHHHHCCCCEEEEecCCcc
Confidence 9998743 567777766666655433
No 69
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.75 E-value=2e-18 Score=199.42 Aligned_cols=171 Identities=17% Similarity=0.132 Sum_probs=122.6
Q ss_pred CcEEEEEecCCChHHHhcccCCC--CccccCCCcCceeEEecCCCCcchHHHHHHHHHHHHccCCCCCEEEEeCCHHHHH
Q 005291 150 KLKILITSATLDGEKVSKFFSNC--PTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIE 227 (704)
Q Consensus 150 ~~kiI~~SATl~~~~~~~~~~~~--~~i~i~~~~~pv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~ 227 (704)
..+++++|||++...+.. -+.. ..+...+...|. +.... ........+..+.... ..++++||||+++..++
T Consensus 386 ~~q~i~~SAT~~~~~~~~-~~~~~~~~~r~~~l~~p~-i~v~~--~~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ae 459 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH-TDEMVEQIIRPTGLLDPL-IDVRP--IEGQIDDLIGEIQARI--ERNERVLVTTLTKKMSE 459 (661)
T ss_dssp CSEEEEECSSCCHHHHHH-CSSCEEECCCTTCCCCCE-EEEEC--STTHHHHHHHHHHHHH--TTTCEEEEECSSHHHHH
T ss_pred CCCEEEEecCCChhHHHh-hhCeeeeeecccCCCCCe-EEEec--ccchHHHHHHHHHHHH--hcCCeEEEEECCHHHHH
Confidence 678999999997654331 0000 001111222332 11111 1122233333322221 34579999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCcccccccc
Q 005291 228 KLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYN 307 (704)
Q Consensus 228 ~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~~k~~~~~ 307 (704)
.+++.|.+. ++.+..+||+++..+|.++++.|++|..+|+|||+++++|+|+|++++||+++..+
T Consensus 460 ~L~~~L~~~----------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~----- 524 (661)
T 2d7d_A 460 DLTDYLKEI----------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADK----- 524 (661)
T ss_dssp HHHHHHHHT----------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTC-----
T ss_pred HHHHHHHhc----------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCccc-----
Confidence 999999875 67788899999999999999999999999999999999999999999999865422
Q ss_pred CCCCccccccccccHHhHHhhccccCCCCCceEEEecCCccc
Q 005291 308 PSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVY 349 (704)
Q Consensus 308 ~~~g~~~l~~~~iS~~~~~QR~GRaGR~~~G~c~~L~~~~~~ 349 (704)
...|.|..+|+||+|||||..+|.|+.++++.+.
T Consensus 525 --------~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 525 --------EGFLRSERSLIQTIGRAARNAEGRVIMYADKITK 558 (661)
T ss_dssp --------CTTTTSHHHHHHHHHTTTTSTTCEEEEECSSCCH
T ss_pred --------ccCCCCHHHHHHHhCcccCCCCCEEEEEEeCCCH
Confidence 1126688899999999999999999999877543
No 70
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.75 E-value=1.3e-17 Score=164.48 Aligned_cols=165 Identities=20% Similarity=0.201 Sum_probs=116.0
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhcCC-CCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceee
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKTt-~l~~~l~~~~~-~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg 82 (704)
..+++|.++++.+.+++++++.+|||||||. ++..++..... ..+.+++++.|+++++.|+++.+.+......+..++
T Consensus 25 ~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 104 (206)
T 1vec_A 25 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVM 104 (206)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEE
T ss_pred CCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEE
Confidence 3578999999999999999999999999994 33334433322 234589999999999999999887665322122222
Q ss_pred eeeeccc------ccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEE
Q 005291 83 YAIRFED------RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (704)
Q Consensus 83 ~~~~~~~------~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~ 155 (704)
....... ......+|+++|++.+.+.+.... .+.++++||+||||+ ..+.++. ..+..+....+++.++++
T Consensus 105 ~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~-~~~~~~~-~~l~~i~~~~~~~~~~l~ 182 (206)
T 1vec_A 105 ATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK-LLSQDFV-QIMEDIILTLPKNRQILL 182 (206)
T ss_dssp EECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH-HTSTTTH-HHHHHHHHHSCTTCEEEE
T ss_pred EEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH-hHhhCcH-HHHHHHHHhCCccceEEE
Confidence 1111111 112457899999999988886544 688999999999994 4444443 345666666655899999
Q ss_pred EecCCChHH---HhcccCC
Q 005291 156 TSATLDGEK---VSKFFSN 171 (704)
Q Consensus 156 ~SATl~~~~---~~~~~~~ 171 (704)
||||++.+. +..++.+
T Consensus 183 ~SAT~~~~~~~~~~~~l~~ 201 (206)
T 1vec_A 183 YSATFPLSVQKFMNSHLEK 201 (206)
T ss_dssp EESCCCHHHHHHHHHHCSS
T ss_pred EEeeCCHHHHHHHHHHcCC
Confidence 999997653 4455544
No 71
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.74 E-value=6.4e-18 Score=169.99 Aligned_cols=170 Identities=16% Similarity=0.099 Sum_probs=117.9
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHH-HHHHHHhcC-CCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt~-l~~~l~~~~-~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
.+++|.++++.+.+++++++++|||||||.. +..++.... ...+.+++++.|+++++.|+++++.+......+..++.
T Consensus 47 ~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 126 (230)
T 2oxc_A 47 PSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHV 126 (230)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEE
Confidence 5789999999999999999999999999944 334444332 23356899999999999999999876543221222221
Q ss_pred eeec-----ccccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEe
Q 005291 84 AIRF-----EDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (704)
Q Consensus 84 ~~~~-----~~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~S 157 (704)
-... ......+.+|+++|++.+.+.+.... .+.++++||+|||| +..+.+.....+..++...+.+.+++++|
T Consensus 127 ~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~~~~~~i~~~~~~~~~~l~lS 205 (230)
T 2oxc_A 127 FIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEAD-KLLEEGSFQEQINWIYSSLPASKQMLAVS 205 (230)
T ss_dssp ECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHH-HHHSTTSSHHHHHHHHHHSCSSCEEEEEE
T ss_pred EeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCch-HhhcCcchHHHHHHHHHhCCCCCeEEEEE
Confidence 1111 11112357899999999998876543 57889999999999 44443323344566666666688999999
Q ss_pred cCCChHH---HhcccCCCCccc
Q 005291 158 ATLDGEK---VSKFFSNCPTLN 176 (704)
Q Consensus 158 ATl~~~~---~~~~~~~~~~i~ 176 (704)
||++.+. +..|++++..+.
T Consensus 206 AT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 206 ATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp SCCCHHHHHHHTTTCSSCEEEC
T ss_pred eccCHHHHHHHHHHcCCCeEEE
Confidence 9997653 556666554443
No 72
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.74 E-value=8e-18 Score=176.18 Aligned_cols=171 Identities=17% Similarity=0.143 Sum_probs=119.6
Q ss_pred chHHHHHHHHHhccC--CEEEEEcCCCCcHH-HHHHHHHHhcCC-CCCcEEEEcchhhHHHHHHHHHHHHHhCCccCcee
Q 005291 6 ILQYEETIVETVEQN--PVVVVIGETGSGKS-TQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (704)
Q Consensus 6 i~~~~~~il~~l~~~--~~vii~gpTGsGKT-t~l~~~l~~~~~-~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~v 81 (704)
.+++|.++++.+..+ ++++++|||||||| +++.+++..... ..+.+++++.|+|+|+.|+++.+........+..+
T Consensus 115 pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~ 194 (300)
T 3fmo_B 115 PSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKL 194 (300)
T ss_dssp CCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCE
T ss_pred CCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEE
Confidence 457799999999987 89999999999999 444455544433 23347999999999999999988665543223333
Q ss_pred eeeeecc---cccCcccceEEcchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEE
Q 005291 82 GYAIRFE---DRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (704)
Q Consensus 82 g~~~~~~---~~~~~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~ 156 (704)
++.+... .......+|+|+|||.|+..+.... .+.++++||||||| +.++.......+..+....+.+.+++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad-~l~~~~~~~~~~~~i~~~~~~~~q~i~~ 273 (300)
T 3fmo_B 195 AYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD-VMIATQGHQDQSIRIQRMLPRNCQMLLF 273 (300)
T ss_dssp EEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH-HHHHSTTHHHHHHHHHTTSCTTCEEEEE
T ss_pred EEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH-HHhhccCcHHHHHHHHHhCCCCCEEEEE
Confidence 3332222 2223456899999999999986533 57899999999999 4444223444456666666668999999
Q ss_pred ecCCChHH---HhcccCCCCcccc
Q 005291 157 SATLDGEK---VSKFFSNCPTLNV 177 (704)
Q Consensus 157 SATl~~~~---~~~~~~~~~~i~i 177 (704)
|||++.+. ...|+.++.++.+
T Consensus 274 SAT~~~~v~~~a~~~l~~p~~i~~ 297 (300)
T 3fmo_B 274 SATFEDSVWKFAQKVVPDPNVIKL 297 (300)
T ss_dssp ESCCCHHHHHHHHHHSSSCEEEEE
T ss_pred eccCCHHHHHHHHHHCCCCeEEEe
Confidence 99998654 3455555544443
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=169.54 Aligned_cols=172 Identities=17% Similarity=0.168 Sum_probs=116.6
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhcCC--CCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceee
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHGY--TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt-~l~~~l~~~~~--~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg 82 (704)
.+++|.++++.+.+++++++.+|||||||. ++.+++..... ..+.+++++.|+++++.|+++++.+.... .+..++
T Consensus 52 ~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~ 130 (245)
T 3dkp_A 52 PTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEG-TGFRIH 130 (245)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTT-SCCCEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcc-cCceEE
Confidence 678999999999999999999999999994 33334433321 23458999999999999999988765432 122221
Q ss_pred e----ee---ecccccCcccceEEcchHHHHHHHHhC---CCCCCCceEEEeCCCcCCCC---HHHHHHHHHHHHHHhcc
Q 005291 83 Y----AI---RFEDRTSERTLIKYLTDGVLLREILSN---PDLSPYSVIILDEAHERSLN---TDILLGLVKRLVNLRAS 149 (704)
Q Consensus 83 ~----~~---~~~~~~~~~~~I~~~T~g~Ll~~l~~~---~~l~~~~~IIiDEaHer~l~---~d~l~~llk~l~~~~~~ 149 (704)
. .. .+........+|+|+|++.+...+... ..+.++++||+||||+ ..+ .++...+...+....+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~-~~~~~~~~~~~~~~~i~~~~~~~ 209 (245)
T 3dkp_A 131 MIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDK-LFEDGKTGFRDQLASIFLACTSH 209 (245)
T ss_dssp CCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHH-HHHHC--CHHHHHHHHHHHCCCT
T ss_pred EEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHH-hcccccccHHHHHHHHHHhcCCC
Confidence 1 11 112223456789999999999988765 3688999999999994 333 23444433333333334
Q ss_pred CcEEEEEecCCChHH---HhcccCCCCccccCC
Q 005291 150 KLKILITSATLDGEK---VSKFFSNCPTLNVPG 179 (704)
Q Consensus 150 ~~kiI~~SATl~~~~---~~~~~~~~~~i~i~~ 179 (704)
+.++++||||++.+. ...++.++..+.+..
T Consensus 210 ~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 210 KVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp TCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred CcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 789999999997653 445565555555443
No 74
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.74 E-value=2.7e-18 Score=164.61 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=103.9
Q ss_pred HHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEccc
Q 005291 203 TAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNI 282 (704)
Q Consensus 203 ~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTni 282 (704)
.+..+....+.+++||||+++..++.+++.|... ++.+..+||+|+..+|..+++.|++|..+|||||++
T Consensus 21 ~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 90 (172)
T 1t5i_A 21 KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ----------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL 90 (172)
T ss_dssp HHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC
T ss_pred HHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc----------CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc
Confidence 3444444456789999999999999999999875 678899999999999999999999999999999999
Q ss_pred ccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCcc
Q 005291 283 AETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (704)
Q Consensus 283 ae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~ 348 (704)
+++|+|+|++++||+++. |.|..+|.||+||+||. ++|.|+.+++..+
T Consensus 91 ~~~Gldi~~~~~Vi~~d~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 139 (172)
T 1t5i_A 91 FGRGMDIERVNIAFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAITFVSDEN 139 (172)
T ss_dssp CSTTCCGGGCSEEEESSC------------------CSSHHHHHHHHHHHTGGGCCCEEEEEECSHH
T ss_pred hhcCcchhhCCEEEEECC------------------CCCHHHHHHHhcccccCCCCcEEEEEEcChh
Confidence 999999999999998553 56888999999999999 6899999998653
No 75
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.74 E-value=2.1e-17 Score=164.77 Aligned_cols=167 Identities=17% Similarity=0.121 Sum_probs=114.9
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHH-HHHHHHhcCCC-CCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGYT-KSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt~-l~~~l~~~~~~-~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
.+++|.++++.+.+++++++.+|||+|||.. +..++...... .+.+++++.|+++++.|+++.+.+......+..++.
T Consensus 37 ~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 116 (220)
T 1t6n_A 37 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAV 116 (220)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEE
Confidence 5789999999999999999999999999944 33333333222 234899999999999999998876653221222321
Q ss_pred eeeccc-------ccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCC-HHHHHHHHHHHHHHhccCcEEE
Q 005291 84 AIRFED-------RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLN-TDILLGLVKRLVNLRASKLKIL 154 (704)
Q Consensus 84 ~~~~~~-------~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~-~d~l~~llk~l~~~~~~~~kiI 154 (704)
-..... ......+|+++|++.+...+.... .+.++++||+||||. ..+ .++ ...+..+....+.+.+++
T Consensus 117 ~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~-~~~~~~~-~~~~~~i~~~~~~~~~~i 194 (220)
T 1t6n_A 117 FFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK-MLEQLDM-RRDVQEIFRMTPHEKQVM 194 (220)
T ss_dssp ESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHH-HHSSHHH-HHHHHHHHHTSCSSSEEE
T ss_pred EeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHH-HhcccCc-HHHHHHHHHhCCCcCeEE
Confidence 111110 011235899999999998876543 688999999999994 443 343 344566666665689999
Q ss_pred EEecCCChHH---HhcccCCCCc
Q 005291 155 ITSATLDGEK---VSKFFSNCPT 174 (704)
Q Consensus 155 ~~SATl~~~~---~~~~~~~~~~ 174 (704)
++|||++.+. ...|+.++..
T Consensus 195 ~~SAT~~~~~~~~~~~~~~~p~~ 217 (220)
T 1t6n_A 195 MFSATLSKEIRPVCRKFMQDPME 217 (220)
T ss_dssp EEESCCCTTTHHHHHTTCSSCEE
T ss_pred EEEeecCHHHHHHHHHHcCCCeE
Confidence 9999996543 4566655433
No 76
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.73 E-value=5.1e-18 Score=172.87 Aligned_cols=170 Identities=21% Similarity=0.217 Sum_probs=117.4
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHH-HHHHhc-CCCCCcEEEEcchhhHHHHHHHHHHHHHh---CCccCc
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLS-QILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQEL---GVRLGE 79 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~-~~l~~~-~~~~~~~ilv~~P~r~la~~~a~rva~~~---~~~vg~ 79 (704)
..+++|.++++.+.+++++++.+|||||||.... .++... ....+.+++++.|+++++.|+++++.+.. +..++.
T Consensus 65 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~ 144 (249)
T 3ber_A 65 KPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAV 144 (249)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEE
Confidence 4688999999999999999999999999995433 333222 12234579999999999999998876543 333333
Q ss_pred eeeeeeec--ccccCcccceEEcchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEE
Q 005291 80 EVGYAIRF--EDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (704)
Q Consensus 80 ~vg~~~~~--~~~~~~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~ 155 (704)
..|..... ........+|+|+|++++.+.+.... .+.++++||+|||| +..+.++... +..++...+.+.++++
T Consensus 145 ~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah-~l~~~~~~~~-l~~i~~~~~~~~~~l~ 222 (249)
T 3ber_A 145 IVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD-RILNMDFETE-VDKILKVIPRDRKTFL 222 (249)
T ss_dssp ECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH-HHHHTTCHHH-HHHHHHSSCSSSEEEE
T ss_pred EECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh-hhhccChHHH-HHHHHHhCCCCCeEEE
Confidence 33311100 01112457899999999999886533 67899999999999 5554444443 4555555555899999
Q ss_pred EecCCChHH---HhcccCCCCccc
Q 005291 156 TSATLDGEK---VSKFFSNCPTLN 176 (704)
Q Consensus 156 ~SATl~~~~---~~~~~~~~~~i~ 176 (704)
||||++.+. ...++.++..+.
T Consensus 223 ~SAT~~~~v~~~~~~~l~~p~~i~ 246 (249)
T 3ber_A 223 FSATMTKKVQKLQRAALKNPVKCA 246 (249)
T ss_dssp EESSCCHHHHHHHHHHCSSCEEEE
T ss_pred EeccCCHHHHHHHHHHCCCCEEEE
Confidence 999998654 445665544443
No 77
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.73 E-value=6.3e-18 Score=168.64 Aligned_cols=171 Identities=19% Similarity=0.199 Sum_probs=116.9
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHH-HHHHHHhcCC-CCCcEEEEcchhhHHHHHHHHHHHHHhCC-------
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGV------- 75 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKTt~-l~~~l~~~~~-~~~~~ilv~~P~r~la~~~a~rva~~~~~------- 75 (704)
..+++|.++++.+.+++++++++|||||||.. +..++..... ..+.+++++.|+++++.|+++.+.+....
T Consensus 26 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 105 (219)
T 1q0u_A 26 KPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMI 105 (219)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCC
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccce
Confidence 35789999999999999999999999999954 3334433322 23458999999999999999988766532
Q ss_pred ccCceeeeeeec--ccccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcE
Q 005291 76 RLGEEVGYAIRF--EDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (704)
Q Consensus 76 ~vg~~vg~~~~~--~~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~k 152 (704)
.++...|..... ........+|+|+|++.+.+.+.... .+.++++||+||||. ..+.++ ...+..+....+.+.+
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-~~~~~~-~~~l~~i~~~~~~~~~ 183 (219)
T 1q0u_A 106 VARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL-MLDMGF-ITDVDQIAARMPKDLQ 183 (219)
T ss_dssp CEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH-HHHTTC-HHHHHHHHHTSCTTCE
T ss_pred EEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchH-HhhhCh-HHHHHHHHHhCCcccE
Confidence 222222211100 01112357899999999998876543 578899999999993 332222 2335556665555889
Q ss_pred EEEEecCCChHH---HhcccCCCCcccc
Q 005291 153 ILITSATLDGEK---VSKFFSNCPTLNV 177 (704)
Q Consensus 153 iI~~SATl~~~~---~~~~~~~~~~i~i 177 (704)
+++||||++.+. +..++.++..+.+
T Consensus 184 ~l~~SAT~~~~~~~~~~~~~~~p~~~~~ 211 (219)
T 1q0u_A 184 MLVFSATIPEKLKPFLKKYMENPTFVHV 211 (219)
T ss_dssp EEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred EEEEecCCCHHHHHHHHHHcCCCeEEEe
Confidence 999999997643 5566665544443
No 78
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.73 E-value=9.3e-18 Score=169.37 Aligned_cols=173 Identities=19% Similarity=0.138 Sum_probs=117.1
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHH-HHHHhc---C--CCCCcEEEEcchhhHHHHHHHHHHHHHhC---C
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLS-QILHRH---G--YTKSGIIGVTQPRRVAAVSVARRVAQELG---V 75 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~-~~l~~~---~--~~~~~~ilv~~P~r~la~~~a~rva~~~~---~ 75 (704)
..+++|.++++.+.+++++++.+|||||||.... +++... . ...+.+++++.|+++++.|+++.+.+... .
T Consensus 47 ~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 126 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDF 126 (236)
T ss_dssp BCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSC
T ss_pred CCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCe
Confidence 3578999999999999999999999999995332 222221 1 12355899999999999999998866543 2
Q ss_pred ccCceeeeeee-cccccCcccceEEcchHHHHHHHHhC--CCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcE
Q 005291 76 RLGEEVGYAIR-FEDRTSERTLIKYLTDGVLLREILSN--PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (704)
Q Consensus 76 ~vg~~vg~~~~-~~~~~~~~~~I~~~T~g~Ll~~l~~~--~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~k 152 (704)
.++...|.... .+.....+.+|+|+|++.+.+.+... ..+.++++||+|||| +..+.++. ..+..++...+.+.+
T Consensus 127 ~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah-~~~~~~~~-~~~~~i~~~~~~~~~ 204 (236)
T 2pl3_A 127 SAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD-RILDMGFA-DTMNAVIENLPKKRQ 204 (236)
T ss_dssp CEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHH-HHHHTTTH-HHHHHHHHTSCTTSE
T ss_pred eEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChH-HHhcCCcH-HHHHHHHHhCCCCCe
Confidence 22222221110 01111235789999999999888654 367899999999999 44433333 335556665655889
Q ss_pred EEEEecCCChHH---HhcccCCCCccccCC
Q 005291 153 ILITSATLDGEK---VSKFFSNCPTLNVPG 179 (704)
Q Consensus 153 iI~~SATl~~~~---~~~~~~~~~~i~i~~ 179 (704)
+++||||++... ...++.++..+.+.+
T Consensus 205 ~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 205 TLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp EEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred EEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 999999997654 345666655555543
No 79
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.73 E-value=4.7e-18 Score=164.96 Aligned_cols=111 Identities=17% Similarity=0.249 Sum_probs=87.2
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCC
Q 005291 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDG 291 (704)
Q Consensus 212 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~ 291 (704)
+.+++||||+++..++.+++.|... ++.+..+||+|+..+|.++++.|++|..+|||||+++++|+|+|+
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----------g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~ 114 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 114 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----------TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----------CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCccc
Confidence 5679999999999999999999874 678999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCcccc
Q 005291 292 VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (704)
Q Consensus 292 v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~ 350 (704)
+++||+.+. |.|..+|.||+||+||. ++|.|+.+++..+..
T Consensus 115 ~~~VI~~d~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 156 (185)
T 2jgn_A 115 VKHVINFDL------------------PSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 156 (185)
T ss_dssp BSEEEESSC------------------CSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGG
T ss_pred CCEEEEeCC------------------CCCHHHHHHHccccCCCCCCcEEEEEEchhhHH
Confidence 999998543 56888999999999999 689999999876654
No 80
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=163.18 Aligned_cols=117 Identities=18% Similarity=0.256 Sum_probs=100.9
Q ss_pred HHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcc
Q 005291 202 KTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTN 281 (704)
Q Consensus 202 ~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTn 281 (704)
..+.++... .++++||||+++.+++.+++.|... ++.+..+||+|+..+|.++++.|++|..+|||||+
T Consensus 44 ~~L~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~----------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 112 (191)
T 2p6n_A 44 VYLLECLQK-TPPPVLIFAEKKADVDAIHEYLLLK----------GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD 112 (191)
T ss_dssp HHHHHHHTT-SCSCEEEECSCHHHHHHHHHHHHHH----------TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH
T ss_pred HHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 334444433 3568999999999999999999875 67889999999999999999999999999999999
Q ss_pred cccccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCc
Q 005291 282 IAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (704)
Q Consensus 282 iae~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~ 347 (704)
++++|+|+|++++||+++. |.+..+|.||+||+||. .+|.|+.+++..
T Consensus 113 ~~~~Gldi~~v~~VI~~d~------------------p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDM------------------PEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp HHHTTCCCCCCSEEEESSC------------------CSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred chhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 9999999999999998543 56788999999999999 689999999865
No 81
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.72 E-value=5.5e-18 Score=171.86 Aligned_cols=170 Identities=21% Similarity=0.164 Sum_probs=116.1
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhcCC------CCCcEEEEcchhhHHHHHHHHHHHHH---hCC
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHGY------TKSGIIGVTQPRRVAAVSVARRVAQE---LGV 75 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt-~l~~~l~~~~~------~~~~~ilv~~P~r~la~~~a~rva~~---~~~ 75 (704)
.+++|.++++.+.+|+++++++|||||||. ++.+++..... ..+.+++++.|+++++.|+++.+.+. .+.
T Consensus 52 ~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 131 (242)
T 3fe2_A 52 PTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRL 131 (242)
T ss_dssp CCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCc
Confidence 578999999999999999999999999993 33333332211 23557999999999999998876543 344
Q ss_pred ccCceeeeeeecc--cccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcE
Q 005291 76 RLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (704)
Q Consensus 76 ~vg~~vg~~~~~~--~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~k 152 (704)
.+....|...... .....+.+|+|+||+.+...+.... .+.++++||+|||| +..+.++ ...+..++...+++.+
T Consensus 132 ~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~l~~~~~-~~~~~~i~~~~~~~~q 209 (242)
T 3fe2_A 132 KSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEAD-RMLDMGF-EPQIRKIVDQIRPDRQ 209 (242)
T ss_dssp CEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHH-HHHHTTC-HHHHHHHHTTSCSSCE
T ss_pred eEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHH-HHhhhCc-HHHHHHHHHhCCccce
Confidence 4333222111100 0112347899999999999886554 68899999999999 3443333 3335566666656899
Q ss_pred EEEEecCCChHH---HhcccCCCCcccc
Q 005291 153 ILITSATLDGEK---VSKFFSNCPTLNV 177 (704)
Q Consensus 153 iI~~SATl~~~~---~~~~~~~~~~i~i 177 (704)
+++||||++.+. ...|+.++..+.+
T Consensus 210 ~~~~SAT~~~~~~~~~~~~l~~~~~i~~ 237 (242)
T 3fe2_A 210 TLMWSATWPKEVRQLAEDFLKDYIHINI 237 (242)
T ss_dssp EEEEESCCCHHHHHHHHHHCSSCEEEEE
T ss_pred EEEEEeecCHHHHHHHHHHCCCCEEEEe
Confidence 999999997653 4456655444444
No 82
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.71 E-value=4.9e-18 Score=174.37 Aligned_cols=156 Identities=17% Similarity=0.193 Sum_probs=111.0
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhcC-----CCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCc
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHG-----YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt-~l~~~l~~~~-----~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~ 79 (704)
.+++|.+++..+..+++++++||||||||. ++.+++.... ...+.+++++.|+++|+.|+++.+.+.... .+.
T Consensus 77 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~-~~~ 155 (262)
T 3ly5_A 77 MTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTH-HVH 155 (262)
T ss_dssp CCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTT-CCS
T ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhh-cCc
Confidence 678999999999999999999999999994 3333332211 123568999999999999999988765432 222
Q ss_pred eeeeeeeccc------ccCcccceEEcchHHHHHHHHhCC--CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCc
Q 005291 80 EVGYAIRFED------RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL 151 (704)
Q Consensus 80 ~vg~~~~~~~------~~~~~~~I~~~T~g~Ll~~l~~~~--~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~ 151 (704)
.++....... ....+.+|+|+|||.+...+.... .+.++++||||||| +..+.++. ..+..++...+.+.
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah-~l~~~~~~-~~l~~i~~~~~~~~ 233 (262)
T 3ly5_A 156 TYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD-RILDVGFE-EELKQIIKLLPTRR 233 (262)
T ss_dssp CEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH-HHHHTTCH-HHHHHHHHHSCSSS
T ss_pred eEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH-HHhhhhHH-HHHHHHHHhCCCCC
Confidence 3322111111 111347899999999999887654 67899999999999 44443333 33566666666689
Q ss_pred EEEEEecCCChHH
Q 005291 152 KILITSATLDGEK 164 (704)
Q Consensus 152 kiI~~SATl~~~~ 164 (704)
++++||||++.+.
T Consensus 234 q~l~~SAT~~~~v 246 (262)
T 3ly5_A 234 QTMLFSATQTRKV 246 (262)
T ss_dssp EEEEECSSCCHHH
T ss_pred eEEEEEecCCHHH
Confidence 9999999998654
No 83
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.71 E-value=1.8e-17 Score=167.52 Aligned_cols=169 Identities=16% Similarity=0.139 Sum_probs=113.5
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHH-HHHHHHhcCC-CCCcEEEEcchhhHHHHHHHHHHHHHhC---CccCce
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELG---VRLGEE 80 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt~-l~~~l~~~~~-~~~~~ilv~~P~r~la~~~a~rva~~~~---~~vg~~ 80 (704)
.+++|.++++.+.+++++++.+|||||||.. +..++..... ..+.+++++.|+++++.|+++.+.+... ..+...
T Consensus 53 ~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 132 (237)
T 3bor_A 53 PSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHAC 132 (237)
T ss_dssp CCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEE
Confidence 5789999999999999999999999999944 3334433322 2356899999999999999998866542 222222
Q ss_pred eeeeeecc---cccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEE
Q 005291 81 VGYAIRFE---DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (704)
Q Consensus 81 vg~~~~~~---~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~ 156 (704)
+|...... .......+|+++|++.+.+.+.... .+.++++||+||||. ..+.++. ..+..++...+.+.+++++
T Consensus 133 ~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-~~~~~~~-~~l~~i~~~~~~~~~~i~~ 210 (237)
T 3bor_A 133 IGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADE-MLSRGFK-DQIYEIFQKLNTSIQVVLL 210 (237)
T ss_dssp CC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHH-HHHTTCH-HHHHHHHHHSCTTCEEEEE
T ss_pred ECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchH-hhccCcH-HHHHHHHHhCCCCCeEEEE
Confidence 22111111 1111237899999999998886543 578899999999993 3333332 2344555555558999999
Q ss_pred ecCCChHH---HhcccCCCCccc
Q 005291 157 SATLDGEK---VSKFFSNCPTLN 176 (704)
Q Consensus 157 SATl~~~~---~~~~~~~~~~i~ 176 (704)
|||++.+. +..|+.++..+.
T Consensus 211 SAT~~~~~~~~~~~~l~~p~~i~ 233 (237)
T 3bor_A 211 SATMPTDVLEVTKKFMRDPIRIL 233 (237)
T ss_dssp CSSCCHHHHHHHHHHCSSCEEEC
T ss_pred EEecCHHHHHHHHHHCCCCEEEE
Confidence 99997643 456665544443
No 84
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.71 E-value=4.8e-17 Score=160.43 Aligned_cols=170 Identities=21% Similarity=0.147 Sum_probs=115.9
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHH-HHHHHHhcCC----CCCcEEEEcchhhHHHHHHHHHHHHHhCC-ccC
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGY----TKSGIIGVTQPRRVAAVSVARRVAQELGV-RLG 78 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKTt~-l~~~l~~~~~----~~~~~ilv~~P~r~la~~~a~rva~~~~~-~vg 78 (704)
..+++|.++++.+.+++++++.+|||||||.. +..++..... ..+.+++++.|+++++.|+++++.+..+. .+.
T Consensus 23 ~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 102 (207)
T 2gxq_A 23 TPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVV 102 (207)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEE
T ss_pred CCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEE
Confidence 46789999999999999999999999999954 3333333221 23568999999999999999999776542 221
Q ss_pred ceeeeeeec--ccccCcccceEEcchHHHHHHHHhC-CCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEE
Q 005291 79 EEVGYAIRF--EDRTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (704)
Q Consensus 79 ~~vg~~~~~--~~~~~~~~~I~~~T~g~Ll~~l~~~-~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~ 155 (704)
...|..... ........+|+++|++.+.+.+... ..+.++++||+||||. ..+.++ ...+..++...+.+.++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~-~~~~~~-~~~~~~i~~~~~~~~~~i~ 180 (207)
T 2gxq_A 103 AVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE-MLSMGF-EEEVEALLSATPPSRQTLL 180 (207)
T ss_dssp EECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH-HHHTTC-HHHHHHHHHTSCTTSEEEE
T ss_pred EEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH-hhccch-HHHHHHHHHhCCccCeEEE
Confidence 112211000 0011135789999999999888654 3688999999999993 333222 3335555555555899999
Q ss_pred EecCCChHH---HhcccCCCCccc
Q 005291 156 TSATLDGEK---VSKFFSNCPTLN 176 (704)
Q Consensus 156 ~SATl~~~~---~~~~~~~~~~i~ 176 (704)
||||++.+. ...|++++..+.
T Consensus 181 ~SAT~~~~~~~~~~~~~~~p~~i~ 204 (207)
T 2gxq_A 181 FSATLPSWAKRLAERYMKNPVLIN 204 (207)
T ss_dssp ECSSCCHHHHHHHHHHCSSCEEEE
T ss_pred EEEecCHHHHHHHHHHcCCCeEEE
Confidence 999997643 445665544443
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.53 E-value=1.3e-18 Score=166.63 Aligned_cols=119 Identities=15% Similarity=0.214 Sum_probs=103.6
Q ss_pred HHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEcccc
Q 005291 204 AIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIA 283 (704)
Q Consensus 204 ~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTnia 283 (704)
+..+......+++||||+++.+++.+++.|... ++.+..+||+|+..+|.++++.|++|..+|||||+++
T Consensus 21 l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~----------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 90 (170)
T 2yjt_D 21 LVHLLKQPEATRSIVFVRKRERVHELANWLREA----------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVA 90 (170)
Confidence 334444445679999999999999999999764 6788999999999999999999999999999999999
Q ss_pred cccccCCCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC-CCceEEEecCCcccc
Q 005291 284 ETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (704)
Q Consensus 284 e~gidip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~-~~G~c~~L~~~~~~~ 350 (704)
++|+|+|++++||+++. |.|..+|.||+||+||. ++|.|+.+++..+..
T Consensus 91 ~~Gid~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 140 (170)
T 2yjt_D 91 ARGIDIPDVSHVFNFDM------------------PRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 140 (170)
Confidence 99999999999998553 56778899999999999 589999999876543
No 86
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.65 E-value=3.6e-16 Score=159.45 Aligned_cols=170 Identities=21% Similarity=0.184 Sum_probs=111.5
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHH-HHHHHHHhcCC----------CCCcEEEEcchhhHHHHHHHHHHHHHhC
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHGY----------TKSGIIGVTQPRRVAAVSVARRVAQELG 74 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt-~l~~~l~~~~~----------~~~~~ilv~~P~r~la~~~a~rva~~~~ 74 (704)
.+++|.++++.+.+++++++++|||||||. ++.+++..... ..+.+++++.|+++++.|+++++.+...
T Consensus 46 ~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 125 (253)
T 1wrb_A 46 PTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSL 125 (253)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999994 33333322211 1234799999999999999998866543
Q ss_pred C---ccCceeeeeeecc--cccCcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHH--
Q 005291 75 V---RLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNL-- 146 (704)
Q Consensus 75 ~---~vg~~vg~~~~~~--~~~~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~-- 146 (704)
. .+....|...... .......+|+++|++.+.+.+.... .+.++++||+||||. ..+.++. ..+..++..
T Consensus 126 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-~~~~~~~-~~~~~i~~~~~ 203 (253)
T 1wrb_A 126 NTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADR-MLDMGFE-PQIRKIIEESN 203 (253)
T ss_dssp TSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHH-HHHTTCH-HHHHHHHHSSC
T ss_pred cCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHH-HHhCchH-HHHHHHHhhcc
Confidence 2 2211222110000 0112357899999999998886554 688999999999993 3332222 234445442
Q ss_pred hcc--CcEEEEEecCCChHH---HhcccCCCCcccc
Q 005291 147 RAS--KLKILITSATLDGEK---VSKFFSNCPTLNV 177 (704)
Q Consensus 147 ~~~--~~kiI~~SATl~~~~---~~~~~~~~~~i~i 177 (704)
.+. +.++++||||++.+. ...++.++..+.+
T Consensus 204 ~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 239 (253)
T 1wrb_A 204 MPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239 (253)
T ss_dssp CCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred CCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEE
Confidence 222 678999999997653 3455554434433
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.64 E-value=4.8e-16 Score=154.03 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=100.9
Q ss_pred CCCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcC-----CCCCcEEEEcchhhHHHHH-HHHHHHHHhCC-
Q 005291 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHG-----YTKSGIIGVTQPRRVAAVS-VARRVAQELGV- 75 (704)
Q Consensus 3 ~LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~-----~~~~~~ilv~~P~r~la~~-~a~rva~~~~~- 75 (704)
.++.+++|.++++.+.+++++++.+|||+|||.....++.... ...+.+++++.|+++++.| +.+.+......
T Consensus 31 ~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~ 110 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKW 110 (216)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTT
T ss_pred CCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccC
Confidence 4678999999999999999999999999999965544443221 1235689999999999999 55556554432
Q ss_pred -ccCceeeeeeeccc--ccCcccceEEcchHHHHHHHHhC-------CCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHH
Q 005291 76 -RLGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSN-------PDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (704)
Q Consensus 76 -~vg~~vg~~~~~~~--~~~~~~~I~~~T~g~Ll~~l~~~-------~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~ 145 (704)
.++...|....... ......+|+++|++.+.+.+... ..+.++++||+||||. ..+..+...++..+..
T Consensus 111 ~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~-~~~~~~~~~~~~~~~~ 189 (216)
T 3b6e_A 111 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH-TNKEAVYNNIMRHYLM 189 (216)
T ss_dssp SCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHHHHHHHH
T ss_pred ceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchh-hccCCcHHHHHHHHHH
Confidence 22222221100000 11134789999999999888654 3578899999999994 4444444444444433
Q ss_pred Hh-------------ccCcEEEEEecC
Q 005291 146 LR-------------ASKLKILITSAT 159 (704)
Q Consensus 146 ~~-------------~~~~kiI~~SAT 159 (704)
.+ .++.++|+||||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 190 QKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HhcccccccccccCCCCcceEEEeecC
Confidence 22 037899999998
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.59 E-value=1e-14 Score=165.06 Aligned_cols=128 Identities=13% Similarity=0.079 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEE
Q 005291 198 ESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFI 277 (704)
Q Consensus 198 ~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIl 277 (704)
......+..+.. ..+|.+|||+|+....+.+++.+.. ..+ ..++.. .++.++++.|+.+. .|+
T Consensus 370 ~~~~~~l~~~~~-~~~g~~lvff~S~~~~~~v~~~l~~------------~~~-~~q~~~--~~~~~~l~~f~~~~-~il 432 (540)
T 2vl7_A 370 PIYSILLKRIYE-NSSKSVLVFFPSYEMLESVRIHLSG------------IPV-IEENKK--TRHEEVLELMKTGK-YLV 432 (540)
T ss_dssp HHHHHHHHHHHH-TCSSEEEEEESCHHHHHHHHTTCTT------------SCE-EESTTT--CCHHHHHHHHHTSC-CEE
T ss_pred HHHHHHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHhcc------------Cce-EecCCC--CcHHHHHHHHhcCC-eEE
Confidence 333444444443 4578999999999999988876532 122 334443 34566666676653 566
Q ss_pred E--EcccccccccCCC----eEEEEeCCccccccccCC-------------CCccccccccccHHhHHhhccccCCC--C
Q 005291 278 V--STNIAETSLTVDG----VVYVIDCGYVKQRQYNPS-------------SGMYSLDVVQISKVQANQRVGRAGRT--R 336 (704)
Q Consensus 278 v--aTniae~gidip~----v~~VId~g~~k~~~~~~~-------------~g~~~l~~~~iS~~~~~QR~GRaGR~--~ 336 (704)
+ +|+.+..|||+|+ ++.||..|++....-||. .+.... ..+.......|-+||+-|. .
T Consensus 433 ~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Q~~GR~iR~~~D 511 (540)
T 2vl7_A 433 MLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSI-IHDLTAIVIKQTIGRAFRDPND 511 (540)
T ss_dssp EEEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHH-HHHHHHHHHHHHHHHHCCSTTC
T ss_pred EEEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHH-HHHHHHHHHHHHhCCcccCCCc
Confidence 6 8899999999998 899999998765543431 111111 0122256678999999997 3
Q ss_pred CceEEEe
Q 005291 337 PGKCYRL 343 (704)
Q Consensus 337 ~G~c~~L 343 (704)
.|..+.+
T Consensus 512 ~g~v~ll 518 (540)
T 2vl7_A 512 YVKIYLC 518 (540)
T ss_dssp CCEEEEE
T ss_pred cEEEEEE
Confidence 4665544
No 89
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.56 E-value=1.1e-13 Score=157.94 Aligned_cols=117 Identities=20% Similarity=0.202 Sum_probs=82.5
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHH-HH-HHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHH---HHhCCccCcee
Q 005291 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVA---QELGVRLGEEV 81 (704)
Q Consensus 7 ~~~~~~il~~l~~~~~vii~gpTGsGKT-t~-l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva---~~~~~~vg~~v 81 (704)
++.|...+..+.+|+ +..+.||+||| ++ +|.++... .+..+.|+.|++.||.|.++.+. +.+|..++..+
T Consensus 81 t~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL---~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~ 155 (997)
T 2ipc_A 81 FDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL---TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQ 155 (997)
T ss_dssp CHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT---TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECC
T ss_pred cHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH---hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 677888888888998 88999999999 33 34333332 24578999999999999988764 44556555544
Q ss_pred eeeeecccccCcccceEEcchHHH-HHHHHhC-------CCCC---CCceEEEeCCCc
Q 005291 82 GYAIRFEDRTSERTLIKYLTDGVL-LREILSN-------PDLS---PYSVIILDEAHE 128 (704)
Q Consensus 82 g~~~~~~~~~~~~~~I~~~T~g~L-l~~l~~~-------~~l~---~~~~IIiDEaHe 128 (704)
|.............+|+|+|+|.+ ..++... ..++ ++.++||||+|.
T Consensus 156 Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 156 HASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp TTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred CCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 422111122223579999999999 6666544 2466 899999999994
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.50 E-value=2.4e-14 Score=148.42 Aligned_cols=150 Identities=11% Similarity=0.002 Sum_probs=102.2
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeee
Q 005291 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~ 83 (704)
+..+++|.+.++.+..+...++++|||+|||.++..++........++++++.|+++++.|+.+++.+..... +..++.
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~-~~~~~~ 190 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFS-HAMIKK 190 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCC-GGGEEE
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccc-cceEEE
Confidence 4678899999998888888899999999999655444433222234589999999999999999997654322 222221
Q ss_pred eeecccc---cCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 84 AIRFEDR---TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 84 ~~~~~~~---~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
-...... .....+|+++|++.+.+... ..+.++++||+||||. .. .. .+..++.......+++++|||+
T Consensus 191 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~--~~~~~~~~vIiDEaH~-~~-~~----~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQPK--EWFSQFGMMMNDECHL-AT-GK----SISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp CSTTCSSTTCCCTTCSEEEECHHHHTTSCG--GGGGGEEEEEEETGGG-CC-HH----HHHHHTTTCTTCCEEEEECSSC
T ss_pred EeCCCcchhhhccCCcEEEEchHHHHhhHH--HHHhhCCEEEEECCcc-CC-cc----cHHHHHHHhhcCCeEEEEeCCC
Confidence 1111111 11567899999998754321 2467889999999993 33 22 2344444443378999999999
Q ss_pred Ch
Q 005291 161 DG 162 (704)
Q Consensus 161 ~~ 162 (704)
+.
T Consensus 263 ~~ 264 (282)
T 1rif_A 263 RD 264 (282)
T ss_dssp CT
T ss_pred CC
Confidence 53
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.45 E-value=3.5e-13 Score=135.85 Aligned_cols=138 Identities=19% Similarity=0.177 Sum_probs=101.1
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCc-cCceee
Q 005291 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR-LGEEVG 82 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~-vg~~vg 82 (704)
...+++|.+.+..+.+++.++++||||+|||.++..++... +..++++.|++.++.|+.+.+.+ ++.. ++...|
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~~~g 166 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFSG 166 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHHHHHHHGG-GCGGGEEEESS
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHh-CCCCeEEEEeC
Confidence 35689999999999999999999999999997766665553 46789999999999999998877 5543 322222
Q ss_pred eeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCCh
Q 005291 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (704)
Q Consensus 83 ~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~ 162 (704)
......+|+++|++.+.+.... ...++++|||||+|. ..+.. .+.+....+ ..+++++|||+..
T Consensus 167 -------~~~~~~~i~v~T~~~l~~~~~~--~~~~~~llIiDEaH~-l~~~~-----~~~i~~~~~-~~~~l~LSATp~r 230 (237)
T 2fz4_A 167 -------RIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHH-LPAES-----YVQIAQMSI-APFRLGLTATFER 230 (237)
T ss_dssp -------SCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEECSSC-CCTTT-----HHHHHHTCC-CSEEEEEEESCC-
T ss_pred -------CCCCcCCEEEEeHHHHHhhHHH--hcccCCEEEEECCcc-CCChH-----HHHHHHhcc-CCEEEEEecCCCC
Confidence 1123578999999988766532 235689999999994 43322 233444454 7789999999853
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.37 E-value=1.1e-10 Score=132.23 Aligned_cols=173 Identities=14% Similarity=0.112 Sum_probs=102.2
Q ss_pred cEEEEEecCCCh-HHHhcccCCC-Cc------cccCCCcCcee-EEecCC-C-------CcchHHHHHHHHHHHHccCCC
Q 005291 151 LKILITSATLDG-EKVSKFFSNC-PT------LNVPGKLYPVE-ILHSKE-R-------PTSYLESALKTAIDIHVREPE 213 (704)
Q Consensus 151 ~kiI~~SATl~~-~~~~~~~~~~-~~------i~i~~~~~pv~-~~~~~~-~-------~~~~~~~~~~~~~~i~~~~~~ 213 (704)
..+|++|||+.+ +.+.+.++-. +. +.++.. ++-. ..|.+. . ..++.....+.+..+.. ..+
T Consensus 316 ~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~sp-f~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~-~~~ 393 (551)
T 3crv_A 316 LSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKR-VSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYF-QAK 393 (551)
T ss_dssp CEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSC-CSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHH-HCS
T ss_pred ceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCc-CCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHH-hCC
Confidence 689999999965 3355555432 21 122221 1111 112111 1 12344555555555543 346
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEc--ccccccccCC-
Q 005291 214 GDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVST--NIAETSLTVD- 290 (704)
Q Consensus 214 g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaT--niae~gidip- 290 (704)
|.+|||+|+....+.+++. .+..++.-..+++.++..+.|+ ..+ .-|++|| .....|||+|
T Consensus 394 g~~lvlF~Sy~~l~~v~~~-------------~~~~v~~q~~~~~~~~~~~~~~--~~~-~~vl~~v~gg~~~EGiD~~d 457 (551)
T 3crv_A 394 ANVLVVFPSYEIMDRVMSR-------------ISLPKYVESEDSSVEDLYSAIS--ANN-KVLIGSVGKGKLAEGIELRN 457 (551)
T ss_dssp SEEEEEESCHHHHHHHHTT-------------CCSSEEECCSSCCHHHHHHHTT--SSS-SCEEEEESSCCSCCSSCCEE
T ss_pred CCEEEEecCHHHHHHHHHh-------------cCCcEEEcCCCCCHHHHHHHHH--hcC-CeEEEEEecceecccccccc
Confidence 7999999999998888751 1334444444566666666665 223 4799998 6999999999
Q ss_pred --C--eEEEEeCCccccccccCC-----------CCcccc---ccccccHHhHHhhccccCCCCC--ceEEEe
Q 005291 291 --G--VVYVIDCGYVKQRQYNPS-----------SGMYSL---DVVQISKVQANQRVGRAGRTRP--GKCYRL 343 (704)
Q Consensus 291 --~--v~~VId~g~~k~~~~~~~-----------~g~~~l---~~~~iS~~~~~QR~GRaGR~~~--G~c~~L 343 (704)
+ .+.||-.|++-... ||. .|-... -..| ......|-+||+=|... |..+.+
T Consensus 458 ~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 528 (551)
T 3crv_A 458 NDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVNDKCNVWLL 528 (551)
T ss_dssp TTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTCEEEEEEE
T ss_pred cCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCccEEEEEe
Confidence 4 78888888876554 442 122111 1223 45567799999999853 555544
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.20 E-value=1.1e-11 Score=127.26 Aligned_cols=113 Identities=15% Similarity=0.135 Sum_probs=84.3
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCC-CcE-EEEEcccccccccC
Q 005291 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN-CRR-FIVSTNIAETSLTV 289 (704)
Q Consensus 212 ~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g-~~k-IlvaTniae~gidi 289 (704)
.+.++|||+.....++.+...|.+.. ++.+..+||+++..+|.++++.|.+| ..+ +|+||+++++|+|+
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~---------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl 181 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKEL---------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINL 181 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH---------CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCC
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhc---------CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCc
Confidence 46799999999999999999998742 56677899999999999999999988 566 78999999999999
Q ss_pred CCeEEEEeCCccccccccCCCCccccccccccHHhHHhhccccCCC---CCceEEEecCCccccc
Q 005291 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPSTVYHD 351 (704)
Q Consensus 290 p~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~~~~~QR~GRaGR~---~~G~c~~L~~~~~~~~ 351 (704)
+++++||+++. |-+.+.+.||.||++|. ++-.+|+|+++...+.
T Consensus 182 ~~a~~VI~~d~------------------~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe 228 (271)
T 1z5z_A 182 TSANRVIHFDR------------------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 228 (271)
T ss_dssp TTCSEEEECSC------------------CSCTTTC--------------CCEEEEEEETTSHHH
T ss_pred ccCCEEEEECC------------------CCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHH
Confidence 99999998442 33455667999999887 3456799988876554
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.91 E-value=9.2e-09 Score=117.69 Aligned_cols=130 Identities=13% Similarity=0.190 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEE
Q 005291 197 LESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRF 276 (704)
Q Consensus 197 ~~~~~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kI 276 (704)
.....+.+..+... .+|.+|||+|+....+.+++.+. . .+.. ...+++..++..+++.|. +.--|
T Consensus 433 ~~~~~~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~l~-~---------~~~~---~~q~~~~~~~~~ll~~f~-~~~~v 497 (620)
T 4a15_A 433 LDRMATVIEDIILK-VKKNTIVYFPSYSLMDRVENRVS-F---------EHMK---EYRGIDQKELYSMLKKFR-RDHGT 497 (620)
T ss_dssp HHHHHHHHHHHHHH-HCSCEEEEESCHHHHHHHTSSCC-S---------CCEE---CCTTCCSHHHHHHHHHHT-TSCCE
T ss_pred HHHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHHH-h---------cchh---ccCCCChhHHHHHHHHhc-cCCcE
Confidence 34444444444433 36789999999999888877664 1 1222 444555567778888887 78889
Q ss_pred EEEcc--cccccccCCC--eEEEEeCCccccccccCC-------------CCccccccccccHHhHHhhccccCCCC--C
Q 005291 277 IVSTN--IAETSLTVDG--VVYVIDCGYVKQRQYNPS-------------SGMYSLDVVQISKVQANQRVGRAGRTR--P 337 (704)
Q Consensus 277 lvaTn--iae~gidip~--v~~VId~g~~k~~~~~~~-------------~g~~~l~~~~iS~~~~~QR~GRaGR~~--~ 337 (704)
+++|. .+..|||+|+ .+.||-.|++-... ||. .|...--..| ......|-+||+=|.. .
T Consensus 498 L~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~ 575 (620)
T 4a15_A 498 IFAVSGGRLSEGINFPGNELEMIILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDT 575 (620)
T ss_dssp EEEETTSCC--------CCCCEEEESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCC
T ss_pred EEEEecCceeccccCCCCceEEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCce
Confidence 99974 9999999987 66888888764332 221 1111001112 3455679999999973 4
Q ss_pred ceEEEe
Q 005291 338 GKCYRL 343 (704)
Q Consensus 338 G~c~~L 343 (704)
|..+.+
T Consensus 576 G~v~ll 581 (620)
T 4a15_A 576 GACVIL 581 (620)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 666654
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.26 E-value=2.2e-06 Score=97.88 Aligned_cols=140 Identities=15% Similarity=0.196 Sum_probs=77.4
Q ss_pred HHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcC---CCCCcEEEEcchhhHHHHHHHHHHHH---HhCCccCcee
Q 005291 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHG---YTKSGIIGVTQPRRVAAVSVARRVAQ---ELGVRLGEEV 81 (704)
Q Consensus 8 ~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~---~~~~~~ilv~~P~r~la~~~a~rva~---~~~~~vg~~v 81 (704)
+.|.+.+..+..+++++|+|++||||||.+..++.... ...+.+|+++.|+..++.++.+.+.. .++.... .
T Consensus 152 ~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~--~ 229 (608)
T 1w36_D 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDE--Q 229 (608)
T ss_dssp CHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSC--C
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHH--H
Confidence 45777788888899999999999999977655443321 12345899999999999988776543 2221100 0
Q ss_pred eeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEec
Q 005291 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (704)
Q Consensus 82 g~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SA 158 (704)
...+.....+ -..++-.+++.. ...........+++|||||++ +++.+.+.. ++...+.+.++|++.=
T Consensus 230 ~~~~~~~~~T--ih~ll~~~~~~~-~~~~~~~~~l~~d~lIIDEAs--ml~~~~~~~----Ll~~l~~~~~liLvGD 297 (608)
T 1w36_D 230 KKRIPEDAST--LHRLLGAQPGSQ-RLRHHAGNPLHLDVLVVDEAS--MIDLPMMSR----LIDALPDHARVIFLGD 297 (608)
T ss_dssp CCSCSCCCBT--TTSCC------------CTTSCCSCSEEEECSGG--GCBHHHHHH----HHHTCCTTCEEEEEEC
T ss_pred Hhccchhhhh--hHhhhccCCCch-HHHhccCCCCCCCEEEEechh--hCCHHHHHH----HHHhCCCCCEEEEEcc
Confidence 0000000000 011222222211 011111122378999999999 666554443 3444455778887753
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.00 E-value=1.3e-05 Score=90.54 Aligned_cols=122 Identities=19% Similarity=0.356 Sum_probs=77.4
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccC---cee
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLG---EEV 81 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg---~~v 81 (704)
.+.+.|.+++..+..+++++|.|++|+||||.+..++..... .+.+|+++.|+..++..+.+.+ +.... ...
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~-~g~~Vl~~ApT~~Aa~~L~e~~----~~~a~Tih~ll 263 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAES-LGLEVGLCAPTGKAARRLGEVT----GRTASTVHRLL 263 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHH----TSCEEEHHHHT
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEecCcHHHHHHhHhhh----cccHHHHHHHH
Confidence 356788999999999999999999999999887766654332 3568889999998887665543 21100 000
Q ss_pred eeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEe
Q 005291 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (704)
Q Consensus 82 g~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~S 157 (704)
++.. . .+. ........+++|||||++ +++...+..+ +...+.+.++|++.
T Consensus 264 ~~~~---------~--~~~---------~~~~~~~~~dvlIIDEas--ml~~~~~~~L----l~~~~~~~~lilvG 313 (574)
T 3e1s_A 264 GYGP---------Q--GFR---------HNHLEPAPYDLLIVDEVS--MMGDALMLSL----LAAVPPGARVLLVG 313 (574)
T ss_dssp TEET---------T--EES---------CSSSSCCSCSEEEECCGG--GCCHHHHHHH----HTTSCTTCEEEEEE
T ss_pred cCCc---------c--hhh---------hhhcccccCCEEEEcCcc--CCCHHHHHHH----HHhCcCCCEEEEEe
Confidence 0000 0 000 001123468999999999 5776654443 33344466777764
No 97
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.93 E-value=3.7e-06 Score=85.93 Aligned_cols=62 Identities=24% Similarity=0.303 Sum_probs=47.1
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh-ccCcEEEEEecCCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASKLKILITSATLD 161 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~-~~~~kiI~~SATl~ 161 (704)
-.+.|+..|..+....+.+.+++|+||.- ..+|......+++.+.... ..+..+|+.|.-++
T Consensus 143 ~LSgGqkQRv~iAraL~~~P~lLlLDEPt-s~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 143 CLSFGQKKRVAIAGVLVMEPKVLILDEPT-AGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205 (275)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEECTT-TTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 36788888888777788999999999998 7899887666655555443 22678888888765
No 98
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.90 E-value=3.2e-05 Score=73.61 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=23.4
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
.++.+++.||+|+||||++..+.....
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988776653
No 99
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.88 E-value=8.4e-06 Score=80.82 Aligned_cols=61 Identities=11% Similarity=0.155 Sum_probs=46.3
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
-.+.|+..|..+....+.+.+++++||+- ..+|......++..+......+..+|+.|+.+
T Consensus 140 ~LSgGq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 200 (224)
T 2pcj_A 140 ELSGGEQQRVAIARALANEPILLFADEPT-GNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200 (224)
T ss_dssp GSCHHHHHHHHHHHHTTTCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 46788888888887889999999999998 78999877776666655543356677766653
No 100
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.85 E-value=5.1e-06 Score=84.07 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=48.7
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhcc
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~ 168 (704)
.-.+.|+..|..+....+.+++++++||+- ..+|......+++.+......+..+|+.|.- .+.+..+
T Consensus 145 ~~LSgGq~qRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tiiivtHd--~~~~~~~ 212 (256)
T 1vpl_A 145 STYSKGMVRKLLIARALMVNPRLAILDEPT-SGLDVLNAREVRKILKQASQEGLTILVSSHN--MLEVEFL 212 (256)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEEECC--HHHHTTT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-cccCHHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHH
Confidence 346788888888777788999999999998 7899988777666665554335667766654 3444444
No 101
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.83 E-value=2.6e-05 Score=85.96 Aligned_cols=129 Identities=17% Similarity=0.156 Sum_probs=73.5
Q ss_pred chHHHHHHHHHhcc----CC-EEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCce
Q 005291 6 ILQYEETIVETVEQ----NP-VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (704)
Q Consensus 6 i~~~~~~il~~l~~----~~-~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~ 80 (704)
+.+-|.+++..+.. ++ .++|.|+.|||||+++..++..........|+++.|+..++..+.+++ +...+..
T Consensus 26 Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~----~~~~~T~ 101 (459)
T 3upu_A 26 LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS----GKEASTI 101 (459)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH----SSCEEEH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh----ccchhhH
Confidence 44567777775532 23 999999999999988776665543332347889999998887776655 2211000
Q ss_pred ---eeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEe
Q 005291 81 ---VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (704)
Q Consensus 81 ---vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~S 157 (704)
.+...... ... ..+.. ...+.+..+++|||||+| .++...+..+++ ..+.+.+++++.
T Consensus 102 h~~~~~~~~~~----~~~-~~~~~--------~~~~~~~~~~~iiiDE~~--~~~~~~~~~l~~----~~~~~~~~~~vG 162 (459)
T 3upu_A 102 HSILKINPVTY----EEN-VLFEQ--------KEVPDLAKCRVLICDEVS--MYDRKLFKILLS----TIPPWCTIIGIG 162 (459)
T ss_dssp HHHHTEEEEEC----SSC-EEEEE--------CSCCCCSSCSEEEESCGG--GCCHHHHHHHHH----HSCTTCEEEEEE
T ss_pred HHHhccCcccc----ccc-chhcc--------cccccccCCCEEEEECch--hCCHHHHHHHHH----hccCCCEEEEEC
Confidence 00000000 000 01111 112356789999999999 466554443332 223356666665
No 102
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.83 E-value=6.1e-06 Score=87.25 Aligned_cols=61 Identities=21% Similarity=0.305 Sum_probs=46.5
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl~ 161 (704)
.+.|+..|..+....+.+++++++||+- ..+|......++..+..... .+..+|+.|.-++
T Consensus 164 LSGGqkQRVaIArAL~~~P~lLLlDEPT-s~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 164 LSGGQKQRVAIARALASNPKVLLCDQAT-SALDPATTRSILELLKDINRRLGLTILLITHEMD 225 (366)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCC-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 6788888888888889999999999998 78998876665555544432 2677888877654
No 103
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.83 E-value=7.8e-06 Score=82.28 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=46.4
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
-.+.|+..|..+....+.+.+++|+||+- ..+|......+++.+..... +..+|+.|.-++
T Consensus 145 ~LSgGq~qRv~iAraL~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~~~~-g~tviivtH~~~ 205 (247)
T 2ff7_A 145 GLSGGQRQRIAIARALVNNPKILIFDEAT-SALDYESEHVIMRNMHKICK-GRTVIIIAHRLS 205 (247)
T ss_dssp CCCHHHHHHHHHHHHHTTCCSEEEECCCC-SCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHcC-CCEEEEEeCCHH
Confidence 46778888877777788899999999998 78999877776666655543 677777776554
No 104
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.80 E-value=5.6e-05 Score=75.38 Aligned_cols=63 Identities=13% Similarity=0.219 Sum_probs=47.1
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl~ 161 (704)
.-.+.|+..|..+....+.+.+++|+||+- ..+|......+++.+...... +..+|+.|+-++
T Consensus 144 ~~LSgGq~QRv~iAral~~~p~llllDEPt-s~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 144 NQLSGGQQQRVAIARALANNPPIILADQPT-WALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 346788888888887788999999999998 789988776666655554332 567777777553
No 105
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.78 E-value=5.1e-06 Score=86.13 Aligned_cols=59 Identities=24% Similarity=0.304 Sum_probs=43.9
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.|+..|..+....+.+.+++|+||+- ..+|......+++.+..... +..+|+.|.-+
T Consensus 191 LSGGqrQRvaiARAL~~~p~iLlLDEPt-s~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l 249 (306)
T 3nh6_A 191 LSGGEKQRVAIARTILKAPGIILLDEAT-SALDTSNERAIQASLAKVCA-NRTTIVVAHRL 249 (306)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCS-SCCCHHHHHHHHHHHHHHHT-TSEEEEECCSH
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCc-ccCCHHHHHHHHHHHHHHcC-CCEEEEEEcCh
Confidence 5778877777777778889999999998 78998877776666655554 66666665543
No 106
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.77 E-value=2.1e-05 Score=77.21 Aligned_cols=140 Identities=22% Similarity=0.241 Sum_probs=78.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE---------------cc-hhhHHHHHHHHHH---HHHhCCcc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV---------------TQ-PRRVAAVSVARRV---AQELGVRL 77 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv---------------~~-P~r~la~~~a~rv---a~~~~~~v 77 (704)
+.+|+++.|+||+||||||++..+....... .+.|.+ .| |.-.....+.+.+ ....+...
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~-~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~ 110 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLKPL-KGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV 110 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCch
Confidence 5689999999999999999999887765443 233322 11 1000000111111 11111000
Q ss_pred -Cceeee---eeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEE
Q 005291 78 -GEEVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (704)
Q Consensus 78 -g~~vg~---~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~ki 153 (704)
...+-. ....+.. +..+.-.+.|+..|..+....+.+.+++++||+- ..+|......+++.+......+..+
T Consensus 111 ~~~~~~~~l~~~gl~~~---~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~~~~~g~ti 186 (214)
T 1sgw_A 111 NKNEIMDALESVEVLDL---KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV-VAIDEDSKHKVLKSILEILKEKGIV 186 (214)
T ss_dssp CHHHHHHHHHHTTCCCT---TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT-TTSCTTTHHHHHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHHHcCCCcC---CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 000000 0000111 2233446889998888888889999999999998 6888876666555554443224667
Q ss_pred EEEecCCC
Q 005291 154 LITSATLD 161 (704)
Q Consensus 154 I~~SATl~ 161 (704)
|+.|..++
T Consensus 187 iivtHd~~ 194 (214)
T 1sgw_A 187 IISSREEL 194 (214)
T ss_dssp EEEESSCC
T ss_pred EEEeCCHH
Confidence 77777654
No 107
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.76 E-value=0.00012 Score=73.78 Aligned_cols=148 Identities=22% Similarity=0.234 Sum_probs=81.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE-----EE-Ecc-hhhHHHHHHHHHHHHHh----CCc--cCce---
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-----IG-VTQ-PRRVAAVSVARRVAQEL----GVR--LGEE--- 80 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~-----il-v~~-P~r~la~~~a~rva~~~----~~~--vg~~--- 80 (704)
+..|+++.|+||+||||||++..+........|.. +. +-| |.-.....+.+.+.-.. +.. ....
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 107 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQ 107 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHH
Confidence 56899999999999999999998877655433221 22 222 10000001111111000 000 0000
Q ss_pred -eee---eeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEE
Q 005291 81 -VGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILI 155 (704)
Q Consensus 81 -vg~---~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~ 155 (704)
+.. ....+.. .+..+.-.+.|+..|..+....+.+.+++|+||+- ..+|......+++.+...... +..+|+
T Consensus 108 ~~~~~l~~~~l~~~--~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~l~~~~g~tvi~ 184 (253)
T 2nq2_C 108 VAMQALDYLNLTHL--AKREFTSLSGGQRQLILIARAIASECKLILLDEPT-SALDLANQDIVLSLLIDLAQSQNMTVVF 184 (253)
T ss_dssp HHHHHHHHTTCGGG--TTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSS-TTSCHHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred HHHHHHHHcCChHH--hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 000 0000000 11223346888888888777778889999999998 789998877766666555432 456777
Q ss_pred EecCCChHHHhccc
Q 005291 156 TSATLDGEKVSKFF 169 (704)
Q Consensus 156 ~SATl~~~~~~~~~ 169 (704)
.|..+ +.+..+.
T Consensus 185 vtHd~--~~~~~~~ 196 (253)
T 2nq2_C 185 TTHQP--NQVVAIA 196 (253)
T ss_dssp EESCH--HHHHHHC
T ss_pred EecCH--HHHHHhC
Confidence 66543 3344443
No 108
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.74 E-value=1.1e-05 Score=82.20 Aligned_cols=149 Identities=19% Similarity=0.139 Sum_probs=79.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhHH-HHHHHHHHH---HHhCCccCceeeeeeecc---
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVA-AVSVARRVA---QELGVRLGEEVGYAIRFE--- 88 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~l-a~~~a~rva---~~~~~~vg~~vg~~~~~~--- 88 (704)
+..|+++.|+||+||||||++..+........ |.|.+ -.+.... ..+..+.++ +........++...+.+.
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~-G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 112 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSH-GECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAP 112 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSCCSS-CEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC-cEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhh
Confidence 56899999999999999999998877665543 44433 2221110 011111110 000000000000000000
Q ss_pred --c----------------ccCcccceEEcchHHHHHHHHhCCCCC------CCceEEEeCCCcCCCCHHHHHHHHHHHH
Q 005291 89 --D----------------RTSERTLIKYLTDGVLLREILSNPDLS------PYSVIILDEAHERSLNTDILLGLVKRLV 144 (704)
Q Consensus 89 --~----------------~~~~~~~I~~~T~g~Ll~~l~~~~~l~------~~~~IIiDEaHer~l~~d~l~~llk~l~ 144 (704)
. ....+..+--.+.|+..|..+....+. +.+++|+||.- ..+|......+++.+.
T Consensus 113 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPt-s~LD~~~~~~i~~~l~ 191 (266)
T 4g1u_C 113 YGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPT-SALDLYHQQHTLRLLR 191 (266)
T ss_dssp SCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCC-SSCCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCcc-ccCCHHHHHHHHHHHH
Confidence 0 000112223367788877776666666 89999999998 7899887666666555
Q ss_pred HHhcc-CcEEEEEecCCChHHHhccc
Q 005291 145 NLRAS-KLKILITSATLDGEKVSKFF 169 (704)
Q Consensus 145 ~~~~~-~~kiI~~SATl~~~~~~~~~ 169 (704)
..... +..+|+.|+- .+.+..+.
T Consensus 192 ~l~~~~~~tvi~vtHd--l~~~~~~~ 215 (266)
T 4g1u_C 192 QLTRQEPLAVCCVLHD--LNLAALYA 215 (266)
T ss_dssp HHHHHSSEEEEEECSC--HHHHHHHC
T ss_pred HHHHcCCCEEEEEEcC--HHHHHHhC
Confidence 54332 3466666554 44444443
No 109
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.74 E-value=7.7e-06 Score=82.90 Aligned_cols=62 Identities=18% Similarity=0.310 Sum_probs=46.6
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
-.+.|+..|..+....+.+.+++|+||+- ..+|......+++.+......+..+|+.|+.++
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 214 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPI-AGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 36778877777776678889999999998 789998777766666554433677888777765
No 110
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.73 E-value=0.0001 Score=74.69 Aligned_cols=68 Identities=10% Similarity=0.174 Sum_probs=48.5
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhccc
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~~ 169 (704)
-.+.|+..|..+....+.+.+++|+||+- ..+|......+++.+......+..+|+.|.. .+.+..+.
T Consensus 159 ~LSgGqkQRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd--~~~~~~~~ 226 (263)
T 2olj_A 159 SLSGGQAQRVAIARALAMEPKIMLFDEPT-SALDPEMVGEVLSVMKQLANEGMTMVVVTHE--MGFAREVG 226 (263)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHTTCEEEEECSC--HHHHHHHC
T ss_pred hCCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHhC
Confidence 36788888888777788999999999998 7899988777666665554335666666654 34444443
No 111
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.70 E-value=2.1e-05 Score=80.25 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=45.4
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl 160 (704)
-.+.|+..|..+....+.+.+++++||+- ..+|......++..+..... .+..+|+.|..+
T Consensus 156 ~LSgGq~QRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~ 217 (271)
T 2ixe_A 156 QLSGGQRQAVALARALIRKPRLLILDNAT-SALDAGNQLRVQRLLYESPEWASRTVLLITQQL 217 (271)
T ss_dssp TSCHHHHHHHHHHHHHTTCCSEEEEESTT-TTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCc-cCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 36778888888777788999999999998 78999887776666655432 245666666543
No 112
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.68 E-value=0.0002 Score=70.50 Aligned_cols=115 Identities=20% Similarity=0.236 Sum_probs=65.9
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccce
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I 97 (704)
..|..+++.||+|+||||.+.+.+..... .+.++++++|...- + . ...+....|.. . ..+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~-~g~kVli~~~~~d~------r-~---~~~i~srlG~~--~-------~~~ 69 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEY-ADVKYLVFKPKIDT------R-S---IRNIQSRTGTS--L-------PSV 69 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCCG------G-G---CSSCCCCCCCS--S-------CCE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEEeccCc------h-H---HHHHHHhcCCC--c-------ccc
Confidence 45788999999999999999888876643 35577777774321 0 0 00111111210 0 112
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEec
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SA 158 (704)
.+.+...+...+.....-.++++|||||++ .++.+. ...+..+.. .+..+|+..-
T Consensus 70 ~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ--~l~~~~-ve~l~~L~~---~gi~Vil~Gl 124 (223)
T 2b8t_A 70 EVESAPEILNYIMSNSFNDETKVIGIDEVQ--FFDDRI-CEVANILAE---NGFVVIISGL 124 (223)
T ss_dssp EESSTHHHHHHHHSTTSCTTCCEEEECSGG--GSCTHH-HHHHHHHHH---TTCEEEEECC
T ss_pred ccCCHHHHHHHHHHHhhCCCCCEEEEecCc--cCcHHH-HHHHHHHHh---CCCeEEEEec
Confidence 234455565555544334568999999999 355443 333444433 2677777655
No 113
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.68 E-value=1.7e-05 Score=79.53 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=44.7
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
-.+.|+..|..+....+.+.+++++||+- ..+|......+++.+......+..+|+.|+.+
T Consensus 139 ~LSgGq~qrv~lAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~ 199 (240)
T 1ji0_A 139 TLSGGEQQMLAIGRALMSRPKLLMMDEPS-LGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199 (240)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEECTT-TTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 35677777777666678899999999998 78999887776666655443356777777654
No 114
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.64 E-value=8.2e-05 Score=73.42 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=31.5
Q ss_pred HHHHH-HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc
Q 005291 11 ETIVE-TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (704)
Q Consensus 11 ~~il~-~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~ 55 (704)
++++. .+..|++++|.||+||||||++..++.......+..+++.
T Consensus 13 d~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 13 DKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp HGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34443 5778999999999999999999888765443333333333
No 115
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.61 E-value=0.00031 Score=74.08 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=45.1
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl 160 (704)
-.+.|+..|..+....+.+.+++++||.- ..+|......+...+..... .+..+|+.|..+
T Consensus 145 ~LSGGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 206 (355)
T 1z47_A 145 ELSGGQQQRVALARALAPRPQVLLFDEPF-AAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ 206 (355)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEESTT-CCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH
Confidence 36888888888888888999999999998 78998876666555554432 156677766543
No 116
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.61 E-value=6e-05 Score=69.51 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
.++.+++.||+|+||||++..+.....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999887776543
No 117
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.59 E-value=2.3e-05 Score=79.80 Aligned_cols=62 Identities=16% Similarity=0.270 Sum_probs=47.4
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
-.+.|+..|..+....+.+.+++++||+- ..+|......++..+......+..+|+.|+.++
T Consensus 138 ~LSgGq~qRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~ 199 (266)
T 2yz2_A 138 FLSGGEKRRVAIASVIVHEPDILILDEPL-VGLDREGKTDLLRIVEKWKTLGKTVILISHDIE 199 (266)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCcc-ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 36778888877777788999999999998 789998877776666655433567777777654
No 118
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.58 E-value=0.00035 Score=73.76 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=45.6
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh-ccCcEEEEEecCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASKLKILITSATL 160 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~-~~~~kiI~~SATl 160 (704)
-.+.|+..|..+....+.+.+++++||.- ..+|......+...+.+.. ..+..+|+.|.-+
T Consensus 138 ~LSGGq~QRValArAL~~~P~lLLLDEPt-s~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~ 199 (359)
T 3fvq_A 138 ELSGGQQQRAALARALAPDPELILLDEPF-SALDEQLRRQIREDMIAALRANGKSAVFVSHDR 199 (359)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 36788888888888888999999999998 7899887666655554432 2267777776654
No 119
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.58 E-value=0.00019 Score=76.33 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=44.3
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
.+.|+..|..+......+.+++++||.- ..+|......+...+.+.... +..+|+.|.-+
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPt-s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~ 194 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPL-SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 6788888888777777889999999998 789988766655555544322 67777776654
No 120
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.58 E-value=6.8e-05 Score=85.18 Aligned_cols=61 Identities=26% Similarity=0.328 Sum_probs=47.4
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
-.+.|+..|..+....+.+.+++|+||+- ..+|......+.+.+..... +..+|+.|+-++
T Consensus 480 ~LSgGq~qr~~iAral~~~p~illlDEpt-s~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~ 540 (582)
T 3b5x_A 480 SLSGGQRQRVAIARALLRDAPVLILDEAT-SALDTESERAIQAALDELQK-NKTVLVIAHRLS 540 (582)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH
Confidence 36788888888887888999999999998 78999887776666665554 667777777653
No 121
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.57 E-value=0.00015 Score=74.24 Aligned_cols=62 Identities=23% Similarity=0.284 Sum_probs=44.8
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEE--EEEecCCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI--LITSATLD 161 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~ki--I~~SATl~ 161 (704)
-.+.|+..|..+....+.+.+++++||+- ..+|......+++.+......+..+ |+.|.-++
T Consensus 161 ~LSgGqkqRv~lAraL~~~p~lLlLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~ 224 (279)
T 2ihy_A 161 YLSTGEKQRVMIARALMGQPQVLILDEPA-AGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE 224 (279)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCc-cccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH
Confidence 36778888877777778889999999998 7899887666665555543324556 77766543
No 122
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.57 E-value=8.9e-06 Score=82.64 Aligned_cols=60 Identities=13% Similarity=0.274 Sum_probs=44.0
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.|+..|..+....+.+.+++++||+- ..+|......++..+......+..+|+.|..+
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 213 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPT-SALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 5777777777766678889999999998 78999877766666555443356677766654
No 123
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.56 E-value=2.5e-05 Score=78.65 Aligned_cols=147 Identities=23% Similarity=0.230 Sum_probs=79.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cchhhHH-HHHHHHHHH---HHhCCccCceeeeeeec----
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVA-AVSVARRVA---QELGVRLGEEVGYAIRF---- 87 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~P~r~l-a~~~a~rva---~~~~~~vg~~vg~~~~~---- 87 (704)
+..|+++.|+||+||||||++..+....... |.|.+ -.+.... ..+..++++ +........++...+.+
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 100 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTSGK--GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD 100 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc
Confidence 5689999999999999999999887766554 54444 2221110 011111110 00000000000000000
Q ss_pred ---ccc-----------cCcccceEEcchHHHHHHHHhCCCCCCCc-------eEEEeCCCcCCCCHHHHHHHHHHHHHH
Q 005291 88 ---EDR-----------TSERTLIKYLTDGVLLREILSNPDLSPYS-------VIILDEAHERSLNTDILLGLVKRLVNL 146 (704)
Q Consensus 88 ---~~~-----------~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~-------~IIiDEaHer~l~~d~l~~llk~l~~~ 146 (704)
... ...+..+.-.+.|+..|..+....+.+.+ ++++||.- ..+|......+++.+...
T Consensus 101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPt-s~LD~~~~~~l~~~l~~l 179 (249)
T 2qi9_C 101 KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPM-NSLDVAQQSALDKILSAL 179 (249)
T ss_dssp TTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTT-TTCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCc-ccCCHHHHHHHHHHHHHH
Confidence 000 00012233356777776666555666778 99999998 789998877766666555
Q ss_pred hccCcEEEEEecCCChHHHhcc
Q 005291 147 RASKLKILITSATLDGEKVSKF 168 (704)
Q Consensus 147 ~~~~~kiI~~SATl~~~~~~~~ 168 (704)
...+..+|+.|+- .+.+..+
T Consensus 180 ~~~g~tviivtHd--~~~~~~~ 199 (249)
T 2qi9_C 180 SQQGLAIVMSSHD--LNHTLRH 199 (249)
T ss_dssp HHTTCEEEEECSC--HHHHHHH
T ss_pred HhCCCEEEEEeCC--HHHHHHh
Confidence 4335566666554 3434444
No 124
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.50 E-value=0.00047 Score=73.00 Aligned_cols=61 Identities=18% Similarity=0.224 Sum_probs=45.5
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl 160 (704)
-.+.|+..|..+....+.+.+++++||.- ..+|......+...+..... .+..+|+.|+.+
T Consensus 133 ~LSGGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 194 (362)
T 2it1_A 133 QLSGGQQQRVAIARALVKEPEVLLLDEPL-SNLDALLRLEVRAELKRLQKELGITTVYVTHDQ 194 (362)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEESGG-GGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 36888888888887788999999999998 78998876666555554432 156777776654
No 125
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.50 E-value=4e-05 Score=87.37 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=46.8
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.|+..|..+....+.+.+++|+||+- ..+|......+.+.+..... +..+|+.|+-++
T Consensus 492 LSgGq~Qrv~iAral~~~p~illlDEpt-s~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~ 551 (598)
T 3qf4_B 492 LSQGQRQLLAITRAFLANPKILILDEAT-SNVDTKTEKSIQAAMWKLME-GKTSIIIAHRLN 551 (598)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEECCCC-TTCCHHHHHHHHHHHHHHHT-TSEEEEESCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCc-cCCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH
Confidence 4677777777777778889999999998 78998877776666665554 778888877765
No 126
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.49 E-value=0.00048 Score=72.84 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=45.3
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl 160 (704)
-.+.|+..|..+....+.+.+++++||.- ..+|......+...+..... .+..+|+.|+.+
T Consensus 133 ~LSgGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 194 (359)
T 2yyz_A 133 QLSGGQQQRVALARALVKQPKVLLFDEPL-SNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ 194 (359)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 36788888888877788999999999998 78998876666555554432 156777776654
No 127
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.49 E-value=2.3e-05 Score=83.39 Aligned_cols=60 Identities=15% Similarity=0.277 Sum_probs=42.9
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhcc-CcEEEEEecCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~-~~kiI~~SATl 160 (704)
.+.|+..|..+....+.+.+++++||.- ..+|......+...+...... +..+|+.|+.+
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 202 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPL-SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 202 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 5666667777666678899999999998 789988766665555544321 56777776654
No 128
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.48 E-value=2e-05 Score=79.48 Aligned_cols=61 Identities=16% Similarity=0.210 Sum_probs=42.6
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.|+..|..+....+.+.+++|+||+- ..+|......+++.+......+..+|+.|+.++
T Consensus 144 LSgGqkQrv~iAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 204 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTYAVLDETD-SGLDIDALKVVARGVNAMRGPNFGALVITHYQR 204 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECGG-GTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 5778777777666677788999999998 789998877776666655433567777777654
No 129
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.47 E-value=8e-05 Score=74.68 Aligned_cols=61 Identities=23% Similarity=0.226 Sum_probs=41.9
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.-.+.|+..|..+....+.+.+++++||+- ..+|......++..+..... +..+|+.|.-+
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~~~~-~~tvi~vtH~~ 198 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEAT-ASLDSESESMVQKALDSLMK-GRTTLVIAHRL 198 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCS-CSSCSSSCCHHHHHHHHHHT-TSEEEEECCSH
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCh
Confidence 346788888877777777788999999998 67777654444444433333 66777776654
No 130
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.46 E-value=3.6e-05 Score=78.06 Aligned_cols=61 Identities=25% Similarity=0.296 Sum_probs=45.4
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
-.+.|+..|..+....+.+.+++|+||+- ..+|......++..+..... +..+|+.|..++
T Consensus 155 ~LSgGqkqRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~ 215 (260)
T 2ghi_A 155 KLSGGERQRIAIARCLLKDPKIVIFDEAT-SSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLS 215 (260)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCC-CTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGG
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH
Confidence 46778877777766677888999999998 78999887776666655544 666777766543
No 131
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.45 E-value=0.00038 Score=69.49 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=45.2
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl 160 (704)
-.+.|+..|..+....+.+.+++++||+- ..+|......+++.+..... .+..+|+.|+.+
T Consensus 126 ~LSgGqkqRv~lAral~~~p~lllLDEPt-s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~ 187 (240)
T 2onk_A 126 RLSGGERQRVALARALVIQPRLLLLDEPL-SAVDLKTKGVLMEELRFVQREFDVPILHVTHDL 187 (240)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSSBEEESTT-SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 36788888888777788899999999998 78999876666655554432 156677776654
No 132
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.44 E-value=8.3e-05 Score=73.83 Aligned_cols=140 Identities=16% Similarity=0.185 Sum_probs=76.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE-----EEE-cchhhHHHHHHHHHH--------------HHHhCCc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-----IGV-TQPRRVAAVSVARRV--------------AQELGVR 76 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~-----ilv-~~P~r~la~~~a~rv--------------a~~~~~~ 76 (704)
+.+|+++.|+||+||||||++..++.......|.. +.+ -|........+.+.+ .+..+..
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~ 110 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLE 110 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcH
Confidence 56899999999999999999998877665443221 212 121000000111111 1111110
Q ss_pred cCceeeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEE
Q 005291 77 LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (704)
Q Consensus 77 vg~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~ 156 (704)
..+. .........-...+.-.+.|+..|..+....+.+.+++++||+- ..+|......+++.++.....+..+|+.
T Consensus 111 --~~~~-~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~~~~~~~tvi~v 186 (229)
T 2pze_A 111 --EDIS-KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF-GYLDVLTEKEIFESCVCKLMANKTRILV 186 (229)
T ss_dssp --HHHT-TSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT-TTSCHHHHHHHHHHCCCCCTTTSEEEEE
T ss_pred --HHHH-hCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc-cCCCHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 0000 00000000001122346888888888777788899999999998 7899887777665433222225567776
Q ss_pred ecCC
Q 005291 157 SATL 160 (704)
Q Consensus 157 SATl 160 (704)
|..+
T Consensus 187 tH~~ 190 (229)
T 2pze_A 187 TSKM 190 (229)
T ss_dssp CCCH
T ss_pred cCCh
Confidence 6554
No 133
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.44 E-value=0.00024 Score=80.73 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=46.6
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.|+..|..+....+.+.+++|+||+- ..+|......+.+.+..... +..+|+.|+-++
T Consensus 480 LSgGqrQrv~lARal~~~p~illlDEpt-s~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~ 539 (587)
T 3qf4_A 480 FSGGQKQRLSIARALVKKPKVLILDDCT-SSVDPITEKRILDGLKRYTK-GCTTFIITQKIP 539 (587)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESCC-TTSCHHHHHHHHHHHHHHST-TCEEEEEESCHH
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHHhCC-CCEEEEEecChH
Confidence 5778888887777788889999999998 78999887777666665554 777777776543
No 134
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.44 E-value=0.00018 Score=71.82 Aligned_cols=140 Identities=16% Similarity=0.258 Sum_probs=79.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE-----E-EEcchhhHHHHHHHHHH--------------HHHhCCc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-----I-GVTQPRRVAAVSVARRV--------------AQELGVR 76 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~-----i-lv~~P~r~la~~~a~rv--------------a~~~~~~ 76 (704)
+..|+++.|+||+||||||++..++.......|.. + ++.|........+.+.+ .+..+..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~ 107 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALL 107 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhH
Confidence 56899999999999999999998877654432221 1 22221100000111111 1111100
Q ss_pred cCceeeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHH---HHhccCcEE
Q 005291 77 LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV---NLRASKLKI 153 (704)
Q Consensus 77 vg~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~---~~~~~~~ki 153 (704)
..++. .........+..+.-.+.|+..|..+....+.+.+++|+||+- ..+|......+++.+. .... +..+
T Consensus 108 --~~~~~-~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~~~~~~~-~~tv 182 (237)
T 2cbz_A 108 --PDLEI-LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL-SAVDAHVGKHIFENVIGPKGMLK-NKTR 182 (237)
T ss_dssp --HHHTT-STTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT-TTSCHHHHHHHHHHTTSTTSTTT-TSEE
T ss_pred --HHHHh-ccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc-cccCHHHHHHHHHHHHHHHhhcC-CCEE
Confidence 00000 0000000011233447888888888777778889999999998 7899887777666663 2222 6678
Q ss_pred EEEecCCC
Q 005291 154 LITSATLD 161 (704)
Q Consensus 154 I~~SATl~ 161 (704)
|+.|..++
T Consensus 183 iivtH~~~ 190 (237)
T 2cbz_A 183 ILVTHSMS 190 (237)
T ss_dssp EEECSCST
T ss_pred EEEecChH
Confidence 88887765
No 135
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.43 E-value=0.00063 Score=72.36 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=44.7
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl 160 (704)
.+.|+..|..+....+.+.+++++||.- ..+|......+...+.+... .+..+|+.|+.+
T Consensus 140 LSGGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 200 (372)
T 1g29_1 140 LSGGQRQRVALGRAIVRKPQVFLMDEPL-SNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ 200 (372)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTT-TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCC-ccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH
Confidence 6788888888777778889999999998 78999876666555544432 256777777654
No 136
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.43 E-value=0.00018 Score=72.97 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=44.9
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+--.+.|+..|..+....+.+.+++++||+- ..+|......+++.+.... . .+|+.|+.+
T Consensus 126 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~L~~~~--~-tviivtHd~ 185 (263)
T 2pjz_A 126 LYKLSAGQSVLVRTSLALASQPEIVGLDEPF-ENVDAARRHVISRYIKEYG--K-EGILVTHEL 185 (263)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCSEEEEECTT-TTCCHHHHHHHHHHHHHSC--S-EEEEEESCG
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEECCc-cccCHHHHHHHHHHHHHhc--C-cEEEEEcCH
Confidence 3346888888888777778889999999998 7899988777666655443 3 677766654
No 137
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.42 E-value=4.7e-05 Score=71.92 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=20.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHH
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQ 39 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~ 39 (704)
+.+|+.++++||+||||||++..
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 56889999999999999999985
No 138
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.41 E-value=0.00034 Score=71.10 Aligned_cols=61 Identities=21% Similarity=0.243 Sum_probs=45.6
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.|+..|..+....+.+.+++|+||+- ..+|......+++.+......+..+|+.|..++
T Consensus 165 LSgGq~QRv~iAraL~~~p~lLlLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~ 225 (267)
T 2zu0_C 165 FSGGEKKRNDILQMAVLEPELCILDESD-SGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225 (267)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTT-TTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence 6788888877777777888999999998 789998877777666555433566777666543
No 139
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.39 E-value=0.00097 Score=72.17 Aligned_cols=123 Identities=18% Similarity=0.217 Sum_probs=72.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE--cchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccce
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV--TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv--~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I 97 (704)
+.+++++|++|+||||.+..+....... +.+|++ .-+.|..+.+....++...+..+.. . .. .
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~-G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~-----~--~~---~---- 161 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR-GYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYG-----E--PN---N---- 161 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCSCHHHHHHHHHHHHTTTCCEEC-----C--TT---C----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEecCccchhHHHHHHHHHHhcCCceee-----c--cc---c----
Confidence 4589999999999998887776655433 344433 3466777777666666655543210 0 00 0
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCC--CCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERS--LNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~--l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
..+..+...........++++||||++-... .+..+... +..+.....++..+++++|+.
T Consensus 162 --~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~e-l~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 162 --QNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEE-MKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp --SCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHH-HHHHHHHHCCSEEEEEEEGGG
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHH-HHHHHHhhCCcceEEEEeCcc
Confidence 1122233233333334689999999997333 45544444 444544444477788888876
No 140
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.38 E-value=5.1e-05 Score=86.22 Aligned_cols=61 Identities=25% Similarity=0.307 Sum_probs=46.8
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
-.+.|+..|..+....+.+.+++|+||+- ..+|......+.+.+.+... +..+|+.|+-++
T Consensus 480 ~LSgGq~qrl~iAral~~~p~illlDEpt-s~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~ 540 (582)
T 3b60_A 480 LLSGGQRQRIAIARALLRDSPILILDEAT-SALDTESERAIQAALDELQK-NRTSLVIAHRLS 540 (582)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSEEEEETTT-SSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECcc-ccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHH
Confidence 36778888777777778889999999998 78999887776666665554 677888777654
No 141
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.37 E-value=0.00054 Score=72.38 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=44.8
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl 160 (704)
-.+.|+..|..+....+.+.+++++||.- ..+|......+...+..... .+..+|+.|+.+
T Consensus 140 ~LSGGq~QRvalAraL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 201 (353)
T 1oxx_K 140 ELSGAQQQRVALARALVKDPSLLLLDEPF-SNLDARMRDSARALVKEVQSRLGVTLLVVSHDP 201 (353)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 36788888888877788999999999998 78888776665555544332 156777776654
No 142
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.37 E-value=0.00026 Score=74.61 Aligned_cols=140 Identities=22% Similarity=0.240 Sum_probs=79.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc-c------hhhH----------H--HHHHHHHHH---HHhC
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT-Q------PRRV----------A--AVSVARRVA---QELG 74 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~-~------P~r~----------l--a~~~a~rva---~~~~ 74 (704)
+.+|+++.|.||+||||||++..+....... .+.|.+- . |.+. + -..+.+.++ ...+
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~ 101 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK 101 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSCCS-EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCCCC-CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC
Confidence 5689999999999999999999888766543 3333321 0 1000 0 000111110 0001
Q ss_pred CccCceeee---eeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cC
Q 005291 75 VRLGEEVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SK 150 (704)
Q Consensus 75 ~~vg~~vg~---~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~ 150 (704)
......+.. .+..+.. .+..+--.+.|+..|..+....+.+.+++++||.- ..+|......+...+..... .+
T Consensus 102 ~~~~~~v~~~l~~~~L~~~--~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~-s~LD~~~~~~l~~~l~~l~~~~g 178 (348)
T 3d31_A 102 IKDPKRVLDTARDLKIEHL--LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL-SALDPRTQENAREMLSVLHKKNK 178 (348)
T ss_dssp CCCHHHHHHHHHHTTCTTT--TTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS-TTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHcCCchH--hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHHHhcC
Confidence 000000000 0000000 11223336888888888888889999999999998 78999876666555554432 25
Q ss_pred cEEEEEecCC
Q 005291 151 LKILITSATL 160 (704)
Q Consensus 151 ~kiI~~SATl 160 (704)
..+|+.|+.+
T Consensus 179 ~tii~vTHd~ 188 (348)
T 3d31_A 179 LTVLHITHDQ 188 (348)
T ss_dssp CEEEEEESCH
T ss_pred CEEEEEeCCH
Confidence 6777777654
No 143
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.37 E-value=0.00071 Score=72.23 Aligned_cols=116 Identities=16% Similarity=0.253 Sum_probs=61.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcc-hhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccceEEc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ-PRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKYL 100 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~-P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I~~~ 100 (704)
.++|.||+|+||||++..+........+..++.+. .......++...+...++..... .| .
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~-~~-----------------~ 107 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPR-RG-----------------L 107 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCS-SC-----------------C
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCC-CC-----------------C
Confidence 89999999999999998877765432122333332 22122234444444444322100 00 0
Q ss_pred chHH----HHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc---cCcEEEEEecCC
Q 005291 101 TDGV----LLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA---SKLKILITSATL 160 (704)
Q Consensus 101 T~g~----Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~---~~~kiI~~SATl 160 (704)
+.+. +...+.. .....+|||||+|. ++.+.+..+++.+..... .++.+|+.|...
T Consensus 108 ~~~~~~~~l~~~l~~---~~~~~vlilDE~~~--l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 108 SRDEFLALLVEHLRE---RDLYMFLVLDDAFN--LAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp CHHHHHHHHHHHHHH---TTCCEEEEEETGGG--SCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CHHHHHHHHHHHHhh---cCCeEEEEEECccc--cchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 1122 2222222 23467999999993 466665554444422221 266777766554
No 144
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.36 E-value=0.00052 Score=70.74 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=34.6
Q ss_pred HHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE
Q 005291 10 EETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (704)
Q Consensus 10 ~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv 54 (704)
-+.+.-.+..|+.++|.||+|+||||++.+++.......+..+++
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~ 69 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGL 69 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEE
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 345556688999999999999999999998888765544434443
No 145
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.36 E-value=0.00034 Score=66.86 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=30.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchh
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR 58 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~ 58 (704)
.+...++.||.|+||||.+...+..... .+.++++++|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~-~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL-GKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH-TTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeec
Confidence 4778999999999999998777765432 34578888886
No 146
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.00098 Score=69.19 Aligned_cols=123 Identities=14% Similarity=0.093 Sum_probs=64.4
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCC------CcEEEEc-chhhHHHHHHHHHHHHHhCCccCceeeeeeeccccc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTK------SGIIGVT-QPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRT 91 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~~~~------~~~ilv~-~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~ 91 (704)
.+.+++|.||+|+|||+.+..++.+..... .-.++.+ ...-....+++..+.+.+. |....
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~---g~~~~--------- 111 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAIS---KENLC--------- 111 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHS---CCC-----------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhc---CCCCC---------
Confidence 567899999999999988887776553211 1122222 1211222333444444332 11000
Q ss_pred CcccceEEcchHHHHHHHHhCC-CCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 92 SERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 92 ~~~~~I~~~T~g~Ll~~l~~~~-~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.. .+...|.+.+...+ .-...-+|++||+|. ....+.+..+++.. .....++-+|+.++|++
T Consensus 112 ~~------~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~-l~~q~~L~~l~~~~-~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 112 GD------ISLEALNFYITNVPKAKKRKTLILIQNPEN-LLSEKILQYFEKWI-SSKNSKLSIICVGGHNV 174 (318)
T ss_dssp CC------CCHHHHHHHHHHSCGGGSCEEEEEEECCSS-SCCTHHHHHHHHHH-HCSSCCEEEEEECCSSC
T ss_pred ch------HHHHHHHHHHHHhhhccCCceEEEEecHHH-hhcchHHHHHHhcc-cccCCcEEEEEEecCcc
Confidence 00 01223333333211 123467999999994 44777777766532 22222567888899985
No 147
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00049 Score=77.97 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=45.9
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+.-.+.|+..+..+....+.+.+++|+||.- ..+|......+.+.+......+..+|+.|+-+
T Consensus 219 ~~~LSgGe~Qrv~iAraL~~~p~llllDEPt-s~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl 281 (608)
T 3j16_B 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPS-SYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL 281 (608)
T ss_dssp TTTCCHHHHHHHHHHHHHHSCCSEEEEECTT-TTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH
T ss_pred hHHCCHHHHHHHHHHHHHHhCCCEEEEECcc-cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3446788888877777778889999999998 68898877666666655544356677776654
No 148
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.34 E-value=0.00066 Score=71.19 Aligned_cols=117 Identities=20% Similarity=0.178 Sum_probs=65.6
Q ss_pred HHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCc-cCceeeeeeeccc
Q 005291 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR-LGEEVGYAIRFED 89 (704)
Q Consensus 11 ~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~-vg~~vg~~~~~~~ 89 (704)
+.+--.+..|++++|+|||||||||++..++...... .+.|.+--+. + .... ....+++-.
T Consensus 162 ~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~-e------------~~~~~~~~~i~~~~---- 223 (330)
T 2pt7_A 162 SAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTE-E------------IVFKHHKNYTQLFF---- 223 (330)
T ss_dssp HHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSC-C------------CCCSSCSSEEEEEC----
T ss_pred hhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCee-c------------cccccchhEEEEEe----
Confidence 3444567789999999999999999998877766543 4455443221 1 1111 111222110
Q ss_pred ccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHH
Q 005291 90 RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEK 164 (704)
Q Consensus 90 ~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~ 164 (704)
-.|+-.+..+......+.+++|+||+- + .. ...+++.+ ......+++.++..+...
T Consensus 224 -----------ggg~~~r~~la~aL~~~p~ilildE~~--~--~e-~~~~l~~~---~~g~~tvi~t~H~~~~~~ 279 (330)
T 2pt7_A 224 -----------GGNITSADCLKSCLRMRPDRIILGELR--S--SE-AYDFYNVL---CSGHKGTLTTLHAGSSEE 279 (330)
T ss_dssp -----------BTTBCHHHHHHHHTTSCCSEEEECCCC--S--TH-HHHHHHHH---HTTCCCEEEEEECSSHHH
T ss_pred -----------CCChhHHHHHHHHhhhCCCEEEEcCCC--h--HH-HHHHHHHH---hcCCCEEEEEEcccHHHH
Confidence 023333444444456788999999996 3 12 22333333 221334777777776443
No 149
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.31 E-value=0.00065 Score=71.88 Aligned_cols=38 Identities=39% Similarity=0.372 Sum_probs=28.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv 54 (704)
...+..++|+|||||||||++..++.......++.|+.
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t 157 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT 157 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEE
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEE
Confidence 35677999999999999999988877665443455543
No 150
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.31 E-value=0.00027 Score=70.56 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=24.4
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHH
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILH 42 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~ 42 (704)
.+..|++++|.||+||||||++..++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 578899999999999999999988873
No 151
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.30 E-value=5.1e-05 Score=86.13 Aligned_cols=60 Identities=25% Similarity=0.233 Sum_probs=43.1
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.|+..|..+....+.+.+++|+||+- ..+|......+.+.+..... +..+|+.|+-++
T Consensus 478 LSgGq~Qrv~lAral~~~p~illlDEpt-s~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~ 537 (578)
T 4a82_A 478 LSGGQKQRLSIARIFLNNPPILILDEAT-SALDLESESIIQEALDVLSK-DRTTLIVAHRLS 537 (578)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTT-TTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH
Confidence 5677777777776677888999999998 78998876655555544444 666777666543
No 152
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.28 E-value=0.00075 Score=65.13 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
..++|.||+|+|||+++..+.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 7899999999999998877766554
No 153
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.24 E-value=7.2e-05 Score=85.24 Aligned_cols=60 Identities=22% Similarity=0.264 Sum_probs=45.7
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
-.+.|+..|..+....+.+.+++|+||+- ..+|......+.+.+..... +..+|+.|+-+
T Consensus 483 ~LSgGq~qrv~iAral~~~p~illlDEpt-s~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~ 542 (595)
T 2yl4_A 483 LLSGGQKQRIAIARALLKNPKILLLDEAT-SALDAENEYLVQEALDRLMD-GRTVLVIAHRL 542 (595)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCC-SSCCHHHHHHHHHHHHHHHT-TSEEEEECCCH
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECcc-cCCCHHHHHHHHHHHHHHhc-CCEEEEEecCH
Confidence 46788888877777778889999999998 78999877776666665554 66677776654
No 154
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.23 E-value=0.0013 Score=71.12 Aligned_cols=123 Identities=18% Similarity=0.238 Sum_probs=71.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEE--EcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccce
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG--VTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~il--v~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I 97 (704)
..+++++|++|+||||.+..+...... .+.+++ ..-|.|..+.+..+.++...+..+. .. ...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~-~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~-----~~----~~~----- 164 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK-RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF-----GN----PQE----- 164 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEE-----CC----TTC-----
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEE-----ec----CCC-----
Confidence 458999999999999887776655443 244443 3457788887777777665554321 00 000
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
..+..+.+.......-.++++||||.+=....+.. +..-++.+.....++..+++++||.
T Consensus 165 --~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~-lm~el~~i~~~~~pd~vlLVvDA~~ 224 (443)
T 3dm5_A 165 --KDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKA-LIEEMKQISNVIHPHEVILVIDGTI 224 (443)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHH-HHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHH-HHHHHHHHHHhhcCceEEEEEeCCC
Confidence 11222222211111123589999999973233433 4444555555444477888888886
No 155
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.23 E-value=0.0011 Score=68.42 Aligned_cols=127 Identities=24% Similarity=0.293 Sum_probs=67.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE--cchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV--TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv--~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~ 96 (704)
.+++++++||+|+||||++..+........|.+|++ .-+.+..+.+....+++..+..+.. .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~--~-------------- 167 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEV--C-------------- 167 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCB--C--------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEe--c--------------
Confidence 477999999999999999887776654333434433 3355555554444444433332100 0
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhcc
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~ 168 (704)
..+..+...+. .+.++++||+|.+- +.........-+..++.....+..++++.||.....+.++
T Consensus 168 ---~~~~~l~~al~---~~~~~dlvIiDT~G-~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~ 232 (296)
T 2px0_A 168 ---YTKEEFQQAKE---LFSEYDHVFVDTAG-RNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHI 232 (296)
T ss_dssp ---SSHHHHHHHHH---HGGGSSEEEEECCC-CCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHH
T ss_pred ---CCHHHHHHHHH---HhcCCCEEEEeCCC-CChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHH
Confidence 11222322222 13678999999775 3322222222233332211124457888788765555443
No 156
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.21 E-value=0.0003 Score=69.29 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=26.1
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
.+..|+++.|+||+||||||++..++....
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999999998887543
No 157
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.19 E-value=0.0021 Score=66.50 Aligned_cols=126 Identities=16% Similarity=0.243 Sum_probs=67.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc-chhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccce
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT-QPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~-~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I 97 (704)
.+++++++||+|+||||.+..+........+...++. -+.|..+.+....+.+..+..+ + . . ....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~---~----~-~-~s~~---- 169 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATV---I----S-H-SEGA---- 169 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE---E----C-C-STTC----
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcE---E----e-c-CCcc----
Confidence 3568999999999999988877766544333333333 3556665555455555555432 0 0 0 0000
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh----c--cCcEEEEEecCCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR----A--SKLKILITSATLD 161 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~----~--~~~kiI~~SATl~ 161 (704)
.+..+....+......++++||+||+- +....+.+...++.+.... + ++..++.+.|+..
T Consensus 170 ---~~~~v~~~al~~a~~~~~dvvIiDtpg-~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~ 235 (306)
T 1vma_A 170 ---DPAAVAFDAVAHALARNKDVVIIDTAG-RLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG 235 (306)
T ss_dssp ---CHHHHHHHHHHHHHHTTCSEEEEEECC-CCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH
T ss_pred ---CHHHHHHHHHHHHHhcCCCEEEEECCC-chhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC
Confidence 111111111111123568999999997 5544555555555554432 1 2445677777743
No 158
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.16 E-value=0.00073 Score=65.94 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=27.1
Q ss_pred HHHHH-HhccCCEEEEEcCCCCcHHHHHHHHHH
Q 005291 11 ETIVE-TVEQNPVVVVIGETGSGKSTQLSQILH 42 (704)
Q Consensus 11 ~~il~-~l~~~~~vii~gpTGsGKTt~l~~~l~ 42 (704)
++++. .+..|+.++|.||+|+||||++.+++.
T Consensus 10 D~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 10 DSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44454 577899999999999999999998887
No 159
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.15 E-value=0.00049 Score=76.99 Aligned_cols=141 Identities=13% Similarity=0.193 Sum_probs=80.1
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcE------EEEcchhhHH---HHHHHHHHHHHhCCccCc---eeee-
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI------IGVTQPRRVA---AVSVARRVAQELGVRLGE---EVGY- 83 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~------ilv~~P~r~l---a~~~a~rva~~~~~~vg~---~vg~- 83 (704)
+..|+++.|+||+||||||++..+........|.. +.++ |.... ...+.+.+.......... .+..
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~-~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~ 369 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYK-PQRIFPNYDGTVQQYLENASKDALSTSSWFFEEV 369 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEE-CSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEee-chhcccccCCCHHHHHHHhhhhccchhHHHHHHH
Confidence 46799999999999999999998887665543322 2111 11000 001111111110000000 0000
Q ss_pred --eeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc-cCcEEEEEecCC
Q 005291 84 --AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (704)
Q Consensus 84 --~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~-~~~kiI~~SATl 160 (704)
.+... ...+..+--.+.|+..|..+....+.+.+++|+||.- ..+|......+++.+..... .+..+|+.|.-+
T Consensus 370 l~~~~l~--~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT-~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl 446 (538)
T 3ozx_A 370 TKRLNLH--RLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS-SYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL 446 (538)
T ss_dssp TTTTTGG--GCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHcCCH--HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 00000 0112334457889988888877788899999999998 78999876666655554432 256677776654
Q ss_pred C
Q 005291 161 D 161 (704)
Q Consensus 161 ~ 161 (704)
+
T Consensus 447 ~ 447 (538)
T 3ozx_A 447 S 447 (538)
T ss_dssp H
T ss_pred H
Confidence 3
No 160
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.15 E-value=0.00079 Score=68.76 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=25.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+..|++++|.||+||||||++.+++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46688999999999999999998888644
No 161
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.14 E-value=0.00075 Score=64.76 Aligned_cols=40 Identities=30% Similarity=0.375 Sum_probs=31.9
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchh
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR 58 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~ 58 (704)
..|+..++.||.||||||.+...+.... ..+.++++++|.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k~~ 45 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFKPE 45 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEec
Confidence 4577999999999999998888777653 245688888886
No 162
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.14 E-value=0.00096 Score=74.72 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=43.7
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
-.+.|+..+..+....+.+.+++|+||.- ..+|......++..+......+..+|+.|.-+
T Consensus 158 ~LSgGekQRv~iAraL~~~P~lLlLDEPT-s~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~ 218 (538)
T 1yqt_A 158 HLSGGELQRVAIAAALLRNATFYFFDEPS-SYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL 218 (538)
T ss_dssp GCCHHHHHHHHHHHHHHSCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 35778888877777778889999999998 68888765555444444333367788877754
No 163
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.14 E-value=0.0014 Score=68.72 Aligned_cols=34 Identities=9% Similarity=0.160 Sum_probs=25.1
Q ss_pred HHHHHhccCC---EEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 12 TIVETVEQNP---VVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 12 ~il~~l~~~~---~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
.+...+.+|+ .+++.||+|+|||+++..+.....
T Consensus 13 ~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 13 KLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp HHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 3444555554 589999999999998887766543
No 164
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.13 E-value=0.0018 Score=70.11 Aligned_cols=59 Identities=15% Similarity=0.282 Sum_probs=43.3
Q ss_pred cchHHHHHHHHhCCCCCCC--ceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 100 LTDGVLLREILSNPDLSPY--SVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~--~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
++.|...+..+....+.+. .++|+||+. ..+|......+...+..... +.++|+.|+.+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt-~~LD~~~~~~l~~~L~~l~~-~~~vi~itH~~ 356 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVD-AGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLA 356 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTT-TTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHhC-CCEEEEEeCcH
Confidence 5888776665443334445 999999998 78999888777777766653 78999988763
No 165
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.13 E-value=0.002 Score=73.00 Aligned_cols=137 Identities=18% Similarity=0.247 Sum_probs=80.4
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc-----EE-EEcchhh----HHHHHHHHHH-HHHhCC-----ccCce
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG-----II-GVTQPRR----VAAVSVARRV-AQELGV-----RLGEE 80 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~-----~i-lv~~P~r----~la~~~a~rv-a~~~~~-----~vg~~ 80 (704)
+..|+++.|+||+||||||++..+........|. .+ ++.|... ..+.+..... ...... ..-..
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 458 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP 458 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 4679999999999999999999888766543332 12 2222110 0111111111 000000 00000
Q ss_pred eeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh-ccCcEEEEEecC
Q 005291 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASKLKILITSAT 159 (704)
Q Consensus 81 vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~-~~~~kiI~~SAT 159 (704)
+| ... .....+.-.+.|...|..+....+.+.+++|+||.- ..+|......+++.+.... ..+..+|+.|+.
T Consensus 459 ~~----l~~--~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt-~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd 531 (607)
T 3bk7_A 459 LG----IID--LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS-AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 531 (607)
T ss_dssp HT----CTT--TTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT-TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cC----Cch--HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 11 111 112334457889998888887788899999999998 7899987666665555442 225677777665
Q ss_pred C
Q 005291 160 L 160 (704)
Q Consensus 160 l 160 (704)
+
T Consensus 532 ~ 532 (607)
T 3bk7_A 532 V 532 (607)
T ss_dssp H
T ss_pred H
Confidence 4
No 166
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.12 E-value=0.0023 Score=62.76 Aligned_cols=36 Identities=11% Similarity=0.177 Sum_probs=26.8
Q ss_pred HHHHHHHhccCC---EEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 10 EETIVETVEQNP---VVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 10 ~~~il~~l~~~~---~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
.+.+...+..++ .++|.||+|+||||++..+.....
T Consensus 32 ~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 32 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345555555555 799999999999999887766543
No 167
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.12 E-value=0.00021 Score=73.48 Aligned_cols=140 Identities=15% Similarity=0.163 Sum_probs=75.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc-----EE-EEcchhhHHHHHHHHHHH-------------HHhCCcc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG-----II-GVTQPRRVAAVSVARRVA-------------QELGVRL 77 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~-----~i-lv~~P~r~la~~~a~rva-------------~~~~~~v 77 (704)
+..|+.+.|+||+||||||++..++.......|. .+ ++.|........+.+.+. +..+..
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l~- 139 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLE- 139 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTTCH-
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhChH-
Confidence 4578999999999999999999887765433222 12 222211000001111111 111100
Q ss_pred CceeeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEe
Q 005291 78 GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (704)
Q Consensus 78 g~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~S 157 (704)
.... .........-...+.-.+.|+..|..+....+.+.+++++||+- ..+|......+++.++.....+..+|+.|
T Consensus 140 -~~l~-~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~i~~~ll~~~~~~~tviivt 216 (290)
T 2bbs_A 140 -EDIS-KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF-GYLDVLTEKEIFESCVCKLMANKTRILVT 216 (290)
T ss_dssp -HHHH-TSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTT-TTCCHHHHHHHHHHCCCCCTTTSEEEEEC
T ss_pred -HHHH-hccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCc-ccCCHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence 0000 00000000001123347889888888777788889999999998 78998887776654332222256677766
Q ss_pred cCC
Q 005291 158 ATL 160 (704)
Q Consensus 158 ATl 160 (704)
..+
T Consensus 217 Hd~ 219 (290)
T 2bbs_A 217 SKM 219 (290)
T ss_dssp CCH
T ss_pred cCH
Confidence 654
No 168
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.11 E-value=0.00065 Score=76.10 Aligned_cols=144 Identities=17% Similarity=0.223 Sum_probs=84.4
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc------EEEEcchhh----HHHHHHHHHH-HHHhCC-----ccCce
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG------IIGVTQPRR----VAAVSVARRV-AQELGV-----RLGEE 80 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~------~ilv~~P~r----~la~~~a~rv-a~~~~~-----~vg~~ 80 (704)
+..|+++.|+||+||||||++..+........|. ..++.|... ..+.+..... ...... ..-..
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~ 388 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKP 388 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 4579999999999999999999888766543332 223333211 0112222111 000000 00011
Q ss_pred eeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh-ccCcEEEEEecC
Q 005291 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASKLKILITSAT 159 (704)
Q Consensus 81 vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~-~~~~kiI~~SAT 159 (704)
+|. .. .....+--.+.|...+..+....+.+.+++|+||.- ..+|......+++.+.... ..+..+|+.|.-
T Consensus 389 ~~l----~~--~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt-~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd 461 (538)
T 1yqt_A 389 LGI----ID--LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPS-AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 461 (538)
T ss_dssp TTC----GG--GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT-TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred cCC----hh--hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 110 00 112334457889888888877788899999999998 7899988766665555432 125677877765
Q ss_pred CChHHHhccc
Q 005291 160 LDGEKVSKFF 169 (704)
Q Consensus 160 l~~~~~~~~~ 169 (704)
+ +.+..+.
T Consensus 462 ~--~~~~~~~ 469 (538)
T 1yqt_A 462 V--LMIDYVS 469 (538)
T ss_dssp H--HHHHHHC
T ss_pred H--HHHHHhC
Confidence 4 3344443
No 169
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.11 E-value=0.0016 Score=59.28 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHh
Q 005291 7 LQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 7 ~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
...++.+-.....+..++|.||+|+|||+++..+...
T Consensus 11 ~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 11 NQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp HHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3445555555667888999999999999888765443
No 170
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.07 E-value=9.5e-05 Score=79.16 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=44.5
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.|+..|..+....+.+.+++++||.- ..+|......+...+..... +..+|+.|.-+
T Consensus 156 LSGGqrQRvalARAL~~~P~lLLLDEPt-s~LD~~~~~~l~~~l~~~~~-~~tvi~vtHd~ 214 (390)
T 3gd7_A 156 LSHGHKQLMCLARSVLSKAKILLLDEPS-AHLDPVTYQIIRRTLKQAFA-DCTVILCEARI 214 (390)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEESHH-HHSCHHHHHHHHHHHHTTTT-TSCEEEECSSS
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHhC-CCEEEEEEcCH
Confidence 5788888888777788889999999997 67888777776665555443 66777776654
No 171
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.04 E-value=0.0023 Score=60.70 Aligned_cols=69 Identities=12% Similarity=-0.049 Sum_probs=38.5
Q ss_pred eEEcchHHHHHHHHhCC-----CCCCCceEEEeCCC-cCCCCHHHHHHHHHHHHHHhccCcEEEEEec-CCChHHHhcc
Q 005291 97 IKYLTDGVLLREILSNP-----DLSPYSVIILDEAH-ERSLNTDILLGLVKRLVNLRASKLKILITSA-TLDGEKVSKF 168 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~-----~l~~~~~IIiDEaH-er~l~~d~l~~llk~l~~~~~~~~kiI~~SA-Tl~~~~~~~~ 168 (704)
+.-.+.|+..+..+... ...+.+++|+||++ ...+|..+...+.+.+ .. . +..+|+.|. |-+...+..+
T Consensus 74 ~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l-~~-~-~~~~i~~~H~~h~~~~~~~i 149 (178)
T 1ye8_A 74 GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIM-HD-P-NVNVVATIPIRDVHPLVKEI 149 (178)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHH-TC-T-TSEEEEECCSSCCSHHHHHH
T ss_pred ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHH-hc-C-CCeEEEEEccCCCchHHHHH
Confidence 33355676655444332 46678999999954 1345655554443333 32 2 455777776 5554444443
No 172
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.0026 Score=72.09 Aligned_cols=137 Identities=15% Similarity=0.170 Sum_probs=78.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc-----EE-EEcchhh----HHHHHHHHHHHHHhCCcc-Cce-ee---e
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSG-----II-GVTQPRR----VAAVSVARRVAQELGVRL-GEE-VG---Y 83 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~-----~i-lv~~P~r----~la~~~a~rva~~~~~~v-g~~-vg---~ 83 (704)
.|+++.|.||+||||||++..+........|. .+ .+-|-.. ..+.+. +........ ... +. .
T Consensus 377 ~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~---~~~~~~~~~~~~~~~~~~l~ 453 (608)
T 3j16_B 377 DSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQL---FFKKIRGQFLNPQFQTDVVK 453 (608)
T ss_dssp TTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHH---HHHHCSSTTTSHHHHHHTHH
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHH---HHHHhhcccccHHHHHHHHH
Confidence 45889999999999999999888776554332 12 2211100 001111 111100000 000 00 0
Q ss_pred eeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh-ccCcEEEEEecCCC
Q 005291 84 AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASKLKILITSATLD 161 (704)
Q Consensus 84 ~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~-~~~~kiI~~SATl~ 161 (704)
.+... ...+..+--.+.|...|..+......+.+++++||.- ..+|......+++.+.... ..+..+|+.|+-++
T Consensus 454 ~l~l~--~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT-~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~ 529 (608)
T 3j16_B 454 PLRID--DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPS-AYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI 529 (608)
T ss_dssp HHTST--TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTT-TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred HcCCh--hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 00000 0112334457899999998888889999999999998 7899887666555554432 12567777776543
No 173
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.01 E-value=0.0013 Score=74.55 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=44.9
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
-.+.|+..|..+....+.+.+++++||.- ..+|......+++.+......+..+|+.|+-+
T Consensus 228 ~LSGGekQRvaIAraL~~~P~lLlLDEPT-s~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl 288 (607)
T 3bk7_A 228 QLSGGELQRVAIAAALLRKAHFYFFDEPS-SYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 288 (607)
T ss_dssp GCCHHHHHHHHHHHHHHSCCSEEEEECTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHhcCCEEEEEecCh
Confidence 35788888888777778899999999998 68898876555555544433367788877754
No 174
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.00 E-value=0.0019 Score=79.98 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=44.8
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.|.-.|..+....+++.+++|+||+- ..+|...-..+.+.+....+ +..+|+.++-+.
T Consensus 555 LSGGQkQRiaiARAl~~~~~IliLDE~t-SaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls 614 (1321)
T 4f4c_A 555 LSGGQKQRIAIARALVRNPKILLLDEAT-SALDAESEGIVQQALDKAAK-GRTTIIIAHRLS 614 (1321)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTT
T ss_pred CCHHHHHHHHHHHHHccCCCEEEEeccc-ccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHH
Confidence 5788888888888889999999999998 67887754444444444444 778888887654
No 175
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.00 E-value=0.00073 Score=75.56 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=46.7
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
+.-.+.|+..+..+......+.+++|+||.- ..+|......+++.+..... +..+|+.|.-++
T Consensus 136 ~~~LSgGe~Qrv~iA~aL~~~p~illlDEPt-s~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~ 198 (538)
T 3ozx_A 136 ANILSGGGLQRLLVAASLLREADVYIFDQPS-SYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI 198 (538)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEESTT-TTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH
Confidence 3346788888887777778889999999998 68888876666555555544 677888877653
No 176
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.99 E-value=0.00085 Score=61.10 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=25.1
Q ss_pred hHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHH
Q 005291 7 LQYEETIVETVEQNPVVVVIGETGSGKSTQLSQI 40 (704)
Q Consensus 7 ~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~ 40 (704)
...++.+......+..+++.||+|+|||+++..+
T Consensus 14 ~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 14 QEMNREVEAAAKRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp HHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGG
T ss_pred HHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHH
Confidence 3445555555567788999999999999877544
No 177
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.99 E-value=0.0066 Score=58.62 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=24.9
Q ss_pred HHHHHHHHhccC--CEEEEEcCCCCcHHHHHHHHHHh
Q 005291 9 YEETIVETVEQN--PVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 9 ~~~~il~~l~~~--~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
..+.+...+..+ ..+++.||+|+|||+++..+...
T Consensus 25 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 25 VIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344555555544 35999999999999988766654
No 178
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.97 E-value=0.0019 Score=68.73 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=21.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+..++|.||+|+|||+++..+....
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999988777654
No 179
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.95 E-value=0.0044 Score=64.58 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+..++|.||+|+||||++..+....
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4689999999999999988777654
No 180
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.95 E-value=0.0027 Score=62.54 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=21.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+..++|.||+|+|||+++..+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999987776544
No 181
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.93 E-value=0.0032 Score=66.30 Aligned_cols=43 Identities=16% Similarity=0.444 Sum_probs=28.8
Q ss_pred CCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 115 LSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 115 l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
..++.++|+||+|. ++.+....+++.+... +.+..+|+.|..+
T Consensus 132 ~~~~~vlilDE~~~--L~~~~~~~L~~~le~~-~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS--LTKDAQAALRRTMEKY-SKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS--SCHHHHHHHHHHHHHS-TTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc--cCHHHHHHHHHHHHhh-cCCCEEEEEeCCH
Confidence 45788999999993 7877766665555443 3366777777654
No 182
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.92 E-value=0.01 Score=63.11 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=53.3
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHh-cCCCCCcEEEEcchhhHHHHHHHHHHHHH
Q 005291 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHR-HGYTKSGIIGVTQPRRVAAVSVARRVAQE 72 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~-~~~~~~~~ilv~~P~r~la~~~a~rva~~ 72 (704)
+.+.++|..++..+...+.+++..+-+.|||+++..++.. .....+..|+++.|++..|..+..++...
T Consensus 162 ~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp CCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4578999999998866788999999999999765554443 23344668999999999988887766543
No 183
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.92 E-value=0.0018 Score=67.73 Aligned_cols=128 Identities=16% Similarity=0.299 Sum_probs=68.1
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcch-hhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP-RRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P-~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~ 96 (704)
..+.++.++||+||||||++..+........+...+...+ .+..+.+....+++..+..+ +. .... .
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~---v~-----q~~~-~--- 194 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKV---IK-----HSYG-A--- 194 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEE---EC-----CCTT-C---
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceE---Ee-----cccc-C---
Confidence 3577999999999999999988877665554444444444 34455555555555555321 10 0000 0
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCCh
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~ 162 (704)
.+..............+++++++|.+-....+...... +..+.+...++..++++.++...
T Consensus 195 ----~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~e-L~~i~ral~~de~llvLDa~t~~ 255 (328)
T 3e70_C 195 ----DPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDE-MKKIARVTKPNLVIFVGDALAGN 255 (328)
T ss_dssp ----CHHHHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHH-HHHHHHHHCCSEEEEEEEGGGTT
T ss_pred ----CHHHHHHHHHHHHHhccchhhHHhhccchhHHHHHHHH-HHHHHHHhcCCCCEEEEecHHHH
Confidence 01111110000001135678999998732233333333 33333333347778888887643
No 184
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.88 E-value=0.00019 Score=89.04 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=44.4
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.|.-.+..+....+++.+++|+||+- ..+|...-..+.+.+.+..+ +..+|+.++-+.
T Consensus 1218 LSgGQrQriaiARAllr~~~ILiLDEaT-SaLD~~tE~~Iq~~l~~~~~-~~TvI~IAHRLs 1277 (1321)
T 4f4c_A 1218 LSGGQKQRIAIARALVRNPKILLLDEAT-SALDTESEKVVQEALDRARE-GRTCIVIAHRLN 1277 (1321)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESCC-CSTTSHHHHHHHHHHTTTSS-SSEEEEECSSSS
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEeCcc-ccCCHHHHHHHHHHHHHHcC-CCEEEEeccCHH
Confidence 4677777777777778889999999998 68887765554455544454 788888887654
No 185
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.87 E-value=0.0013 Score=65.14 Aligned_cols=34 Identities=15% Similarity=0.306 Sum_probs=27.7
Q ss_pred HHHH-HHhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 11 ETIV-ETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 11 ~~il-~~l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
++++ -.+..|++++|.||+|+||||++.+++...
T Consensus 14 D~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 14 DKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp HHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3344 356789999999999999999999888853
No 186
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.86 E-value=0.011 Score=67.17 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=54.8
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHH-hcCCCCCcEEEEcchhhHHHHHHHHHHHHHhC
Q 005291 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILH-RHGYTKSGIIGVTQPRRVAAVSVARRVAQELG 74 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~-~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~ 74 (704)
+.+..+|..++..+...+..++.++-|+|||+++..++. .....++..++++.|++..|..+...+.....
T Consensus 162 ~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp CCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 457899999999886678899999999999976654433 22233455899999999999988877765554
No 187
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.86 E-value=0.0011 Score=71.50 Aligned_cols=107 Identities=21% Similarity=0.182 Sum_probs=68.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccceE
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I~ 98 (704)
..++.+|.|+.||||||.+...+.. ..++++.|++.++.++.+++... +. ...+...
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~------~~~lVlTpT~~aa~~l~~kl~~~-~~----------------~~~~~~~ 216 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF------EEDLILVPGRQAAEMIRRRANAS-GI----------------IVATKDN 216 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT------TTCEEEESCHHHHHHHHHHHTTT-SC----------------CCCCTTT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc------CCeEEEeCCHHHHHHHHHHhhhc-Cc----------------cccccce
Confidence 4468899999999999988766531 35688999999998888777321 10 0112344
Q ss_pred EcchHHHHHHHHhCCC--CCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEec
Q 005291 99 YLTDGVLLREILSNPD--LSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~--l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SA 158 (704)
+.|-+.++ ++... ...+++|||||+- +++...+..++.. .+ ..++|++.=
T Consensus 217 V~T~dsfL---~~~~~~~~~~~d~liiDE~s--m~~~~~l~~l~~~----~~-~~~vilvGD 268 (446)
T 3vkw_A 217 VRTVDSFL---MNYGKGARCQFKRLFIDEGL--MLHTGCVNFLVEM----SL-CDIAYVYGD 268 (446)
T ss_dssp EEEHHHHH---HTTTSSCCCCCSEEEEETGG--GSCHHHHHHHHHH----TT-CSEEEEEEC
T ss_pred EEEeHHhh---cCCCCCCCCcCCEEEEeCcc--cCCHHHHHHHHHh----CC-CCEEEEecC
Confidence 56655433 22222 2248999999997 6777766654432 22 356666653
No 188
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.85 E-value=0.0037 Score=64.36 Aligned_cols=125 Identities=18% Similarity=0.207 Sum_probs=65.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE--cchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV--TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv--~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~ 96 (704)
.++++.++|++|+||||++..+....... +++|++ .-+.+..+..+...+.+..+..+ +. ....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~---~~----~~~~------ 162 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQRPAAREQLRLLGEKVGVPV---LE----VMDG------ 162 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEECCSSCHHHHHHHHHHHHHHTCCE---EE----CCTT------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcccHhHHHHHHHhcccCCeEE---EE----cCCC------
Confidence 35688899999999999887776655443 344433 34555555443334444444331 10 0000
Q ss_pred eEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
..|..+++..+......++++|||||+--...+...+..+.+......+ +..++++.|+..
T Consensus 163 ---~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~-~~~~lv~~~~~~ 223 (295)
T 1ls1_A 163 ---ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGP-DEVLLVLDAMTG 223 (295)
T ss_dssp ---CCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCC-SEEEEEEEGGGT
T ss_pred ---CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCC-CEEEEEEeCCCc
Confidence 1233333333222112568999999994245555444443332222233 555666777643
No 189
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.80 E-value=0.0012 Score=68.43 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
++.+++.||||+|||+++..+.....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999988876665543
No 190
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.78 E-value=0.0019 Score=70.92 Aligned_cols=45 Identities=9% Similarity=0.211 Sum_probs=33.5
Q ss_pred HHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc
Q 005291 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (704)
Q Consensus 11 ~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~ 55 (704)
++++-.+..|+.++|.|++|+||||++.+++.......+..+++.
T Consensus 194 D~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~ 238 (454)
T 2r6a_A 194 DRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIF 238 (454)
T ss_dssp HHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred HhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 445556788999999999999999999988876654334345443
No 191
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.77 E-value=0.0013 Score=70.04 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+..++|.||+|+||||++..+....
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998777654
No 192
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.75 E-value=0.00093 Score=70.63 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=25.6
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+..|.++.|.||+||||||++.+++...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999999988875
No 193
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.74 E-value=0.00034 Score=86.54 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=42.1
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.+.|.-.|..+....+.+.+++|+||+- ..+|...-..+.+.+..... +..+|+.|+-+
T Consensus 527 LSgGq~QriaiARal~~~p~iliLDEpt-s~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l 585 (1284)
T 3g5u_A 527 LSGGQKQRIAIARALVRNPKILLLDEAT-SALDTESEAVVQAALDKARE-GRTTIVIAHRL 585 (1284)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTT-CSSCHHHHHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCC-CCCCHHHHHHHHHHHHHHcC-CCEEEEEecCH
Confidence 5778777777777777888999999998 68888765444444433443 67788877654
No 194
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.72 E-value=0.011 Score=59.42 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=25.8
Q ss_pred HHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 11 ~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
+.+......+..++|.||+|+|||+++..+.....
T Consensus 20 ~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 20 EQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp HHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred HHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 33444455678899999999999988876665543
No 195
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.72 E-value=0.0021 Score=73.57 Aligned_cols=66 Identities=23% Similarity=0.356 Sum_probs=53.5
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHH
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ 71 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~ 71 (704)
+...|.+++..+..++.++|.||+|+|||+.+..++.......+.+|+++.|+..++.++.+++.+
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 467788888887788899999999999997776665544332467899999999999999998854
No 196
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.71 E-value=0.0018 Score=62.90 Aligned_cols=42 Identities=24% Similarity=0.219 Sum_probs=31.6
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhH
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV 60 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~ 60 (704)
..|...+++|+-||||||.+...+..... .+.++++++|...
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~-~g~kVli~k~~~d 67 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQF-AKQHAIVFKPCID 67 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEECC--
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEEEeccC
Confidence 35678889999999999988888776543 3568888888653
No 197
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.69 E-value=0.002 Score=74.03 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=49.8
Q ss_pred chHHHHHHHHHh-ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHH
Q 005291 6 ILQYEETIVETV-EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ 71 (704)
Q Consensus 6 i~~~~~~il~~l-~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~ 71 (704)
+.+.|.+++..+ ......+|.||+|||||+.+..++..... .+.+|+++.|+-.++.++.+++..
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~-~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK-QGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEcCchHHHHHHHHHHHh
Confidence 456677776665 45679999999999999665555544332 466899999999999999999854
No 198
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.68 E-value=0.009 Score=65.30 Aligned_cols=128 Identities=17% Similarity=0.174 Sum_probs=64.1
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE-cc-hhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCccc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQ-PRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv-~~-P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~ 95 (704)
..|.++.|+|++||||||++..+....... ++.|.+ .. +.+..+......++...++ +|-. .... ...
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~g~D~~r~aa~eQL~~~~~r~~I------~vV~--Q~~~-~~p 360 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLAAGDTFRAAAVEQLQVWGQRNNI------PVIA--QHTG-ADS 360 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEECCCTTCHHHHHHHHHHHHHHTC------CEEC--CSTT-CCH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEecCcccchhhHHHHHHHHHhcCc------eEEe--cccC-cCH
Confidence 356799999999999999998887765544 444444 23 3454433333333222322 2211 1000 000
Q ss_pred ceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh----c--cCcEEEEEecCCChH
Q 005291 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR----A--SKLKILITSATLDGE 163 (704)
Q Consensus 96 ~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~----~--~~~kiI~~SATl~~~ 163 (704)
..|-.-.+.... ..++++||||-+- |.-....+..-++.+.... + +.-.++.++||...+
T Consensus 361 ---~~tV~e~l~~a~----~~~~DvVLIDTaG-rl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~ 426 (503)
T 2yhs_A 361 ---ASVIFDAIQAAK----ARNIDVLIADTAG-RLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN 426 (503)
T ss_dssp ---HHHHHHHHHHHH----HTTCSEEEECCCC-SCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH
T ss_pred ---HHHHHHHHHHHH----hcCCCEEEEeCCC-ccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH
Confidence 011111111111 2467899999987 4433333333344433321 1 234577888887533
No 199
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.66 E-value=0.0073 Score=63.95 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=25.6
Q ss_pred HHHHHHhccCC---EEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 11 ETIVETVEQNP---VVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 11 ~~il~~l~~~~---~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
+.+...+..++ .+++.||+|+|||+++..+.....
T Consensus 26 ~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp HHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34445555554 589999999999999887766553
No 200
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.64 E-value=0.0021 Score=68.50 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
...++|.||+|+|||+++..+....
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999887776653
No 201
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.56 E-value=0.0097 Score=61.26 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHh
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
+..+++.||+|+|||+++..+...
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999888755544
No 202
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.52 E-value=0.015 Score=60.31 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=23.3
Q ss_pred HHHHHHhccC---CEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 11 ETIVETVEQN---PVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 11 ~~il~~l~~~---~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+.+...+..+ ..+++.||+|+|||+++..+....
T Consensus 36 ~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 36 ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp HHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3444455544 356777889999999887776554
No 203
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.52 E-value=0.0032 Score=72.60 Aligned_cols=62 Identities=21% Similarity=0.183 Sum_probs=42.6
Q ss_pred EcchHHHHHHHHhCCCCCCCc--eEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 99 YLTDGVLLREILSNPDLSPYS--VIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~--~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
-.+.|+..|..+......+.+ ++++||.- ..+|......+++.+......+..+|+.|.-++
T Consensus 202 ~LSGGe~QRv~iArAL~~~p~~~lLlLDEPt-sgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 202 TLSGGEAQRIRLATQIGSRLTGVLYVLDEPS-IGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED 265 (670)
T ss_dssp GSCHHHHHHHHHHHHHHTCCCSCEEEEECTT-TTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred cCCHHHHHHHHHHHHHhhCCCCCEEEEECCc-cCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 367777777776666667777 99999997 678876655555444444333677888777654
No 204
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.50 E-value=0.0035 Score=73.43 Aligned_cols=66 Identities=23% Similarity=0.356 Sum_probs=53.4
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHH
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ 71 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~ 71 (704)
+...|.+++..+..++.++|.||+|+|||+.+..++.......+.+|+++.|+..++.++.+++..
T Consensus 357 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 467788888888788999999999999997766665544333467899999999999999988854
No 205
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.50 E-value=0.0021 Score=79.49 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=45.3
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.|...|..+....+.+.+++|+||+- ..+|......+.+.+..... +..+|+.|+-++
T Consensus 1172 LSgGq~Qrv~iARal~~~p~iLiLDEpT-s~lD~~~~~~i~~~l~~~~~-~~tvi~isH~l~ 1231 (1284)
T 3g5u_A 1172 LSGGQKQRIAIARALVRQPHILLLDEAT-SALDTESEKVVQEALDKARE-GRTCIVIAHRLS 1231 (1284)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSEEEESCS-SSCCHHHHHHHHHHHHHHSS-SSCEEEECSCTT
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHhCC-CCEEEEEecCHH
Confidence 5777777777766677788999999998 79999876665555544443 778888888765
No 206
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.48 E-value=0.032 Score=63.41 Aligned_cols=39 Identities=28% Similarity=0.281 Sum_probs=31.9
Q ss_pred HHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 005291 9 YEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYT 47 (704)
Q Consensus 9 ~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~ 47 (704)
..+.+...+..++.+++.||+|+||||++..+.......
T Consensus 49 ~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 49 AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 345666778899999999999999999998887766543
No 207
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.46 E-value=0.0078 Score=71.23 Aligned_cols=133 Identities=18% Similarity=0.206 Sum_probs=77.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcC--CC--CCcEEEEcc-hh-----hHHHHH-H----------HHHHHHHhCC
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHG--YT--KSGIIGVTQ-PR-----RVAAVS-V----------ARRVAQELGV 75 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~--~~--~~~~ilv~~-P~-----r~la~~-~----------a~rva~~~~~ 75 (704)
+..|+.+.|+||+||||||++..+..-.. .. ...++.++. .. ...+.+ + +..+.+.+|.
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL 537 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF 537 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCC
Confidence 56899999999999999999988874211 00 111233322 10 000111 0 1111111111
Q ss_pred ccCceeeeeeecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEE
Q 005291 76 RLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (704)
Q Consensus 76 ~vg~~vg~~~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~ 155 (704)
. +. ..+..+--.+.|+..|..+....+.+.+++|+||.- ..+|......++..+.. . +..+|+
T Consensus 538 ~-----------~~--~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPT-s~LD~~~~~~l~~~L~~--~-g~tvIi 600 (986)
T 2iw3_A 538 T-----------DE--MIAMPISALSGGWKMKLALARAVLRNADILLLDEPT-NHLDTVNVAWLVNYLNT--C-GITSIT 600 (986)
T ss_dssp C-----------HH--HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTT-TTCCHHHHHHHHHHHHH--S-CSEEEE
T ss_pred C-----------hh--hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCc-cCCCHHHHHHHHHHHHh--C-CCEEEE
Confidence 0 00 001223346888888888777778889999999998 78998877766655554 3 677888
Q ss_pred EecCCChHHHhcc
Q 005291 156 TSATLDGEKVSKF 168 (704)
Q Consensus 156 ~SATl~~~~~~~~ 168 (704)
.|+-+ +.+..+
T Consensus 601 vSHdl--~~l~~~ 611 (986)
T 2iw3_A 601 ISHDS--VFLDNV 611 (986)
T ss_dssp ECSCH--HHHHHH
T ss_pred EECCH--HHHHHh
Confidence 76653 334444
No 208
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.45 E-value=0.006 Score=64.02 Aligned_cols=34 Identities=18% Similarity=0.432 Sum_probs=26.6
Q ss_pred HHHHHHhccCCE--EEEEcCCCCcHHHHHHHHHHhc
Q 005291 11 ETIVETVEQNPV--VVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 11 ~~il~~l~~~~~--vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+.+...+..|+. +++.||+|+||||++..+....
T Consensus 35 ~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 35 TTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 445556677776 9999999999999998776654
No 209
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.45 E-value=0.01 Score=61.27 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=26.3
Q ss_pred HHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 9 YEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 9 ~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+.+......+..++|.||||+|||+++..+....
T Consensus 14 ~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 14 LLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp HHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 334444445567789999999999998887666544
No 210
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.0025 Score=74.79 Aligned_cols=66 Identities=23% Similarity=0.316 Sum_probs=52.7
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHH
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ 71 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~ 71 (704)
+...|.+++..+..++.++|.||+|||||+.+..++.......+.+|+++.|+..++.++.+++.+
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 457888899988888999999999999997665554432211356899999999999999999865
No 211
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.40 E-value=0.016 Score=60.42 Aligned_cols=36 Identities=25% Similarity=0.454 Sum_probs=28.7
Q ss_pred HHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 9 YEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 9 ~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+++...+..++.++|.||.|+|||+++..++...
T Consensus 20 el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 20 ESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 344555666667999999999999999998887664
No 212
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.39 E-value=0.005 Score=60.32 Aligned_cols=40 Identities=25% Similarity=0.251 Sum_probs=31.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhh
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR 59 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r 59 (704)
.|...++.|+-||||||.+...+.... ..+.++++++|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~-~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ-IAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH-TTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH-HCCCeEEEEeecC
Confidence 578999999999999988887777654 3466888888864
No 213
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.38 E-value=0.012 Score=60.91 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=24.8
Q ss_pred HHHHHHHhccCC--EEEEEcCCCCcHHHHHHHHHHh
Q 005291 10 EETIVETVEQNP--VVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 10 ~~~il~~l~~~~--~vii~gpTGsGKTt~l~~~l~~ 43 (704)
.+.+...+..++ .+++.||+|+|||+++..+...
T Consensus 34 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 34 VKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp HHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 344455555554 6999999999999988776654
No 214
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.37 E-value=0.01 Score=61.80 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
...+++.||+|+|||+++..+....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4579999999999999988776654
No 215
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.37 E-value=0.0035 Score=65.92 Aligned_cols=34 Identities=18% Similarity=0.434 Sum_probs=26.3
Q ss_pred HHHHHHHhccC--CEEEEEcCCCCcHHHHHHHHHHh
Q 005291 10 EETIVETVEQN--PVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 10 ~~~il~~l~~~--~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
.+.+...+..+ ..+++.||+|+||||++..+...
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34566667666 56999999999999988776654
No 216
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.35 E-value=0.025 Score=61.65 Aligned_cols=25 Identities=24% Similarity=0.285 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+.+++.||+|+||||++..+....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999887776544
No 217
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.32 E-value=0.0062 Score=68.97 Aligned_cols=112 Identities=21% Similarity=0.332 Sum_probs=75.9
Q ss_pred hHHHHHHHHHhcc--CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCCccCceeeee
Q 005291 7 LQYEETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (704)
Q Consensus 7 ~~~~~~il~~l~~--~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~~vg~~vg~~ 84 (704)
..-|.++++.+.. ..+.+|+|+-|.|||+.+-.++.... ..++|+.|+...+..+.+...+
T Consensus 177 T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~----~~~~vtAP~~~a~~~l~~~~~~------------- 239 (671)
T 2zpa_A 177 QPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA----GRAIVTAPAKASTDVLAQFAGE------------- 239 (671)
T ss_dssp CHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS----SCEEEECSSCCSCHHHHHHHGG-------------
T ss_pred CHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH----hCcEEECCCHHHHHHHHHHhhC-------------
Confidence 3457777777765 56789999999999988877777653 2469999998877655443211
Q ss_pred eecccccCcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCCh
Q 005291 85 IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (704)
Q Consensus 85 ~~~~~~~~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~ 162 (704)
.+-|..|..+.. ...+.++||||||= ++....+.. ++. ....|+||.|++.
T Consensus 240 -----------~i~~~~Pd~~~~------~~~~~dlliVDEAA--aIp~pll~~----ll~----~~~~v~~~tTv~G 290 (671)
T 2zpa_A 240 -----------KFRFIAPDALLA------SDEQADWLVVDEAA--AIPAPLLHQ----LVS----RFPRTLLTTTVQG 290 (671)
T ss_dssp -----------GCCBCCHHHHHH------SCCCCSEEEEETGG--GSCHHHHHH----HHT----TSSEEEEEEEBSS
T ss_pred -----------CeEEeCchhhhh------CcccCCEEEEEchh--cCCHHHHHH----HHh----hCCeEEEEecCCc
Confidence 155666655431 24468999999995 676655544 332 3345788888853
No 218
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.29 E-value=0.0081 Score=65.60 Aligned_cols=65 Identities=12% Similarity=0.238 Sum_probs=41.8
Q ss_pred HHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHH-HHHhCCc
Q 005291 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV-AQELGVR 76 (704)
Q Consensus 11 ~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rv-a~~~~~~ 76 (704)
++++--+..|+.++|.|++|+|||+++.+++.......+..+++... .....++..|+ +...+..
T Consensus 191 D~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl-E~~~~~l~~R~~~~~~~i~ 256 (444)
T 2q6t_A 191 DQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL-EMPAAQLTLRMMCSEARID 256 (444)
T ss_dssp HHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES-SSCHHHHHHHHHHHHTTCC
T ss_pred hhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC-CCCHHHHHHHHHHHHcCCC
Confidence 44555577899999999999999999988887665433444555332 12234555554 3444443
No 219
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.26 E-value=0.0044 Score=59.16 Aligned_cols=39 Identities=26% Similarity=0.242 Sum_probs=30.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchh
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR 58 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~ 58 (704)
.++..++.||.||||||.+.+.+...... +.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~-~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEccc
Confidence 47899999999999998888777765433 4577777775
No 220
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.24 E-value=0.0038 Score=67.01 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=24.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
-+..|.++.|.||+||||||++.+++...
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 35578999999999999999998776543
No 221
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.21 E-value=0.01 Score=61.14 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCC
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRHGY 46 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~~~ 46 (704)
..+++.||+|+|||+++..+......
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 47999999999999988877665543
No 222
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.21 E-value=0.01 Score=66.16 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+.+++.||+|+|||+++..+....
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999999998777665
No 223
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.20 E-value=0.012 Score=61.42 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+.+++.||+|+|||+++..+....
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 3679999999999999988777654
No 224
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.20 E-value=0.016 Score=59.41 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=21.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+..+++.||+|+|||+++..+....
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 36789999999999999988776654
No 225
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.20 E-value=0.014 Score=62.56 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
...++|.||+|+|||+++..+....
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh
Confidence 5789999999999999888776553
No 226
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.18 E-value=0.016 Score=61.29 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
...+++.||+|+|||+++..+....
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3568999999999999988777665
No 227
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.14 E-value=0.01 Score=60.36 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=22.3
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.....+++.||+|+|||+++..+....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456789999999999999988776553
No 228
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.10 E-value=0.0028 Score=61.68 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=34.3
Q ss_pred CchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 005291 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYT 47 (704)
Q Consensus 5 Pi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~ 47 (704)
|-..-+..+++.+..|+++.|+||+||||||++..+... ...
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~ 48 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ 48 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH-HHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC-CCc
Confidence 333445678899999999999999999999999988876 443
No 229
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.10 E-value=0.023 Score=58.79 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
...++|.||+|+|||+++..+....
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999887776543
No 230
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.10 E-value=0.004 Score=69.62 Aligned_cols=132 Identities=14% Similarity=0.109 Sum_probs=72.0
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE--cchhhHHHHHHHHHHHHHhCCccCc--eeeeeeeccccc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV--TQPRRVAAVSVARRVAQELGVRLGE--EVGYAIRFEDRT 91 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv--~~P~r~la~~~a~rva~~~~~~vg~--~vg~~~~~~~~~ 91 (704)
.+..|.+++|.||+||||||++.+++...... +.++++ .+.... ++..+. ..++..+.. ..|. .....
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~~---~l~~~~-~~~g~~~~~~~~~g~-~~~~~-- 348 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESRA---QLLRNA-YSWGMDFEEMERQNL-LKIVC-- 348 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCHH---HHHHHH-HTTSCCHHHHHHTTS-EEECC--
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCHH---HHHHHH-HHcCCCHHHHHhCCC-EEEEE--
Confidence 56789999999999999999999988766543 443333 232221 332222 112221100 0000 00000
Q ss_pred CcccceEEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHH-----HHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 92 SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTD-----ILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 92 ~~~~~I~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d-----~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
....-.+.|...+.+.......++++||+| .- ..++.. ....+...+......+..+|+.|...
T Consensus 349 ---~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~-~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 349 ---AYPESAGLEDHLQIIKSEINDFKPARIAID-SL-SALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp ---CCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CH-HHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred ---eccccCCHHHHHHHHHHHHHhhCCCEEEEc-Ch-HHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 011124677777777666566789999999 64 344443 33332222222223367888888765
No 231
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.07 E-value=0.025 Score=58.98 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..++|.||+|+|||+++..+....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 578999999999999887775543
No 232
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.03 E-value=0.0027 Score=64.18 Aligned_cols=41 Identities=32% Similarity=0.486 Sum_probs=30.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCC-CCcEEEEcch
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYT-KSGIIGVTQP 57 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~-~~~~ilv~~P 57 (704)
+..|+.++|+|||||||||++..++...... .+..++.-.|
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 7889999999999999999998887765543 3333343344
No 233
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.02 E-value=0.023 Score=58.37 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=66.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE--cchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccce
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV--TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv--~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I 97 (704)
+.+++++|++|+||||++..+....... ++++++ .-+.|..+..+.+.+++..+..+-. + . ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~-g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~--~-----~--~~----- 162 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK-GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYG--E-----P--GE----- 162 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT-TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEEC--C-----T--TC-----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEe--c-----C--CC-----
Confidence 4588899999999999887776655433 333333 4456666665555555555543211 0 0 00
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCC--CHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSL--NTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l--~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
..+..++..........++++||||=+- +.- ..+.+..-++.+......+.-++++.|+.
T Consensus 163 --~~p~~~~~~~l~~~~~~~~D~ViIDTpg-~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 163 --KDVVGIAKRGVEKFLSEKMEIIIVDTAG-RHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEECCC-SCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEeCCC-CcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 1233332222211111468999999987 333 33344433444433333366677777763
No 234
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.97 E-value=0.0061 Score=59.01 Aligned_cols=41 Identities=27% Similarity=0.267 Sum_probs=29.7
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhh
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR 59 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r 59 (704)
..|.+.+++||-||||||.+...+..... .+.++++++|..
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~-~g~kvli~kp~~ 66 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIY-AKQKVVVFKPAI 66 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH-cCCceEEEEecc
Confidence 46789999999999999966666554432 356788888854
No 235
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.94 E-value=0.019 Score=68.07 Aligned_cols=46 Identities=22% Similarity=0.148 Sum_probs=29.8
Q ss_pred CCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhc--cCcEEEEEecCCC
Q 005291 115 LSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA--SKLKILITSATLD 161 (704)
Q Consensus 115 l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~--~~~kiI~~SATl~ 161 (704)
+.+.++||+||+- +++|+.....+...++.... .+..+|+.|+-.+
T Consensus 739 a~~~sLlLLDEp~-~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e 786 (934)
T 3thx_A 739 ATKDSLIIIDELG-RGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE 786 (934)
T ss_dssp CCTTCEEEEESCS-CSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG
T ss_pred ccCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH
Confidence 4677999999998 89998655554344433221 2567777666533
No 236
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.87 E-value=0.048 Score=64.47 Aligned_cols=51 Identities=18% Similarity=0.105 Sum_probs=33.5
Q ss_pred CCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHh--ccCcEEEEEecCCChHHHh
Q 005291 115 LSPYSVIILDEAHERSLNTDILLGLVKRLVNLR--ASKLKILITSATLDGEKVS 166 (704)
Q Consensus 115 l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~--~~~~kiI~~SATl~~~~~~ 166 (704)
..+.++|++||+- +++|+.....+...++... ..+..+|+.|+-++-..+.
T Consensus 750 a~~p~LlLLDEP~-~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~ 802 (918)
T 3thx_B 750 ATSQSLVILDELG-RGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELE 802 (918)
T ss_dssp CCTTCEEEEESTT-TTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHH
T ss_pred ccCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHH
Confidence 5678999999998 8999876655554444322 1267777776665433343
No 237
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.87 E-value=0.016 Score=59.80 Aligned_cols=50 Identities=12% Similarity=0.209 Sum_probs=31.3
Q ss_pred HHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEe
Q 005291 105 LLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (704)
Q Consensus 105 Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~S 157 (704)
+...+...|...+..++||||+| .+..+....+++.+ +..++...+|+.+
T Consensus 70 li~~~~~~p~~~~~kvviIdead--~lt~~a~naLLk~L-Eep~~~t~fIl~t 119 (305)
T 2gno_A 70 IKDFLNYSPELYTRKYVIVHDCE--RMTQQAANAFLKAL-EEPPEYAVIVLNT 119 (305)
T ss_dssp HHHHHTSCCSSSSSEEEEETTGG--GBCHHHHHHTHHHH-HSCCTTEEEEEEE
T ss_pred HHHHHhhccccCCceEEEeccHH--HhCHHHHHHHHHHH-hCCCCCeEEEEEE
Confidence 44455556667789999999999 35555555555544 4443355555554
No 238
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.81 E-value=0.052 Score=56.33 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=28.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE--cchhhHHH
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV--TQPRRVAA 62 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv--~~P~r~la 62 (704)
.++++.++|++|+||||.+..+....... +++|++ .-+.+..+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVllid~D~~r~~a 148 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIAAADTFRAGA 148 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCCSCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCcchhH
Confidence 45689999999999998887776655443 444443 23445444
No 239
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.80 E-value=0.01 Score=63.60 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=21.0
Q ss_pred cCCEEEE--EcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVV--IGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii--~gpTGsGKTt~l~~~l~~~ 44 (704)
.+..++| .||+|+|||+++..+....
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 3457888 8999999999988777654
No 240
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.79 E-value=0.0095 Score=60.27 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
...+++.||+|+|||+++..+....
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3579999999999999887776653
No 241
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.78 E-value=0.0071 Score=67.57 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=25.8
Q ss_pred HHHHH-HhccCCEEEEEcCCCCcHHHHHHHHH
Q 005291 11 ETIVE-TVEQNPVVVVIGETGSGKSTQLSQIL 41 (704)
Q Consensus 11 ~~il~-~l~~~~~vii~gpTGsGKTt~l~~~l 41 (704)
+++.- .+..|++++|+||+||||||++.+++
T Consensus 29 d~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 29 DDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp HHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 34444 67789999999999999999999853
No 242
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.69 E-value=0.04 Score=57.95 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=28.7
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv 54 (704)
-+..|.+++|.||+||||||++.+++...... ++.+++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vly 94 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGIAAF 94 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEE
Confidence 45678999999999999999988888765433 334443
No 243
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.65 E-value=0.048 Score=56.82 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=26.7
Q ss_pred HHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 9 YEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 9 ~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+.+.. +.. +.++|.||.|+|||+++..+....
T Consensus 21 el~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 21 EIEKLKG-LRA-PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhc
Confidence 3345555 555 799999999999999998887765
No 244
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.64 E-value=0.02 Score=58.97 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=24.3
Q ss_pred HHHHHHHhccCC--EEEEEcCCCCcHHHHHHHHHHh
Q 005291 10 EETIVETVEQNP--VVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 10 ~~~il~~l~~~~--~vii~gpTGsGKTt~l~~~l~~ 43 (704)
.+.+...+..++ .+++.||+|+|||+++..+...
T Consensus 30 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 30 IDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp HHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 344555555543 4899999999999988766654
No 245
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.60 E-value=0.012 Score=63.57 Aligned_cols=40 Identities=35% Similarity=0.522 Sum_probs=30.0
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcch
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P 57 (704)
..+..++|+|||||||||++..++.......+..+.+-.|
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 4678999999999999999998888766544444444344
No 246
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.57 E-value=0.047 Score=57.38 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=29.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~ 55 (704)
-+..|.++.|.||+||||||++.+++...... ++.++++
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~-gg~VlyI 95 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKM-GGVAAFI 95 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 45568899999999999999999888765433 3445444
No 247
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.56 E-value=0.012 Score=62.46 Aligned_cols=44 Identities=30% Similarity=0.521 Sum_probs=33.4
Q ss_pred HHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEc
Q 005291 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (704)
Q Consensus 11 ~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~ 55 (704)
+.+--.+..|++++|+|||||||||++..++...... .+.|.+-
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie 209 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIE 209 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEE
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEEC
Confidence 4444567899999999999999999999887765543 4455543
No 248
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.55 E-value=0.013 Score=69.44 Aligned_cols=63 Identities=24% Similarity=0.330 Sum_probs=42.9
Q ss_pred cchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCChHHHhcc
Q 005291 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~~~~~~~~ 168 (704)
.+.|+..|..+....+.+..++|+||.- ..+|.+....+++.+... +..+|+.|.- .+.+..+
T Consensus 902 LSGGQkQRVaLArAL~~~P~LLLLDEPT-~gLD~~s~~~L~~~L~~~---g~tVIiISHD--~e~v~~l 964 (986)
T 2iw3_A 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPT-NYLDRDSLGALSKALKEF---EGGVIIITHS--AEFTKNL 964 (986)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEECGG-GTCCHHHHHHHHHHHHSC---SSEEEEECSC--HHHHTTT
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEECCc-cCCCHHHHHHHHHHHHHh---CCEEEEEECC--HHHHHHh
Confidence 5666666666666678889999999998 789998877766655432 3456666654 4434443
No 249
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.52 E-value=0.015 Score=59.94 Aligned_cols=56 Identities=23% Similarity=0.364 Sum_probs=36.1
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchh-hHHHHHHHHHHHHHh
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-RVAAVSVARRVAQEL 73 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~-r~la~~~a~rva~~~ 73 (704)
..++++.++||+||||||++..+........+...+...++ +..+.+....++...
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~ 154 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERT 154 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhc
Confidence 35679999999999999999888776655444444444443 444444333443333
No 250
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.52 E-value=0.021 Score=60.37 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=21.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
....+++.||+|+|||+++..+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999999988776654
No 251
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.47 E-value=0.01 Score=61.24 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=24.5
Q ss_pred HHHHHHHhccCC--EEEEEcCCCCcHHHHHHHHHHhc
Q 005291 10 EETIVETVEQNP--VVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 10 ~~~il~~l~~~~--~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+.+...+..++ .+++.||+|+|||+++..+....
T Consensus 26 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 26 IQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp HHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 334444454443 58999999999998887666543
No 252
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.46 E-value=0.032 Score=60.81 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=24.0
Q ss_pred HHHHhccCC--EEEEEcCCCCcHHHHHHHHHHhc
Q 005291 13 IVETVEQNP--VVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 13 il~~l~~~~--~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+...+..++ .+++.||+|+||||++..+....
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 344555555 59999999999999988776654
No 253
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.45 E-value=0.013 Score=60.23 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=32.0
Q ss_pred HHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcc
Q 005291 12 TIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ 56 (704)
Q Consensus 12 ~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~ 56 (704)
.+--.+..|+.+.|+||+||||||++..++... .|.|+...
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~~v 158 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLSFA 158 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEECGG
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEEEEe
Confidence 344567799999999999999999999888765 45565433
No 254
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.44 E-value=0.067 Score=57.63 Aligned_cols=122 Identities=17% Similarity=0.239 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE--cchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccce
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV--TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv--~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I 97 (704)
+.+++++|++|+||||++..+....... +++|++ .-+.+..+..+...++...+..+ +. .. . .
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v---~~--~~-~-~------- 162 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQRPAAREQLRLLGEKVGVPV---LE--VM-D-G------- 162 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCSSCHHHHHHHHHHHHHHTCCE---EE--CC-T-T-------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEeeccccCchhHHHHHHhcccCCccE---Ee--cC-C-C-------
Confidence 4578899999999999887777665443 444433 34566666554444555555432 11 00 0 0
Q ss_pred EEcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecC
Q 005291 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (704)
Q Consensus 98 ~~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SAT 159 (704)
..+..+.+.........++++||||=+-....+...... +..+.....++..++++.|+
T Consensus 163 --~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~e-l~~i~~~~~pd~vlLVvDa~ 221 (425)
T 2ffh_A 163 --ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGE-LARLKEVLGPDEVLLVLDAM 221 (425)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHH-HHHHHHHHCCSEEEEEEEGG
T ss_pred --CCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHH-HHHhhhccCCceEEEEEecc
Confidence 122222222211111246899999987522334433333 33333322335556666665
No 255
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.43 E-value=0.039 Score=57.38 Aligned_cols=62 Identities=15% Similarity=0.127 Sum_probs=41.3
Q ss_pred eEEcchHHHHHHHHhCCC----CCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 97 IKYLTDGVLLREILSNPD----LSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 97 I~~~T~g~Ll~~l~~~~~----l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
+...+.|+..+..+.... +.+..++|+||+. ..+|......++..+..... +.++|+.|.-.
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~-~~LD~~~~~~l~~~l~~~~~-~~~vi~~tH~~ 282 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVD-SPLDDYNAERFKRLLKENSK-HTQFIVITHNK 282 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCC-SSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCC-CCCCHHHHHHHHHHHHHhcC-CCeEEEEECCH
Confidence 334677766555433321 3567899999998 78998876666665555443 67888887764
No 256
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.40 E-value=0.023 Score=56.72 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=21.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
....+++.||+|+|||+++..+....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999887776554
No 257
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.39 E-value=0.025 Score=58.12 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.0
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+..+++.||+|+|||+++..+....
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456789999999999999998777664
No 258
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.37 E-value=0.0099 Score=57.52 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=23.9
Q ss_pred HHhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 15 ~~l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+..|+++.|+||+||||||++..+....
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 478899999999999999999998887764
No 259
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.36 E-value=0.015 Score=64.57 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=31.1
Q ss_pred HHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE
Q 005291 12 TIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (704)
Q Consensus 12 ~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv 54 (704)
.+.-.+..|.+++|+|||||||||++..++...... .+.|.+
T Consensus 252 ~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~-~giiti 293 (511)
T 2oap_1 252 YLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD-AKVVSI 293 (511)
T ss_dssp HHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT-CCEEEE
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC-CCEEEE
Confidence 444567889999999999999999998877665432 334433
No 260
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.33 E-value=0.016 Score=67.35 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHh
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
|++++|+||+||||||++..+...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 789999999999999999887664
No 261
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.30 E-value=0.028 Score=58.75 Aligned_cols=58 Identities=12% Similarity=0.155 Sum_probs=40.1
Q ss_pred HHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHH
Q 005291 10 EETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV 69 (704)
Q Consensus 10 ~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rv 69 (704)
-++++.-+..|+.++|.|++|+||||++..++..... .+..|++... .....++..|+
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSl-Ems~~ql~~Rl 93 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSL-EMSAEQLALRA 93 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEES-SSCHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeC-CCCHHHHHHHH
Confidence 3455566888999999999999999999888776544 3456655432 22344555554
No 262
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.30 E-value=0.012 Score=54.56 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=25.1
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..|+++.+.||+||||||++..++...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 789999999999999999999888876
No 263
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.29 E-value=0.011 Score=56.75 Aligned_cols=28 Identities=11% Similarity=0.401 Sum_probs=23.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+..|++++|+||+||||||++..+....
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4578999999999999999998877653
No 264
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.23 E-value=0.02 Score=60.29 Aligned_cols=55 Identities=24% Similarity=0.369 Sum_probs=35.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchh-hHHHHHHHHHHHHHh
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-RVAAVSVARRVAQEL 73 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~-r~la~~~a~rva~~~ 73 (704)
.++++.++||+||||||++..+........+...+...++ |..+.+....++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~ 211 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERT 211 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhc
Confidence 5678999999999999999888776655444444555443 444443333343333
No 265
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.21 E-value=0.013 Score=55.31 Aligned_cols=27 Identities=19% Similarity=0.501 Sum_probs=23.3
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..|+.++|+||+||||||++..++...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 357899999999999999998877654
No 266
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.11 E-value=0.055 Score=62.29 Aligned_cols=62 Identities=26% Similarity=0.270 Sum_probs=42.2
Q ss_pred EcchHHHHHHHHhCCCCCC---CceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 99 YLTDGVLLREILSNPDLSP---YSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~---~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
-.+.|+..|..+....+.+ ..++++||+- ..+|......+++.+......+..+|+.|.-++
T Consensus 543 ~LSgG~~qrv~iAraL~~~p~~p~llllDEPt-~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~ 607 (670)
T 3ux8_A 543 TLSGGEAQRVKLAAELHRRSNGRTLYILDEPT-TGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD 607 (670)
T ss_dssp GCCHHHHHHHHHHHHHHSCCCSCEEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred hCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3577777776665554444 4699999998 789887766665555554443677777776553
No 267
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.11 E-value=0.021 Score=65.46 Aligned_cols=68 Identities=19% Similarity=0.210 Sum_probs=49.0
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc---CCCCCcEEEEcchhhHHHHHHHHHHHHHhCC
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH---GYTKSGIIGVTQPRRVAAVSVARRVAQELGV 75 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~---~~~~~~~ilv~~P~r~la~~~a~rva~~~~~ 75 (704)
+.+.|.+++.. .+..++|.|+.|||||+.+..-+... ......+|+++.+++.++.++.+++.+..+.
T Consensus 10 Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 10 LNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp CCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 55677788773 35667999999999996554332221 1123458999999999999999999887653
No 268
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.08 E-value=0.025 Score=59.69 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
++.+++.||+|+|||+++..+.....
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999888877654
No 269
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.06 E-value=0.01 Score=63.12 Aligned_cols=38 Identities=34% Similarity=0.380 Sum_probs=29.3
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv 54 (704)
+..++.++|+|||||||||++..++........+.|+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~ 170 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT 170 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEE
Confidence 67889999999999999999988887655432345533
No 270
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.05 E-value=0.011 Score=56.09 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=24.0
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHh
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
.+..|++++|+||+||||||++..+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 5778999999999999999999877654
No 271
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.04 E-value=0.012 Score=57.41 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=23.9
Q ss_pred HHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 13 il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+--.+..|+.++|+||+||||||++..++...
T Consensus 16 isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 16 PRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 33456789999999999999999999887765
No 272
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.94 E-value=0.021 Score=62.25 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=21.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+.+++.||+|+|||+++..+....
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999998777664
No 273
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.93 E-value=0.033 Score=61.04 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+.+++.||+|+|||+++..+....
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 568999999999999988776654
No 274
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.91 E-value=0.013 Score=56.23 Aligned_cols=27 Identities=37% Similarity=0.598 Sum_probs=21.4
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..|+.++|+||+||||||++..++...
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 357889999999999999998887654
No 275
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.81 E-value=0.38 Score=50.17 Aligned_cols=60 Identities=20% Similarity=0.234 Sum_probs=41.2
Q ss_pred EcchHHHH------HHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecC
Q 005291 99 YLTDGVLL------REILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (704)
Q Consensus 99 ~~T~g~Ll------~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SAT 159 (704)
-.+.|+.. +..+......+..++++||+- ..+|......++..+........++|+.|+-
T Consensus 248 ~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~-~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~ 313 (339)
T 3qkt_A 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPT-PYLDEERRRKLITIMERYLKKIPQVILVSHD 313 (339)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCC-TTCCHHHHHHHHHHHHHTGGGSSEEEEEESC
T ss_pred HCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEECh
Confidence 35677655 334444466788999999998 7899887777666665544435677777765
No 276
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.75 E-value=0.058 Score=64.68 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHH
Q 005291 20 NPVVVVIGETGSGKSTQLSQI 40 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~ 40 (704)
|++++|+||+||||||++.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 789999999999999999877
No 277
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.74 E-value=0.14 Score=53.96 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=28.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv 54 (704)
-+..+.+++|.||+|+||||++.+++...... ++.+++
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~-g~~vly 107 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKA-GGTCAF 107 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEE
Confidence 45678999999999999999988887765432 334444
No 278
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.72 E-value=0.11 Score=60.55 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+++.||||+|||+++..+....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999998877665543
No 279
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.68 E-value=0.021 Score=61.84 Aligned_cols=53 Identities=21% Similarity=0.286 Sum_probs=31.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE--cchhhHHHHHHHHHHHHHhC
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV--TQPRRVAAVSVARRVAQELG 74 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv--~~P~r~la~~~a~rva~~~~ 74 (704)
.+++++|++|+||||++..+....... +.++++ .-|.|..+.+..+.++...+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~-G~kVllv~~D~~r~~a~~qL~~~~~~~g 154 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR-GLKPALIAADTYRPAAYEQLKQLAEKIH 154 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH-HCCEEEECCSCCCTTGGGSSHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEeccccCchHHHHHHHhhhccC
Confidence 478999999999998887776654322 333433 33444444333333333333
No 280
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.67 E-value=0.022 Score=55.80 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=24.4
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
.+..|+.++|+||+||||||++..++....
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 356899999999999999999998877654
No 281
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.63 E-value=0.02 Score=54.87 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=23.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+..|..++|+||+||||||++..+....
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5678999999999999999998776654
No 282
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.61 E-value=0.021 Score=55.24 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.5
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..|..++|+||+||||||++..++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 468899999999999999998877654
No 283
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.57 E-value=0.16 Score=55.93 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=28.2
Q ss_pred HHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 9 YEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 9 ~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+.++..+..+..+++.||+|+|||+++..+....
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 344566677788999999999999998887665544
No 284
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.53 E-value=0.02 Score=54.29 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
+++++|+||+||||||++..++....
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46789999999999999988877653
No 285
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.53 E-value=0.055 Score=58.89 Aligned_cols=45 Identities=7% Similarity=0.156 Sum_probs=34.3
Q ss_pred HHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcc
Q 005291 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ 56 (704)
Q Consensus 11 ~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~ 56 (704)
++++.-+..|..++|.|++|+||||++.+++...... +..+++..
T Consensus 188 D~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fS 232 (444)
T 3bgw_A 188 DRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHS 232 (444)
T ss_dssp HHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEEC
T ss_pred HhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEE
Confidence 4445557789999999999999999999888876544 45566543
No 286
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.44 E-value=0.082 Score=54.07 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+++.||+|+|||+++..+....
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578889999999999888776655
No 287
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.40 E-value=0.052 Score=63.36 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.4
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHh
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
..|++++|+||+||||||++.++...
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 36789999999999999999887653
No 288
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.38 E-value=0.016 Score=56.16 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=27.4
Q ss_pred HHHHHHHHh----ccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 9 YEETIVETV----EQNPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 9 ~~~~il~~l----~~~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
.-+++.+.+ ..+..+.|+||+||||||++..+.....
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 334454554 3578999999999999999987766543
No 289
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.35 E-value=0.029 Score=53.77 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=23.4
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..++.++|+||+|+||||++..++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 368899999999999999998877654
No 290
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.31 E-value=0.034 Score=57.31 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=29.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcch
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P 57 (704)
.++++.++||+||||||++..+........+...+...+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D 139 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD 139 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 478999999999999999988887766554444444444
No 291
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.28 E-value=0.08 Score=58.32 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=22.0
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.....++|.||+|+|||+++..+....
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 445689999999999999888776554
No 292
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.19 E-value=0.11 Score=55.24 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=20.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+-+++.||+|||||.++..+..+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 34678999999999998887666554
No 293
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.17 E-value=0.034 Score=54.88 Aligned_cols=39 Identities=26% Similarity=0.228 Sum_probs=28.6
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv 54 (704)
-+..|++++|.||+|+||||++.+++.......++.+++
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~ 57 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYV 57 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 467899999999999999999887776544332333333
No 294
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.16 E-value=0.11 Score=57.46 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=41.6
Q ss_pred HHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHH-HHHhCC
Q 005291 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV-AQELGV 75 (704)
Q Consensus 11 ~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rv-a~~~~~ 75 (704)
++++.-+..|..++|.|++|+|||+++.+++.......+..++++.- .....++..|+ +...+.
T Consensus 233 D~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~-E~s~~~l~~r~~~~~~~~ 297 (503)
T 1q57_A 233 NDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML-EESVEETAEDLIGLHNRV 297 (503)
T ss_dssp HHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES-SSCHHHHHHHHHHHHTTS
T ss_pred hHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec-cCCHHHHHHHHHHHHcCC
Confidence 45555577899999999999999999999988766542444544322 12234555554 333443
No 295
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.14 E-value=0.066 Score=67.77 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=30.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcch
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P 57 (704)
+..+.++++.||+|+|||+++.+++.+... .+.+++++..
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~-~G~~v~Fi~~ 1463 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDA 1463 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEECT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEEc
Confidence 557899999999999999999888776654 3455555543
No 296
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.13 E-value=0.013 Score=57.63 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=19.9
Q ss_pred HHHHHHHhccCCEEEEEcCCCCcHHHHHHHHH-Hh
Q 005291 10 EETIVETVEQNPVVVVIGETGSGKSTQLSQIL-HR 43 (704)
Q Consensus 10 ~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l-~~ 43 (704)
|..+--.+..|++++|+||+||||||++..+. ..
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 33443456789999999999999999998777 54
No 297
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.12 E-value=0.16 Score=55.03 Aligned_cols=123 Identities=18% Similarity=0.230 Sum_probs=63.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE--cchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccceE
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV--TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv--~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I~ 98 (704)
.+++++|++|+||||.+..+........+.++++ .-|.+..+.+....++...+..+-. .+ . .
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~-~~------~---~----- 165 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP-SD------V---G----- 165 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECC-CC------S---S-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEe-CC------C---C-----
Confidence 4788899999999988777765554331344433 4566666665555455555543211 00 0 0
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl 160 (704)
.++..+++.........++++||||=+-....+.. +..-+..+.....++..++++.|+.
T Consensus 166 -~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~-l~~~L~~~~~~~~p~~vllVvda~~ 225 (433)
T 2xxa_A 166 -QKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEA-MMDEIKQVHASINPVETLFVVDAMT 225 (433)
T ss_dssp -SCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHH-HHHHHHHHHHHSCCSEEEEEEETTB
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEECCCcccccHH-HHHHHHHHHHhhcCcceeEEeecch
Confidence 12333322222111114689999999852223333 3333444433323255555566653
No 298
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.06 E-value=0.18 Score=55.46 Aligned_cols=123 Identities=15% Similarity=0.193 Sum_probs=63.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE--cchhhHHHHHHHHHHHHHhCCccCceeeeeeecccccCcccceE
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV--TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv--~~P~r~la~~~a~rva~~~~~~vg~~vg~~~~~~~~~~~~~~I~ 98 (704)
.+++++|++|+||||++..++...... +.++++ .-|.|..+.+..+......+..+ ++.. ...
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~-G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v---~~~~------~~~----- 166 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRK-GWKTCLICADTFRAGAFDQLKQNATKARIPF---YGSY------TEM----- 166 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEECCSSSHHHHHHHHHHHHHTCCE---EECC------CCS-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEeccccchhHHHHHHHHhhccCceE---EccC------CCC-----
Confidence 378899999999999888777654432 333433 33556666555554544444432 1100 000
Q ss_pred EcchHHHHHHHHhCCCCCCCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+..+.+.........+++++|||-+=....+.++... +..+.....++.-++++.|+..
T Consensus 167 --dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~e-l~~~~~~i~pd~vllVvDa~~g 226 (504)
T 2j37_W 167 --DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEE-MLQVANAIQPDNIVYVMDASIG 226 (504)
T ss_dssp --CHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHH-HHHHHHHHCCSEEEEEEETTCC
T ss_pred --CHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHH-HHHHHhhhcCceEEEEEecccc
Confidence 11111111111001146899999998633344444433 3333222233667778888753
No 299
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.85 E-value=0.092 Score=56.76 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=21.6
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
...+-+++.||+|+|||+++..+..+.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 345789999999999998887666554
No 300
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=93.82 E-value=0.3 Score=57.61 Aligned_cols=61 Identities=25% Similarity=0.245 Sum_probs=41.7
Q ss_pred cchHHHHHHHHhCCCCC---CCceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLS---PYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~---~~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.|...|..+...... +..++|+||+- ..+|......+++.+......+..+|+.|+-++
T Consensus 806 LSGGErQRV~LAraL~~~p~~p~LLILDEPT-sGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~ 869 (916)
T 3pih_A 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPT-VGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD 869 (916)
T ss_dssp CCHHHHHHHHHHHHHTSCCCSSEEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred CCHHHHHHHHHHHHHhhCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 46676666665544443 35799999998 789988766666665555444677888877654
No 301
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.82 E-value=0.043 Score=52.53 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=23.1
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+..+++++|+|++||||||+...+....
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45678899999999999999998877655
No 302
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.81 E-value=0.036 Score=57.37 Aligned_cols=30 Identities=20% Similarity=0.110 Sum_probs=25.4
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCC
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGY 46 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~ 46 (704)
+..|.++.|.||+||||||++..+......
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 567889999999999999999877766543
No 303
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.61 E-value=0.095 Score=49.95 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=27.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhh
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR 59 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r 59 (704)
...++|.+++|.||||.+.-+..... ..+.+|+++|-.+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~-g~G~rV~~vQF~K 66 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV-GHGKNVGVVQFIK 66 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH-HTTCCEEEEESSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEEeeC
Confidence 45678888999999988766655543 2366788876433
No 304
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.61 E-value=0.046 Score=52.38 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=22.8
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+.+++|+||+||||||++..+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999998776654
No 305
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=93.53 E-value=0.065 Score=66.07 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=50.8
Q ss_pred CCchHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHH-HHHhcCC----CCCcEEEEcchhhHHHHHHHHHHHHHhC
Q 005291 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQ-ILHRHGY----TKSGIIGVTQPRRVAAVSVARRVAQELG 74 (704)
Q Consensus 4 LPi~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~-~l~~~~~----~~~~~ilv~~P~r~la~~~a~rva~~~~ 74 (704)
....+-|.+++..- +++++|.|..|||||+.+.. ++..... .....|+++.+|+.++.++.+|+...++
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~ 82 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALE 82 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHH
Confidence 45677888888764 77899999999999966543 3332221 1345899999999999999999876543
No 306
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=93.31 E-value=0.063 Score=61.79 Aligned_cols=68 Identities=28% Similarity=0.307 Sum_probs=48.6
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHH-HHH--hcCCCCCcEEEEcchhhHHHHHHHHHHHHHhCC
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQ-ILH--RHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV 75 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~-~l~--~~~~~~~~~ilv~~P~r~la~~~a~rva~~~~~ 75 (704)
+.+.|.+++... +..++|.|+.|||||+.+.. +.. .........|+++..++.++.++.+|+...++.
T Consensus 3 L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 3 LNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp CCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 456788888753 66788999999999955543 222 111113457888899999999999999877653
No 307
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.30 E-value=0.048 Score=52.39 Aligned_cols=28 Identities=32% Similarity=0.590 Sum_probs=23.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+..+..++|+||+||||||++..+....
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578899999999999999998876654
No 308
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.30 E-value=0.044 Score=52.83 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=22.5
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+.++.|+||+||||||++..+....
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999998777654
No 309
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.18 E-value=0.15 Score=55.12 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=21.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+-+++.||+|||||+++..+..+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34679999999999998887766654
No 310
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.15 E-value=0.12 Score=60.61 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=23.4
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+..++.++++||+||||||++..+....
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4567889999999999999998776654
No 311
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.14 E-value=0.057 Score=50.06 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=21.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+.+++|+||+||||||++..+....
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999998776654
No 312
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.13 E-value=0.18 Score=59.61 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=23.8
Q ss_pred HHHHHhcc--CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 12 TIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 12 ~il~~l~~--~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+++.+.. ..+++++||+|+|||+++..+....
T Consensus 181 ~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 181 RVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp HHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34444433 4578999999999999887776654
No 313
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.10 E-value=0.036 Score=54.73 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=24.8
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
-+..|..++|.|++|+|||+++.+++...
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998887653
No 314
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.10 E-value=0.11 Score=48.48 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=26.2
Q ss_pred HHHHHHHHhcc--CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 9 YEETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 9 ~~~~il~~l~~--~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+++.+.+.. ...++|.||+|+|||+++..+....
T Consensus 30 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 30 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp HHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34455555543 3689999999999999887766553
No 315
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.07 E-value=0.13 Score=53.03 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=24.0
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
..+.++.|+||+||||||++..+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999988777554
No 316
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.95 E-value=0.075 Score=50.83 Aligned_cols=30 Identities=30% Similarity=0.247 Sum_probs=24.9
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
....+.+++|+||+||||||++..+.....
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 446789999999999999999887766554
No 317
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.89 E-value=0.046 Score=52.09 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
|+.+.|+||+||||||++..++....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 56789999999999999988877654
No 318
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.87 E-value=0.084 Score=49.45 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
...+|+||+||||||++..+.....
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3889999999999999987766543
No 319
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.83 E-value=0.045 Score=51.73 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 005291 20 NPVVVVIGETGSGKSTQLSQILH 42 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~ 42 (704)
|.+++|+||+||||||++..+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 45789999999999999988765
No 320
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.82 E-value=0.15 Score=55.01 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+-+++.||+|||||+++..+..+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999998887776654
No 321
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.72 E-value=0.058 Score=53.53 Aligned_cols=29 Identities=31% Similarity=0.281 Sum_probs=23.4
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+..+.++.|.||+||||||++..+....
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46678899999999999999998776644
No 322
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.67 E-value=0.13 Score=49.31 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=21.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+.++.|+|++||||||++..+....
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999988776544
No 323
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.67 E-value=0.18 Score=54.06 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+-+++.||+|+|||.++..+..+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHh
Confidence 4679999999999998877666554
No 324
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.67 E-value=0.12 Score=54.20 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=28.1
Q ss_pred HHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 005291 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRHGYT 47 (704)
Q Consensus 15 ~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~ 47 (704)
-.+..|+.+.|.||+|+||||++..++......
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 456789999999999999999998888876543
No 325
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.66 E-value=0.19 Score=51.98 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 22 VVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
++.|.||+||||||++..+.....
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 899999999999999877765543
No 326
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.64 E-value=0.081 Score=55.29 Aligned_cols=34 Identities=21% Similarity=0.153 Sum_probs=26.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG 50 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~ 50 (704)
+..+.++.|+||+||||||++..++.......+.
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~ 85 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHK 85 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCE
Confidence 4578899999999999999999887665443333
No 327
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.64 E-value=0.066 Score=49.82 Aligned_cols=26 Identities=35% Similarity=0.603 Sum_probs=21.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+.+++|+|++||||||++..+....
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 46789999999999999998776543
No 328
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.61 E-value=0.07 Score=51.98 Aligned_cols=29 Identities=31% Similarity=0.621 Sum_probs=24.1
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+.+.++++|.||+||||+|+...+....
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45567789999999999999998877665
No 329
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.50 E-value=0.16 Score=49.81 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=25.0
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCC
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGY 46 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~ 46 (704)
...|..+++.|+.||||||++..+......
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 346789999999999999999888776654
No 330
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=92.42 E-value=0.25 Score=57.72 Aligned_cols=62 Identities=21% Similarity=0.221 Sum_probs=44.6
Q ss_pred EcchHHHHHHHHhCCCCCC---CceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 99 YLTDGVLLREILSNPDLSP---YSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 99 ~~T~g~Ll~~l~~~~~l~~---~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
-.+.|...|..+....+.+ .+++|+||.- ..+|......+++.+......+..+|+.|+-++
T Consensus 730 ~LSGGekQRv~LAraL~~~p~~p~lLILDEPT-sGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~ 794 (842)
T 2vf7_A 730 ELSGGEAQRIKLATELRRSGRGGTVYVLDEPT-TGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ 794 (842)
T ss_dssp GCCHHHHHHHHHHHTTSSCCSSCEEEEEECTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 3566777777766666664 6999999998 789888777666666555444677888877654
No 331
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.38 E-value=0.065 Score=55.55 Aligned_cols=34 Identities=32% Similarity=0.460 Sum_probs=24.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcch
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P 57 (704)
++++|+|+.||||||++..++... .+.++.++.|
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~---~~~~~aVi~~ 38 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ---HGYKIAVIEN 38 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC---CCCCEEEECS
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc---CCCcEEEEEe
Confidence 578999999999999998887653 2334444444
No 332
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.36 E-value=0.12 Score=47.92 Aligned_cols=34 Identities=12% Similarity=0.360 Sum_probs=25.2
Q ss_pred HHHHHHhcc--CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 11 ETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 11 ~~il~~l~~--~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+.+.+.+.. ...++|.||+|+|||+++..+....
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 344444443 5689999999999999887776654
No 333
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.34 E-value=0.31 Score=57.61 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+++.||||+|||+++..+....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999998887666554
No 334
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.32 E-value=0.11 Score=55.72 Aligned_cols=27 Identities=37% Similarity=0.426 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCC
Q 005291 22 VVVVIGETGSGKSTQLSQILHRHGYTK 48 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~~~~~ 48 (704)
++.|+||+|+||||++..++.......
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~ 97 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEE 97 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTST
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccC
Confidence 999999999999999998887554433
No 335
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.29 E-value=0.28 Score=56.96 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+-+++.||+|+|||+++..+..+.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999988776654
No 336
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.26 E-value=0.23 Score=57.98 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+++.||||+|||+++..+....
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 68999999999998887666554
No 337
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.14 E-value=0.1 Score=48.91 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+++++|++||||||+...+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999998776654
No 338
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.11 E-value=0.23 Score=63.00 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=30.8
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv 54 (704)
.+..+.++++.||+|||||++..+++.+.... +.++++
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~-Ge~~~F 1114 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAF 1114 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEE
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEE
Confidence 57789999999999999999999998876544 444444
No 339
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=92.09 E-value=0.51 Score=51.88 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+-++|.||+|+|||+++..+....
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999998777654
No 340
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.06 E-value=0.11 Score=48.25 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+..++++|++||||||+...+....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999998776654
No 341
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.04 E-value=0.08 Score=51.97 Aligned_cols=37 Identities=35% Similarity=0.440 Sum_probs=27.2
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchh
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR 58 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~ 58 (704)
.+|.++.|.|++||||||++..+... .+...+.-.|.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 46789999999999999998766544 23355555563
No 342
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.03 E-value=0.076 Score=55.15 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=20.4
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHh
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
.+.+++|+|||||||||+...+...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999988766554
No 343
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.01 E-value=0.092 Score=52.02 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=22.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+..++|+||+||||||++..+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999998877543
No 344
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.98 E-value=0.067 Score=58.39 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=30.0
Q ss_pred HHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCC
Q 005291 12 TIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKS 49 (704)
Q Consensus 12 ~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~ 49 (704)
.+--.+..|+.+.|+||+||||||++..++.......+
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 34456779999999999999999999988776544333
No 345
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=91.95 E-value=0.18 Score=59.65 Aligned_cols=61 Identities=25% Similarity=0.275 Sum_probs=40.7
Q ss_pred cchHHHHHHHHhCCCCCC---CceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLSP---YSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~---~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.|...+..+....+.+ .+++|+||.- ..+|......+++.+......+..+|+.|.-++
T Consensus 864 LSGGekQRv~LAraL~~~p~~p~lLILDEPT-sGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~ 927 (993)
T 2ygr_A 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPT-TGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD 927 (993)
T ss_dssp SCHHHHHHHHHHHHHSSCCCSSEEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 445555555544434443 5899999998 789988777766666555444677888877654
No 346
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.93 E-value=0.085 Score=48.61 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=17.9
Q ss_pred CEEEEEcCCCCcHHHHHHHH
Q 005291 21 PVVVVIGETGSGKSTQLSQI 40 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~ 40 (704)
.+++|+|++||||||+...+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999877
No 347
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.92 E-value=0.11 Score=47.89 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 22 VVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
.++|+|+.||||||+...+.....
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999987766543
No 348
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.86 E-value=0.1 Score=49.49 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+.++|+||+|+||||++..++...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 457999999999999998776654
No 349
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.85 E-value=0.12 Score=50.56 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=21.6
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.....++|.|++||||||+...+....
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999998776654
No 350
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.85 E-value=0.1 Score=48.97 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+..++|.|++||||||+...+....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998776544
No 351
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.84 E-value=0.091 Score=53.06 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCC
Q 005291 22 VVVVIGETGSGKSTQLSQILHRHGYT 47 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~~~~ 47 (704)
++.|+||+|+||||++..++......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~ 29 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR 29 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 57899999999999999888766544
No 352
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.79 E-value=0.14 Score=50.81 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=22.4
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.....++|.||+||||||+...+....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 455689999999999999998876554
No 353
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.72 E-value=0.087 Score=49.45 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=21.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+..++++|++||||||+...+....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999998776544
No 354
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.70 E-value=0.15 Score=52.84 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=25.7
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
-+..|.+++|.||+|+|||+++.+++....
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 456789999999999999999998887653
No 355
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.60 E-value=0.11 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.++|+|||||||||+...+....
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999988776554
No 356
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.60 E-value=0.14 Score=48.35 Aligned_cols=28 Identities=32% Similarity=0.651 Sum_probs=23.5
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
...+..++|+|++||||||+...+....
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999998776554
No 357
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.60 E-value=0.093 Score=50.38 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=25.1
Q ss_pred HHHHhccCCEEEEEcCCCCcHHHHHHHHHHh
Q 005291 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 13 il~~l~~~~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
+++.+..+..+.|+|++||||||++..+...
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3455677889999999999999999876553
No 358
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.55 E-value=0.12 Score=49.07 Aligned_cols=30 Identities=30% Similarity=0.602 Sum_probs=24.4
Q ss_pred HHhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 15 ~~l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+..+..++|+|++||||||+...+....
T Consensus 7 ~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 7 EDLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345567899999999999999998776654
No 359
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.52 E-value=0.13 Score=48.37 Aligned_cols=28 Identities=32% Similarity=0.378 Sum_probs=23.0
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
..+.+++++|++||||||++..+.....
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3577899999999999999987766544
No 360
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.50 E-value=0.11 Score=53.44 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHh
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
+..++|+|||||||||+...+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 457899999999999998776654
No 361
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.46 E-value=0.15 Score=52.71 Aligned_cols=57 Identities=7% Similarity=0.150 Sum_probs=38.5
Q ss_pred HHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHHHHHHHHH
Q 005291 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV 69 (704)
Q Consensus 11 ~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la~~~a~rv 69 (704)
++++--+..|..++|.|++|+||||++.+++...... +..+++... .....++..|+
T Consensus 59 D~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g~~vl~~sl-E~s~~~l~~R~ 115 (315)
T 3bh0_A 59 DRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSL-EMGKKENIKRL 115 (315)
T ss_dssp HHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT-TCEEEEEES-SSCHHHHHHHH
T ss_pred HhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEEC-CCCHHHHHHHH
Confidence 4455567889999999999999999999888765433 345555432 13344455554
No 362
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.37 E-value=0.11 Score=48.87 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=21.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+..++++|++||||||+...+....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999998776554
No 363
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.37 E-value=0.14 Score=51.06 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.1
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+.++.|.||+||||||++..+....
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999998877554
No 364
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.36 E-value=0.19 Score=54.42 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=31.5
Q ss_pred HHhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcc
Q 005291 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ 56 (704)
Q Consensus 15 ~~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~ 56 (704)
-.+.+|+.+.|.||+||||||++..++.......+...++-+
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 557789999999999999999998888776544332333334
No 365
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=91.32 E-value=0.26 Score=57.18 Aligned_cols=67 Identities=22% Similarity=0.203 Sum_probs=47.2
Q ss_pred chHHHHHHHHHhccCCEEEEEcCCCCcHHHHHHH-HHHhc--CCCCCcEEEEcchhhHHHHHHHHHHHHHhC
Q 005291 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQ-ILHRH--GYTKSGIIGVTQPRRVAAVSVARRVAQELG 74 (704)
Q Consensus 6 i~~~~~~il~~l~~~~~vii~gpTGsGKTt~l~~-~l~~~--~~~~~~~ilv~~P~r~la~~~a~rva~~~~ 74 (704)
+.+.|.+++... +..++|.|+.|||||+.+.. +.... .......|+++..|+.+|.++.+|+...++
T Consensus 12 Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 12 LNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp SCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 456777887763 45678899999999955433 22221 112345788889999999999999987654
No 366
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.27 E-value=0.13 Score=48.11 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=22.3
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+.+++++|++||||||+...+....
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999998776554
No 367
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=91.26 E-value=0.2 Score=58.91 Aligned_cols=61 Identities=26% Similarity=0.285 Sum_probs=40.6
Q ss_pred cchHHHHHHHHhCCCCCC---CceEEEeCCCcCCCCHHHHHHHHHHHHHHhccCcEEEEEecCCC
Q 005291 100 LTDGVLLREILSNPDLSP---YSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (704)
Q Consensus 100 ~T~g~Ll~~l~~~~~l~~---~~~IIiDEaHer~l~~d~l~~llk~l~~~~~~~~kiI~~SATl~ 161 (704)
.+.|...+..+....+.+ .+++|+||.- ..+|......+++.+......+..+|+.|.-++
T Consensus 846 LSGGekQRv~LAraL~~~p~~p~lLILDEPT-sGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~ 909 (972)
T 2r6f_A 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPT-TGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD 909 (972)
T ss_dssp CCHHHHHHHHHHHHHSSCCCSCEEEEEECTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 345555555444434443 5899999998 789988777766666555444677888877654
No 368
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.25 E-value=0.19 Score=51.58 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=24.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYT 47 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~ 47 (704)
+..++.+.++||+|+||||++..++ .....
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~ 191 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR 191 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc
Confidence 3468899999999999999999887 55443
No 369
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.17 E-value=0.12 Score=46.94 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=19.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 005291 20 NPVVVVIGETGSGKSTQLSQILH 42 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~ 42 (704)
....+|+|||||||||++-.+..
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999998876654
No 370
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.14 E-value=0.13 Score=49.61 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 22 VVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
++++.||+||||+|+...+.....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999988876653
No 371
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.09 E-value=0.25 Score=47.17 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCC
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHGY 46 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~~ 46 (704)
.+..++|.|+.||||||++..+......
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4568999999999999999887765543
No 372
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.05 E-value=0.14 Score=49.64 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+..+.|+||+||||||++..+....
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999998776654
No 373
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.05 E-value=0.13 Score=47.89 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 005291 21 PVVVVIGETGSGKSTQLSQILH 42 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~ 42 (704)
..+++.|++||||||+...+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999987765
No 374
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=91.00 E-value=0.14 Score=53.37 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+.+++.||+|+||||++..+....
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 679999999999999998777654
No 375
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.99 E-value=0.15 Score=48.54 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+..++|+|+.||||||+...+....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999998776554
No 376
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.95 E-value=0.18 Score=51.35 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+..++++||+||||||++..+....
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999998877654
No 377
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.88 E-value=0.15 Score=50.74 Aligned_cols=31 Identities=29% Similarity=0.400 Sum_probs=25.2
Q ss_pred HHhcc---CCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 15 ETVEQ---NPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 15 ~~l~~---~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
-.+.. +++++|+|++||||||+...+.....
T Consensus 40 ~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 40 EEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp HTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred hhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34456 99999999999999999987776543
No 378
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=90.88 E-value=0.2 Score=52.37 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=25.1
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+..|.+++|.||+|||||+++.+++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999999888764
No 379
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.83 E-value=0.092 Score=49.10 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcCC
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRHGY 46 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~~~ 46 (704)
+.+.|+|++||||||++..++.....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57899999999999999887776543
No 380
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.80 E-value=0.12 Score=49.39 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=20.4
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHh
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
.+..++|+||||+||||++..++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3567899999999999988776543
No 381
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.71 E-value=0.13 Score=47.93 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=21.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.|.+++++|+.||||||++..+....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57789999999999999987765543
No 382
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.69 E-value=0.18 Score=53.69 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=31.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhH
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV 60 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~ 60 (704)
.+.+++|+|||||||||++..++..... .+..+++.-|...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~-~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM-QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH-CCCEEEEEeCCcC
Confidence 5778999999999999998877765543 4566777777654
No 383
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.64 E-value=0.15 Score=52.32 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHh
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
...++|+|||||||||+...+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 457899999999999998776654
No 384
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.55 E-value=0.17 Score=55.24 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=26.5
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG 50 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~ 50 (704)
+.. +++.|+||+||||||++..+........|.
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 59 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTL 59 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTT
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCE
Confidence 456 899999999999999999888776554443
No 385
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.54 E-value=0.18 Score=47.49 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=21.8
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHh
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
..+..++|+|++||||||+...+...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 35778999999999999998776654
No 386
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.37 E-value=0.19 Score=46.21 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
-++++|+|+.||||||+...+.....
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 37899999999999999987765543
No 387
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.34 E-value=0.15 Score=48.62 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+++|+|++||||||++..+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999998776654
No 388
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.27 E-value=0.2 Score=48.59 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=21.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+..+++.|++||||||+...+....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999998776654
No 389
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.21 E-value=0.17 Score=47.61 Aligned_cols=25 Identities=40% Similarity=0.623 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+..++|.|++||||||+...+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999988766544
No 390
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.16 E-value=0.24 Score=47.50 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=22.7
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+..++|+|+.||||||++..+....
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457889999999999999998776544
No 391
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.98 E-value=0.24 Score=47.70 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=24.7
Q ss_pred HHhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 15 ~~l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+..+.+++++|++||||||++..+....
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 346778899999999999999988766544
No 392
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.93 E-value=0.2 Score=47.46 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.++|.|++||||||++..+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57999999999999998776654
No 393
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.92 E-value=0.17 Score=54.36 Aligned_cols=33 Identities=30% Similarity=0.547 Sum_probs=26.4
Q ss_pred HHHHHHhccCCE--EEEEcCCCCcHHHHHHHHHHh
Q 005291 11 ETIVETVEQNPV--VVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 11 ~~il~~l~~~~~--vii~gpTGsGKTt~l~~~l~~ 43 (704)
+.+--.+..|.. +.|+||+|+||||++..++..
T Consensus 31 ~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 31 QLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 345556789999 999999999999999877654
No 394
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.89 E-value=0.22 Score=52.76 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=24.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHh
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
.+..++.++|.||+||||||++..+...
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4668899999999999999999877754
No 395
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.86 E-value=0.19 Score=48.82 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=21.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
....++|.|++||||||+...+....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999998776654
No 396
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.80 E-value=0.23 Score=52.16 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=24.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
...|+.++++||+|+||||++..++....
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred hcCCCEEEEECCCCccHHHHHHHHhcccc
Confidence 34789999999999999999988876554
No 397
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.67 E-value=0.21 Score=48.18 Aligned_cols=23 Identities=39% Similarity=0.652 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.++|+|++||||||+...+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999998776654
No 398
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.65 E-value=0.28 Score=45.66 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
.++.|+|++||||||++..++....
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 5789999999999999888776543
No 399
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.63 E-value=0.2 Score=47.02 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 22 VVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
.++|.|++||||||+...+.....
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999987766543
No 400
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.60 E-value=0.22 Score=47.93 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.++|+|++||||||+...+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999998776654
No 401
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.50 E-value=0.18 Score=53.20 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=25.7
Q ss_pred Hhcc--CCEEEEEcCCCCcHHHHHHHHHHhcCC
Q 005291 16 TVEQ--NPVVVVIGETGSGKSTQLSQILHRHGY 46 (704)
Q Consensus 16 ~l~~--~~~vii~gpTGsGKTt~l~~~l~~~~~ 46 (704)
.+.. ++.+.|+||+||||||++..+......
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456 889999999999999999988876544
No 402
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.48 E-value=0.24 Score=46.37 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
-..++|+|++||||||++..++...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3678999999999999998877654
No 403
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.42 E-value=0.28 Score=50.03 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+.++.|+|++||||||++..+....
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999999887665544
No 404
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.39 E-value=0.22 Score=51.84 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+++|+|||||||||+...+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 478999999999999887665543
No 405
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.37 E-value=0.22 Score=51.39 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..++|+|||||||||+...+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999887665543
No 406
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=89.37 E-value=0.23 Score=50.87 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=24.2
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
+..++.+.++||+|+||||++..++....
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccc
Confidence 34688999999999999999988766544
No 407
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.33 E-value=0.23 Score=47.50 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=22.4
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+..++|+|+.||||||+...+....
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457889999999999999988776543
No 408
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.31 E-value=0.26 Score=46.85 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+..++|+|++||||||+...+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999988776554
No 409
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.24 E-value=0.42 Score=46.24 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=27.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchh
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR 58 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~ 58 (704)
.|..+++.|+.||||||++..+........-..+..-.|.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~ 44 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG 44 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCC
Confidence 5778999999999999999877655432212233334564
No 410
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.20 E-value=0.1 Score=50.12 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.++|.|++||||||++..+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 58999999999999998776654
No 411
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=88.99 E-value=0.26 Score=46.93 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
...++|+|++||||||+...+....
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3478999999999999998776554
No 412
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.97 E-value=1 Score=56.41 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=28.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv 54 (704)
+..+..++|.||+|+||||++.+++...... ++.+++
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~-g~~Vly 765 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAF 765 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHc-CCCeEE
Confidence 5678999999999999999998888766543 334444
No 413
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.95 E-value=0.47 Score=45.92 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=27.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCC-cEEEEcchhh
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKS-GIIGVTQPRR 59 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~-~~ilv~~P~r 59 (704)
.|..+++.|+.||||||++..+........- ..++.-.|..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~ 43 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGG 43 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCC
Confidence 4789999999999999998776654432211 2334445653
No 414
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.92 E-value=0.2 Score=46.65 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=17.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+..+++.|+.||||||+...+....
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999998776554
No 415
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=88.87 E-value=0.23 Score=47.46 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 005291 22 VVVVIGETGSGKSTQLSQILH 42 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~ 42 (704)
++.|+|++||||||+...+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999987654
No 416
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.83 E-value=0.43 Score=44.94 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999998776544
No 417
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=88.83 E-value=0.36 Score=47.89 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
...+++.||+|+||||++..+....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4568999999999999988776654
No 418
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=88.82 E-value=0.27 Score=50.90 Aligned_cols=36 Identities=8% Similarity=0.153 Sum_probs=28.1
Q ss_pred HHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 9 YEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 9 ~~~~il~~l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..+.+...+..+..+++.||+|+|||+++..+....
T Consensus 35 ~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 35 MINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 344556666778899999999999999887776654
No 419
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.77 E-value=0.36 Score=49.11 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
...+++.||+|+|||+++..+....
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999887776554
No 420
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=88.75 E-value=0.21 Score=52.71 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 005291 22 VVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~ 43 (704)
..+|+|||||||||++-.+...
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7889999999999998766544
No 421
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.75 E-value=0.25 Score=45.83 Aligned_cols=23 Identities=39% Similarity=0.444 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+++|+|++||||||+...+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999988776654
No 422
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.71 E-value=0.31 Score=46.79 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=19.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHh
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
..+.+++.||+|+||||++..++..
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999888655443
No 423
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.71 E-value=0.27 Score=46.09 Aligned_cols=24 Identities=46% Similarity=0.675 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+++|+|++||||||+...+....
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999988776544
No 424
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=88.69 E-value=0.26 Score=47.00 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 005291 22 VVVVIGETGSGKSTQLSQILH 42 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~ 42 (704)
.++|+|++||||||+...+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999987765
No 425
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.58 E-value=0.32 Score=46.99 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=21.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+..+++.|++||||||+...+....
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999998776654
No 426
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.46 E-value=0.28 Score=45.87 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
..++|+|++||||||+...+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999887766543
No 427
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=88.45 E-value=1.9 Score=45.76 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=20.4
Q ss_pred HHhccCCEEEEEcCCCCcHHHHHHHHHHh
Q 005291 15 ETVEQNPVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 15 ~~l~~~~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
.....+-.+++.|++|+|||++...+-..
T Consensus 155 ~~a~~~~~vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 155 KISCAECPVLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp HHTTCCSCEEEECSTTSSHHHHHHHHHHH
T ss_pred HhcCCCCCeEEecCCCcCHHHHHHHHHHh
Confidence 33345567899999999999766544433
No 428
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.43 E-value=0.27 Score=45.27 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..++|+|++||||||+...+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999988776544
No 429
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.35 E-value=0.27 Score=48.72 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+.+++.||+|+||||++..+....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999999998877664
No 430
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.23 E-value=0.26 Score=52.36 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..++|+|||||||||+...+....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999887665543
No 431
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.20 E-value=0.34 Score=50.91 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=28.5
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv 54 (704)
-+..+.+++|.|++|+||||++.+++...... +..+++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~-g~~vly 96 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAF 96 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEE
Confidence 35678999999999999999998887765433 334444
No 432
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=88.19 E-value=0.2 Score=47.72 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=20.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHH
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQIL 41 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l 41 (704)
+..+..++++|++|+||||++..++
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHh
Confidence 4567789999999999999987654
No 433
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.12 E-value=0.34 Score=47.36 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=21.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+..+++.|++||||||+...+....
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999998776654
No 434
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=88.11 E-value=0.41 Score=49.40 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=24.7
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
-+..|.+++|.||+|+|||+++.+++...
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35567899999999999999998888753
No 435
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.05 E-value=0.31 Score=46.97 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.++|.|++||||||+...+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999998776654
No 436
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=88.05 E-value=0.29 Score=49.37 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
+-+++.||+||||||++..+.....
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcC
Confidence 3489999999999999988776643
No 437
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.00 E-value=0.24 Score=55.25 Aligned_cols=37 Identities=24% Similarity=0.200 Sum_probs=28.4
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEE
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII 52 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~i 52 (704)
.+.+|.+++|+|++||||||++..+........++.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i 401 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCV 401 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCE
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceE
Confidence 3567899999999999999999887776654433334
No 438
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=87.98 E-value=0.26 Score=53.24 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=31.4
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHHH
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA 62 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~la 62 (704)
.+.+++|.|+||||||+.+..++..... .+..++++-|.....
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~-~g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLL-RGDRMVIVDPNGDML 94 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHH-TTCEEEEEEETTHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEeCCCchh
Confidence 3567899999999999877555544322 356788888987764
No 439
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=87.95 E-value=0.29 Score=46.94 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
....+|+||+||||||++-.+....
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4578999999999999887665443
No 440
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.93 E-value=0.94 Score=56.73 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=28.7
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEE
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv 54 (704)
-+..+.+++|.||+|||||++..+++...... +..+++
T Consensus 30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~-G~~vlY 67 (1706)
T 3cmw_A 30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAF 67 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CcCCCeEEEEECCCCCCHHHHHHHHHHHHhhC-CCceEE
Confidence 46678999999999999999988887764433 334444
No 441
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.83 E-value=0.33 Score=47.22 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+++.|++||||||+...+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999998776554
No 442
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=87.75 E-value=0.48 Score=49.75 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=21.4
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
....+++.||||+|||+++..+....
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999887776654
No 443
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.73 E-value=0.37 Score=44.14 Aligned_cols=23 Identities=35% Similarity=0.241 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.++|+|++||||||+...+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999998776544
No 444
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.72 E-value=0.41 Score=49.97 Aligned_cols=29 Identities=28% Similarity=0.166 Sum_probs=23.8
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
..++.+++++|++|+||||++..++....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 44677899999999999999988776543
No 445
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=87.60 E-value=0.31 Score=45.71 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.++++|+.||||||+...+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999988776543
No 446
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=87.50 E-value=0.25 Score=49.20 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+..++++|++||||||+...+....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999998776654
No 447
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.47 E-value=0.2 Score=51.40 Aligned_cols=40 Identities=10% Similarity=0.051 Sum_probs=29.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhcCCC-CCcEEEEcch
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYT-KSGIIGVTQP 57 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~~~~-~~~~ilv~~P 57 (704)
+..| .+.|.||+|+||||+..+++...... .+++++++..
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 5567 89999999999999998888765432 2556666543
No 448
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=87.46 E-value=0.11 Score=53.56 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=23.2
Q ss_pred HhccCCEEEEEcCCCCcHHHHHHHHHHh
Q 005291 16 TVEQNPVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 16 ~l~~~~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
.+..|+.++++||+|+||||++..++..
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccc
Confidence 4457899999999999999999877543
No 449
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=87.29 E-value=0.31 Score=48.67 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=20.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHh
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
....++++|++||||||++..+...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999999998776554
No 450
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=87.26 E-value=0.39 Score=50.36 Aligned_cols=27 Identities=26% Similarity=0.137 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCC
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHGY 46 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~~ 46 (704)
+..+.|+|++|+||||++..++.....
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 568999999999999999988875443
No 451
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.10 E-value=0.69 Score=45.50 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=22.5
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
..+..+++.|+.||||||++..+.....
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999887765443
No 452
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=86.95 E-value=0.33 Score=46.87 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 005291 20 NPVVVVIGETGSGKSTQLSQILH 42 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~ 42 (704)
+.+++|+|+.||||||++..+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999876643
No 453
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=86.86 E-value=0.46 Score=46.46 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=19.9
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
...|..+++.|+.||||||++..+....
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999988766544
No 454
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=86.84 E-value=0.36 Score=48.62 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.++|.||+||||||++..+....
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 48999999999999998877665
No 455
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=86.77 E-value=0.49 Score=52.02 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=21.1
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHH
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILH 42 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~ 42 (704)
..+..++|.|+||||||+++..++.
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999998877665
No 456
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=86.73 E-value=0.68 Score=44.87 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=28.1
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcch
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P 57 (704)
..|..+++.|+.||||||++..+...... ...+.-.|
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~---~~~~~~ep 39 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP---NCKLLKFP 39 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS---SEEEEESS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc---cceEEEec
Confidence 36889999999999999999887766543 23444566
No 457
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=86.71 E-value=0.4 Score=45.13 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.++|+|++|+||||++..++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999887654
No 458
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=86.63 E-value=0.37 Score=45.64 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHh
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
..++.|+|++||||||+...+...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 347899999999999998766553
No 459
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.55 E-value=0.98 Score=52.47 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+-+++.||+|+|||.++..+..+.
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHh
Confidence 458999999999998887777664
No 460
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.34 E-value=0.39 Score=45.41 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.++++|++|+||||++..++...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999998887653
No 461
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=86.34 E-value=0.97 Score=43.33 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=26.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEE-Ecchhh
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-VTQPRR 59 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~~~~~~~~il-v~~P~r 59 (704)
+..+++.|+-|||||||+..+..... .+..++ .-.|..
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~--~~~~v~~~~eP~~ 40 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV--KDYDVIMTREPGG 40 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT--TTSCEEEEESSTT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH--CCCCEEEeeCCCC
Confidence 45789999999999999977665543 233344 345643
No 462
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=86.03 E-value=0.16 Score=49.80 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCCC
Q 005291 22 VVVVIGETGSGKSTQLSQILHRHGYTKS 49 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~~~~~~ 49 (704)
++.|+||+||||||++..+........+
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G 56 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLT 56 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCC
Confidence 4578899999999999988877665544
No 463
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=85.89 E-value=0.5 Score=50.99 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=23.3
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 18 EQNPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 18 ~~~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
..+++++|+||+||||||++..+.....
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3578999999999999999987776543
No 464
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=85.83 E-value=0.4 Score=50.63 Aligned_cols=23 Identities=39% Similarity=0.739 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 005291 20 NPVVVVIGETGSGKSTQLSQILH 42 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~ 42 (704)
....+|+||||+|||+++-.+.+
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999998876654
No 465
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=85.71 E-value=0.83 Score=43.48 Aligned_cols=40 Identities=25% Similarity=0.284 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCCCcEEEEcchhhHH
Q 005291 22 VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA 61 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~~~~~~~~ilv~~P~r~l 61 (704)
.+++.|+-|||||||+..+...........+..-.|....
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~ 41 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTE 41 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCc
Confidence 4688999999999998766554432222234444665433
No 466
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=85.55 E-value=0.43 Score=49.11 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=22.6
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHh
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
+..+..++|.||+|+|||+++.+++..
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 445677899999999999999888765
No 467
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=85.30 E-value=0.4 Score=45.02 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 005291 23 VVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 23 vii~gpTGsGKTt~l~~~l~~ 43 (704)
++|.|++|||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999888754
No 468
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=85.21 E-value=0.6 Score=45.70 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=22.7
Q ss_pred hccCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 17 l~~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
...+..+.|+|++||||||+...+....
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4567889999999999999988776544
No 469
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=85.17 E-value=0.61 Score=45.75 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=21.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
..-++.|.||+||||||+...+....
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999998776554
No 470
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=84.64 E-value=0.82 Score=53.15 Aligned_cols=78 Identities=9% Similarity=0.067 Sum_probs=64.3
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEccc-ccccccCCC
Q 005291 213 EGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNI-AETSLTVDG 291 (704)
Q Consensus 213 ~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaTni-ae~gidip~ 291 (704)
+.+++|.+|++.-+...++.+.+.+.. .++.+..+||+++..++..+++....|...|+|+|.. +...+.+.+
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~------~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~ 490 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSK------FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKN 490 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTC------SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhh------cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccC
Confidence 468999999999999999988887532 2678999999999999988888888888999999963 344567788
Q ss_pred eEEEE
Q 005291 292 VVYVI 296 (704)
Q Consensus 292 v~~VI 296 (704)
+.+||
T Consensus 491 l~lVV 495 (780)
T 1gm5_A 491 LGLVI 495 (780)
T ss_dssp CCEEE
T ss_pred CceEE
Confidence 87776
No 471
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=84.59 E-value=0.49 Score=49.68 Aligned_cols=44 Identities=9% Similarity=0.136 Sum_probs=27.6
Q ss_pred ccCCCCHHHHhhccCCCCCCCcEEEEEcccccccccCCCeEEEEeCCc
Q 005291 253 LHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (704)
Q Consensus 253 lh~~l~~~~r~~v~~~~~~g~~kIlvaTniae~gidip~v~~VId~g~ 300 (704)
..++|.+..|..+++....-..-+|++|. .+. ..+-.++|+-|.
T Consensus 301 p~s~LD~~~~~~l~~~l~~~~qt~i~~th-~~~---~~~~i~~l~~G~ 344 (359)
T 2o5v_A 301 FTAELDPHRRQYLLDLAASVPQAIVTGTE-LAP---GAALTLRAQAGR 344 (359)
T ss_dssp GGGCCCHHHHHHHHHHHHHSSEEEEEESS-CCT---TCSEEEEEETTE
T ss_pred ccccCCHHHHHHHHHHHHhcCcEEEEEEe-ccc---cCCEEEEEECCE
Confidence 46789988888777654332245666776 333 555566666564
No 472
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=84.13 E-value=1.2 Score=41.38 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh
Q 005291 21 PVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
-.++++|++|+||||++..+...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999888764
No 473
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=83.97 E-value=0.63 Score=42.44 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 005291 22 VVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~ 43 (704)
.++++|++|+||||++..+...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999888643
No 474
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=83.79 E-value=0.69 Score=43.91 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHh
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
+-++.|+|+.||||||+...+...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999998876654
No 475
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=83.74 E-value=0.7 Score=41.44 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 005291 22 VVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~ 43 (704)
.++++|++|+||||++..++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999888754
No 476
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=83.73 E-value=0.6 Score=43.05 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=20.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHh
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
.+..++++|++|+||||++..+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999887653
No 477
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=83.67 E-value=0.6 Score=47.42 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh
Q 005291 21 PVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
..+++.|++||||||+...+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999877653
No 478
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=83.61 E-value=0.7 Score=41.46 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 005291 22 VVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~ 43 (704)
.++++|++|+||||++..++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999888764
No 479
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=83.55 E-value=1.1 Score=46.84 Aligned_cols=37 Identities=27% Similarity=0.479 Sum_probs=25.8
Q ss_pred hHHHHHHHHHh----ccCCE--EEEEcCCCCcHHHHHHHHHHh
Q 005291 7 LQYEETIVETV----EQNPV--VVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 7 ~~~~~~il~~l----~~~~~--vii~gpTGsGKTt~l~~~l~~ 43 (704)
....++++..+ ..|+. ++++|+.||||||+...+...
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 34455555554 46665 999999999999988655443
No 480
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=83.39 E-value=5.4 Score=40.88 Aligned_cols=120 Identities=13% Similarity=0.026 Sum_probs=65.9
Q ss_pred HHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCCCCeEEEeccCCCCHHHHhhccCCCCCCCcEEEEEc
Q 005291 201 LKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVST 280 (704)
Q Consensus 201 ~~~~~~i~~~~~~g~iLVFl~~~~~i~~~~~~L~~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~~~~g~~kIlvaT 280 (704)
++.++.... +.+.+||||+.......-+.+++.. .++...-+.|.....+++. .+....|.+.|
T Consensus 114 L~~LL~~l~-~~~~kVLIfsq~t~~LDilE~~l~~----------~~~~y~RlDG~~~~~~~k~-----~~~~~~i~Llt 177 (328)
T 3hgt_A 114 LRDLINLVQ-EYETETAIVCRPGRTMDLLEALLLG----------NKVHIKRYDGHSIKSAAAA-----NDFSCTVHLFS 177 (328)
T ss_dssp HHHHHHHHT-TSCEEEEEEECSTHHHHHHHHHHTT----------SSCEEEESSSCCC------------CCSEEEEEEE
T ss_pred HHHHHHHHH-hCCCEEEEEECChhHHHHHHHHHhc----------CCCceEeCCCCchhhhhhc-----ccCCceEEEEE
Confidence 344444333 3567999999988877766666643 3788888998855433221 23456676767
Q ss_pred cccccccc-----CCCeEEEEeCCccccccccCCCCccccccccccH-HhHHhhccccC--CCCCceEEEecCCccccc
Q 005291 281 NIAETSLT-----VDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISK-VQANQRVGRAG--RTRPGKCYRLYPSTVYHD 351 (704)
Q Consensus 281 niae~gid-----ip~v~~VId~g~~k~~~~~~~~g~~~l~~~~iS~-~~~~QR~GRaG--R~~~G~c~~L~~~~~~~~ 351 (704)
....-|++ .-+.+.||- ||+.-. |-+. .+++.|+-|.| ..++=.+|||.+....+.
T Consensus 178 sag~~gin~~~~nl~~aD~VI~--------~DsdwN-------p~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 178 SEGINFTKYPIKSKARFDMLIC--------LDTTVD-------TSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp SSCCCTTTSCCCCCSCCSEEEE--------CSTTCC-------TTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CCCCCCcCcccccCCCCCEEEE--------ECCCCC-------CCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 76665665 445666663 333211 1122 33344555553 335668999998887766
No 481
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=83.30 E-value=0.69 Score=51.55 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=22.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.+..+++.||+|+||||++..+....
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 47899999999999999998776655
No 482
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=83.23 E-value=0.7 Score=41.72 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 005291 22 VVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~ 43 (704)
.++++|++|+||||++..++..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999888754
No 483
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=83.07 E-value=0.74 Score=43.66 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
++.|.|++||||||+...+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999998776544
No 484
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=82.98 E-value=0.77 Score=45.44 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 21 PVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
.++.|.|+.||||||+...+.....
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3689999999999999876655443
No 485
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=82.90 E-value=0.74 Score=45.18 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+..+++.|+.||||||++..+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4578999999999999998776654
No 486
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=82.78 E-value=1.1 Score=48.80 Aligned_cols=32 Identities=25% Similarity=0.471 Sum_probs=23.9
Q ss_pred HHHHHh--ccCCEEEEEcCCCCcHHHHHHHHHHh
Q 005291 12 TIVETV--EQNPVVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 12 ~il~~l--~~~~~vii~gpTGsGKTt~l~~~l~~ 43 (704)
.++..+ ....++++.||+|+|||+++..+...
T Consensus 191 ~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 344444 35568899999999999988766554
No 487
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=82.73 E-value=0.94 Score=49.24 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
+..+++.||+|+|||+++..+....
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHh
Confidence 3579999999999998887666554
No 488
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=82.56 E-value=0.83 Score=41.05 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 005291 22 VVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~ 43 (704)
.++++|++|+||||++..++..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999887754
No 489
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=82.49 E-value=0.83 Score=41.30 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.++++|++|+||||++..++...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999998887654
No 490
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.40 E-value=0.83 Score=41.25 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 005291 22 VVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
.++++|++|+||||++..++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999998887643
No 491
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=82.38 E-value=0.84 Score=41.84 Aligned_cols=22 Identities=23% Similarity=0.673 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 005291 22 VVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~ 43 (704)
.++++|++|+||||++..++..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999888764
No 492
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=82.35 E-value=0.77 Score=41.55 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 005291 22 VVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~ 43 (704)
.++++|++|+||||++..++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999888754
No 493
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=82.33 E-value=0.76 Score=49.33 Aligned_cols=26 Identities=38% Similarity=0.496 Sum_probs=21.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
....++++|++||||||+...+....
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999998776543
No 494
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=82.32 E-value=0.78 Score=42.53 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 005291 22 VVVVIGETGSGKSTQLSQILH 42 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~ 42 (704)
.++++|++|+||||++..++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999988865
No 495
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=82.15 E-value=0.64 Score=43.27 Aligned_cols=21 Identities=43% Similarity=0.825 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 005291 22 VVVVIGETGSGKSTQLSQILH 42 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~ 42 (704)
-++|+|++|+||||++..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999987764
No 496
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=81.95 E-value=0.84 Score=41.05 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 005291 22 VVVVIGETGSGKSTQLSQILHR 43 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~~ 43 (704)
.++++|++|+||||++..++..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999887754
No 497
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=81.91 E-value=1.4 Score=42.24 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=22.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcC
Q 005291 19 QNPVVVVIGETGSGKSTQLSQILHRHG 45 (704)
Q Consensus 19 ~~~~vii~gpTGsGKTt~l~~~l~~~~ 45 (704)
.-..++++|++|+||||++..++....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 345889999999999999988887643
No 498
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=81.87 E-value=0.82 Score=48.19 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 005291 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (704)
Q Consensus 20 ~~~vii~gpTGsGKTt~l~~~l~~~ 44 (704)
...+++.||+|+|||+++..+....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999887776654
No 499
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=81.80 E-value=0.81 Score=41.44 Aligned_cols=21 Identities=33% Similarity=0.533 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 005291 22 VVVVIGETGSGKSTQLSQILH 42 (704)
Q Consensus 22 ~vii~gpTGsGKTt~l~~~l~ 42 (704)
.++++|++|+||||++..++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999988765
No 500
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=81.68 E-value=0.76 Score=46.43 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=18.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHH
Q 005291 21 PVVVVIGETGSGKSTQLSQIL 41 (704)
Q Consensus 21 ~~vii~gpTGsGKTt~l~~~l 41 (704)
.+++|+|+.||||||+...+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999988766
Done!