Query 005293
Match_columns 704
No_of_seqs 279 out of 1353
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 21:11:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 61.5 3.7 0.00013 33.3 2.0 28 151-178 17-44 (56)
2 3j21_g 50S ribosomal protein L 57.8 4.1 0.00014 32.4 1.6 28 151-178 12-39 (51)
3 1x4u_A Zinc finger, FYVE domai 46.1 8.6 0.00029 32.7 1.9 27 151-177 12-40 (84)
4 1joc_A EEA1, early endosomal a 43.2 9.1 0.00031 35.1 1.7 27 151-177 67-95 (125)
5 1z2q_A LM5-1; membrane protein 37.2 14 0.00049 31.3 1.9 27 151-177 19-47 (84)
6 1wfk_A Zinc finger, FYVE domai 36.2 14 0.00049 31.8 1.8 27 151-177 7-35 (88)
7 2yw8_A RUN and FYVE domain-con 35.6 16 0.00054 30.9 1.9 28 151-178 17-46 (82)
8 1dvp_A HRS, hepatocyte growth 34.8 12 0.00041 36.9 1.2 25 154-178 162-188 (220)
9 1vfy_A Phosphatidylinositol-3- 32.0 14 0.00048 30.6 1.0 23 155-177 13-37 (73)
10 2vrw_B P95VAV, VAV1, proto-onc 30.2 16 0.00056 38.6 1.4 29 151-179 355-386 (406)
11 3t7l_A Zinc finger FYVE domain 29.5 21 0.00071 30.8 1.7 27 151-177 18-46 (90)
12 3u5e_m 60S ribosomal protein L 28.2 22 0.00077 32.0 1.7 26 151-176 91-118 (128)
13 2knc_A Integrin alpha-IIB; tra 27.0 73 0.0025 25.6 4.3 27 16-51 17-43 (54)
14 3zyq_A Hepatocyte growth facto 26.3 21 0.0007 35.6 1.2 24 155-178 166-191 (226)
15 2dkt_A Ring finger and CHY zin 25.7 18 0.00063 34.3 0.7 41 152-192 82-126 (143)
16 1wv8_A TT1413, hypothetical pr 25.5 26 0.0009 29.7 1.5 15 567-581 7-21 (73)
17 1y02_A CARP2, FYVE-ring finger 24.6 20 0.00069 32.9 0.7 27 151-177 17-45 (120)
18 2l8s_A Integrin alpha-1; trans 20.7 85 0.0029 25.3 3.5 27 16-51 14-40 (54)
19 2knc_B Integrin beta-3; transm 20.6 1.3E+02 0.0044 25.6 4.9 29 264-292 24-52 (79)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=61.49 E-value=3.7 Score=33.28 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=24.1
Q ss_pred ccccccccccccccCCCcCCccCCcccc
Q 005293 151 DDALFCTLCNAEVRRFSKHCRSCDKCVD 178 (704)
Q Consensus 151 ~~~~fC~tC~~~KPpRShHCsvCnrCVl 178 (704)
-...+|..|.+.-|++|..|+.|+..-+
T Consensus 17 ~~k~ICrkC~ARnp~~A~~CRKCg~~~L 44 (56)
T 2ayj_A 17 FLKKVCRKCGALNPIRATKCRRCHSTNL 44 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCCCCE
T ss_pred hchhhhccccCcCCcccccccCCCCCCC
Confidence 4577899999999999999999986544
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=57.79 E-value=4.1 Score=32.37 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=24.1
Q ss_pred ccccccccccccccCCCcCCccCCcccc
Q 005293 151 DDALFCTLCNAEVRRFSKHCRSCDKCVD 178 (704)
Q Consensus 151 ~~~~fC~tC~~~KPpRShHCsvCnrCVl 178 (704)
-..+.|..|....|.+++.|+.|+.--+
T Consensus 12 ~~k~iCpkC~a~~~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 12 FKKYVCLRCGATNPWGAKKCRKCGYKRL 39 (51)
T ss_dssp SSEEECTTTCCEECTTCSSCSSSSSCCC
T ss_pred hCCccCCCCCCcCCCCceecCCCCCccc
Confidence 3567899999999999999999987644
No 3
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.13 E-value=8.6 Score=32.68 Aligned_cols=27 Identities=26% Similarity=0.576 Sum_probs=19.3
Q ss_pred cccccccccccc--ccCCCcCCccCCccc
Q 005293 151 DDALFCTLCNAE--VRRFSKHCRSCDKCV 177 (704)
Q Consensus 151 ~~~~fC~tC~~~--KPpRShHCsvCnrCV 177 (704)
+....|..|... .-.|-|||+.|++-+
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vf 40 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSF 40 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEE
Confidence 455678888753 346889999998743
No 4
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=43.22 E-value=9.1 Score=35.08 Aligned_cols=27 Identities=26% Similarity=0.653 Sum_probs=19.7
Q ss_pred cccccccccccc--ccCCCcCCccCCccc
Q 005293 151 DDALFCTLCNAE--VRRFSKHCRSCDKCV 177 (704)
Q Consensus 151 ~~~~fC~tC~~~--KPpRShHCsvCnrCV 177 (704)
.....|..|... ...|-|||+.||+-|
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEE
Confidence 445679999753 346889999999844
No 5
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=37.18 E-value=14 Score=31.32 Aligned_cols=27 Identities=30% Similarity=0.651 Sum_probs=18.6
Q ss_pred cccccccccccc--ccCCCcCCccCCccc
Q 005293 151 DDALFCTLCNAE--VRRFSKHCRSCDKCV 177 (704)
Q Consensus 151 ~~~~fC~tC~~~--KPpRShHCsvCnrCV 177 (704)
.+...|..|... .-.|-|||+.|++-+
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEE
Confidence 445568888643 235789999998854
No 6
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=36.17 E-value=14 Score=31.81 Aligned_cols=27 Identities=15% Similarity=0.423 Sum_probs=19.8
Q ss_pred cccccccccccc--ccCCCcCCccCCccc
Q 005293 151 DDALFCTLCNAE--VRRFSKHCRSCDKCV 177 (704)
Q Consensus 151 ~~~~fC~tC~~~--KPpRShHCsvCnrCV 177 (704)
++...|..|... .-.|-|||+.|++-+
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEE
Confidence 456678888753 346789999999843
No 7
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=35.58 E-value=16 Score=30.93 Aligned_cols=28 Identities=36% Similarity=0.832 Sum_probs=19.9
Q ss_pred cccccccccccc--ccCCCcCCccCCcccc
Q 005293 151 DDALFCTLCNAE--VRRFSKHCRSCDKCVD 178 (704)
Q Consensus 151 ~~~~fC~tC~~~--KPpRShHCsvCnrCVl 178 (704)
++...|..|... .-.|-|||+.||+-+-
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C 46 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFC 46 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEC
Confidence 456678888753 2357899999998543
No 8
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=34.81 E-value=12 Score=36.92 Aligned_cols=25 Identities=28% Similarity=0.709 Sum_probs=17.7
Q ss_pred ccccccccc--ccCCCcCCccCCcccc
Q 005293 154 LFCTLCNAE--VRRFSKHCRSCDKCVD 178 (704)
Q Consensus 154 ~fC~tC~~~--KPpRShHCsvCnrCVl 178 (704)
..|..|... .-.|-|||+.||+.+-
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C 188 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFC 188 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CccCCCCCccCCcccccccCCcCCEEC
Confidence 468888643 2358899999998544
No 9
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=32.03 E-value=14 Score=30.58 Aligned_cols=23 Identities=30% Similarity=0.826 Sum_probs=16.3
Q ss_pred cccccccc--ccCCCcCCccCCccc
Q 005293 155 FCTLCNAE--VRRFSKHCRSCDKCV 177 (704)
Q Consensus 155 fC~tC~~~--KPpRShHCsvCnrCV 177 (704)
.|..|... .-.|-|||+.||+-+
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cccCCCCccCCccccccCCCCCEEE
Confidence 57778643 235789999998843
No 10
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=30.23 E-value=16 Score=38.64 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=21.9
Q ss_pred ccccccccccccc---cCCCcCCccCCccccC
Q 005293 151 DDALFCTLCNAEV---RRFSKHCRSCDKCVDG 179 (704)
Q Consensus 151 ~~~~fC~tC~~~K---PpRShHCsvCnrCVlr 179 (704)
....+|..|...- -.|-|||+.|+..|.+
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~ 386 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHK 386 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECG
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccch
Confidence 4667999998644 4688999999876554
No 11
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=29.55 E-value=21 Score=30.80 Aligned_cols=27 Identities=30% Similarity=0.736 Sum_probs=18.5
Q ss_pred cccccccccccc--ccCCCcCCccCCccc
Q 005293 151 DDALFCTLCNAE--VRRFSKHCRSCDKCV 177 (704)
Q Consensus 151 ~~~~fC~tC~~~--KPpRShHCsvCnrCV 177 (704)
.....|..|... .-.|-|||+.||+-+
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEE
Confidence 345568888742 235789999998744
No 12
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=28.16 E-value=22 Score=31.99 Aligned_cols=26 Identities=27% Similarity=0.621 Sum_probs=22.5
Q ss_pred ccccccccccccccCCCcCCcc--CCcc
Q 005293 151 DDALFCTLCNAEVRRFSKHCRS--CDKC 176 (704)
Q Consensus 151 ~~~~fC~tC~~~KPpRShHCsv--CnrC 176 (704)
-...+|..|.+.-|+++..|+. |+..
T Consensus 91 ~~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 91 CDKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp TSCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred cceEeeccccccCCchhhccchhhCCCc
Confidence 3568999999999999999994 8764
No 13
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=27.01 E-value=73 Score=25.59 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccccCCCCcccccC
Q 005293 16 LCLLLIHQWYALLVFILYVRCTAINPADPGIMSKFD 51 (704)
Q Consensus 16 ia~~~lY~~l~~~V~~lYiRc~~~~paDPGi~~~~~ 51 (704)
+++++--..|++++++|| .| |+|++..
T Consensus 17 ~svl~GLllL~li~~~Lw-K~--------GFFkR~~ 43 (54)
T 2knc_A 17 VGVLGGLLLLTILVLAMW-KV--------GFFKRNR 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH-HH--------HHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHH-Hc--------CcccCCC
Confidence 344555666778888888 56 7887654
No 14
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=26.29 E-value=21 Score=35.63 Aligned_cols=24 Identities=29% Similarity=0.693 Sum_probs=15.9
Q ss_pred cccccccc--ccCCCcCCccCCcccc
Q 005293 155 FCTLCNAE--VRRFSKHCRSCDKCVD 178 (704)
Q Consensus 155 fC~tC~~~--KPpRShHCsvCnrCVl 178 (704)
.|..|... .-.|-|||+.||+.+-
T Consensus 166 ~C~~C~~~F~~~~RrhHCR~CG~v~C 191 (226)
T 3zyq_A 166 ECHRCRVQFGVMTRKHHCRACGQIFC 191 (226)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred CCcCcCCCCCccccccccCCCcCEeC
Confidence 57777532 2347799999988543
No 15
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=25.73 E-value=18 Score=34.27 Aligned_cols=41 Identities=32% Similarity=0.724 Sum_probs=27.1
Q ss_pred cccccccccccccC-CCcCCccCCccccCC--C-ccccccccccc
Q 005293 152 DALFCTLCNAEVRR-FSKHCRSCDKCVDGF--D-HHCRWLNNCVG 192 (704)
Q Consensus 152 ~~~fC~tC~~~KPp-RShHCsvCnrCVlrf--D-HHCpWLgNCVG 192 (704)
...||..|+.|.+. ...||..||.|-.+- | -||.--|.|+.
T Consensus 82 ~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 82 GEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp CSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred eeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 45578888877543 467788888877762 1 37777777754
No 16
>1wv8_A TT1413, hypothetical protein TTHA1013; structural genomics, unknown function, novel F riken structural genomics/proteomics initiative, RSGI; 2.20A {Thermus thermophilus} SCOP: d.304.1.1
Probab=25.52 E-value=26 Score=29.72 Aligned_cols=15 Identities=40% Similarity=0.838 Sum_probs=12.6
Q ss_pred ceeeccCCCceeeec
Q 005293 567 SVVWDQEAGRYVSVP 581 (704)
Q Consensus 567 sv~wd~~agr~vs~~ 581 (704)
-+.||+|||-||...
T Consensus 7 ~~~~Deeagv~vA~s 21 (73)
T 1wv8_A 7 QALWDGEAGVWVAES 21 (73)
T ss_dssp EEEEETTTTEEEEEC
T ss_pred EEEEeCCCCEEEEEC
Confidence 468999999999764
No 17
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=24.61 E-value=20 Score=32.86 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=18.0
Q ss_pred cccccccccccc--ccCCCcCCccCCccc
Q 005293 151 DDALFCTLCNAE--VRRFSKHCRSCDKCV 177 (704)
Q Consensus 151 ~~~~fC~tC~~~--KPpRShHCsvCnrCV 177 (704)
.....|..|... ...|-|||+.||+.+
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~if 45 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNF 45 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEE
T ss_pred cccCcccCcCCccccccccccCCCCCCee
Confidence 344578888753 346889999999853
No 18
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=20.67 E-value=85 Score=25.25 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccccCCCCcccccC
Q 005293 16 LCLLLIHQWYALLVFILYVRCTAINPADPGIMSKFD 51 (704)
Q Consensus 16 ia~~~lY~~l~~~V~~lYiRc~~~~paDPGi~~~~~ 51 (704)
+++++=-..|++++++|| .| |+|++..
T Consensus 14 ~svl~GLLLL~Lii~~Lw-K~--------GFFKR~~ 40 (54)
T 2l8s_A 14 LSAFAGLLLLMLLILALW-KI--------GFFKRPL 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH-HH--------HHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHH-Hc--------CcccCCC
Confidence 345555566778888888 66 7887654
No 19
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.60 E-value=1.3e+02 Score=25.61 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHhh
Q 005293 264 IPLGELFFFHMILIRKGITTYEYVVAMRA 292 (704)
Q Consensus 264 i~Lg~Lf~fHLyLI~~N~TTyE~l~~~R~ 292 (704)
+.+..|++|-++......--|+.+.+.|.
T Consensus 24 iGllllliwk~~~~i~DrrE~~kFEkE~~ 52 (79)
T 2knc_B 24 IGLAALLIWKLLITIHDRKEFAKFEEERA 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666666666666655544
Done!