Query 005292
Match_columns 704
No_of_seqs 272 out of 1850
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 21:09:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 6.8E-16 2.3E-20 132.6 5.7 73 632-704 12-88 (91)
2 1x4j_A Ring finger protein 38; 99.5 1.6E-15 5.3E-20 125.1 2.2 64 641-704 5-71 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 2.5E-14 8.4E-19 110.7 4.6 50 655-704 4-54 (55)
4 2ep4_A Ring finger protein 24; 99.5 3.4E-14 1.2E-18 116.3 4.7 50 654-703 13-62 (74)
5 2kiz_A E3 ubiquitin-protein li 99.4 4.5E-14 1.5E-18 114.1 4.9 50 655-704 13-62 (69)
6 2ect_A Ring finger protein 126 99.4 6.4E-14 2.2E-18 115.7 4.8 50 655-704 14-63 (78)
7 2ecm_A Ring finger and CHY zin 99.4 2.4E-13 8.3E-18 104.9 5.2 50 655-704 4-54 (55)
8 2ecl_A Ring-box protein 2; RNF 99.4 2.1E-13 7.3E-18 115.2 5.3 50 655-704 14-75 (81)
9 2ea6_A Ring finger protein 4; 99.3 6.4E-13 2.2E-17 106.2 3.8 50 655-704 14-67 (69)
10 1v87_A Deltex protein 2; ring- 99.3 5.7E-13 2E-17 117.3 3.9 49 655-703 24-92 (114)
11 3dpl_R Ring-box protein 1; ubi 99.3 1.4E-12 4.9E-17 116.8 5.5 49 655-703 36-99 (106)
12 3ng2_A RNF4, snurf, ring finge 99.3 5.7E-13 2E-17 107.5 2.2 50 655-704 9-62 (71)
13 2xeu_A Ring finger protein 4; 99.3 1.1E-12 3.6E-17 103.5 2.1 49 656-704 3-55 (64)
14 1chc_A Equine herpes virus-1 r 99.3 2.8E-12 9.4E-17 103.2 4.3 48 655-704 4-51 (68)
15 2d8t_A Dactylidin, ring finger 99.2 3.2E-12 1.1E-16 104.4 3.3 47 655-704 14-60 (71)
16 2ecn_A Ring finger protein 141 99.2 1.8E-12 6E-17 105.1 1.7 46 655-704 14-59 (70)
17 2ct2_A Tripartite motif protei 99.2 8.6E-12 3E-16 104.2 5.4 49 655-703 14-66 (88)
18 2djb_A Polycomb group ring fin 99.2 9.6E-12 3.3E-16 101.8 5.2 47 655-704 14-61 (72)
19 4ayc_A E3 ubiquitin-protein li 99.2 5E-12 1.7E-16 115.9 3.2 46 656-704 53-98 (138)
20 2d8s_A Cellular modulator of i 99.2 9.6E-12 3.3E-16 106.3 4.2 48 655-703 14-68 (80)
21 4a0k_B E3 ubiquitin-protein li 99.2 3.2E-12 1.1E-16 116.9 0.5 50 654-703 46-110 (117)
22 2csy_A Zinc finger protein 183 99.2 1.5E-11 5.1E-16 102.6 4.3 47 655-704 14-60 (81)
23 2ysl_A Tripartite motif-contai 99.1 2.1E-11 7.1E-16 99.1 4.5 47 655-704 19-68 (73)
24 2yur_A Retinoblastoma-binding 99.1 2.7E-11 9.1E-16 100.0 5.2 46 655-703 14-62 (74)
25 2ecw_A Tripartite motif-contai 99.1 4.1E-11 1.4E-15 98.9 5.9 47 655-704 18-70 (85)
26 2ecv_A Tripartite motif-contai 99.1 4.8E-11 1.6E-15 98.4 5.0 47 655-704 18-70 (85)
27 2ecy_A TNF receptor-associated 99.1 3.1E-11 1.1E-15 97.1 3.5 47 655-704 14-61 (66)
28 1t1h_A Gspef-atpub14, armadill 99.1 4.9E-11 1.7E-15 98.4 4.0 47 655-704 7-54 (78)
29 3lrq_A E3 ubiquitin-protein li 99.1 4E-11 1.4E-15 104.6 3.4 46 656-704 22-69 (100)
30 4ap4_A E3 ubiquitin ligase RNF 99.1 3.1E-11 1.1E-15 106.8 2.3 50 655-704 6-59 (133)
31 2y43_A E3 ubiquitin-protein li 99.1 6.5E-11 2.2E-15 102.2 3.7 46 656-704 22-68 (99)
32 2ysj_A Tripartite motif-contai 99.0 1.5E-10 5E-15 92.1 5.1 42 655-699 19-63 (63)
33 2egp_A Tripartite motif-contai 99.0 2.7E-11 9.4E-16 99.5 0.6 47 655-704 11-64 (79)
34 3fl2_A E3 ubiquitin-protein li 99.0 8.7E-11 3E-15 105.4 3.8 46 656-704 52-98 (124)
35 2ckl_A Polycomb group ring fin 99.0 1E-10 3.5E-15 102.6 3.8 47 655-704 14-61 (108)
36 1jm7_A BRCA1, breast cancer ty 99.0 1.6E-10 5.4E-15 100.8 3.9 46 656-704 21-69 (112)
37 4ap4_A E3 ubiquitin ligase RNF 99.0 1.2E-10 4E-15 103.2 2.9 52 653-704 69-124 (133)
38 2ecj_A Tripartite motif-contai 99.0 2E-10 6.7E-15 89.2 3.5 42 655-699 14-58 (58)
39 2ckl_B Ubiquitin ligase protei 99.0 1.8E-10 6.2E-15 108.0 3.9 46 656-703 54-100 (165)
40 3ztg_A E3 ubiquitin-protein li 99.0 2.2E-10 7.6E-15 97.2 3.7 46 655-703 12-60 (92)
41 1g25_A CDK-activating kinase a 99.0 2.1E-10 7.3E-15 91.9 3.0 49 656-704 3-54 (65)
42 3hct_A TNF receptor-associated 98.9 2.7E-10 9.2E-15 101.7 3.2 47 655-704 17-64 (118)
43 1z6u_A NP95-like ring finger p 98.9 3.4E-10 1.2E-14 106.2 3.8 46 656-704 78-124 (150)
44 3l11_A E3 ubiquitin-protein li 98.9 2.2E-10 7.4E-15 101.4 1.1 45 656-703 15-60 (115)
45 2ct0_A Non-SMC element 1 homol 98.9 6.6E-10 2.3E-14 94.4 3.6 46 656-703 15-62 (74)
46 1rmd_A RAG1; V(D)J recombinati 98.9 8E-10 2.7E-14 97.9 3.6 46 656-704 23-69 (116)
47 2kr4_A Ubiquitin conjugation f 98.8 1.3E-09 4.6E-14 93.1 3.8 47 655-704 13-59 (85)
48 2kre_A Ubiquitin conjugation f 98.8 1.8E-09 6.2E-14 95.3 3.4 47 655-704 28-74 (100)
49 1bor_A Transcription factor PM 98.8 8.8E-10 3E-14 87.0 0.9 45 654-704 4-48 (56)
50 2vje_A E3 ubiquitin-protein li 98.8 2.5E-09 8.6E-14 86.9 3.6 47 655-704 7-56 (64)
51 1wgm_A Ubiquitin conjugation f 98.8 3.9E-09 1.3E-13 92.9 4.4 47 655-704 21-68 (98)
52 2y1n_A E3 ubiquitin-protein li 98.8 2.9E-09 1E-13 114.4 4.3 46 656-704 332-378 (389)
53 1jm7_B BARD1, BRCA1-associated 98.7 1.8E-09 6.3E-14 96.2 1.6 43 656-703 22-65 (117)
54 2c2l_A CHIP, carboxy terminus 98.7 4.2E-09 1.4E-13 103.7 4.0 47 655-704 207-254 (281)
55 1e4u_A Transcriptional repress 98.7 6.2E-09 2.1E-13 88.4 4.3 50 654-704 9-61 (78)
56 3knv_A TNF receptor-associated 98.7 2.3E-09 8E-14 99.7 1.1 46 655-703 30-76 (141)
57 2vje_B MDM4 protein; proto-onc 98.7 6E-09 2.1E-13 84.4 2.9 46 656-704 7-55 (63)
58 4ic3_A E3 ubiquitin-protein li 98.6 6.5E-09 2.2E-13 86.3 2.0 42 656-704 24-66 (74)
59 3hcs_A TNF receptor-associated 98.6 1.3E-08 4.6E-13 95.5 3.2 47 655-704 17-64 (170)
60 2yu4_A E3 SUMO-protein ligase 98.6 1.8E-08 6.1E-13 87.3 3.1 45 655-702 6-59 (94)
61 3k1l_B Fancl; UBC, ring, RWD, 98.5 1.5E-08 5.2E-13 107.8 1.0 51 654-704 306-372 (381)
62 2ecg_A Baculoviral IAP repeat- 98.5 4.9E-08 1.7E-12 80.9 2.2 42 656-704 25-67 (75)
63 2f42_A STIP1 homology and U-bo 98.5 7E-08 2.4E-12 94.1 3.6 47 655-704 105-152 (179)
64 1vyx_A ORF K3, K3RING; zinc-bi 98.4 7.9E-08 2.7E-12 78.1 3.0 47 654-703 4-57 (60)
65 1wim_A KIAA0161 protein; ring 98.4 8.3E-08 2.8E-12 82.5 1.3 47 656-702 5-61 (94)
66 2ea5_A Cell growth regulator w 98.3 3.3E-07 1.1E-11 75.6 4.3 43 655-704 14-57 (68)
67 2yho_A E3 ubiquitin-protein li 98.3 1.3E-07 4.3E-12 80.1 1.3 42 656-704 18-60 (79)
68 2bay_A PRE-mRNA splicing facto 98.3 2.8E-07 9.4E-12 75.0 2.5 45 657-704 4-49 (61)
69 3t6p_A Baculoviral IAP repeat- 98.2 2.4E-07 8.2E-12 98.0 1.6 43 655-704 294-337 (345)
70 3htk_C E3 SUMO-protein ligase 98.1 7.6E-07 2.6E-11 91.7 2.4 47 655-703 180-230 (267)
71 3vk6_A E3 ubiquitin-protein li 97.8 1E-05 3.6E-10 72.7 3.5 45 658-704 3-48 (101)
72 3nw0_A Non-structural maintena 97.3 6.8E-05 2.3E-09 75.7 2.1 46 656-703 180-227 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 92.2 0.056 1.9E-06 46.4 2.1 35 656-690 3-38 (101)
74 2ko5_A Ring finger protein Z; 91.3 0.06 2E-06 48.3 1.3 43 656-703 28-71 (99)
75 2lri_C Autoimmune regulator; Z 85.5 0.41 1.4E-05 39.6 2.5 44 656-702 12-59 (66)
76 1we9_A PHD finger family prote 78.7 0.53 1.8E-05 37.8 0.7 48 654-701 4-57 (64)
77 3m62_A Ubiquitin conjugation f 76.4 1.4 4.8E-05 52.6 3.6 46 656-704 891-937 (968)
78 1wil_A KIAA1045 protein; ring 72.4 2.1 7.1E-05 37.9 2.7 34 655-689 14-47 (89)
79 2ysm_A Myeloid/lymphoid or mix 69.2 1.5 5.3E-05 38.6 1.3 46 655-700 6-55 (111)
80 2k16_A Transcription initiatio 67.5 0.67 2.3E-05 38.4 -1.4 46 656-702 18-68 (75)
81 2l5u_A Chromodomain-helicase-D 67.2 1.9 6.6E-05 34.7 1.4 44 655-701 10-57 (61)
82 1f62_A Transcription factor WS 63.3 2.8 9.6E-05 32.2 1.5 45 658-702 2-50 (51)
83 1mm2_A MI2-beta; PHD, zinc fin 61.7 2 6.7E-05 34.7 0.4 46 654-702 7-56 (61)
84 1wep_A PHF8; structural genomi 61.2 5.9 0.0002 33.2 3.3 46 656-702 12-63 (79)
85 2lbm_A Transcriptional regulat 60.5 6.9 0.00024 37.0 4.0 46 653-701 60-116 (142)
86 2kgg_A Histone demethylase jar 57.8 12 0.00042 29.0 4.4 43 658-700 4-52 (52)
87 2yql_A PHD finger protein 21A; 57.3 1.3 4.5E-05 34.9 -1.3 44 655-701 8-55 (56)
88 2lv9_A Histone-lysine N-methyl 55.5 2.3 7.9E-05 37.3 -0.2 43 658-701 30-75 (98)
89 2yw8_A RUN and FYVE domain-con 53.1 7.5 0.00026 32.9 2.6 41 649-689 12-53 (82)
90 2puy_A PHD finger protein 21A; 50.2 2.8 9.7E-05 33.4 -0.4 44 655-701 4-51 (60)
91 3v43_A Histone acetyltransfera 50.0 14 0.00047 32.8 3.9 32 656-687 5-42 (112)
92 1xwh_A Autoimmune regulator; P 49.0 2.8 9.5E-05 34.2 -0.7 44 655-701 7-54 (66)
93 1weu_A Inhibitor of growth fam 47.8 7.3 0.00025 34.3 1.7 42 657-702 37-85 (91)
94 1z2q_A LM5-1; membrane protein 46.3 17 0.00058 30.8 3.8 40 650-689 15-55 (84)
95 1fp0_A KAP-1 corepressor; PHD 45.7 7 0.00024 34.3 1.3 45 654-701 23-71 (88)
96 3o70_A PHD finger protein 13; 43.8 4.4 0.00015 33.5 -0.2 45 656-701 19-66 (68)
97 3i2d_A E3 SUMO-protein ligase 43.6 14 0.00047 39.9 3.4 45 656-703 249-298 (371)
98 3ql9_A Transcriptional regulat 42.5 16 0.00055 34.0 3.3 46 653-701 54-110 (129)
99 1wem_A Death associated transc 42.4 7.9 0.00027 32.1 1.1 44 657-701 17-69 (76)
100 3t7l_A Zinc finger FYVE domain 42.2 13 0.00043 32.1 2.3 38 653-690 17-55 (90)
101 2vpb_A Hpygo1, pygopus homolog 41.3 16 0.00054 30.0 2.7 46 655-700 7-64 (65)
102 1wen_A Inhibitor of growth fam 41.2 11 0.00039 31.3 1.8 40 656-702 16-65 (71)
103 4fo9_A E3 SUMO-protein ligase 40.7 17 0.00057 39.2 3.5 44 657-703 216-264 (360)
104 2cu8_A Cysteine-rich protein 2 40.5 14 0.00049 29.6 2.3 38 656-703 9-46 (76)
105 1joc_A EEA1, early endosomal a 40.4 15 0.0005 33.6 2.6 38 652-689 65-103 (125)
106 3v43_A Histone acetyltransfera 39.9 10 0.00035 33.7 1.5 45 657-701 62-111 (112)
107 1wev_A Riken cDNA 1110020M19; 39.6 5.4 0.00019 34.4 -0.3 46 656-701 16-71 (88)
108 2co8_A NEDD9 interacting prote 39.3 20 0.00069 29.5 3.1 38 656-703 15-52 (82)
109 1x4u_A Zinc finger, FYVE domai 39.0 23 0.00078 30.0 3.4 39 651-689 9-48 (84)
110 1wew_A DNA-binding family prot 38.9 6.5 0.00022 33.0 0.0 45 656-701 16-71 (78)
111 3mpx_A FYVE, rhogef and PH dom 37.7 6.9 0.00024 41.1 0.0 50 653-702 372-429 (434)
112 2xb1_A Pygopus homolog 2, B-ce 36.4 15 0.00052 32.6 2.0 46 656-701 3-60 (105)
113 1y02_A CARP2, FYVE-ring finger 36.4 5.2 0.00018 36.8 -1.0 45 655-699 18-63 (120)
114 2dj7_A Actin-binding LIM prote 35.9 21 0.00073 29.4 2.7 38 656-703 15-52 (80)
115 1iml_A CRIP, cysteine rich int 35.8 12 0.00041 30.1 1.2 43 656-702 27-70 (76)
116 1dvp_A HRS, hepatocyte growth 35.8 29 0.00099 33.9 4.1 34 656-689 161-195 (220)
117 2kwj_A Zinc finger protein DPF 35.5 12 0.00041 33.4 1.2 33 657-689 2-41 (114)
118 1wee_A PHD finger family prote 35.3 5 0.00017 33.1 -1.2 45 656-701 16-65 (72)
119 2yt5_A Metal-response element- 34.6 23 0.00078 28.3 2.6 48 655-702 5-61 (66)
120 2e6r_A Jumonji/ARID domain-con 33.4 3.2 0.00011 36.1 -2.8 46 656-701 16-65 (92)
121 2e6s_A E3 ubiquitin-protein li 32.8 11 0.00037 31.9 0.4 45 657-701 27-76 (77)
122 3ask_A E3 ubiquitin-protein li 31.8 12 0.00042 37.8 0.7 46 657-702 175-225 (226)
123 2pv0_B DNA (cytosine-5)-methyl 30.5 28 0.00095 37.8 3.2 46 653-701 90-147 (386)
124 3shb_A E3 ubiquitin-protein li 30.1 6.8 0.00023 33.3 -1.2 41 658-701 28-76 (77)
125 1zbd_B Rabphilin-3A; G protein 29.7 20 0.00069 33.3 1.7 32 655-686 54-87 (134)
126 2l43_A N-teminal domain from h 29.0 8.6 0.00029 33.2 -0.8 47 655-701 24-74 (88)
127 3zyq_A Hepatocyte growth facto 28.5 23 0.0008 35.0 2.1 34 656-689 164-198 (226)
128 2cs3_A Protein C14ORF4, MY039 28.4 47 0.0016 29.3 3.7 37 655-692 14-52 (93)
129 1wfk_A Zinc finger, FYVE domai 28.3 34 0.0012 29.5 2.8 35 655-689 8-43 (88)
130 1x63_A Skeletal muscle LIM-pro 28.0 49 0.0017 26.7 3.6 38 657-703 16-53 (82)
131 1x4k_A Skeletal muscle LIM-pro 27.4 49 0.0017 25.9 3.4 28 657-685 6-33 (72)
132 2d8v_A Zinc finger FYVE domain 27.0 24 0.00081 29.9 1.5 29 656-688 8-37 (67)
133 1wyh_A SLIM 2, skeletal muscle 26.0 46 0.0016 26.1 3.0 28 657-685 6-33 (72)
134 1x4l_A Skeletal muscle LIM-pro 25.4 51 0.0017 26.0 3.2 38 657-703 6-45 (72)
135 3asl_A E3 ubiquitin-protein li 25.3 12 0.00042 30.9 -0.5 44 658-702 20-69 (70)
136 1x68_A FHL5 protein; four-and- 25.0 54 0.0019 26.2 3.3 40 656-703 5-45 (76)
137 1vfy_A Phosphatidylinositol-3- 24.8 38 0.0013 27.9 2.4 33 657-689 12-45 (73)
138 2l3k_A Rhombotin-2, linker, LI 24.3 40 0.0014 29.7 2.6 35 656-691 36-70 (123)
139 1g47_A Pinch protein; LIM doma 23.4 69 0.0023 25.4 3.6 39 656-703 11-49 (77)
140 2dar_A PDZ and LIM domain prot 23.3 47 0.0016 27.6 2.7 37 656-703 25-61 (90)
141 1x61_A Thyroid receptor intera 23.0 68 0.0023 25.1 3.5 33 657-691 34-66 (72)
142 2o35_A Hypothetical protein DU 22.9 29 0.00098 31.5 1.3 11 681-691 43-53 (105)
143 3fyb_A Protein of unknown func 22.9 29 0.00098 31.5 1.3 12 680-691 41-52 (104)
144 2ysm_A Myeloid/lymphoid or mix 21.7 13 0.00044 32.7 -1.2 44 658-701 56-103 (111)
145 3kqi_A GRC5, PHD finger protei 21.6 18 0.00063 29.9 -0.1 46 656-701 9-60 (75)
146 3c6w_A P28ING5, inhibitor of g 20.9 12 0.00042 30.0 -1.3 42 657-701 9-57 (59)
147 1x64_A Alpha-actinin-2 associa 20.7 71 0.0024 26.4 3.3 37 656-703 25-61 (89)
148 1zfo_A LAsp-1; LIM domain, zin 20.6 26 0.00089 24.6 0.5 28 657-686 4-31 (31)
149 3a1b_A DNA (cytosine-5)-methyl 20.0 47 0.0016 32.1 2.3 37 652-692 75-114 (159)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.59 E-value=6.8e-16 Score=132.65 Aligned_cols=73 Identities=37% Similarity=0.752 Sum_probs=63.8
Q ss_pred cCCCCCCHHHHhcCCcceeecCC----CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 632 NHQSGASANQINSLPLSTVQTDN----FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 632 ~~~~GaS~e~I~sLP~sti~~d~----~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
....+++++.|..||...+.... .+..|+||++.|..++.++.|||+|.||..||.+||..+.+||+||..|.
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred cCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 34568999999999988766433 35789999999999999999999999999999999999999999999873
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.6e-15 Score=125.05 Aligned_cols=64 Identities=28% Similarity=0.758 Sum_probs=54.5
Q ss_pred HHhcCCcceeecC---CCCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 641 QINSLPLSTVQTD---NFEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 641 ~I~sLP~sti~~d---~~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
.|..||...+... ..+..|+||++.|..++.++.|||+|+||..||.+||+.+.+||+||.+|.
T Consensus 5 ~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp CCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred hHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 4566776665432 246789999999999999999999999999999999999999999999874
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.47 E-value=2.5e-14 Score=110.75 Aligned_cols=50 Identities=38% Similarity=0.983 Sum_probs=46.3
Q ss_pred CCCcccccCCCCCCCCccEEec-cCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLP-CLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLP-CgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
.+..|+||++.|..++.+..++ |+|.||..||.+||+.+.+||+||..|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3578999999999999999998 9999999999999999999999999874
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.4e-14 Score=116.29 Aligned_cols=50 Identities=38% Similarity=0.967 Sum_probs=46.5
Q ss_pred CCCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005292 654 NFEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 654 ~~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
..+..|+||++.|..+..+..|||+|.||..||.+||+.+.+||+||..|
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccc
Confidence 34678999999999999999999999999999999999999999999986
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=4.5e-14 Score=114.13 Aligned_cols=50 Identities=44% Similarity=1.089 Sum_probs=46.3
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
....|+||++.|..++.++.|||+|.||..||.+||..+.+||+||..|.
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 46789999999998888999999999999999999999999999999874
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.43 E-value=6.4e-14 Score=115.74 Aligned_cols=50 Identities=46% Similarity=1.123 Sum_probs=46.4
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
....|+||++.|..+..+..|+|+|.||..||.+||..+.+||+||..|.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 46789999999999888899999999999999999999999999999874
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.39 E-value=2.4e-13 Score=104.92 Aligned_cols=50 Identities=28% Similarity=0.676 Sum_probs=44.0
Q ss_pred CCCcccccCCCCCCC-CccEEeccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIG-DSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~G-d~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
.+..|+||++.|..+ +.+..++|+|.||..||.+||.....||+||..|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 367899999999654 45778899999999999999999999999999874
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.1e-13 Score=115.16 Aligned_cols=50 Identities=28% Similarity=0.681 Sum_probs=41.9
Q ss_pred CCCcccccCCCCCC-----------CCccEEec-cCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSI-----------GDSIRHLP-CLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~-----------Gd~VrvLP-CgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
.++.|+||++.|.. ++.++.++ |+|.||..||.+||..+.+||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 46778888888854 45566776 9999999999999999999999999863
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=6.4e-13 Score=106.23 Aligned_cols=50 Identities=30% Similarity=0.594 Sum_probs=43.7
Q ss_pred CCCcccccCCCCCCC----CccEEeccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIG----DSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~G----d~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
....|+||++.|... ..+..++|+|.||..||.+||..+..||+||..|+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 467899999998653 44578899999999999999999999999999874
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.32 E-value=5.7e-13 Score=117.30 Aligned_cols=49 Identities=31% Similarity=0.642 Sum_probs=40.8
Q ss_pred CCCcccccCCCCCCCC---------------ccEEeccCCccchhhHHHHH-----hcCCCCCccCCCC
Q 005292 655 FEEACAICLDNPSIGD---------------SIRHLPCLHKFHKDCIDPWL-----SRRPSCPVCKSSI 703 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd---------------~VrvLPCgHvFH~dCI~~WL-----k~k~SCPVCR~eI 703 (704)
.+..|+|||+.|..+. .+..++|+|+||..||.+|| ..+.+||+||..+
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 3578999999997653 34478999999999999999 4577999999875
No 11
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.30 E-value=1.4e-12 Score=116.76 Aligned_cols=49 Identities=31% Similarity=0.615 Sum_probs=43.0
Q ss_pred CCCcccccCCCCCCCC---------------ccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005292 655 FEEACAICLDNPSIGD---------------SIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd---------------~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
.++.|+||++.|.... .++.++|+|.||..||.+||..+.+||+||.++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 4788999999998541 367789999999999999999999999999875
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.29 E-value=5.7e-13 Score=107.52 Aligned_cols=50 Identities=32% Similarity=0.668 Sum_probs=43.7
Q ss_pred CCCcccccCCCCCC----CCccEEeccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSI----GDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~----Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
.+..|+||++.|.. +..+..++|||.||..||.+||..+.+||+||..+.
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 46789999999864 355678899999999999999999999999999874
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.26 E-value=1.1e-12 Score=103.52 Aligned_cols=49 Identities=31% Similarity=0.629 Sum_probs=42.9
Q ss_pred CCcccccCCCCCCC----CccEEeccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 656 EEACAICLDNPSIG----DSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLEeF~~G----d~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
+..|+||++.|... ..+..++|||.||..||.+|+..+..||+||..+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 56899999998643 45678899999999999999999999999999874
No 14
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.26 E-value=2.8e-12 Score=103.15 Aligned_cols=48 Identities=44% Similarity=1.067 Sum_probs=42.2
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
.+..|+||++.|.. .+..+||||.||..||.+|+..+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 36789999999864 3578899999999999999999999999998863
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=3.2e-12 Score=104.38 Aligned_cols=47 Identities=30% Similarity=0.552 Sum_probs=41.9
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
....|+||++.|... +.|+|+|.||..||.+||..+..||+||..|.
T Consensus 14 ~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 14 TVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 467899999998654 67899999999999999999999999999874
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.8e-12 Score=105.07 Aligned_cols=46 Identities=43% Similarity=1.034 Sum_probs=41.7
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
....|+||++.|.. ..+||+|.||..||.+||..+..||+||..|.
T Consensus 14 ~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred CCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 46789999999876 78999999999999999999999999998763
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=8.6e-12 Score=104.25 Aligned_cols=49 Identities=22% Similarity=0.563 Sum_probs=43.1
Q ss_pred CCCcccccCCCCCCCCc-cEEeccCCccchhhHHHHHhcC---CCCCccCCCC
Q 005292 655 FEEACAICLDNPSIGDS-IRHLPCLHKFHKDCIDPWLSRR---PSCPVCKSSI 703 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~-VrvLPCgHvFH~dCI~~WLk~k---~SCPVCR~eI 703 (704)
....|+||++.|...+. .+.|+|||.||..||..|+..+ ..||+||..+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKIT 66 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCB
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcc
Confidence 46789999999987664 6788999999999999999975 7999999875
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=9.6e-12 Score=101.82 Aligned_cols=47 Identities=28% Similarity=0.549 Sum_probs=41.1
Q ss_pred CCCcccccCCCCCCCCccEEe-ccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHL-PCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvL-PCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
....|+||++.|... +.+ +|+|.||..||..||..+..||+||..|.
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 14 PYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp GGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 467899999998763 455 99999999999999999999999999874
No 19
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.19 E-value=5e-12 Score=115.94 Aligned_cols=46 Identities=35% Similarity=0.860 Sum_probs=41.2
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
+..|+||++.|..+ ++|||||.||..||..|+..+.+||+||.+|.
T Consensus 53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45799999999754 68899999999999999999999999999873
No 20
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=9.6e-12 Score=106.34 Aligned_cols=48 Identities=25% Similarity=0.711 Sum_probs=42.0
Q ss_pred CCCcccccCCCCCCCCccEEeccC-----CccchhhHHHHHhcC--CCCCccCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCL-----HKFHKDCIDPWLSRR--PSCPVCKSSI 703 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCg-----HvFH~dCI~~WLk~k--~SCPVCR~eI 703 (704)
.+..|.||+++|..++.+ ++||. |.||..||.+||..+ .+||+||..+
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~ 68 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred CCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCee
Confidence 467899999999887776 68996 999999999999865 5999999876
No 21
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.17 E-value=3.2e-12 Score=116.89 Aligned_cols=50 Identities=30% Similarity=0.624 Sum_probs=1.5
Q ss_pred CCCCcccccCCCCCCC-------------C--ccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005292 654 NFEEACAICLDNPSIG-------------D--SIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 654 ~~eetCsICLEeF~~G-------------d--~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
..++.|+||++.|... + .+..++|+|.||..||.+||..+.+||+||.++
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CCC--------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 3468999999999752 2 234458999999999999999999999999874
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.5e-11 Score=102.61 Aligned_cols=47 Identities=21% Similarity=0.441 Sum_probs=41.4
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
....|+||++.|... .+++|||.||..||.+||.....||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 356899999999654 57899999999999999999999999998863
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.1e-11 Score=99.07 Aligned_cols=47 Identities=34% Similarity=0.609 Sum_probs=40.5
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHh---cCCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLS---RRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk---~k~SCPVCR~eIS 704 (704)
....|+||++.|... ..|+|||.||..||..|+. ....||+||..|.
T Consensus 19 ~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 19 EEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred cCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 467899999998753 6779999999999999997 4668999999874
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.15 E-value=2.7e-11 Score=100.04 Aligned_cols=46 Identities=28% Similarity=0.587 Sum_probs=40.3
Q ss_pred CCCcccccCCCCCCCCccEEec-cCCccchhhHHHHHhcC--CCCCccCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLP-CLHKFHKDCIDPWLSRR--PSCPVCKSSI 703 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLP-CgHvFH~dCI~~WLk~k--~SCPVCR~eI 703 (704)
.+..|+||++.|... ++|+ |||.||..||..||..+ ..||+||..+
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 14 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp GGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 467899999999865 6799 99999999999999865 6999999874
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.14 E-value=4.1e-11 Score=98.86 Aligned_cols=47 Identities=30% Similarity=0.629 Sum_probs=41.4
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc------CCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR------RPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~------k~SCPVCR~eIS 704 (704)
....|+||++.|... ..++|+|.||..||..|+.. ...||+||..+.
T Consensus 18 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 18 EEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred cCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 467899999998765 57899999999999999987 779999998873
No 26
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=4.8e-11 Score=98.44 Aligned_cols=47 Identities=34% Similarity=0.691 Sum_probs=41.0
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc------CCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR------RPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~------k~SCPVCR~eIS 704 (704)
....|+||++.|... ..|+|+|.||..||..|+.. ...||+||..+.
T Consensus 18 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 18 EEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 467899999999764 56799999999999999987 789999998864
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=3.1e-11 Score=97.07 Aligned_cols=47 Identities=28% Similarity=0.596 Sum_probs=40.2
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHh-cCCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLS-RRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk-~k~SCPVCR~eIS 704 (704)
....|+||++.|... ..++|||.||..||.+|+. ....||+||..|+
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred cCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 357899999998765 3479999999999999995 5779999999874
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.08 E-value=4.9e-11 Score=98.41 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=41.3
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc-CCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR-RPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~-k~SCPVCR~eIS 704 (704)
.+..|+||++.|... ++++|||.||..||.+||.. +.+||+||..+.
T Consensus 7 ~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 7 EYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred ccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 367899999998765 67899999999999999987 789999998863
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.08 E-value=4e-11 Score=104.59 Aligned_cols=46 Identities=26% Similarity=0.676 Sum_probs=40.1
Q ss_pred CCcccccCCCCCCCCccEE-eccCCccchhhHHHHHhcC-CCCCccCCCCC
Q 005292 656 EEACAICLDNPSIGDSIRH-LPCLHKFHKDCIDPWLSRR-PSCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLEeF~~Gd~Vrv-LPCgHvFH~dCI~~WLk~k-~SCPVCR~eIS 704 (704)
+..|+||++.|... +. ++|||.||..||.+||... ..||+||..++
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 56799999999753 45 8999999999999999987 79999999864
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.07 E-value=3.1e-11 Score=106.84 Aligned_cols=50 Identities=30% Similarity=0.594 Sum_probs=43.6
Q ss_pred CCCcccccCCCCCCC----CccEEeccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIG----DSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~G----d~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
.+..|+||++.|... ..++.++|||.||..||.+||+.+.+||+||..+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 357899999998653 45688999999999999999999999999998763
No 31
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.05 E-value=6.5e-11 Score=102.16 Aligned_cols=46 Identities=30% Similarity=0.728 Sum_probs=40.3
Q ss_pred CCcccccCCCCCCCCccEEe-ccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHL-PCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvL-PCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
...|+||++.|... +.+ +|||.||..||..|+..+..||+||..+.
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 22 LLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 46799999999753 455 89999999999999999999999998764
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.5e-10 Score=92.13 Aligned_cols=42 Identities=33% Similarity=0.604 Sum_probs=36.9
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHh---cCCCCCcc
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLS---RRPSCPVC 699 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk---~k~SCPVC 699 (704)
.+..|+||++.|... +.|+|||.||..||.+||. ....||+|
T Consensus 19 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 467899999999864 6789999999999999998 46689998
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.04 E-value=2.7e-11 Score=99.53 Aligned_cols=47 Identities=34% Similarity=0.630 Sum_probs=40.7
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc-------CCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR-------RPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~-------k~SCPVCR~eIS 704 (704)
.+..|+||++.|... +.|+|||.||..||..|+.. ...||+||..+.
T Consensus 11 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 11 EEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 467899999999764 45899999999999999986 678999998873
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.03 E-value=8.7e-11 Score=105.36 Aligned_cols=46 Identities=26% Similarity=0.534 Sum_probs=39.8
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcC-CCCCccCCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRR-PSCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k-~SCPVCR~eIS 704 (704)
...|+||++.|... +.+||||.||..||..|+... ..||+||..++
T Consensus 52 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 46799999999854 678999999999999999854 49999998873
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.03 E-value=1e-10 Score=102.62 Aligned_cols=47 Identities=28% Similarity=0.639 Sum_probs=40.8
Q ss_pred CCCcccccCCCCCCCCccEEe-ccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHL-PCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvL-PCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
.+..|+||++.|... +.+ +|||.||..||..|+.....||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp GGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 367899999998753 455 99999999999999999999999998763
No 36
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=1.6e-10 Score=100.82 Aligned_cols=46 Identities=35% Similarity=0.662 Sum_probs=39.2
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCC---CCCccCCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRP---SCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~---SCPVCR~eIS 704 (704)
...|+||++.|... ..++|||.||..||..|+..+. .||+||..++
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 45799999998755 4579999999999999998654 8999999874
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.99 E-value=1.2e-10 Score=103.15 Aligned_cols=52 Identities=31% Similarity=0.649 Sum_probs=44.3
Q ss_pred CCCCCcccccCCCCCC----CCccEEeccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 653 DNFEEACAICLDNPSI----GDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 653 d~~eetCsICLEeF~~----Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
......|+||++.|.. +..++.++|||.||..||.+||..+.+||+||..|.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 3457789999999864 334578899999999999999999999999999874
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2e-10 Score=89.23 Aligned_cols=42 Identities=38% Similarity=0.910 Sum_probs=36.2
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHH---hcCCCCCcc
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWL---SRRPSCPVC 699 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WL---k~k~SCPVC 699 (704)
....|+||++.|... +.|+|+|.||..||.+|+ .....||+|
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 467899999999865 568999999999999995 457899998
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.98 E-value=1.8e-10 Score=107.97 Aligned_cols=46 Identities=37% Similarity=0.811 Sum_probs=39.5
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc-CCCCCccCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR-RPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~-k~SCPVCR~eI 703 (704)
...|+||++.|.. .+..++|||.||..||..||.. +..||+||..|
T Consensus 54 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 54 ELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 4589999999885 3444499999999999999997 78999999886
No 40
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.97 E-value=2.2e-10 Score=97.21 Aligned_cols=46 Identities=28% Similarity=0.587 Sum_probs=40.0
Q ss_pred CCCcccccCCCCCCCCccEEec-cCCccchhhHHHHHhcC--CCCCccCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLP-CLHKFHKDCIDPWLSRR--PSCPVCKSSI 703 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLP-CgHvFH~dCI~~WLk~k--~SCPVCR~eI 703 (704)
.+..|+||++.|... +.|| |||.||..||..|+... ..||+||..+
T Consensus 12 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 367899999999865 6889 99999999999999753 6999999885
No 41
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=2.1e-10 Score=91.91 Aligned_cols=49 Identities=20% Similarity=0.531 Sum_probs=39.8
Q ss_pred CCcccccCC-CCCCCCc-cEEeccCCccchhhHHHHHhc-CCCCCccCCCCC
Q 005292 656 EEACAICLD-NPSIGDS-IRHLPCLHKFHKDCIDPWLSR-RPSCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLE-eF~~Gd~-VrvLPCgHvFH~dCI~~WLk~-k~SCPVCR~eIS 704 (704)
+..|+||++ .|..... +..++|||.||..||.+|+.. ...||+||..+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 567999999 6765543 346799999999999999765 568999999874
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.94 E-value=2.7e-10 Score=101.72 Aligned_cols=47 Identities=30% Similarity=0.546 Sum_probs=40.8
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCC-CCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRP-SCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~-SCPVCR~eIS 704 (704)
....|+||++.|... +.++|||.||..||.+||.... .||+||..|+
T Consensus 17 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 17 SKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 457899999998765 6789999999999999998755 9999999874
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.93 E-value=3.4e-10 Score=106.16 Aligned_cols=46 Identities=24% Similarity=0.589 Sum_probs=39.8
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCC-CCCccCCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRP-SCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~-SCPVCR~eIS 704 (704)
...|+||++.|... ++|||||.||..||..||.... .||+||..|.
T Consensus 78 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 46799999998765 5689999999999999999654 8999999874
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.90 E-value=2.2e-10 Score=101.36 Aligned_cols=45 Identities=29% Similarity=0.732 Sum_probs=39.9
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc-CCCCCccCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR-RPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~-k~SCPVCR~eI 703 (704)
+..|+||++.|... +.|+|||.||..||..|+.. ...||+||..+
T Consensus 15 ~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 15 ECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp HHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 56799999998754 67899999999999999976 77899999876
No 45
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=6.6e-10 Score=94.38 Aligned_cols=46 Identities=26% Similarity=0.629 Sum_probs=39.7
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcC--CCCCccCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRR--PSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k--~SCPVCR~eI 703 (704)
...|+||.+.|..+... ..|+|.||..||.+||+.+ .+||+||.++
T Consensus 15 i~~C~IC~~~i~~g~~C--~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62 (74)
T ss_dssp SCBCSSSCCBCSSSEEC--SSSCCEECHHHHHHHSTTCSSCCCTTTCSCC
T ss_pred CCcCcchhhHcccCCcc--CCCCchhhHHHHHHHHHhcCCCCCCCCcCcC
Confidence 57899999999876433 2799999999999999977 8999999875
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.87 E-value=8e-10 Score=97.88 Aligned_cols=46 Identities=26% Similarity=0.477 Sum_probs=40.3
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc-CCCCCccCCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR-RPSCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~-k~SCPVCR~eIS 704 (704)
+..|+||++.|... +.++|||.||..||.+||.. ...||+||..++
T Consensus 23 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 46799999998754 56899999999999999997 789999999864
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.84 E-value=1.3e-09 Score=93.10 Aligned_cols=47 Identities=17% Similarity=0.053 Sum_probs=42.5
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
.+..|+||++-|... ++++|||.|+..||.+||..+.+||+||..++
T Consensus 13 ~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred hheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 367899999999876 78899999999999999999999999998864
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.80 E-value=1.8e-09 Score=95.33 Aligned_cols=47 Identities=17% Similarity=0.071 Sum_probs=42.5
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
.+..|+||++-|.+. ++++|||.|+..||.+||..+.+||+||.+++
T Consensus 28 ~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 28 DEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp TTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred HhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 367899999999876 78899999999999999998899999998874
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=8.8e-10 Score=87.01 Aligned_cols=45 Identities=24% Similarity=0.632 Sum_probs=38.4
Q ss_pred CCCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 654 NFEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 654 ~~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
.....|+||++.|... +.|||||.||..||..| ...||+||..+.
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 3467899999999865 67899999999999885 678999999874
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.79 E-value=2.5e-09 Score=86.92 Aligned_cols=47 Identities=30% Similarity=0.562 Sum_probs=40.0
Q ss_pred CCCcccccCCCCCCCCccEEe--ccCCc-cchhhHHHHHhcCCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHL--PCLHK-FHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvL--PCgHv-FH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
.+..|.||++.+... ..+ ||||. |+..|+..|+..+..||+||.+|.
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 356899999987644 444 99999 899999999999999999999874
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.77 E-value=3.9e-09 Score=92.87 Aligned_cols=47 Identities=19% Similarity=0.047 Sum_probs=42.4
Q ss_pred CCCcccccCCCCCCCCccEEeccC-CccchhhHHHHHhcCCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCL-HKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCg-HvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
.+..|+||++-|.+. ++++|| |.|+..||.+||..+.+||+||.+++
T Consensus 21 ~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp TTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred HhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 367899999999876 688999 99999999999998899999998874
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.76 E-value=2.9e-09 Score=114.39 Aligned_cols=46 Identities=28% Similarity=0.792 Sum_probs=40.7
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHh-cCCCCCccCCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLS-RRPSCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk-~k~SCPVCR~eIS 704 (704)
...|+||++.+.. .+.+||||.||..||..|+. ....||+||..|.
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 4689999999854 47899999999999999999 7889999999874
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=1.8e-09 Score=96.19 Aligned_cols=43 Identities=26% Similarity=0.594 Sum_probs=38.0
Q ss_pred CCcccccCCCCCCCCccEEe-ccCCccchhhHHHHHhcCCCCCccCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHL-PCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvL-PCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
...|+||++.|... +.+ +|||.||..||..|+. ..||+||..+
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~ 65 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPA 65 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBC
T ss_pred CCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcC
Confidence 56799999999755 566 9999999999999998 8899999876
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.73 E-value=4.2e-09 Score=103.72 Aligned_cols=47 Identities=19% Similarity=0.121 Sum_probs=40.9
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc-CCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR-RPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~-k~SCPVCR~eIS 704 (704)
....|+||++-|..+ +++||||.||..||.+||.. ..+||+||.+++
T Consensus 207 ~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 207 DYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp STTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred cccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 367899999999876 68899999999999999986 445999999874
No 55
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.73 E-value=6.2e-09 Score=88.37 Aligned_cols=50 Identities=20% Similarity=0.539 Sum_probs=39.6
Q ss_pred CCCCcccccCCCCCCCCccEEec--cCCccchhhHHHHHh-cCCCCCccCCCCC
Q 005292 654 NFEEACAICLDNPSIGDSIRHLP--CLHKFHKDCIDPWLS-RRPSCPVCKSSIT 704 (704)
Q Consensus 654 ~~eetCsICLEeF~~Gd~VrvLP--CgHvFH~dCI~~WLk-~k~SCPVCR~eIS 704 (704)
..+.+|+||++.|...+. ..+| |||.||..||..|+. ....||+||..+.
T Consensus 9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred ccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 346789999998865433 3444 999999999999985 4678999998763
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.70 E-value=2.3e-09 Score=99.68 Aligned_cols=46 Identities=22% Similarity=0.470 Sum_probs=39.9
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCC-CCCccCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRP-SCPVCKSSI 703 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~-SCPVCR~eI 703 (704)
....|+||++.|... +.++|||.||..||.+|+.... .||+||.++
T Consensus 30 ~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 467899999999866 5689999999999999998654 899999864
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.69 E-value=6e-09 Score=84.44 Aligned_cols=46 Identities=26% Similarity=0.546 Sum_probs=39.3
Q ss_pred CCcccccCCCCCCCCccEEe--ccCCc-cchhhHHHHHhcCCCCCccCCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHL--PCLHK-FHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvL--PCgHv-FH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
...|.||++.+... ..+ ||||. |+..|+..|......||+||.+|.
T Consensus 7 ~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 56899999986543 344 99998 999999999998899999999874
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.65 E-value=6.5e-09 Score=86.32 Aligned_cols=42 Identities=38% Similarity=0.833 Sum_probs=36.7
Q ss_pred CCcccccCCCCCCCCccEEeccCCc-cchhhHHHHHhcCCCCCccCCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHK-FHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHv-FH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
+..|.||++.+.. ...|||||. ||..||..| ..||+||..|.
T Consensus 24 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred CCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 4579999998765 368899999 999999999 89999999874
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.61 E-value=1.3e-08 Score=95.55 Aligned_cols=47 Identities=30% Similarity=0.549 Sum_probs=40.6
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcC-CCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRR-PSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k-~SCPVCR~eIS 704 (704)
....|+||++.|... +.++|||.||..||.+||... ..||+||..|+
T Consensus 17 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 17 SKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 467899999998765 568999999999999999864 49999998874
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.59 E-value=1.8e-08 Score=87.34 Aligned_cols=45 Identities=22% Similarity=0.442 Sum_probs=38.2
Q ss_pred CCCcccccCCCCCCCCccEEec-cCCccchhhHHHHHhcC------CCCCc--cCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLP-CLHKFHKDCIDPWLSRR------PSCPV--CKSS 702 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLP-CgHvFH~dCI~~WLk~k------~SCPV--CR~e 702 (704)
.+..|+||++.|... ++++ |||.|+..||.+||... .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 367899999999865 6786 99999999999999864 58999 9854
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.52 E-value=1.5e-08 Score=107.78 Aligned_cols=51 Identities=29% Similarity=0.735 Sum_probs=39.6
Q ss_pred CCCCcccccCCCCCCCCcc----E-EeccCCccchhhHHHHHhcC-----------CCCCccCCCCC
Q 005292 654 NFEEACAICLDNPSIGDSI----R-HLPCLHKFHKDCIDPWLSRR-----------PSCPVCKSSIT 704 (704)
Q Consensus 654 ~~eetCsICLEeF~~Gd~V----r-vLPCgHvFH~dCI~~WLk~k-----------~SCPVCR~eIS 704 (704)
....+|+||++.+..+..+ . .++|+|.||..||.+||+.. ..||+||.+|+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3467899999999873322 2 23699999999999999742 46999999874
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=4.9e-08 Score=80.94 Aligned_cols=42 Identities=36% Similarity=0.770 Sum_probs=34.8
Q ss_pred CCcccccCCCCCCCCccEEeccCCc-cchhhHHHHHhcCCCCCccCCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHK-FHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHv-FH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
...|+||++.+... ..+||||. ||..|+.. ...||+||..|.
T Consensus 25 ~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~ 67 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVIT 67 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCC
T ss_pred CCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceec
Confidence 34699999987653 57899999 99999965 378999998874
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.45 E-value=7e-08 Score=94.07 Aligned_cols=47 Identities=19% Similarity=0.104 Sum_probs=40.6
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcC-CCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRR-PSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k-~SCPVCR~eIS 704 (704)
....|+||++-|..+ +++||||.|+..||..||... .+||+|+.+++
T Consensus 105 ~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 105 DYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred HhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 367899999999865 688999999999999999864 47999998874
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.44 E-value=7.9e-08 Score=78.14 Aligned_cols=47 Identities=23% Similarity=0.653 Sum_probs=37.4
Q ss_pred CCCCcccccCCCCCCCCccEEeccC--C---ccchhhHHHHHhc--CCCCCccCCCC
Q 005292 654 NFEEACAICLDNPSIGDSIRHLPCL--H---KFHKDCIDPWLSR--RPSCPVCKSSI 703 (704)
Q Consensus 654 ~~eetCsICLEeF~~Gd~VrvLPCg--H---vFH~dCI~~WLk~--k~SCPVCR~eI 703 (704)
.....|.||+++. ++.+ ++||. | .||..||.+||.. +.+||+|+..+
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 3467899999973 3344 68954 4 9999999999974 67899999876
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.35 E-value=8.3e-08 Score=82.45 Aligned_cols=47 Identities=21% Similarity=0.562 Sum_probs=38.4
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc--------CCCCCc--cCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR--------RPSCPV--CKSS 702 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~--------k~SCPV--CR~e 702 (704)
..+|+||++.|...+.+..++|+|.||..||..|+.. ...||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 5689999999876655544579999999999999973 237999 9986
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=3.3e-07 Score=75.55 Aligned_cols=43 Identities=23% Similarity=0.685 Sum_probs=36.2
Q ss_pred CCCcccccCCCCCCCCccEEeccCCc-cchhhHHHHHhcCCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHK-FHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHv-FH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
....|.||++.+.. +..|||+|. |+..|+.. ...||+||..|.
T Consensus 14 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~ 57 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ 57 (68)
T ss_dssp CSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCC
T ss_pred CCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchh
Confidence 36789999998654 478899999 99999984 578999999874
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.31 E-value=1.3e-07 Score=80.10 Aligned_cols=42 Identities=29% Similarity=0.708 Sum_probs=35.7
Q ss_pred CCcccccCCCCCCCCccEEeccCCc-cchhhHHHHHhcCCCCCccCCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHK-FHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHv-FH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
+..|.||++.+.. +..+||||. |+..|+..| ..||+||..|.
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 4579999998654 478899999 999999988 39999999874
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.27 E-value=2.8e-07 Score=74.97 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=39.8
Q ss_pred CcccccCCCCCCCCccEEe-ccCCccchhhHHHHHhcCCCCCccCCCCC
Q 005292 657 EACAICLDNPSIGDSIRHL-PCLHKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 657 etCsICLEeF~~Gd~VrvL-PCgHvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
..|+||++-|.+. +++ +|||+|.+.||.+||..+.+||+++.+|+
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 5799999999855 566 89999999999999998888999998874
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.23 E-value=2.4e-07 Score=98.01 Aligned_cols=43 Identities=28% Similarity=0.763 Sum_probs=37.4
Q ss_pred CCCcccccCCCCCCCCccEEeccCCc-cchhhHHHHHhcCCCCCccCCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHK-FHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHv-FH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
.+..|+||++.+... ..|||||. ||..||..| ..||+||..|.
T Consensus 294 ~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 357899999998653 78899999 999999999 78999999874
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.11 E-value=7.6e-07 Score=91.68 Aligned_cols=47 Identities=26% Similarity=0.526 Sum_probs=39.2
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcC--CCCCc--cCCCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRR--PSCPV--CKSSI 703 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k--~SCPV--CR~eI 703 (704)
.+..|+||++-|..+ |+.+.|||.|++.||..|+... ..||+ |+..+
T Consensus 180 ~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l 230 (267)
T 3htk_C 180 IELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVV 230 (267)
T ss_dssp CCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEE
T ss_pred eeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcC
Confidence 467899999999755 5445899999999999999864 57999 99865
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.79 E-value=1e-05 Score=72.71 Aligned_cols=45 Identities=27% Similarity=0.462 Sum_probs=36.8
Q ss_pred cccccCCCCCCCCccEEeccCCccchhhHHHHHh-cCCCCCccCCCCC
Q 005292 658 ACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLS-RRPSCPVCKSSIT 704 (704)
Q Consensus 658 tCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk-~k~SCPVCR~eIS 704 (704)
-|.+|--.+. ...+.+||+|+||++|+..|.+ ..++||.|+.+|.
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 3777765544 4578999999999999999986 4789999999874
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.30 E-value=6.8e-05 Score=75.65 Aligned_cols=46 Identities=26% Similarity=0.629 Sum_probs=37.4
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcC--CCCCccCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRR--PSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k--~SCPVCR~eI 703 (704)
-..|.||.+-...|... -.|+|.||..|+.+|++.+ ..||.|+...
T Consensus 180 i~~C~iC~~iv~~g~~C--~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp CCBCTTTCSBCSSCEEC--SSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCcCcchhhHHhCCccc--CccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 67899999998877322 2399999999999999864 4999998753
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.20 E-value=0.056 Score=46.42 Aligned_cols=35 Identities=14% Similarity=0.484 Sum_probs=27.0
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHH-HH
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDP-WL 690 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~-WL 690 (704)
+..|.||++.|...-...-+.|+|.|+..|+.. |.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 467999998764433344489999999999998 53
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.31 E-value=0.06 Score=48.27 Aligned_cols=43 Identities=28% Similarity=0.672 Sum_probs=36.3
Q ss_pred CCcccccCCCCCCCCccEEecc-CCccchhhHHHHHhcCCCCCccCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPC-LHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPC-gHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
...|-.|+..+. + .+.| .|.+|..|+.--|+....||+|+.+|
T Consensus 28 ~~nCKsCWf~~k-~----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pL 71 (99)
T 2ko5_A 28 PQFCKSCWFENK-G----LVECNNHYLCLNCLTLLLSVSNRCPICKMPL 71 (99)
T ss_dssp CCCCCSSCSCCS-S----EEECSSCEEEHHHHHHTCSSSSEETTTTEEC
T ss_pred cccChhhccccC-C----eeeecchhhHHHHHHHHHhhccCCcccCCcC
Confidence 567999998765 2 5566 59999999999999999999999875
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=85.53 E-value=0.41 Score=39.63 Aligned_cols=44 Identities=27% Similarity=0.568 Sum_probs=32.4
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc----CCCCCccCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR----RPSCPVCKSS 702 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~----k~SCPVCR~e 702 (704)
...|.||.+. ++-+.--.|...||..|+.+.|.. .-.||.|...
T Consensus 12 ~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 5679999853 433333349999999999999874 3479999764
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=78.67 E-value=0.53 Score=37.83 Aligned_cols=48 Identities=19% Similarity=0.419 Sum_probs=32.6
Q ss_pred CCCCcccccCCCCCCCCcc-EEeccCCccchhhHHHHHh-----cCCCCCccCC
Q 005292 654 NFEEACAICLDNPSIGDSI-RHLPCLHKFHKDCIDPWLS-----RRPSCPVCKS 701 (704)
Q Consensus 654 ~~eetCsICLEeF~~Gd~V-rvLPCgHvFH~dCI~~WLk-----~k~SCPVCR~ 701 (704)
.....|+||...+..+... .--.|...||..|+.--.. ....||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 3456799999988644322 2224899999999764322 3578999964
No 77
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=76.35 E-value=1.4 Score=52.60 Aligned_cols=46 Identities=13% Similarity=0.082 Sum_probs=40.5
Q ss_pred CCcccccCCCCCCCCccEEeccC-CccchhhHHHHHhcCCCCCccCCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCL-HKFHKDCIDPWLSRRPSCPVCKSSIT 704 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCg-HvFH~dCI~~WLk~k~SCPVCR~eIS 704 (704)
+..|+|-++-+.++ +++|.| +.|-..+|.+||..+.+||+=|.+|+
T Consensus 891 ~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 891 EFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp GGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred HhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 56799999988776 789997 68999999999999999999988774
No 78
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=72.37 E-value=2.1 Score=37.85 Aligned_cols=34 Identities=21% Similarity=0.454 Sum_probs=23.8
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHH
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPW 689 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~W 689 (704)
.++.|.||- .|..++..-.=-|+-+||..|+.+-
T Consensus 14 ~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCccc-cccccceeccccccccccHhhcccc
Confidence 367899985 5555532222228999999999995
No 79
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=69.16 E-value=1.5 Score=38.61 Aligned_cols=46 Identities=26% Similarity=0.543 Sum_probs=30.6
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc----CCCCCccC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR----RPSCPVCK 700 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~----k~SCPVCR 700 (704)
.+..|.||.+.-...+-+.--.|...||..||..++.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 46789999876322222444459999999999887752 33466553
No 80
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=67.47 E-value=0.67 Score=38.37 Aligned_cols=46 Identities=20% Similarity=0.383 Sum_probs=30.9
Q ss_pred CCcccccCCCCCCCCccEE-eccCCccchhhHHHHHh----cCCCCCccCCC
Q 005292 656 EEACAICLDNPSIGDSIRH-LPCLHKFHKDCIDPWLS----RRPSCPVCKSS 702 (704)
Q Consensus 656 eetCsICLEeF~~Gd~Vrv-LPCgHvFH~dCI~~WLk----~k~SCPVCR~e 702 (704)
...|.||..... ++..+. =.|.-.||..|+..-+. ..-.||.|+..
T Consensus 18 ~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 18 IWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp EECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 456999987653 322222 24899999999986554 24579999653
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=67.23 E-value=1.9 Score=34.72 Aligned_cols=44 Identities=30% Similarity=0.796 Sum_probs=31.1
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc----CCCCCccCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR----RPSCPVCKS 701 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~----k~SCPVCR~ 701 (704)
.+..|.||... ++-+.--.|.-.||..|+.+-|.. .-.||.|..
T Consensus 10 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 46789999873 332322248899999999986643 346999964
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=63.27 E-value=2.8 Score=32.16 Aligned_cols=45 Identities=27% Similarity=0.581 Sum_probs=29.8
Q ss_pred cccccCCCCCCCCccEEeccCCccchhhHHHHHhc----CCCCCccCCC
Q 005292 658 ACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR----RPSCPVCKSS 702 (704)
Q Consensus 658 tCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~----k~SCPVCR~e 702 (704)
.|.||...-..++-+.--.|.-.||..|+.+=|.. .-.||.|+..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 48899875433333333349999999999764443 3359999753
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=61.68 E-value=2 Score=34.68 Aligned_cols=46 Identities=28% Similarity=0.699 Sum_probs=32.1
Q ss_pred CCCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc----CCCCCccCCC
Q 005292 654 NFEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR----RPSCPVCKSS 702 (704)
Q Consensus 654 ~~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~----k~SCPVCR~e 702 (704)
..+..|.||... ++-+.--.|.-.||..|+.+-|.. .-.||.|...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 346779999863 333333348999999999976653 3369999764
No 84
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.25 E-value=5.9 Score=33.21 Aligned_cols=46 Identities=22% Similarity=0.448 Sum_probs=29.3
Q ss_pred CCcccccCCCCCCCCc-cEEeccCCccchhhHHHHHh-----cCCCCCccCCC
Q 005292 656 EEACAICLDNPSIGDS-IRHLPCLHKFHKDCIDPWLS-----RRPSCPVCKSS 702 (704)
Q Consensus 656 eetCsICLEeF~~Gd~-VrvLPCgHvFH~dCI~~WLk-----~k~SCPVCR~e 702 (704)
..-| ||...+..+.. |..-.|.-.||..|+.--.. ....||.|+..
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 3445 99988753322 22224899999999852211 45689999754
No 85
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=60.48 E-value=6.9 Score=36.99 Aligned_cols=46 Identities=30% Similarity=0.615 Sum_probs=33.0
Q ss_pred CCCCCcccccCCCCCCCCccEEeccCCccchhhHHHHHh-----------cCCCCCccCC
Q 005292 653 DNFEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLS-----------RRPSCPVCKS 701 (704)
Q Consensus 653 d~~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk-----------~k~SCPVCR~ 701 (704)
+..++.|.||.+. |+-+..=.|--.||..||.+=|. ..-.||+|+.
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4457889999974 44333335999999999997663 2346999974
No 86
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=57.84 E-value=12 Score=28.99 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=29.0
Q ss_pred cccccCCCCCCCCccEEe--ccCCccchhhHHHH----HhcCCCCCccC
Q 005292 658 ACAICLDNPSIGDSIRHL--PCLHKFHKDCIDPW----LSRRPSCPVCK 700 (704)
Q Consensus 658 tCsICLEeF~~Gd~VrvL--PCgHvFH~dCI~~W----Lk~k~SCPVCR 700 (704)
.|.||...+..+...+.- .|.-.||..|+.-- ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 588999888654433222 48889999996421 13678899995
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.28 E-value=1.3 Score=34.95 Aligned_cols=44 Identities=32% Similarity=0.767 Sum_probs=31.0
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc----CCCCCccCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR----RPSCPVCKS 701 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~----k~SCPVCR~ 701 (704)
.+..|.||... ++-+.--.|.-.||..|+.+=|.. .-.||.|..
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 46779999974 433333359999999999976653 335999864
No 88
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=55.52 E-value=2.3 Score=37.34 Aligned_cols=43 Identities=26% Similarity=0.333 Sum_probs=28.8
Q ss_pred cccccCCCCCCCCccEEeccCCccchhhHHHHHh---cCCCCCccCC
Q 005292 658 ACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLS---RRPSCPVCKS 701 (704)
Q Consensus 658 tCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk---~k~SCPVCR~ 701 (704)
.| ||-.....+.-|..=.|.-.||..|+..=+. ....||.|+.
T Consensus 30 rC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 30 RC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred Ee-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 46 8987765553333334899999999875332 2457999974
No 89
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=53.11 E-value=7.5 Score=32.90 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=27.3
Q ss_pred eeecCCCCCcccccCCCCCCCCccEEe-ccCCccchhhHHHH
Q 005292 649 TVQTDNFEEACAICLDNPSIGDSIRHL-PCLHKFHKDCIDPW 689 (704)
Q Consensus 649 ti~~d~~eetCsICLEeF~~Gd~VrvL-PCgHvFH~dCI~~W 689 (704)
.+..+.....|.+|...|..-..-..- .||.+|+..|....
T Consensus 12 ~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 12 AWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp ---CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 344555567899999999754322222 49999999997654
No 90
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=50.23 E-value=2.8 Score=33.38 Aligned_cols=44 Identities=32% Similarity=0.767 Sum_probs=30.7
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc----CCCCCccCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR----RPSCPVCKS 701 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~----k~SCPVCR~ 701 (704)
.+..|.||... ++-+.--.|.-.||..|+.+=|.. .-.||.|..
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 36789999974 433333359999999999976543 336998853
No 91
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=49.97 E-value=14 Score=32.84 Aligned_cols=32 Identities=22% Similarity=0.489 Sum_probs=21.9
Q ss_pred CCcccccCCCC------CCCCccEEeccCCccchhhHH
Q 005292 656 EEACAICLDNP------SIGDSIRHLPCLHKFHKDCID 687 (704)
Q Consensus 656 eetCsICLEeF------~~Gd~VrvLPCgHvFH~dCI~ 687 (704)
...|.+|+..= ..++-+.--.|+..||..||.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 45799999752 122333334599999999995
No 92
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=48.97 E-value=2.8 Score=34.18 Aligned_cols=44 Identities=34% Similarity=0.708 Sum_probs=30.8
Q ss_pred CCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc----CCCCCccCC
Q 005292 655 FEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR----RPSCPVCKS 701 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~----k~SCPVCR~ 701 (704)
.+..|.||... ++-+.--.|.-.||..|+.+-|.. .-.||.|..
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 46789999964 433333349999999999876543 336999953
No 93
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=47.83 E-value=7.3 Score=34.27 Aligned_cols=42 Identities=29% Similarity=0.661 Sum_probs=26.7
Q ss_pred CcccccCCCCCCCCccEEec--cC-CccchhhHHHHHhc----CCCCCccCCC
Q 005292 657 EACAICLDNPSIGDSIRHLP--CL-HKFHKDCIDPWLSR----RPSCPVCKSS 702 (704)
Q Consensus 657 etCsICLEeF~~Gd~VrvLP--Cg-HvFH~dCI~~WLk~----k~SCPVCR~e 702 (704)
.-| ||..... ++-|..=. |. ..||..||. |.. +-.||.|+..
T Consensus 37 ~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 37 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp BCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred cEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 345 9988643 43222223 55 689999997 443 4579999764
No 94
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=46.30 E-value=17 Score=30.82 Aligned_cols=40 Identities=23% Similarity=0.171 Sum_probs=28.5
Q ss_pred eecCCCCCcccccCCCCCCCCccEEe-ccCCccchhhHHHH
Q 005292 650 VQTDNFEEACAICLDNPSIGDSIRHL-PCLHKFHKDCIDPW 689 (704)
Q Consensus 650 i~~d~~eetCsICLEeF~~Gd~VrvL-PCgHvFH~dCI~~W 689 (704)
+..+.....|.+|...|..-..-..- .||++|+..|....
T Consensus 15 W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 15 WQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred cccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 34455567899999999865432222 49999999997654
No 95
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=45.72 E-value=7 Score=34.28 Aligned_cols=45 Identities=31% Similarity=0.631 Sum_probs=31.9
Q ss_pred CCCCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc----CCCCCccCC
Q 005292 654 NFEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR----RPSCPVCKS 701 (704)
Q Consensus 654 ~~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~----k~SCPVCR~ 701 (704)
..+..|.||... ++-+..-.|--.||..|+.+=|.. .-.||.|..
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 346789999964 443333348999999999886653 336999974
No 96
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=43.76 E-value=4.4 Score=33.49 Aligned_cols=45 Identities=18% Similarity=0.342 Sum_probs=28.9
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHH---hcCCCCCccCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWL---SRRPSCPVCKS 701 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WL---k~k~SCPVCR~ 701 (704)
...| ||...+..+.-|.--.|.-.||..|+.--- .....||.|+.
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 4557 998876522122222489999999976322 23568999975
No 97
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=43.63 E-value=14 Score=39.95 Aligned_cols=45 Identities=24% Similarity=0.407 Sum_probs=31.0
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc-----CCCCCccCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR-----RPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~-----k~SCPVCR~eI 703 (704)
...|+|-+..+.. .++-..|.|.-|.+ +..||.. .-.||+|.+.+
T Consensus 249 SL~CPlS~~ri~~--PvRg~~C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 249 SLQCPISYTRMKY--PSKSINCKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp ESBCTTTSSBCSS--EEEETTCCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBC
T ss_pred eecCCCccccccc--cCcCCcCCCcceEC-HHHHHHHhhcCCceeCCCCCccc
Confidence 3568888777654 46777899995555 4556642 35699998765
No 98
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=42.54 E-value=16 Score=34.03 Aligned_cols=46 Identities=30% Similarity=0.623 Sum_probs=30.7
Q ss_pred CCCCCcccccCCCCCCCCccEEeccCCccchhhHHHHH------h-----cCCCCCccCC
Q 005292 653 DNFEEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWL------S-----RRPSCPVCKS 701 (704)
Q Consensus 653 d~~eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WL------k-----~k~SCPVCR~ 701 (704)
+..++.|.||.+. |+-+.-=.|-..||..||.+=| . ..-.|++|+-
T Consensus 54 Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3446779999974 3222111389999999999752 1 1247999964
No 99
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=42.39 E-value=7.9 Score=32.06 Aligned_cols=44 Identities=30% Similarity=0.477 Sum_probs=28.4
Q ss_pred CcccccCCCCCCCCccEEeccCCccchhhHHHH------H---hcCCCCCccCC
Q 005292 657 EACAICLDNPSIGDSIRHLPCLHKFHKDCIDPW------L---SRRPSCPVCKS 701 (704)
Q Consensus 657 etCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~W------L---k~k~SCPVCR~ 701 (704)
.-| ||...+..+.-|.--.|.-.||..|+.-- | .....||.|+.
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 345 89887753322222248999999997421 1 25788999963
No 100
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=42.21 E-value=13 Score=32.15 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=27.0
Q ss_pred CCCCCcccccCCCCCCCCccEE-eccCCccchhhHHHHH
Q 005292 653 DNFEEACAICLDNPSIGDSIRH-LPCLHKFHKDCIDPWL 690 (704)
Q Consensus 653 d~~eetCsICLEeF~~Gd~Vrv-LPCgHvFH~dCI~~WL 690 (704)
+.....|.+|...|..-..-.. -.||++|+..|...++
T Consensus 17 d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 17 DSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 3345679999999975543222 3499999999976653
No 101
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=41.35 E-value=16 Score=29.99 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=30.0
Q ss_pred CCCcccccCCCCCCCCccEEe--ccCCccchhhHHHH------Hh----cCCCCCccC
Q 005292 655 FEEACAICLDNPSIGDSIRHL--PCLHKFHKDCIDPW------LS----RRPSCPVCK 700 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvL--PCgHvFH~dCI~~W------Lk----~k~SCPVCR 700 (704)
....|.+|...+......+.- .|.-.||..|+.-= |. ....||.|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 467899999998765443333 58999999995321 11 145688885
No 102
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=41.21 E-value=11 Score=31.34 Aligned_cols=40 Identities=28% Similarity=0.727 Sum_probs=26.6
Q ss_pred CCcccccCCCCCCCCccEEec-----cC-CccchhhHHHHHhc----CCCCCccCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLP-----CL-HKFHKDCIDPWLSR----RPSCPVCKSS 702 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLP-----Cg-HvFH~dCI~~WLk~----k~SCPVCR~e 702 (704)
..-| ||..... ++ ++- |. ..||..||. |.. +-.||.|+..
T Consensus 16 ~~~C-~C~~~~~-g~---MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 16 PTYC-LCHQVSY-GE---MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CCCS-TTCCCSC-SS---EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCEE-ECCCCCC-CC---EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 3446 8987643 42 333 55 689999997 543 4579999764
No 103
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=40.68 E-value=17 Score=39.16 Aligned_cols=44 Identities=25% Similarity=0.412 Sum_probs=30.1
Q ss_pred CcccccCCCCCCCCccEEeccCCccchhhHHHHHhc-----CCCCCccCCCC
Q 005292 657 EACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR-----RPSCPVCKSSI 703 (704)
Q Consensus 657 etCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~-----k~SCPVCR~eI 703 (704)
..|+|-+.-+.. .++-..|.|.-|.+ +..||.. .-.||+|.+.+
T Consensus 216 L~CPlS~~ri~~--P~Rg~~C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~ 264 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVTCTHLQCFD-AALYLQMNEKKPTWICPVCDKKA 264 (360)
T ss_dssp SBCTTTCSBCSS--EEEETTCCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBC
T ss_pred eeCCCccceecc--CCcCCCCCCCccCC-HHHHHHHHhhCCCeECCCCCccc
Confidence 468888777654 36677799994444 5556642 35799998865
No 104
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.48 E-value=14 Score=29.64 Aligned_cols=38 Identities=18% Similarity=0.524 Sum_probs=24.7
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
...|..|-+.+..++.+. .-+..||..| ..|-.|+..|
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L 46 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFC--------LKCERCSKTL 46 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTT--------CBCSSSCCBC
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCC--------CCCCCCCCcc
Confidence 356888888777555443 3467788777 4477776655
No 105
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=40.35 E-value=15 Score=33.59 Aligned_cols=38 Identities=24% Similarity=0.363 Sum_probs=26.8
Q ss_pred cCCCCCcccccCCCCCCCCccEEe-ccCCccchhhHHHH
Q 005292 652 TDNFEEACAICLDNPSIGDSIRHL-PCLHKFHKDCIDPW 689 (704)
Q Consensus 652 ~d~~eetCsICLEeF~~Gd~VrvL-PCgHvFH~dCI~~W 689 (704)
.+.....|.+|...|..-..-..- .||++||..|....
T Consensus 65 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 65 EDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 344456899999999854322222 49999999996654
No 106
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=39.89 E-value=10 Score=33.67 Aligned_cols=45 Identities=31% Similarity=0.691 Sum_probs=29.8
Q ss_pred CcccccCCCCCCCCcc-EEeccCCccchhhHHHHHhc----CCCCCccCC
Q 005292 657 EACAICLDNPSIGDSI-RHLPCLHKFHKDCIDPWLSR----RPSCPVCKS 701 (704)
Q Consensus 657 etCsICLEeF~~Gd~V-rvLPCgHvFH~dCI~~WLk~----k~SCPVCR~ 701 (704)
..|.||...-...+.+ .--.|...||..|+.+-|.. .-.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3688888642222222 22249999999999876653 347999975
No 107
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=39.63 E-value=5.4 Score=34.35 Aligned_cols=46 Identities=22% Similarity=0.551 Sum_probs=30.5
Q ss_pred CCcccccCCCCCCC-CccEEe-ccCCccchhhHHHHHh--------cCCCCCccCC
Q 005292 656 EEACAICLDNPSIG-DSIRHL-PCLHKFHKDCIDPWLS--------RRPSCPVCKS 701 (704)
Q Consensus 656 eetCsICLEeF~~G-d~VrvL-PCgHvFH~dCI~~WLk--------~k~SCPVCR~ 701 (704)
+..|.||...-... +.+..- .|...||..|+.+=|. ..-.||.|..
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 56799999764322 222222 4999999999987654 1346998853
No 108
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.27 E-value=20 Score=29.52 Aligned_cols=38 Identities=24% Similarity=0.640 Sum_probs=26.7
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
...|..|-+.+...+.+. .-+..||..| ..|-.|+..|
T Consensus 15 ~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L 52 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATL 52 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBC
T ss_pred CCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCc
Confidence 567999998887666554 3577888888 4466666554
No 109
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.03 E-value=23 Score=29.98 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=27.0
Q ss_pred ecCCCCCcccccCCCCCCCCccEE-eccCCccchhhHHHH
Q 005292 651 QTDNFEEACAICLDNPSIGDSIRH-LPCLHKFHKDCIDPW 689 (704)
Q Consensus 651 ~~d~~eetCsICLEeF~~Gd~Vrv-LPCgHvFH~dCI~~W 689 (704)
..+.....|.+|...|..-..-.. -.||.+|+..|....
T Consensus 9 ~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 9 YPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred ccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 344456789999999975432222 249999999996543
No 110
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=38.88 E-value=6.5 Score=32.98 Aligned_cols=45 Identities=20% Similarity=0.409 Sum_probs=29.1
Q ss_pred CCcccccCCCCCCCCccEEe--ccCCccchhhHHHH---------HhcCCCCCccCC
Q 005292 656 EEACAICLDNPSIGDSIRHL--PCLHKFHKDCIDPW---------LSRRPSCPVCKS 701 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvL--PCgHvFH~dCI~~W---------Lk~k~SCPVCR~ 701 (704)
...| ||-.....+.-|.-= .|...||..|+.-- +..+..||.|+.
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 3456 898875444333333 59999999998521 123678999964
No 111
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=37.69 E-value=6.9 Score=41.11 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCCCCcccccCCCCCCCC-ccEEeccCCccchhhHHHHHh-------cCCCCCccCCC
Q 005292 653 DNFEEACAICLDNPSIGD-SIRHLPCLHKFHKDCIDPWLS-------RRPSCPVCKSS 702 (704)
Q Consensus 653 d~~eetCsICLEeF~~Gd-~VrvLPCgHvFH~dCI~~WLk-------~k~SCPVCR~e 702 (704)
+.....|.+|...|..-. ....-.||++||..|...++. ....|-.|-..
T Consensus 372 ~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 372 VTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred cccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 334578999999997443 222335999999999887652 23567777543
No 112
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=36.40 E-value=15 Score=32.59 Aligned_cols=46 Identities=22% Similarity=0.439 Sum_probs=31.1
Q ss_pred CCcccccCCCCCCCCccEEe--ccCCccchhhHHHH------H----hcCCCCCccCC
Q 005292 656 EEACAICLDNPSIGDSIRHL--PCLHKFHKDCIDPW------L----SRRPSCPVCKS 701 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvL--PCgHvFH~dCI~~W------L----k~k~SCPVCR~ 701 (704)
...|.||...|......+.- .|.-.||..|+.-= | ..+..||.|+.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccC
Confidence 35799999998654443333 48899999996411 1 04567999964
No 113
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=36.38 E-value=5.2 Score=36.77 Aligned_cols=45 Identities=20% Similarity=0.404 Sum_probs=28.1
Q ss_pred CCCcccccCCCCCCCCccE-EeccCCccchhhHHHHHhcCCCCCcc
Q 005292 655 FEEACAICLDNPSIGDSIR-HLPCLHKFHKDCIDPWLSRRPSCPVC 699 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~Vr-vLPCgHvFH~dCI~~WLk~k~SCPVC 699 (704)
....|.+|...|..-..-. .-.||.+||..|..........|-.|
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 3467999999997543222 23499999999976665545556555
No 114
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.94 E-value=21 Score=29.37 Aligned_cols=38 Identities=24% Similarity=0.543 Sum_probs=27.2
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
...|.-|-+.+..++.+.. -+..||.+| ..|-.|+..|
T Consensus 15 ~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L 52 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVIL 52 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBC
T ss_pred CCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCc
Confidence 4569999988876665544 467888887 5577777665
No 115
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=35.83 E-value=12 Score=30.08 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=25.4
Q ss_pred CCcccccCCCCCCCCccEEeccCCccch-hhHHHHHhcCCCCCccCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHK-DCIDPWLSRRPSCPVCKSS 702 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~-dCI~~WLk~k~SCPVCR~e 702 (704)
-..|..|...+..+.. ...=+..|+. .|..+- ....|-.|...
T Consensus 27 CF~C~~C~~~L~~~~~--~~~~g~~yC~~~cy~~~--f~~~C~~C~~~ 70 (76)
T 1iml_A 27 CLKCEKCGKTLTSGGH--AEHEGKPYCNHPCYSAM--FGPKGFGRGGA 70 (76)
T ss_dssp TCBCTTTCCBCCTTTE--EEETTEEEETTTHHHHH--SSCCCSSCCCS
T ss_pred CCCccccCccCCCCce--ECcCCeEeeCHHHHHHH--hCccCCCcCCc
Confidence 4578888877765531 2234567777 576543 34557777544
No 116
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=35.76 E-value=29 Score=33.89 Aligned_cols=34 Identities=18% Similarity=0.358 Sum_probs=25.1
Q ss_pred CCcccccCCCCCCCCccEEe-ccCCccchhhHHHH
Q 005292 656 EEACAICLDNPSIGDSIRHL-PCLHKFHKDCIDPW 689 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvL-PCgHvFH~dCI~~W 689 (704)
+..|.+|...|..-..-..- .||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 46899999999754432233 49999999996654
No 117
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=35.52 E-value=12 Score=33.35 Aligned_cols=33 Identities=21% Similarity=0.491 Sum_probs=22.4
Q ss_pred CcccccCCCCC----CC---CccEEeccCCccchhhHHHH
Q 005292 657 EACAICLDNPS----IG---DSIRHLPCLHKFHKDCIDPW 689 (704)
Q Consensus 657 etCsICLEeF~----~G---d~VrvLPCgHvFH~dCI~~W 689 (704)
..|.||+..-. .| +-+.--.|+..||..||..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999997531 12 23333359999999998865
No 118
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=35.31 E-value=5 Score=33.07 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=29.1
Q ss_pred CCcccccCCCCCCCCcc-EEeccCCccchhhHHHH----HhcCCCCCccCC
Q 005292 656 EEACAICLDNPSIGDSI-RHLPCLHKFHKDCIDPW----LSRRPSCPVCKS 701 (704)
Q Consensus 656 eetCsICLEeF~~Gd~V-rvLPCgHvFH~dCI~~W----Lk~k~SCPVCR~ 701 (704)
...| ||...+..++.. ..-.|.-.||..|+.-- +..+..||.|+.
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 3457 798876555322 22248999999997542 224568999963
No 119
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=34.56 E-value=23 Score=28.27 Aligned_cols=48 Identities=21% Similarity=0.459 Sum_probs=31.8
Q ss_pred CCCcccccCCCCCCCC-c-cEEeccCCccchhhHHHHHh-------cCCCCCccCCC
Q 005292 655 FEEACAICLDNPSIGD-S-IRHLPCLHKFHKDCIDPWLS-------RRPSCPVCKSS 702 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd-~-VrvLPCgHvFH~dCI~~WLk-------~k~SCPVCR~e 702 (704)
.+..|.||.......+ . +.--.|.-.||..|+.+=|. ..-.||.|...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 4678999998754322 2 22224999999999886442 23469998643
No 120
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.36 E-value=3.2 Score=36.10 Aligned_cols=46 Identities=22% Similarity=0.403 Sum_probs=29.2
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhc----CCCCCccCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR----RPSCPVCKS 701 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~----k~SCPVCR~ 701 (704)
...|.||...-....-+..=.|...||..|+.+=|.. .-.||.|..
T Consensus 16 ~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 16 SYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 5679999976322212222249999999999854432 335999953
No 121
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.75 E-value=11 Score=31.94 Aligned_cols=45 Identities=24% Similarity=0.543 Sum_probs=29.2
Q ss_pred CcccccCCCCCCCCccEEeccCCccchhhHHHHHhc-----CCCCCccCC
Q 005292 657 EACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR-----RPSCPVCKS 701 (704)
Q Consensus 657 etCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~-----k~SCPVCR~ 701 (704)
..|.||...-..++.+.-=.|...||..|+.+=|.. .=.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 468888864333322222248999999999865542 236999975
No 122
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=31.81 E-value=12 Score=37.85 Aligned_cols=46 Identities=30% Similarity=0.595 Sum_probs=26.2
Q ss_pred CcccccCCCCCCCCccEEeccCCccchhhHHHHHhc-----CCCCCccCCC
Q 005292 657 EACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR-----RPSCPVCKSS 702 (704)
Q Consensus 657 etCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~-----k~SCPVCR~e 702 (704)
..|.||...-..+.-+..=.|...||..|+.+=|.. .=.||.|...
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 358888764333323322249999999999965542 2369999753
No 123
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=30.52 E-value=28 Score=37.81 Aligned_cols=46 Identities=20% Similarity=0.539 Sum_probs=32.3
Q ss_pred CCCCCcccccCCCCCCCCccEEe--ccCCccchhhHHHHHhc----------CCCCCccCC
Q 005292 653 DNFEEACAICLDNPSIGDSIRHL--PCLHKFHKDCIDPWLSR----------RPSCPVCKS 701 (704)
Q Consensus 653 d~~eetCsICLEeF~~Gd~VrvL--PCgHvFH~dCI~~WLk~----------k~SCPVCR~ 701 (704)
+..+.-|.||-+. ++-+..= .|...||..||+.++.. .-.|=+|.-
T Consensus 90 DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 90 DGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 3447789999974 3333333 49999999999999832 336888853
No 124
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=30.10 E-value=6.8 Score=33.29 Aligned_cols=41 Identities=37% Similarity=0.774 Sum_probs=26.2
Q ss_pred cccccCCCCCCCCccEEe---ccCCccchhhHHHHHhc----C-CCCCccCC
Q 005292 658 ACAICLDNPSIGDSIRHL---PCLHKFHKDCIDPWLSR----R-PSCPVCKS 701 (704)
Q Consensus 658 tCsICLEeF~~Gd~VrvL---PCgHvFH~dCI~~WLk~----k-~SCPVCR~ 701 (704)
.|.||...-..+ ..| .|...||..|+.+-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~~---~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPD---KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGG---GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCc---ceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466666542222 233 38899999999977653 2 46999975
No 125
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=29.74 E-value=20 Score=33.30 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=23.8
Q ss_pred CCCcccccCCCCC-CCC-ccEEeccCCccchhhH
Q 005292 655 FEEACAICLDNPS-IGD-SIRHLPCLHKFHKDCI 686 (704)
Q Consensus 655 ~eetCsICLEeF~-~Gd-~VrvLPCgHvFH~dCI 686 (704)
.+..|.+|...|. ... ......|.|.+|..|=
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 4678999999994 322 3444469999999993
No 126
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=28.96 E-value=8.6 Score=33.20 Aligned_cols=47 Identities=23% Similarity=0.452 Sum_probs=29.8
Q ss_pred CCCcccccCCCCC-CCCccEEe-ccCCccchhhHHHHHh--cCCCCCccCC
Q 005292 655 FEEACAICLDNPS-IGDSIRHL-PCLHKFHKDCIDPWLS--RRPSCPVCKS 701 (704)
Q Consensus 655 ~eetCsICLEeF~-~Gd~VrvL-PCgHvFH~dCI~~WLk--~k~SCPVCR~ 701 (704)
.+..|.||...-. ..+.+..- .|.-.||..|+..-+. ..-.||.|..
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~ 74 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccC
Confidence 3678999997532 22222222 3889999999976432 2346998854
No 127
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=28.51 E-value=23 Score=34.99 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=25.2
Q ss_pred CCcccccCCCCCCCCccEEe-ccCCccchhhHHHH
Q 005292 656 EEACAICLDNPSIGDSIRHL-PCLHKFHKDCIDPW 689 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvL-PCgHvFH~dCI~~W 689 (704)
...|.+|...|..-..-..- .||.+||..|-..+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 46899999999855432233 49999999997654
No 128
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=28.43 E-value=47 Score=29.26 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=28.7
Q ss_pred CCCcccccCCCCCCCCccEEec--cCCccchhhHHHHHhc
Q 005292 655 FEEACAICLDNPSIGDSIRHLP--CLHKFHKDCIDPWLSR 692 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~VrvLP--CgHvFH~dCI~~WLk~ 692 (704)
....|.+|.+.+++..-| .-| =.|.||..|-...++.
T Consensus 14 a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHh
Confidence 456799999998866444 434 4799999999999874
No 129
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=28.30 E-value=34 Score=29.47 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=25.0
Q ss_pred CCCcccccCCCCCCCCccEE-eccCCccchhhHHHH
Q 005292 655 FEEACAICLDNPSIGDSIRH-LPCLHKFHKDCIDPW 689 (704)
Q Consensus 655 ~eetCsICLEeF~~Gd~Vrv-LPCgHvFH~dCI~~W 689 (704)
....|.+|...|..-..-.. -.||.+|+..|...+
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 35679999999986532222 249999999997553
No 130
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.96 E-value=49 Score=26.69 Aligned_cols=38 Identities=32% Similarity=0.535 Sum_probs=23.2
Q ss_pred CcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005292 657 EACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 657 etCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
..|..|-+.+..++.+ +..-+..||..| ..|-.|+..|
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L 53 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQN-VEYKGTVWHKDC--------FTCSNCKQVI 53 (82)
T ss_dssp CBCSSSCCBCCSSSCE-EECSSCEEETTT--------CCCSSSCCCC
T ss_pred CcCccCCcccccCceE-EEECcccccccc--------CchhhCCCcc
Confidence 4677777777655443 223467777777 4466666554
No 131
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.44 E-value=49 Score=25.92 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=14.2
Q ss_pred CcccccCCCCCCCCccEEeccCCccchhh
Q 005292 657 EACAICLDNPSIGDSIRHLPCLHKFHKDC 685 (704)
Q Consensus 657 etCsICLEeF~~Gd~VrvLPCgHvFH~dC 685 (704)
..|..|-+.+...+.+.. .-+..||..|
T Consensus 6 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~C 33 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME-YKGSSWHETC 33 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE-ETTEEEETTT
T ss_pred CCCccCCCcccCCceEEE-ECcCeecccC
Confidence 356666666554432221 2355666665
No 132
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=27.05 E-value=24 Score=29.86 Aligned_cols=29 Identities=21% Similarity=0.544 Sum_probs=23.4
Q ss_pred CCcccccCCCCCCCCccEEecc-CCccchhhHHH
Q 005292 656 EEACAICLDNPSIGDSIRHLPC-LHKFHKDCIDP 688 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPC-gHvFH~dCI~~ 688 (704)
..-|.||.++ -.++.+.| +=+||..|..+
T Consensus 8 ~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 8 LPWCCICNED----ATLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CSSCTTTCSC----CCEEETTTTSEEECSSHHHH
T ss_pred CCeeEEeCCC----CeEEecCCCCceehHHHHHH
Confidence 4569999997 44778889 89999999665
No 133
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.03 E-value=46 Score=26.12 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=13.8
Q ss_pred CcccccCCCCCCCCccEEeccCCccchhh
Q 005292 657 EACAICLDNPSIGDSIRHLPCLHKFHKDC 685 (704)
Q Consensus 657 etCsICLEeF~~Gd~VrvLPCgHvFH~dC 685 (704)
..|.-|-+.+..++.+ +..-+..||..|
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C 33 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHC 33 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTT
T ss_pred CCCccCCCccccCccE-EEECccccCccc
Confidence 3466666655543222 222455666655
No 134
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.44 E-value=51 Score=25.99 Aligned_cols=38 Identities=29% Similarity=0.512 Sum_probs=20.9
Q ss_pred CcccccCCCCCC--CCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005292 657 EACAICLDNPSI--GDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 657 etCsICLEeF~~--Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
..|.-|-+.+.. .+.+ +..-+..||.+| ..|-.|...|
T Consensus 6 ~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~C--------F~C~~C~~~L 45 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKY-ISFEERQWHNDC--------FNCKKCSLSL 45 (72)
T ss_dssp CSBTTTTBCCCCSSSCSC-EECSSCEECTTT--------CBCSSSCCBC
T ss_pred CCCcCCCccccCCCCcce-EEECCcccCccc--------CEeccCCCcC
Confidence 457777766654 2222 223566777766 3466665544
No 135
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=25.26 E-value=12 Score=30.92 Aligned_cols=44 Identities=32% Similarity=0.619 Sum_probs=27.2
Q ss_pred cccccCCCCCCCCccEEe-ccCCccchhhHHHHHhc-----CCCCCccCCC
Q 005292 658 ACAICLDNPSIGDSIRHL-PCLHKFHKDCIDPWLSR-----RPSCPVCKSS 702 (704)
Q Consensus 658 tCsICLEeF~~Gd~VrvL-PCgHvFH~dCI~~WLk~-----k~SCPVCR~e 702 (704)
.|.||...-..+ .+..- .|...||..|+.+=|.. .=.||.|+.+
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 466776542222 22221 38999999999865542 3379999754
No 136
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.01 E-value=54 Score=26.23 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=22.7
Q ss_pred CCcccccCCCCCC-CCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005292 656 EEACAICLDNPSI-GDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~-Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
...|..|-+.+.. ++...+..-+..||.+| ..|-.|...|
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L 45 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSL 45 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBC
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcC
Confidence 3467888777664 11112333567777777 3466665554
No 137
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=24.81 E-value=38 Score=27.89 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=23.6
Q ss_pred CcccccCCCCCCCCccEEe-ccCCccchhhHHHH
Q 005292 657 EACAICLDNPSIGDSIRHL-PCLHKFHKDCIDPW 689 (704)
Q Consensus 657 etCsICLEeF~~Gd~VrvL-PCgHvFH~dCI~~W 689 (704)
..|.+|...|..-..-..- .||.+|+..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 5799999999754322222 39999999996543
No 138
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=24.28 E-value=40 Score=29.72 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=19.8
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHh
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLS 691 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk 691 (704)
-..|..|-..+..++... +.=+..||..|..+++.
T Consensus 36 CF~C~~C~~~L~~g~~f~-~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRYL-LINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TCBCTTTCCBCCTTCEEE-ECSSSEEEGGGHHHHHH
T ss_pred cCccccCCCCCCCCCcEE-eeCCEEEcHHHhHHHhc
Confidence 355666766665444332 22466677777666654
No 139
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.39 E-value=69 Score=25.40 Aligned_cols=39 Identities=18% Similarity=0.457 Sum_probs=25.0
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
...|.-|-+.+...+.+.. .-+..||..| ..|-.|...|
T Consensus 11 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L 49 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVN-SNGELYHEQC--------FVCAQCFQQF 49 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEE-ETTEEECTTT--------CCCTTTCCCC
T ss_pred CCCchhcCCccCCCceEEE-eCccEecccc--------CeECCCCCCC
Confidence 4668888888765444422 2467788777 4466666554
No 140
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.30 E-value=47 Score=27.57 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=21.7
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
...|..|-+.+. ++. +..-+..||..| ..|-.|+..|
T Consensus 25 ~~~C~~C~~~I~-~~~--v~a~~~~~H~~C--------F~C~~C~~~L 61 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPF--LVALGKSWHPEE--------FNCAHCKNTM 61 (90)
T ss_dssp CCBBSSSCCBCC-SCE--EEETTEEECTTT--------CBCSSSCCBC
T ss_pred CCCCccCCCEec-ceE--EEECCccccccC--------CccCCCCCCC
Confidence 456777777663 322 223567777776 4466666554
No 141
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.04 E-value=68 Score=25.15 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=16.8
Q ss_pred CcccccCCCCCCCCccEEeccCCccchhhHHHHHh
Q 005292 657 EACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLS 691 (704)
Q Consensus 657 etCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk 691 (704)
..|..|...+. +.. ....=+..||..|..+.+.
T Consensus 34 F~C~~C~~~L~-~~~-~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 34 FVCSTCRAQLR-GQH-FYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CBCSSSCCBCT-TSC-EEESSSCEEEHHHHHHHHH
T ss_pred CcccccCCcCC-cCc-CEeeCCeEECHHHHHHHHc
Confidence 45666666553 211 2233456666666655554
No 142
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=22.95 E-value=29 Score=31.53 Aligned_cols=11 Identities=27% Similarity=1.165 Sum_probs=10.0
Q ss_pred cchhhHHHHHh
Q 005292 681 FHKDCIDPWLS 691 (704)
Q Consensus 681 FH~dCI~~WLk 691 (704)
||..|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999999986
No 143
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=22.91 E-value=29 Score=31.47 Aligned_cols=12 Identities=33% Similarity=1.146 Sum_probs=10.4
Q ss_pred ccchhhHHHHHh
Q 005292 680 KFHKDCIDPWLS 691 (704)
Q Consensus 680 vFH~dCI~~WLk 691 (704)
-||..|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 389999999986
No 144
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=21.69 E-value=13 Score=32.67 Aligned_cols=44 Identities=18% Similarity=0.467 Sum_probs=27.2
Q ss_pred cccccCCCCCCCCccEEeccCCccchhhHHHHHhc----CCCCCccCC
Q 005292 658 ACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSR----RPSCPVCKS 701 (704)
Q Consensus 658 tCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~----k~SCPVCR~ 701 (704)
.|.||...-.....+.--.|...||..|+.+=|.. .-.||.|..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 57777765322212222248999999999865542 346888864
No 145
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=21.59 E-value=18 Score=29.91 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=28.5
Q ss_pred CCcccccCCCCCCCCc-cEEeccCCccchhhHHHHHh-----cCCCCCccCC
Q 005292 656 EEACAICLDNPSIGDS-IRHLPCLHKFHKDCIDPWLS-----RRPSCPVCKS 701 (704)
Q Consensus 656 eetCsICLEeF~~Gd~-VrvLPCgHvFH~dCI~~WLk-----~k~SCPVCR~ 701 (704)
...-+||...+..+.. |.--.|.-.||..|+.---. ....||.|+.
T Consensus 9 ~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 9 VPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred CeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 4455689876643322 22224899999999853211 3567999963
No 146
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=20.94 E-value=12 Score=30.01 Aligned_cols=42 Identities=29% Similarity=0.617 Sum_probs=25.3
Q ss_pred CcccccCCCCCCCCccEEec--cC-CccchhhHHHHHhc----CCCCCccCC
Q 005292 657 EACAICLDNPSIGDSIRHLP--CL-HKFHKDCIDPWLSR----RPSCPVCKS 701 (704)
Q Consensus 657 etCsICLEeF~~Gd~VrvLP--Cg-HvFH~dCI~~WLk~----k~SCPVCR~ 701 (704)
....||.... .|+-+.-=. |. ..||..|+. |.. +-.||.|+.
T Consensus 9 ~~yC~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYCLCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEETTTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEEECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3344998754 242111113 55 699999998 543 457999965
No 147
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.73 E-value=71 Score=26.38 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=25.0
Q ss_pred CCcccccCCCCCCCCccEEeccCCccchhhHHHHHhcCCCCCccCCCC
Q 005292 656 EEACAICLDNPSIGDSIRHLPCLHKFHKDCIDPWLSRRPSCPVCKSSI 703 (704)
Q Consensus 656 eetCsICLEeF~~Gd~VrvLPCgHvFH~dCI~~WLk~k~SCPVCR~eI 703 (704)
...|.-|-+.+.. . + +..-+..||.+| ..|-.|...|
T Consensus 25 ~~~C~~C~~~I~~-~-~-~~a~~~~~H~~C--------F~C~~C~~~L 61 (89)
T 1x64_A 25 MPLCDKCGSGIVG-A-V-VKARDKYRHPEC--------FVCADCNLNL 61 (89)
T ss_dssp CCBCTTTCCBCCS-C-C-EESSSCEECTTT--------CCCSSSCCCT
T ss_pred CCCcccCCCEecc-c-E-EEECCceECccC--------CEecCCCCCC
Confidence 4568888887764 2 2 334678888888 4577777665
No 148
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=20.64 E-value=26 Score=24.63 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=21.2
Q ss_pred CcccccCCCCCCCCccEEeccCCccchhhH
Q 005292 657 EACAICLDNPSIGDSIRHLPCLHKFHKDCI 686 (704)
Q Consensus 657 etCsICLEeF~~Gd~VrvLPCgHvFH~dCI 686 (704)
+.|+.|-...-..+.+. --|..||+.|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--ECCeEecccCC
Confidence 56999999877665554 35899999983
No 149
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=20.04 E-value=47 Score=32.07 Aligned_cols=37 Identities=22% Similarity=0.592 Sum_probs=26.9
Q ss_pred cCCCCCcccccCCCCCCCCccEEe---ccCCccchhhHHHHHhc
Q 005292 652 TDNFEEACAICLDNPSIGDSIRHL---PCLHKFHKDCIDPWLSR 692 (704)
Q Consensus 652 ~d~~eetCsICLEeF~~Gd~VrvL---PCgHvFH~dCI~~WLk~ 692 (704)
.+..+.-|.||-+. ..+..- .|...||..||+.++..
T Consensus 75 eDG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 75 DDGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp TTSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 34457889999974 333333 38899999999999853
Done!