Query 005293
Match_columns 704
No_of_seqs 279 out of 1353
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 21:11:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005293.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005293hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ayja1 g.41.8.7 (A:1-56) Ribo 73.4 0.76 5.5E-05 35.3 2.1 25 151-175 17-41 (56)
2 d1joca1 g.50.1.1 (A:1348-1411) 48.2 3.4 0.00025 31.7 1.7 28 151-178 6-35 (64)
3 d2dmda2 g.37.1.1 (A:8-33) Zinc 45.3 2.4 0.00018 27.3 0.3 15 168-182 2-16 (26)
4 d1vfya_ g.50.1.1 (A:) vps27p p 41.3 3.8 0.00028 31.7 1.0 24 155-178 7-32 (67)
5 d2dkta2 g.93.1.1 (A:82-137) RI 40.8 3.7 0.00027 31.4 0.8 24 156-179 23-46 (56)
6 d2dkta2 g.93.1.1 (A:82-137) RI 39.3 2.7 0.0002 32.2 -0.2 41 154-194 3-47 (56)
7 d1wfka_ g.50.1.1 (A:) Zinc fin 33.1 7.7 0.00056 31.6 1.7 28 151-178 7-36 (88)
8 d1wv8a1 d.304.1.1 (A:2-72) Hyp 32.9 7.3 0.00053 30.9 1.4 16 566-581 5-20 (71)
9 d1dvpa2 g.50.1.1 (A:149-220) H 32.4 6.9 0.0005 30.6 1.2 24 155-178 15-40 (72)
10 d2pg3a1 c.26.2.1 (A:1-230) Que 28.9 4.6 0.00034 36.6 -0.5 25 153-179 182-206 (230)
11 d2adra2 g.37.1.1 (A:131-161) A 23.6 7.3 0.00053 26.3 -0.2 14 168-181 2-15 (31)
No 1
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=73.36 E-value=0.76 Score=35.28 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.4
Q ss_pred ccccccccccccccCCCcCCccCCc
Q 005293 151 DDALFCTLCNAEVRRFSKHCRSCDK 175 (704)
Q Consensus 151 ~~~~fC~tC~~~KPpRShHCsvCnr 175 (704)
-....|..|.+.-|+||..|+.|+.
T Consensus 17 ~~k~ICrkC~AR~p~rAt~CRKCg~ 41 (56)
T d2ayja1 17 FLKKVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCC
T ss_pred hhhHHHhhccccCCccccccccCCC
Confidence 5678899999999999999998875
No 2
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.22 E-value=3.4 Score=31.72 Aligned_cols=28 Identities=25% Similarity=0.604 Sum_probs=19.5
Q ss_pred ccccccccccc--cccCCCcCCccCCcccc
Q 005293 151 DDALFCTLCNA--EVRRFSKHCRSCDKCVD 178 (704)
Q Consensus 151 ~~~~fC~tC~~--~KPpRShHCsvCnrCVl 178 (704)
++..-|..|.. ..-.|-|||+.||+.|=
T Consensus 6 ~~~~~C~~C~~~F~~~~rrHHCR~CG~v~C 35 (64)
T d1joca1 6 NEVQNCMACGKGFSVTVRRHHCRQCGNIFC 35 (64)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred ccCCcCcCcCCcccCCccccchhhhCCeec
Confidence 34556888864 23457899999998654
No 3
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.31 E-value=2.4 Score=27.32 Aligned_cols=15 Identities=33% Similarity=0.888 Sum_probs=12.3
Q ss_pred cCCccCCccccCCCc
Q 005293 168 KHCRSCDKCVDGFDH 182 (704)
Q Consensus 168 hHCsvCnrCVlrfDH 182 (704)
|.|.+|++|..|-|.
T Consensus 2 hkc~~c~kcfsrkdk 16 (26)
T d2dmda2 2 HKCEVCGKCFSRKDK 16 (26)
T ss_dssp CCBTTTTBCCCCHHH
T ss_pred CccchhhhHhcchhH
Confidence 679999999988663
No 4
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=41.32 E-value=3.8 Score=31.69 Aligned_cols=24 Identities=29% Similarity=0.733 Sum_probs=17.2
Q ss_pred ccccccc--cccCCCcCCccCCcccc
Q 005293 155 FCTLCNA--EVRRFSKHCRSCDKCVD 178 (704)
Q Consensus 155 fC~tC~~--~KPpRShHCsvCnrCVl 178 (704)
-|..|+. ..-.|-|||+.||+-+=
T Consensus 7 ~C~~C~~~F~~~~rkhhCr~CG~~fC 32 (67)
T d1vfya_ 7 ACMICSKKFSLLNRKHHCRSCGGVFC 32 (67)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred ccccCCCcccCcccccccccCCCEec
Confidence 3777865 33467899999998544
No 5
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=40.81 E-value=3.7 Score=31.39 Aligned_cols=24 Identities=25% Similarity=0.740 Sum_probs=14.7
Q ss_pred cccccccccCCCcCCccCCccccC
Q 005293 156 CTLCNAEVRRFSKHCRSCDKCVDG 179 (704)
Q Consensus 156 C~tC~~~KPpRShHCsvCnrCVlr 179 (704)
|..|++-....-.||..|+.|+..
T Consensus 23 CgiCRvG~~~~ffHC~~C~~C~~~ 46 (56)
T d2dkta2 23 CGICRIGPKEDFFHCLKCNLCLTT 46 (56)
T ss_dssp TTEEEESCGGGEEEETTTTEEEEG
T ss_pred CCceeecCCccccccCccccccCc
Confidence 444444445566777777777754
No 6
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.30 E-value=2.7 Score=32.21 Aligned_cols=41 Identities=29% Similarity=0.717 Sum_probs=31.3
Q ss_pred ccccccccccc-CCCcCCccCCccccCCC---cccccccccccch
Q 005293 154 LFCTLCNAEVR-RFSKHCRSCDKCVDGFD---HHCRWLNNCVGHK 194 (704)
Q Consensus 154 ~fC~tC~~~KP-pRShHCsvCnrCVlrfD---HHCpWLgNCVG~r 194 (704)
.||..|+.|-- ....||..||.|-.+-. -||.--|.|+...
T Consensus 3 YfC~iC~l~dddk~~yHC~~CgiCRvG~~~~ffHC~~C~~C~~~~ 47 (56)
T d2dkta2 3 YYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTN 47 (56)
T ss_dssp EECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEEGG
T ss_pred eECCcCCcccCCCCcccCCCCCceeecCCccccccCccccccCcc
Confidence 58999988843 34689999999986522 3999999998653
No 7
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.12 E-value=7.7 Score=31.56 Aligned_cols=28 Identities=14% Similarity=0.355 Sum_probs=20.1
Q ss_pred ccccccccccc--cccCCCcCCccCCcccc
Q 005293 151 DDALFCTLCNA--EVRRFSKHCRSCDKCVD 178 (704)
Q Consensus 151 ~~~~fC~tC~~--~KPpRShHCsvCnrCVl 178 (704)
+....|..|+. -...|-|||+.|++.+=
T Consensus 7 ~~~s~C~~C~~~Fs~~~rrhhCr~CG~vfC 36 (88)
T d1wfka_ 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFC 36 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEE
T ss_pred cccCcCcccCchhccccccccccccChhhC
Confidence 44556888875 33567899999999543
No 8
>d1wv8a1 d.304.1.1 (A:2-72) Hypothetical protein TTHA1013 {Thermus thermophilus [TaxId: 274]}
Probab=32.91 E-value=7.3 Score=30.93 Aligned_cols=16 Identities=38% Similarity=0.785 Sum_probs=13.2
Q ss_pred cceeeccCCCceeeec
Q 005293 566 TSVVWDQEAGRYVSVP 581 (704)
Q Consensus 566 ~sv~wd~~agr~vs~~ 581 (704)
...+||.|||-+|--.
T Consensus 5 V~a~WD~EAgVWva~s 20 (71)
T d1wv8a1 5 VQALWDGEAGVWVAES 20 (71)
T ss_dssp EEEEEETTTTEEEEEC
T ss_pred EEEEEcccCCEEEEEc
Confidence 4579999999999654
No 9
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=32.43 E-value=6.9 Score=30.64 Aligned_cols=24 Identities=25% Similarity=0.718 Sum_probs=17.3
Q ss_pred ccccccc--cccCCCcCCccCCcccc
Q 005293 155 FCTLCNA--EVRRFSKHCRSCDKCVD 178 (704)
Q Consensus 155 fC~tC~~--~KPpRShHCsvCnrCVl 178 (704)
.|..|.. -.-.|-|||+.||+.+-
T Consensus 15 ~C~~C~~~F~~~~rrhhCr~CG~~~C 40 (72)
T d1dvpa2 15 VCHRCRVEFTFTNRKHHCRNCGQVFC 40 (72)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred ccccCCCcccCccccccccccCCeeC
Confidence 4777764 23458899999998654
No 10
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=28.93 E-value=4.6 Score=36.60 Aligned_cols=25 Identities=16% Similarity=0.289 Sum_probs=19.6
Q ss_pred ccccccccccccCCCcCCccCCccccC
Q 005293 153 ALFCTLCNAEVRRFSKHCRSCDKCVDG 179 (704)
Q Consensus 153 ~~fC~tC~~~KPpRShHCsvCnrCVlr 179 (704)
......| +++.+.+||-.|..|+.|
T Consensus 182 ~~~T~SC--y~~~~~~~CG~C~~C~~R 206 (230)
T d2pg3a1 182 RYHTLTC--YNGIKGDGCGQCAACHLR 206 (230)
T ss_dssp HHHCCCC--TTSCCTTTTSCSHHHHHH
T ss_pred hhccCCC--CCCCCCCCCCCCHhHHHH
Confidence 3445566 677788999999999987
No 11
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=23.59 E-value=7.3 Score=26.25 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=12.1
Q ss_pred cCCccCCccccCCC
Q 005293 168 KHCRSCDKCVDGFD 181 (704)
Q Consensus 168 hHCsvCnrCVlrfD 181 (704)
.+|.+|+||..|.|
T Consensus 2 f~C~~C~R~FaRrD 15 (31)
T d2adra2 2 YPCGLCNRAFTRRD 15 (31)
T ss_dssp EECTTTCCEESSHH
T ss_pred cccccccchhhHHH
Confidence 36999999999887
Done!