Query 005295
Match_columns 703
No_of_seqs 174 out of 822
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 21:12:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00733 putative oligopeptid 100.0 5E-100 1E-104 867.8 45.1 557 58-676 1-590 (591)
2 PF03169 OPT: OPT oligopeptide 100.0 1.7E-95 4E-100 847.8 50.7 594 58-675 1-623 (624)
3 TIGR00728 OPT_sfam oligopeptid 100.0 2.8E-96 6E-101 856.5 37.4 593 43-673 3-649 (654)
4 TIGR00727 ISP4_OPT small oligo 100.0 5.1E-91 1.1E-95 799.0 43.5 591 41-673 7-671 (681)
5 KOG2262 Sexual differentiation 100.0 1.9E-88 4E-93 742.5 32.6 601 42-683 55-732 (761)
6 COG1297 Predicted membrane pro 100.0 2.1E-84 4.5E-89 706.4 35.4 565 55-679 11-617 (624)
7 PF03169 OPT: OPT oligopeptide 96.2 0.12 2.7E-06 61.1 16.5 132 179-353 475-620 (624)
8 TIGR00733 putative oligopeptid 94.1 3.8 8.3E-05 48.3 20.0 227 433-674 4-267 (591)
9 COG0833 LysP Amino acid transp 59.1 22 0.00049 41.1 6.8 76 48-145 35-112 (541)
10 KOG1289 Amino acid transporter 58.6 49 0.0011 38.4 9.3 100 22-144 13-116 (550)
11 TIGR00728 OPT_sfam oligopeptid 55.3 37 0.0008 40.7 8.2 61 277-352 583-647 (654)
12 TIGR00927 2A1904 K+-dependent 32.4 61 0.0013 40.1 5.0 38 95-139 945-982 (1096)
13 PF03547 Mem_trans: Membrane t 31.8 68 0.0015 35.3 5.1 18 65-82 247-264 (385)
14 PF05756 S-antigen: S-antigen 31.4 27 0.00059 29.7 1.4 42 10-51 44-85 (94)
15 TIGR02106 cyd_oper_ybgT cyd op 29.8 59 0.0013 22.8 2.5 17 63-79 5-21 (30)
16 PF02535 Zip: ZIP Zinc transpo 28.9 1.6E+02 0.0035 31.2 7.3 27 67-93 173-199 (317)
17 PF03839 Sec62: Translocation 28.7 86 0.0019 32.4 4.7 14 92-105 148-161 (224)
18 PF08173 YbgT_YccB: Membrane b 27.8 68 0.0015 22.1 2.5 17 63-79 5-21 (28)
19 PRK14749 hypothetical protein; 26.5 74 0.0016 22.1 2.5 17 63-79 5-21 (30)
20 KOG2927 Membrane component of 25.6 56 0.0012 35.8 2.8 32 400-431 182-214 (372)
21 TIGR00793 kdgT 2-keto-3-deoxyg 24.5 2.2E+02 0.0048 30.8 7.0 148 508-667 101-267 (314)
22 KOG2887 Membrane protein invol 24.0 1.3E+02 0.0028 29.8 4.7 30 84-113 76-105 (175)
23 PF10529 Hist_rich_Ca-bd: Hist 23.6 34 0.00074 20.1 0.4 10 3-12 4-13 (15)
24 KOG2652 RNA polymerase II tran 23.0 50 0.0011 35.9 1.9 25 15-39 274-300 (348)
25 KOG2357 Uncharacterized conser 22.6 1.3E+02 0.0028 33.7 5.0 32 100-131 139-174 (440)
26 COG4890 Predicted outer membra 21.6 1E+02 0.0022 22.2 2.5 17 63-79 5-21 (37)
27 PF01788 PsbJ: PsbJ; InterPro 21.6 1.1E+02 0.0024 22.7 2.9 26 526-551 12-37 (40)
28 KOG2736 Presenilin [Signal tra 20.8 98 0.0021 34.2 3.5 16 100-115 361-376 (406)
No 1
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=4.7e-100 Score=867.82 Aligned_cols=557 Identities=19% Similarity=0.284 Sum_probs=437.4
Q ss_pred cchHHHHHHHHHHHHHHHHhhhccceeeccccchHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccchHHHHHHHhhccc
Q 005295 58 QLTIRAFVVSFVLSVLFTFIVMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKFLENSRILRQPFTRQENTVIQTCVVASSG 137 (703)
Q Consensus 58 ~lT~RavvlG~llg~l~~~~N~y~gLk~G~t~~~si~aalls~~i~k~~~r~l~~~~~~~~pft~~EnnivQT~Asa~~~ 137 (703)
|+|+|++++|+++|++++++|+|+|||+|||+++|||++++||+++|.++| +|++|||++||+|||+++
T Consensus 1 elT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~-----------~t~~EnnivQT~asA~~~ 69 (591)
T TIGR00733 1 EYTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRD-----------RSILENNMVQTAASAAGT 69 (591)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhcc-----------CChhHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999998765 599999999999999998
Q ss_pred cccccchhhhHHHHHHHhhhhcccccCccccCchhHHHHHHHHHHHHHHhhhcccceeeeecccccccCcchhHHhhhhc
Q 005295 138 IAFSGGFGSYLLGMSDRIALQSEDTNLGYKNLSLTWIIGFLFVVSFLGLFSVVPLRKVMIIDFKLTYPSGTATAYLINSF 217 (703)
Q Consensus 138 ~~~~gg~~~~i~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lGv~faipLRr~lI~~~~L~fP~g~AtA~li~sl 217 (703)
++ ++...+||++.+. .+.++++++++.|++++|++|++|++||||+||+|+||+||||+||||+|++.
T Consensus 70 ~a---g~~~~lPAl~~lg---------~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae~l~~g 137 (591)
T TIGR00733 70 LS---SVIFVLPALLMLG---------YWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAEVLKAG 137 (591)
T ss_pred HH---HHHHHHHHHHhcC---------ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHcc
Confidence 86 5778999988753 22346777888999999999999999999999999999999999999999975
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccccccccccccccceeeeeeecccccccceecchHHHHHHH
Q 005295 218 HTPEGARLAKKQVRTLGKFFSFSFLWGFFQWFFTAGDNCGFVSFPTFGLKAYEYRFYFDFSAIYVGVGMICPYIINISVL 297 (703)
Q Consensus 218 H~~~g~~~a~~~~~~l~~~f~~s~~~~~~~~~~~~~~~~~~~~~~~~Gl~~~~~~~~~d~Spa~~G~G~ivG~~~~~s~f 297 (703)
+ +++ .++|.|.++..+..+.+|.++.-+..... ....+...|.. .++|++||||+|+|+|||+|++++++||
T Consensus 138 ~--~g~--~~~~~~~l~~g~~~s~~~~~~~~~~~~~~--~~~~~~~~g~~--~~~~~~~~SpalvG~G~ivG~~v~~s~~ 209 (591)
T TIGR00733 138 D--KAR--NGTGAKPIAYGGILASIYAFLGSLRVWSG--TLSAAKLVGRR--ALYFGSDLSLALIGVGYLVGLNIGFAMF 209 (591)
T ss_pred c--ccc--chhhHHHHHHHHHHHHHHHHHHHhccCCc--hHHHHHhcCCc--ceEEEecccHHHHcCceeeChHHHHHHH
Confidence 2 322 34567778888888888877731100000 00000011111 3578899999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhcccCcccCCCCCccc-hhhhhh-hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 005295 298 LGGILSWGLMWPLIEKRKGDWYSADLSPTS-LQGLQG-YKVFISIALILGDGLYNFCKVLSRTLVGLFYQVRTRNASSDL 375 (703)
Q Consensus 298 ~G~vl~w~il~P~l~~~~~~w~~~~~~~~~-~~~~~~-y~~~igvg~m~~~g~~~l~~~i~~~~~~i~~~~~~~~~~~~~ 375 (703)
+|++++|++++|++.++ .|+|++.++++ ...+|+ |.+|+|+++|+++|++++.++++++.+++++.++..+++
T Consensus 210 ~G~vlaWgvl~P~l~~~--~~~~~~~~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~~~~~~~~~~~~~~~~~~~~--- 284 (591)
T TIGR00733 210 LGGAIAWGVAIPIYTAK--MGSPGDLSALDLAWTIWSTKVRYIGVGAIVVAALWTLLKLRGPIARGIKAGLEAARRR--- 284 (591)
T ss_pred HHHHHHHHHHHHHHHhc--CCCCCCccHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---
Confidence 99999999999999863 57666554432 134554 457899999999999999999988888888777654321
Q ss_pred CcccCCCccccccccchhhhhhhcccCCChhHHHHHHHHHHHHHHHHhhhhhhhhhh-----H----HHHHHHHHHHHHH
Q 005295 376 PVAENSSPETAKLSYDDQRRTRLFLKDQIPTWFAISGYVAIAIVSIIVLPHIFHQLK-----C----YHVLVIYLFAPTL 446 (703)
Q Consensus 376 ~~~~~~~~~~~~~~~d~~~r~~~~~~~~vP~w~~~~~~~~~~~l~~~~~~~~~~~l~-----~----~~~~lai~la~v~ 446 (703)
++.++.+|+ ++|+|.|+...+.++ .++. +..+.+ +.| + ...++++++++++
T Consensus 285 ------------~~~~~~~r~----~~dip~~~v~~~~~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~la~vl~f~~ 344 (591)
T TIGR00733 285 ------------QAGEAVLRT----EEDLPINIVLTLVAL-FVIP--LADFLL-YAPILHNIGMAIAVMAVLMLIIGFFV 344 (591)
T ss_pred ------------ccccccccc----cccccHHHHHHHHHH-HHHH--HHHHhc-CCcccchhhHHHHHHHHHHHHHHHHH
Confidence 011122344 358998875433322 1222 111122 222 2 3445566666666
Q ss_pred hhcccccccc--ccCccchhhhHHHHHHHHHhc---c-----C-CCchhHHHHHHHHHHHHHHHHHHHhhhhcccchhcC
Q 005295 447 AFCNAYGCGL--TDWSLASTYGKLAIFTIGAWA---G-----S-SHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYLTL 515 (703)
Q Consensus 447 ~~~~~~~~G~--T~~~p~~~~g~isqli~g~~~---g-----~-~~~~~~anL~~~~i~~~~a~qA~d~~qDLKtG~llg 515 (703)
+.+.+|++|+ ||.||.++++|++|++++.+. | + .++++.+||+.++++|.+++||+|+||||||||++|
T Consensus 345 a~v~g~~~G~iGts~nPvsg~~~~t~l~~a~~~~~~g~~~~~~~~~~~v~~~L~~g~vv~~aa~~AgD~mqDlKtG~LlG 424 (591)
T TIGR00733 345 AAIAGYMAGLVGSSNSPISGIGIMSVLFTALILKGLGLSGTGSQIPELMAATIFTAAVVCTAAAISNDNLQDLKTGYLVG 424 (591)
T ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhcCcccCccccchhHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcC
Confidence 6666788889 888999999999999999997 2 1 157899999999999999999999999999999999
Q ss_pred CChhhHHHHHHhhhhhhHhhHHHHHHHHHHhhccCCC-----CCCccCCchHHHHHHHHhhhccCCCCCchhhHHHHHHH
Q 005295 516 ASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGV-----PGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVL 590 (703)
Q Consensus 516 a~Pr~qf~aQiiGtivga~v~~~v~~l~~~ay~~i~~-----p~~~~~aP~a~~~~~~A~~g~~G~~~lp~~~~~~~~~~ 590 (703)
+|||+||++|++|+++|+++++++|++++++| +++. |+++|+||||.+|+++++-... +.+|+. +..++
T Consensus 425 atPr~Q~~aq~iG~~vg~~v~~~v~~ll~~ay-g~~~~~~~~~~~~l~APqA~l~~ava~gi~~--~~l~~~---~i~~g 498 (591)
T TIGR00733 425 ATPWRQQVALIIGTFVGALVMAPVLNLLIKAY-GIAGTPTAKGENALPAPQAFLMAAVTEGVFT--GTLEWT---MVFIG 498 (591)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccCCCccccCCCHHHHHHHHHhhhcC--CCccHH---HHHHH
Confidence 99999999999999999999999999999999 5532 5678999999999999832211 223322 23444
Q ss_pred HHHHHHHHHHHhhhhhhhhhccchhhhhcccccccchhHHHHHHHHHHHHHHHhccccc------cccchhhhhhhhhhh
Q 005295 591 FGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFIWEKIDKAK------ADAFGPAVASGLICG 664 (703)
Q Consensus 591 ~~~~i~~~~l~~~~p~~~~~~ip~~~a~gig~~lp~~~~~~~~iG~l~~~~~~r~~~~~------~~~~g~~vAsGLIaG 664 (703)
.++++++.+++++++||++++-++++++|+|||+|++++++|++|++++|+|+|+++++ .+++++++|||||||
T Consensus 499 a~~g~~l~~~~~~~~~~~~~~~~p~lavgig~yLP~~~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vASGLIaG 578 (591)
T TIGR00733 499 AGIGIALIIIDEILAKRGSKFRTPVMAVGVGIYLPLSLGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGAAGLIVG 578 (591)
T ss_pred HHHHHHHHHHHHHhhhcccccCCchhHHHHHhhcchhHHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEecHhhcc
Confidence 55677888899888876666644489999999999999999999999999999976532 247899999999999
Q ss_pred hhhhHHHHHHHH
Q 005295 665 DGIWSLPSSILA 676 (703)
Q Consensus 665 e~l~Gvv~a~l~ 676 (703)
|||+||++|++.
T Consensus 579 E~l~Gv~~A~~~ 590 (591)
T TIGR00733 579 ESLTGVVFAAII 590 (591)
T ss_pred hHHHHHHHHHHh
Confidence 999999999764
No 2
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=1.7e-95 Score=847.82 Aligned_cols=594 Identities=27% Similarity=0.408 Sum_probs=486.3
Q ss_pred cchHHHHHHHHHHHHHHHHhhhccceeeccccchHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccchHHHHHHHhhccc
Q 005295 58 QLTIRAFVVSFVLSVLFTFIVMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKFLENSRILRQPFTRQENTVIQTCVVASSG 137 (703)
Q Consensus 58 ~lT~RavvlG~llg~l~~~~N~y~gLk~G~t~~~si~aalls~~i~k~~~r~l~~~~~~~~pft~~EnnivQT~Asa~~~ 137 (703)
|+|+|++++|++++++++++|+|+++|+|+++.++++++|+||+++|.++|...++++||+|||+||||++||+||++++
T Consensus 1 ~lT~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~~~~~~ln~gp~~~kE~~~vq~~asa~~~ 80 (624)
T PF03169_consen 1 QLTFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLARIGWRFSLNPGPFTIKENNLVQTMASAAGG 80 (624)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhhccccccCCCCCCHHHHHHHHHHHHHhhh
Confidence 79999999999999999999999999999999999999999999999999866677899999999999999999999999
Q ss_pred cccccchhhhHHHHHHHhhhhcccccCccccCchhHHHHHHHHHHHHHHhhhcccceeeeecccccccCcchhHHhhhhc
Q 005295 138 IAFSGGFGSYLLGMSDRIALQSEDTNLGYKNLSLTWIIGFLFVVSFLGLFSVVPLRKVMIIDFKLTYPSGTATAYLINSF 217 (703)
Q Consensus 138 ~~~~gg~~~~i~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lGv~faipLRr~lI~~~~L~fP~g~AtA~li~sl 217 (703)
.++++++.+.+|++..+. .+.++++.+.+++.++++|+.|++|+||++|+|++|+||+++|+|++++++
T Consensus 81 ~~~a~~~i~~ipa~~~~~-----------~~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~~i~al 149 (624)
T PF03169_consen 81 MAYAAGFIAAIPALLFLG-----------QPFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAELINAL 149 (624)
T ss_pred hhhhhhHHHHHHHHHHhc-----------cchhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHHHHHHh
Confidence 888889999999987753 224677889999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcc----CCCcccccc-ccccccccceeeeeeecccccccceecchH
Q 005295 218 HTPEGARLAKKQVRTLGKFFSFSFLWGFFQ-WFFTA----GDNCGFVSF-PTFGLKAYEYRFYFDFSAIYVGVGMICPYI 291 (703)
Q Consensus 218 H~~~g~~~a~~~~~~l~~~f~~s~~~~~~~-~~~~~----~~~~~~~~~-~~~Gl~~~~~~~~~d~Spa~~G~G~ivG~~ 291 (703)
|++++++.+++|+|.|.++|.++++|++++ |+++. ...|+.... +.......++.|++|||++++|+|+++|++
T Consensus 150 h~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~dws~~~~g~g~i~p~~ 229 (624)
T PF03169_consen 150 HSGGGWREAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWSFSFDWSPILIGSGLIVPLW 229 (624)
T ss_pred ccCccchhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccceeeEeecHHhcCCCeeccHH
Confidence 986666778899999999999999999975 44442 223432221 222223345679999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCcccCCCCCccch---------hhhhhhhhHHHHHHHHHhhHHHH------HHHHH
Q 005295 292 INISVLLGGILSWGLMWPLIEKRKGDWYSADLSPTSL---------QGLQGYKVFISIALILGDGLYNF------CKVLS 356 (703)
Q Consensus 292 ~~~s~f~G~vl~w~il~P~l~~~~~~w~~~~~~~~~~---------~~~~~y~~~igvg~m~~~g~~~l------~~~i~ 356 (703)
+++|+++|++++|+++.|+++++++.|++.+.|..+. +...+|.+|.+.++|+.++.+.+ .++..
T Consensus 230 ~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~ 309 (624)
T PF03169_consen 230 AQLSMFLGAVLAWGIIIPILYYSGNAWGGAYLPFNSNSLFDNNGSSDGTLNWTKYIGYGPMYGSGLFALSYGWSFAALTA 309 (624)
T ss_pred HHHHHHHHHHHHHHhcCCeeeeeccccCCccccccchhhhhhcCccccccCHHHHHHHHHHHHhHHHHHhhcccchhhHH
Confidence 9999999999999999999998768887766662211 23456889999999999999988 44444
Q ss_pred HHHHHHHHHHHhccCCCCCCcccCCCccccccccchhhhhhhcccCCChhHHHHHHHHHHHHHHHHhhhhhh--hhhhHH
Q 005295 357 RTLVGLFYQVRTRNASSDLPVAENSSPETAKLSYDDQRRTRLFLKDQIPTWFAISGYVAIAIVSIIVLPHIF--HQLKCY 434 (703)
Q Consensus 357 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~r~~~~~~~~vP~w~~~~~~~~~~~l~~~~~~~~~--~~l~~~ 434 (703)
.+.+.+..+.+...++. .+ ..++.++.+++.||.++.++++|+|+|.||++.+++++.++++++++.++ .++|+|
T Consensus 310 ~i~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~d~~~~~~~~~~~vP~ww~~~~~~~~~v~~~~~~~~~~~~~~~p~~ 386 (624)
T PF03169_consen 310 SIVHAILWHWKAIWQAF-KQ--SKSSQRSSKSSEDDPHYRLMRTYKEVPMWWYLAGLVVSFVLAIIVVEAWFGQTQMPWW 386 (624)
T ss_pred HHHHHHHHHHHHHHhhh-hh--hcccccccccccCCchhhhhhhcCCcchHHHHHHHHHHHHHHHHHHhhhhcccCCchh
Confidence 33333332222111000 00 00000111122344444456789999999999999999899998888888 679999
Q ss_pred HHHHHHHHHHHHhhccccccccccCccchhhhHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccchhc
Q 005295 435 HVLVIYLFAPTLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGSSHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYLT 514 (703)
Q Consensus 435 ~~~lai~la~v~~~~~~~~~G~T~~~p~~~~g~isqli~g~~~g~~~~~~~anL~~~~i~~~~a~qA~d~~qDLKtG~ll 514 (703)
.++++++++++++++.+++.|+||+||.+++++++|+++|++. |+++++||+++++++++++||+|++||||+|||+
T Consensus 387 ~~ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~~~---pg~~~a~l~~~~~~~~~~~qa~~~~~DlK~G~~l 463 (624)
T PF03169_consen 387 GLILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGLLL---PGNPIANLLFGGYGYAAASQAGDLMQDLKTGHYL 463 (624)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 6669999999999999999999999999999999
Q ss_pred CCChhhHHHHHHhhhhhhHhhHHHHHHHHHHhhccCCC--CCCccCCchHHHHHHHHhhhccCCCCCchhhHHHHHHHHH
Q 005295 515 LASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGV--PGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFG 592 (703)
Q Consensus 515 ga~Pr~qf~aQiiGtivga~v~~~v~~l~~~ay~~i~~--p~~~~~aP~a~~~~~~A~~g~~G~~~lp~~~~~~~~~~~~ 592 (703)
|+|||+||++|++|+++|+++++++++++.++|++..+ .+.++++||+..|++++.....+..+.|.+...++.+
T Consensus 464 ~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~~~~~~~~~~~~~~~~~~ap~a~~~aav~~g~~~~~~~~~~~~~~~~~~--- 540 (624)
T PF03169_consen 464 GIPPRAQFYAQIIGTIIGAFVAVAVMRLLNQAYPCGPDQGDSFSCPAPQAFAWAAVAWGLIGPQRGLPYSALPWGFL--- 540 (624)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCcCcchHHHHHHHHHHHhcCCcccchHHHHHHHHH---
Confidence 99999999999999999999999999999888854322 1467888888888888754423323455554444333
Q ss_pred HHHHHHHHHhhhhhhhhhccchhhhhc----ccccccchhHHHHHHHHHHHHHHHhccccccccchhhhhhhhhhhhhhh
Q 005295 593 AAIVINLIRDSIRKEWARFIPLPMAMA----IPFYLGPYFAIDMCVGSLLLFIWEKIDKAKADAFGPAVASGLICGDGIW 668 (703)
Q Consensus 593 ~~i~~~~l~~~~p~~~~~~ip~~~a~g----ig~~lp~~~~~~~~iG~l~~~~~~r~~~~~~~~~g~~vAsGLIaGe~l~ 668 (703)
++++..++.... +|++|.+++++ +|+|+|.+++.++++|++++++||||+++++++|++++||||+|||+|+
T Consensus 541 ~G~~~~i~~~l~----~~~~P~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~y~~~laagl~aG~~l~ 616 (624)
T PF03169_consen 541 IGAVLPILFWLL----QRKFPSPLAFGGASSIGFYLPSNYTSAIFIGGLFQFYWRRRYPKWWEKYNYVLAAGLIAGEALM 616 (624)
T ss_pred HHHHHHHHHHHH----HhhCChhheeeecccccccchhHHHHHHHHHHHHHHHhhhcchhHHHhHhhHHHHHHHHHHHHH
Confidence 333333332211 34578779999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 005295 669 SLPSSIL 675 (703)
Q Consensus 669 Gvv~a~l 675 (703)
|++++++
T Consensus 617 ~li~~~~ 623 (624)
T PF03169_consen 617 GLIIAFL 623 (624)
T ss_pred HHHHHHh
Confidence 9999875
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=2.8e-96 Score=856.48 Aligned_cols=593 Identities=27% Similarity=0.456 Sum_probs=480.4
Q ss_pred cccccCCCCCCCCCccchHHHHHHHHHHHHHHHHhhhccceeeccccchHHHHHHHHHHHHHHHHHhhhh-----cccCC
Q 005295 43 VERAFDGKEVPSWRKQLTIRAFVVSFVLSVLFTFIVMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKFLEN-----SRILR 117 (703)
Q Consensus 43 ~~~~~~~~~~~~~~~~lT~RavvlG~llg~l~~~~N~y~gLk~G~t~~~si~aalls~~i~k~~~r~l~~-----~~~~~ 117 (703)
||. .+.+|.|+. +|+|+|++++|++++++++++|+|++||+|+++.+++++++++|+++|.|+|.+|+ ..+||
T Consensus 3 vra-v~~~ddp~~-~~~T~Ra~~lG~i~~~v~~~~n~~~~lr~g~~~~~si~~~ll~~~~g~~~~~~lP~~~~~~~~lnp 80 (654)
T TIGR00728 3 VRA-VPPTDDPSL-PVITFRAWFLGILIGVVFAGVNQFFGLRTGSVSISSIVAALLAYPLGKLWALIIPDWEGWKFSLNP 80 (654)
T ss_pred ccc-CCCCCCCCC-cchhHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHhcCCccccceecCC
Confidence 566 888888887 89999999999999999999999999999999999999999999999999999985 36899
Q ss_pred CCCCccchHHHHHHHhhccccccccchhhhHHHHHHHhhhhcccccCccccCchhH--HHHHHHHHHHHHHhhhccccee
Q 005295 118 QPFTRQENTVIQTCVVASSGIAFSGGFGSYLLGMSDRIALQSEDTNLGYKNLSLTW--IIGFLFVVSFLGLFSVVPLRKV 195 (703)
Q Consensus 118 ~pft~~EnnivQT~Asa~~~~~~~gg~~~~i~al~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~lGv~faipLRr~ 195 (703)
+|||+||||++||+||+++++++ + ...|||+..++. .+.+.++ ++.|+..+|++|+.|++|+||+
T Consensus 81 gpft~kE~~~iq~~asa~~~~~~--~-~~~i~a~~~~~~----------~~~~~~~~~l~~~~~~~~~lG~~~a~~lRr~ 147 (654)
T TIGR00728 81 GPFNVKENNLIQTAASACGGLAY--A-IFILPAQKMFYT----------SNFSWGYQILLVWSTQLGFLGFGFAGLLRRA 147 (654)
T ss_pred CCCChhhheeEEeeeeccccHHH--H-HHHHHHHHHHcC----------CCCCHHHHHHHHHHHHHHHhHHhhHHHhhhh
Confidence 99999999999999999988764 2 678999876441 1123445 5666677889999999999999
Q ss_pred eeecccccccCcchhHHhhhhcC----CchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccccccccccccccce
Q 005295 196 MIIDFKLTYPSGTATAYLINSFH----TPEGARLAKKQVRTLGKFFSFSFLWGFFQWFFTAGDNCGFVSFPTFGLKAYEY 271 (703)
Q Consensus 196 lI~~~~L~fP~g~AtA~li~slH----~~~g~~~a~~~~~~l~~~f~~s~~~~~~~~~~~~~~~~~~~~~~~~Gl~~~~~ 271 (703)
+|+|++|+||+++|||+++|+|| +.+|++.+|..+..+.+.|..++.|.+++|++|... .+.-+.+.|.. ++
T Consensus 148 lV~~~~l~~P~~la~a~l~~al~~~~~~~~g~~~~r~l~~~~~~~f~~~~~~~~~~~~~p~~~--~~~~fgglg~~--~~ 223 (654)
T TIGR00728 148 LVVPAKLPWPSGLATAELFKALHGKFHTANGDTIAKNLLRVLLKYFSSSFLWSFVSWFFPGFT--AFQTFGGLGSG--SI 223 (654)
T ss_pred eeCcccccCCcccHHHHHHHHhhhccCccCCCccchhHHHhHHHHHHHHHHHHHHHHHhcCCc--ccccccccccc--cc
Confidence 99999999999999999999964 445555566655667788889999999999887411 11111233333 35
Q ss_pred eeeeeecccccccceecchHHHHHHHHHHHHHHhhhhhhhhcccCcccCCCCCccchhhhhhhhh-HHHHHHHHHhhHHH
Q 005295 272 RFYFDFSAIYVGVGMICPYIINISVLLGGILSWGLMWPLIEKRKGDWYSADLSPTSLQGLQGYKV-FISIALILGDGLYN 350 (703)
Q Consensus 272 ~~~~d~Spa~~G~G~ivG~~~~~s~f~G~vl~w~il~P~l~~~~~~w~~~~~~~~~~~~~~~y~~-~igvg~m~~~g~~~ 350 (703)
+|.+|+|++++|+|+++|+++++++|+|++++|+++.|+++++ |.|..+..|.++....++|.. |++++.|+++++++
T Consensus 224 ~f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~~-n~~~~~~~p~~s~~~~~~~~~~y~~~~~il~~~~~~ 302 (654)
T TIGR00728 224 GFGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYYK-NTWPADADPIDSSSTIDSTGVRYNSVGLIVVDGLWT 302 (654)
T ss_pred ceecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHhc-CccccccCCCcchhhhcCCCceeeeeeEEEeCCCce
Confidence 6666778889999999999999999999999999999999874 667656666655566777765 99999998888766
Q ss_pred HHHHHHHHH-----------------------------HHHHHHHHhccCCCCCCcccCCCccccccccchhhhhhhccc
Q 005295 351 FCKVLSRTL-----------------------------VGLFYQVRTRNASSDLPVAENSSPETAKLSYDDQRRTRLFLK 401 (703)
Q Consensus 351 l~~~i~~~~-----------------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~r~~~~~~ 401 (703)
+.+...... +++.+++|+..+. .++.+ +...+..++.++++|
T Consensus 303 l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~d~~~~~~ 373 (654)
T TIGR00728 303 LVKPLYPIYSPLVLSIDFYALLFNAFSDTIYSFALAHGRDIISARRDHYKL--------GRDDH-VRLLSRDEDLKVKNY 373 (654)
T ss_pred ecHHHHHHhCcceeeHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhc--------cCCCC-hHHHhhccccccccc
Confidence 644332211 2233322222110 00000 000000111234578
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhhhhh--hhhhHHHHHHHHHHHHHHhhccccccccccCccchhhhHHHHHHHHHhccC
Q 005295 402 DQIPTWFAISGYVAIAIVSIIVLPHIF--HQLKCYHVLVIYLFAPTLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGS 479 (703)
Q Consensus 402 ~~vP~w~~~~~~~~~~~l~~~~~~~~~--~~l~~~~~~lai~la~v~~~~~~~~~G~T~~~p~~~~g~isqli~g~~~g~ 479 (703)
+|+|.||++.++++++++++++++.++ .++|||+++++++++++++++++++.|+| ||.+++++++|+++|+++
T Consensus 374 ~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~~~~g~t--np~~~l~~~~~li~g~~~-- 449 (654)
T TIGR00728 374 KEVPAWWYLSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFVLAIPIGILAGIT--NPVSGLNIITELIIGYIL-- 449 (654)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhhheEEee--cccchhhHHHHHhheeec--
Confidence 999999999999998899988888776 57899999999999999999999999999 999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhcccchhcCCChhhHHHHHHhhhhhhHhhHHHHHHHHHHhhccCCCCCCccCC
Q 005295 480 SHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAA 559 (703)
Q Consensus 480 ~~~~~~anL~~~~i~~~~a~qA~d~~qDLKtG~llga~Pr~qf~aQiiGtivga~v~~~v~~l~~~ay~~i~~p~~~~~a 559 (703)
|+++.+||+++++++++++||+|++||||+|||+|+|||+||++|++|+++|+++++++++|+.++|++ ++++|+|
T Consensus 450 -pg~~~a~l~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~~vg~~v~~~v~~~~~~~~~~---~~~~~~~ 525 (654)
T TIGR00728 450 -PGRPLANLAFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGTIVGSLVNAPVLEWLYHAIGN---QNNNFTC 525 (654)
T ss_pred -CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCCCccC
Confidence 777999999999999999999999999999999999999999999999999999999999999999953 5578999
Q ss_pred chHHHHHHHHhh-hccCCC---CCchhh-HHHHHHHHHHHHHHHHHHhhhhhhhhhccchhhhhcccccccchhHHHHH-
Q 005295 560 PFAMVYRNMAKL-GVEGFS---ALPKNC-LLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMC- 633 (703)
Q Consensus 560 P~a~~~~~~A~~-g~~G~~---~lp~~~-~~~~~~~~~~~i~~~~l~~~~p~~~~~~ip~~~a~gig~~lp~~~~~~~~- 633 (703)
|++..|++.|++ +++|++ +.+.+. +.++.++.++.++.+++++++|| +++|+|+|+++++++|+|+++++.++
T Consensus 526 p~a~~~~~aa~~~g~~Gp~~f~~~~~y~~~~~~~l~G~~~i~~~~~~~~~p~-~~~~~~~~~~~~~~~~lp~~~~~~~~~ 604 (654)
T TIGR00728 526 PNALVFYNASLIWGVIGPKIFSGKGLYCGLMWFFLVGVGAVLVWLVRKLFPK-WIKYINPPVAVGGGGYIPPATAVNYST 604 (654)
T ss_pred CcccchhhheeeeccccchhcCCCCccHHHHHHHHHHHHHHHHHHHHHHccc-hhhhcCHHHhhhhhhccCCcchhhhhH
Confidence 999999999987 878843 222232 22333222445566677777776 67899999999999999999999999
Q ss_pred ---HHHHHHHHHHhcccccc--ccchhhhhhhhhhhhhhhHHHHH
Q 005295 634 ---VGSLLLFIWEKIDKAKA--DAFGPAVASGLICGDGIWSLPSS 673 (703)
Q Consensus 634 ---iG~l~~~~~~r~~~~~~--~~~g~~vAsGLIaGe~l~Gvv~a 673 (703)
+|++++++|+||+++++ ++|++++||||+|||+|+||++-
T Consensus 605 ~~~vG~~~~~~~~rr~~~~~~~~~y~~~laagL~~G~al~gviif 649 (654)
T TIGR00728 605 WAAVGGFFNYRWRKNKRADWKAEKYNYVLAAGLIAGEALAGVIIF 649 (654)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999987665 89999999999999999999974
No 4
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=5.1e-91 Score=799.03 Aligned_cols=591 Identities=18% Similarity=0.256 Sum_probs=500.1
Q ss_pred cccccccCCCCCCCCCccchHHHHHHHHHHHHHHHHhhhccceeeccccchHHHHHHHHHHHHHHHHHhhhhc-------
Q 005295 41 FSVERAFDGKEVPSWRKQLTIRAFVVSFVLSVLFTFIVMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKFLENS------- 113 (703)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~lT~RavvlG~llg~l~~~~N~y~gLk~G~t~~~si~aalls~~i~k~~~r~l~~~------- 113 (703)
+.||.+.+.+|.|++ +++|+|+|++|++++++.+++|+++++|.+.+...+++++|++|+++|+|+|.+|+.
T Consensus 7 peVr~~v~~~DDp~~-p~~TfRa~~lG~~l~~i~s~in~~f~lR~p~i~is~~~~qll~yp~Gk~~a~~lP~~~~~~~g~ 85 (681)
T TIGR00727 7 PEVRAAVPPTDDPTI-PVNTIRAWFIGLIWSTVGSGFNMFFSHRVPSISLNTPIIQMLAYPCGKAWAKIIPDWTITIRGR 85 (681)
T ss_pred hhhhhcCCCCCCCCC-ccccHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHHHHHHcCccccccccc
Confidence 369999999999998 999999999999999999999999999999999999999999999999999999963
Q ss_pred --ccCCCCCCccchHHHHHHHhhccccccccchhhhHHHHHHHhhhhcccccCccccCchhHHHHHHHHHHHHHHhhhcc
Q 005295 114 --RILRQPFTRQENTVIQTCVVASSGIAFSGGFGSYLLGMSDRIALQSEDTNLGYKNLSLTWIIGFLFVVSFLGLFSVVP 191 (703)
Q Consensus 114 --~~~~~pft~~EnnivQT~Asa~~~~~~~gg~~~~i~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lGv~faip 191 (703)
++||||||+|||+++|+||+++.+.+++ ...|+++.. .++ .++++++++.++++.+++|..+|.|
T Consensus 86 ~~~lNPGPF~~KEh~liti~a~~~~~~~y~---~~~i~~~~~-fy~---------~~~~~g~~il~~lstq~~G~g~Ag~ 152 (681)
T TIGR00727 86 KYNIIPGPFNVKEHMFITLMYAVSFGAAYT---TDIILAQKL-FYK---------SAFGFGYQFLLSLSTQFIGFGFAGI 152 (681)
T ss_pred eeccCCCCCChhcceeeeeeeehhccHHHH---HHHHHHHHH-HhC---------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999998776653 446666554 332 2346788899999999999999999
Q ss_pred cceeeeecccccccCcchhHHhhhhcCCchhHHHH---HHHHHHHHHHHHHHHHHHHhh-hhhcc----CCC--------
Q 005295 192 LRKVMIIDFKLTYPSGTATAYLINSFHTPEGARLA---KKQVRTLGKFFSFSFLWGFFQ-WFFTA----GDN-------- 255 (703)
Q Consensus 192 LRr~lI~~~~L~fP~g~AtA~li~slH~~~g~~~a---~~~~~~l~~~f~~s~~~~~~~-~~~~~----~~~-------- 255 (703)
+||++|+|++|+||++++|+.|+|+||++++.... ++|+|+|+++|.++|+|+|++ |+++. ...
T Consensus 153 lRr~lV~p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P~n~ 232 (681)
T TIGR00727 153 LRRFVVYPARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNWMTWIKPNNI 232 (681)
T ss_pred hhceEeccccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhccCcch
Confidence 99999999999999999999999999985543221 367899999999999999875 34431 112
Q ss_pred ---ccccccccccccccceeeeeeeccc--ccccceecchHHHHHHHHHHHHHHhhhhhhhhcccCcccCCCCCccch--
Q 005295 256 ---CGFVSFPTFGLKAYEYRFYFDFSAI--YVGVGMICPYIINISVLLGGILSWGLMWPLIEKRKGDWYSADLSPTSL-- 328 (703)
Q Consensus 256 ---~~~~~~~~~Gl~~~~~~~~~d~Spa--~~G~G~ivG~~~~~s~f~G~vl~w~il~P~l~~~~~~w~~~~~~~~~~-- 328 (703)
..++...|+|+.+ -++|||+.. ++|+++++|+++.+|+++|.+++++++.|.+++ +|.|+.+++|.++.
T Consensus 233 ~~~~i~g~~~GlGl~p---~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy-~N~w~~~~lPi~s~~~ 308 (681)
T TIGR00727 233 NLNQIFGGSTGLGINP---ISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYY-SNTWYCQYLPISSNGL 308 (681)
T ss_pred hhhhhhccccCCCcCC---cCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHH-cccccccccCCccchh
Confidence 2356666777764 288999984 689999999999999999999999999999998 78898888775432
Q ss_pred h-------------------hhhhhh----hHHHH--HHHHHhhHHHHHHHHHHHH----HHHHHHHHhccCCCCCCccc
Q 005295 329 Q-------------------GLQGYK----VFISI--ALILGDGLYNFCKVLSRTL----VGLFYQVRTRNASSDLPVAE 379 (703)
Q Consensus 329 ~-------------------~~~~y~----~~igv--g~m~~~g~~~l~~~i~~~~----~~i~~~~~~~~~~~~~~~~~ 379 (703)
. |..+|+ .|+++ ++.++.+++.+...+.++. ++++++.|.+
T Consensus 309 fd~~G~~Y~vs~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~~i~~~~~~~---------- 378 (681)
T TIGR00727 309 YDNFGHSYNVTEILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGKLLFNALKDD---------- 378 (681)
T ss_pred hhcCCCccccceeeCCCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcC----------
Confidence 1 233455 35555 5556666788888887765 4555554321
Q ss_pred CCCccccccccchhhhhhhcccCCChhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhccccccccccC
Q 005295 380 NSSPETAKLSYDDQRRTRLFLKDQIPTWFAISGYVAIAIVSIIVLPHIFHQLKCYHVLVIYLFAPTLAFCNAYGCGLTDW 459 (703)
Q Consensus 380 ~~~~~~~~~~~d~~~r~~~~~~~~vP~w~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lai~la~v~~~~~~~~~G~T~~ 459 (703)
+..|.|.|. |++|+|+|+||++++++++++++++++..+..++|||+.++|+++++++.++.+.+.|+||+
T Consensus 379 --------~~~D~h~rl-M~~Y~evP~WWy~~~l~is~~~~~~~v~~~~t~lP~W~~~lal~l~~i~~iP~~~i~a~t~~ 449 (681)
T TIGR00727 379 --------DYPDPHSNL-MKAYKEVPDWWYLAVFLGFFGMGIATVEHWPTETPVWGLFVCLIFNFVFLIPTTILQATTNI 449 (681)
T ss_pred --------CCCChhHHH-hhcCCCCcHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhhhheEeecCC
Confidence 234777776 67899999999999999999999888888888999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccchhcCCChhhHHHHHHhhhhhhHhhHHHH
Q 005295 460 SLASTYGKLAIFTIGAWAGSSHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCV 539 (703)
Q Consensus 460 ~p~~~~g~isqli~g~~~g~~~~~~~anL~~~~i~~~~a~qA~d~~qDLKtG~llga~Pr~qf~aQiiGtivga~v~~~v 539 (703)
++. +++++|++.|++. |++++|||+++++++++.+||.|++||||+|||+|+|||+||.+|++|+++|++|+++|
T Consensus 450 ~~~--ln~l~eli~Gy~~---PG~p~a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl~~~~v~~~v 524 (681)
T TIGR00727 450 SFG--LNVLTEFIVGYAL---PGRPLAMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATIWQIFVQIGV 524 (681)
T ss_pred ccc--hhHHHHHHhhhcc---CCCchHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 965 6799999999999 77799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCC--CCccCCchHHHHHHHHhh-hccCCCCCch---hhHHHHHHHHHHHH---HHHHHHhhhhhhhhh
Q 005295 540 FWLFYKAFDDLGVP--GSEYAAPFAMVYRNMAKL-GVEGFSALPK---NCLLLCYVLFGAAI---VINLIRDSIRKEWAR 610 (703)
Q Consensus 540 ~~l~~~ay~~i~~p--~~~~~aP~a~~~~~~A~~-g~~G~~~lp~---~~~~~~~~~~~~~i---~~~~l~~~~p~~~~~ 610 (703)
++|+.++.+++|+| +++|+||+++++++.|++ |.+|+++++. -+..+.+.++++++ +.++++|++||++.|
T Consensus 525 ~~~~l~~i~~~c~~~~~~~ftcp~~~~~f~asv~Wg~iGP~r~F~~g~~Y~~l~~~fliGa~~pi~~~~~~r~~P~~~~~ 604 (681)
T TIGR00727 525 LNWAIGNIDNFCTADQNAKYTCPNAVVFFNASVIWGVIGPKRIFSHGYIYPGLKWFWLIGACIGIFFWLVWKKWPKFYPR 604 (681)
T ss_pred HHHHHhcCcccCCCCCCCCccCCCccceeehehhhhhcchHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHhcchhhhh
Confidence 99999999999974 478999999999999998 9999866664 13344444444444 677899999998889
Q ss_pred ccchhhhhcc-cccccc---hhHHHHHHHHHHHHHHHhccccccccchhhhhhhhhhhhhhhHHHHH
Q 005295 611 FIPLPMAMAI-PFYLGP---YFAIDMCVGSLLLFIWEKIDKAKADAFGPAVASGLICGDGIWSLPSS 673 (703)
Q Consensus 611 ~ip~~~a~gi-g~~lp~---~~~~~~~iG~l~~~~~~r~~~~~~~~~g~~vAsGLIaGe~l~Gvv~a 673 (703)
++|.|+.++. |+..|. +++.+..+|.+.++++|||++++++||+|+++|||++|++++++++-
T Consensus 605 ~~n~pv~~~~~g~~~~a~~~n~~s~~~vg~~f~~~irr~~~~ww~kYnYvlsAald~G~a~~~~iif 671 (681)
T TIGR00727 605 YLDWPMLFVGTGYIPPATPYNYMYYTSVGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGLVLSAIIIF 671 (681)
T ss_pred hCCccHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHhHhe
Confidence 9998888777 554443 36667789999999999999999999999999999999999999875
No 5
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-88 Score=742.55 Aligned_cols=601 Identities=17% Similarity=0.249 Sum_probs=499.5
Q ss_pred ccccccCCCCCCCCCccchHHHHHHHHHHHHHHHHhhhccceeeccccchHHHHHHHHHHHHHHHHHhhhh---------
Q 005295 42 SVERAFDGKEVPSWRKQLTIRAFVVSFVLSVLFTFIVMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKFLEN--------- 112 (703)
Q Consensus 42 ~~~~~~~~~~~~~~~~~lT~RavvlG~llg~l~~~~N~y~gLk~G~t~~~si~aalls~~i~k~~~r~l~~--------- 112 (703)
.||.+++.+|.|+- |.+|+|+|++|++.++++++.|..+++|.-=..=..+.+++..++++|+|.|.||.
T Consensus 55 EVrl~Vp~tDDptl-Pv~TfRmW~Lg~~~~iv~a~vNqFF~~R~~~lsis~i~aQi~~~PlGklma~~lP~~~~~~~~~~ 133 (761)
T KOG2262|consen 55 EVRLTVPPTDDPTL-PVLTFRMWFLGLISCIVLAFVNQFFSYRYPPLSISAIVAQIATYPLGKLMAKTLPTWKFGLGGRW 133 (761)
T ss_pred hheeecCCCCCCCc-hhHhHHHHHHHHHHHHHHHHHhhhhcccCCCeehHHHHHHHHHHhHHHHHHHhCCceeeecCcce
Confidence 48999999999999 99999999999999999999998877776533335788999999999999999995
Q ss_pred -cccCCCCCCccchHHHHHHHhhccccccccchhhhHHHHHHHhhhhcccccCccccCchhHHHHHHHHHHHHHHhhhcc
Q 005295 113 -SRILRQPFTRQENTVIQTCVVASSGIAFSGGFGSYLLGMSDRIALQSEDTNLGYKNLSLTWIIGFLFVVSFLGLFSVVP 191 (703)
Q Consensus 113 -~~~~~~pft~~EnnivQT~Asa~~~~~~~gg~~~~i~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lGv~faip 191 (703)
+.+||||||+|||+++.+.|+++++-++ +..|....++.++ ...+++..+.+.+..-++|.-+|-.
T Consensus 134 ~fslNPGPFn~KEHvlitIfan~~sg~aY----at~Ii~~~k~fY~---------~~l~f~~~~ll~lttQ~lGyGwAGl 200 (761)
T KOG2262|consen 134 SFSLNPGPFNVKEHVLITIFANIGSGTAY----ATHIITAQKAFYK---------RNLSFGYAFLLVLTTQLLGYGWAGL 200 (761)
T ss_pred EEEeCCCCCcchheeeeehhhhccCcchh----hhHHHHHHHHHHh---------ccccHHHHHHHHHHHHHhcccHhhh
Confidence 2479999999999999999999776655 3445555555432 1234444455445445555555555
Q ss_pred cceeeeecccccccCcchhHHhhhhcCCchhHHHH-HHHHHHHHHHHHHHHHHHHhh-hhhcc----CC-----------
Q 005295 192 LRKVMIIDFKLTYPSGTATAYLINSFHTPEGARLA-KKQVRTLGKFFSFSFLWGFFQ-WFFTA----GD----------- 254 (703)
Q Consensus 192 LRr~lI~~~~L~fP~g~AtA~li~slH~~~g~~~a-~~~~~~l~~~f~~s~~~~~~~-~~~~~----~~----------- 254 (703)
+||++|+|.+|.||+.+.+..|+|+||++|..+.+ ..|.|+|+++|.+||+|++|+ ++++. .+
T Consensus 201 ~Rk~lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~~swvcW~~P~s~~~ 280 (761)
T KOG2262|consen 201 FRKYLVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPILSSFSWVCWIWPSSITA 280 (761)
T ss_pred hHhhccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHHhhhheeeEeccccHHH
Confidence 69999999999999999999999999986554433 345788999999999999984 44431 12
Q ss_pred Cccccccccccccccceeeeeeecc--cccccceecchHHHHHHHHHHHHHHhhhhhhhhcccCcccCCCCCccch----
Q 005295 255 NCGFVSFPTFGLKAYEYRFYFDFSA--IYVGVGMICPYIINISVLLGGILSWGLMWPLIEKRKGDWYSADLSPTSL---- 328 (703)
Q Consensus 255 ~~~~~~~~~~Gl~~~~~~~~~d~Sp--a~~G~G~ivG~~~~~s~f~G~vl~w~il~P~l~~~~~~w~~~~~~~~~~---- 328 (703)
++.++...|+|+.+ +++||+. +|+|+++..|+++.++.++|.++..+|+.|++++ +|.|+..++|..+.
T Consensus 281 ~qi~sg~~GLGi~~----~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~-~n~~~a~~fPI~Ss~lf~ 355 (761)
T KOG2262|consen 281 NQIGSGLTGLGIGP----FTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYW-TNTYDAKYFPIFSSSLFD 355 (761)
T ss_pred HHhccccccccccc----ccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhh-ccceecceeceecCccee
Confidence 23467778888876 8999998 5999999999999999999999999999999998 48887766663321
Q ss_pred -----------------hhhhhhh----hHHHH--HHHHHhhHHHHHHHHHHHH----HHHHHHHHhccCCCCCCcccCC
Q 005295 329 -----------------QGLQGYK----VFISI--ALILGDGLYNFCKVLSRTL----VGLFYQVRTRNASSDLPVAENS 381 (703)
Q Consensus 329 -----------------~~~~~y~----~~igv--g~m~~~g~~~l~~~i~~~~----~~i~~~~~~~~~~~~~~~~~~~ 381 (703)
-|...|+ +|++. ++.++.++.++.+.+.|.+ |+++++.|...+
T Consensus 356 ~tG~sYnvt~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkdiw~~~~~~~~---------- 425 (761)
T KOG2262|consen 356 HTGNSYNVTKILDSKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKDIWQQTKKAFN---------- 425 (761)
T ss_pred cCCcEeceeeeecCccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHHHHHHHHhccc----------
Confidence 1344554 45554 7889999999999998865 788888765532
Q ss_pred CccccccccchhhhhhhcccCCChhHHHHHHHHHHHHHHHHhhhhhhh--hhhHHHHHHHHHHHHHHhhccccccccccC
Q 005295 382 SPETAKLSYDDQRRTRLFLKDQIPTWFAISGYVAIAIVSIIVLPHIFH--QLKCYHVLVIYLFAPTLAFCNAYGCGLTDW 459 (703)
Q Consensus 382 ~~~~~~~~~d~~~r~~~~~~~~vP~w~~~~~~~~~~~l~~~~~~~~~~--~l~~~~~~lai~la~v~~~~~~~~~G~T~~ 459 (703)
+..|.|.|. |++|||||.||+++.+++.+.++++++..+.. |+|||++++|+++++++.++.+...+.||.
T Consensus 426 ------k~~DiHtrl-MkkYKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~AtTNq 498 (761)
T KOG2262|consen 426 ------KKMDIHTRL-MKKYKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQATTNQ 498 (761)
T ss_pred ------cCCCHHHHH-HHHhccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhhccC
Confidence 345788887 66899999999999999999999999888876 899999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccchhcCCChhhHHHHHHhhhhhhHhhHHHH
Q 005295 460 SLASTYGKLAIFTIGAWAGSSHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCV 539 (703)
Q Consensus 460 ~p~~~~g~isqli~g~~~g~~~~~~~anL~~~~i~~~~a~qA~d~~qDLKtG~llga~Pr~qf~aQiiGtivga~v~~~v 539 (703)
+|. +++++|++.||+. |+.++|||++|.+++.+..||..++||||+|||||+|||.||.+|++||+++++|+.+|
T Consensus 499 ~~G--LNiitE~i~Gy~~---PgrPiAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~tivs~~Vn~gv 573 (761)
T KOG2262|consen 499 TPG--LNIITEYIIGYIY---PGRPIANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTIVAGFVNLGV 573 (761)
T ss_pred Ccc--HHHHHHHHHHhhc---CCchHHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHHHhheeeeHHh
Confidence 987 4599999999999 77799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCC--CCCccCCchHHHHHHHHhh-hccCCCCCch---hhHHHHHHHHHHHH---HHHHHHhhhhh-hhh
Q 005295 540 FWLFYKAFDDLGV--PGSEYAAPFAMVYRNMAKL-GVEGFSALPK---NCLLLCYVLFGAAI---VINLIRDSIRK-EWA 609 (703)
Q Consensus 540 ~~l~~~ay~~i~~--p~~~~~aP~a~~~~~~A~~-g~~G~~~lp~---~~~~~~~~~~~~~i---~~~~l~~~~p~-~~~ 609 (703)
.+|+..+++++|+ |+++|+||..++++++|++ |.+|+++++. .+..+.+.|+++++ +++++.+.+|+ +|.
T Consensus 574 ~~W~m~~I~~iC~~~~~s~~TCP~~rvffnASvIWGlIGP~riF~~~g~Y~~l~wFFLiGa~~pv~vw~~~k~fPk~~w~ 653 (761)
T KOG2262|consen 574 AWWLMYSIPNICTTDQNSPWTCPSDRVFFNASVIWGLIGPKRIFGSLGIYPGLNWFFLIGALAPVLVWLLQKKFPKKKWI 653 (761)
T ss_pred HHHHHhcccccccCCCCCCccCCCCceEEeceeeeecccchhhcCCCCccCcchHHHHHHHHhhHHHHHHHHhcchhhhh
Confidence 9999999999996 6678999999999999998 9999888874 23455666655555 67788999987 568
Q ss_pred hccchhhhhccccccc----chhHHHHHHHHHHHHHHHhccccccccchhhhhhhhhhhhhhhHHHHHH-HHHcCCCCC
Q 005295 610 RFIPLPMAMAIPFYLG----PYFAIDMCVGSLLLFIWEKIDKAKADAFGPAVASGLICGDGIWSLPSSI-LALAKVQPP 683 (703)
Q Consensus 610 ~~ip~~~a~gig~~lp----~~~~~~~~iG~l~~~~~~r~~~~~~~~~g~~vAsGLIaGe~l~Gvv~a~-l~~~~v~~~ 683 (703)
+.++.|+-++-.-.+| .+++.++.+|-+.+++.+|++++||+||++++++||.||-+++||++-+ ++.-+++.+
T Consensus 654 ~~i~~pvl~gg~~~mPpat~vny~sw~iv~fifny~i~r~~~~WW~kYNyvLsaaldaG~a~~~vliffcv~~~~~~~~ 732 (761)
T KOG2262|consen 654 KQINPPVLFGGTANMPPATAVNYTSWAIVGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVAFMGVLIFFCVQYPGISLN 732 (761)
T ss_pred hccCcceEecccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccchhHHHhHhhheeccCCCccc
Confidence 8788788666555555 4899999999999999999999999999999999999999999999873 444455544
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.1e-84 Score=706.41 Aligned_cols=565 Identities=22% Similarity=0.330 Sum_probs=425.4
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhhccceeeccccchHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccchHHHHHHHhh
Q 005295 55 WRKQLTIRAFVVSFVLSVLFTFIVMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKFLENSRILRQPFTRQENTVIQTCVVA 134 (703)
Q Consensus 55 ~~~~lT~RavvlG~llg~l~~~~N~y~gLk~G~t~~~si~aalls~~i~k~~~r~l~~~~~~~~pft~~EnnivQT~Asa 134 (703)
..+|+|+|++++|+++++++.++|+|+|||+|+|+++|||++++||+++|.++. +|++|||+|||+|||
T Consensus 11 ~l~elTlr~vIlGilitvi~~aaN~yLGL~vGlT~a~SIPAAVISmavlk~~~~-----------~silENNmVQT~ASA 79 (624)
T COG1297 11 FLPELTLRGVILGILITVIFLAANVYLGLKVGLTFASSIPAAVISMAVLKAFKG-----------SSILENNMVQTQASA 79 (624)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhhheecceehhhhHHHHHHHHHHHHhCc-----------cchhhhHHHHHHHhh
Confidence 348999999999999999999999999999999999999999999999998663 599999999999999
Q ss_pred ccccccccchhhhHHHHHHHhhhhcccccCccccCchhHHHHHHHHHHHHHHhhhcccceeeeecccccccCcchhHHhh
Q 005295 135 SSGIAFSGGFGSYLLGMSDRIALQSEDTNLGYKNLSLTWIIGFLFVVSFLGLFSVVPLRKVMIIDFKLTYPSGTATAYLI 214 (703)
Q Consensus 135 ~~~~~~~gg~~~~i~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lGv~faipLRr~lI~~~~L~fP~g~AtA~li 214 (703)
+++++ +++...+|++.++. +|.++++.+...++.++|++|++|++||||.+|+++|||||||+||||++
T Consensus 80 agtls--a~vIFviPgl~m~g---------~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPeGvAaAEvL 148 (624)
T COG1297 80 AGTLS--AGVIFVLPGLLMLG---------YWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPEGVAAAEVL 148 (624)
T ss_pred hcccc--ccEEEechhHHhhc---------cccCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCCchhHHHHH
Confidence 99987 34667888887765 46778886667778899999999999999999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh---ccCCCccccccccccccccceeeeeeecccccccceecchH
Q 005295 215 NSFHTPEGARLAKKQVRTLGKFFSFSFLWGFFQWFF---TAGDNCGFVSFPTFGLKAYEYRFYFDFSAIYVGVGMICPYI 291 (703)
Q Consensus 215 ~slH~~~g~~~a~~~~~~l~~~f~~s~~~~~~~~~~---~~~~~~~~~~~~~~Gl~~~~~~~~~d~Spa~~G~G~ivG~~ 291 (703)
++..++|++. +. .+-..+....+.+|.++.=-. ..+....++ .|... ..+..++|++++|+||++|++
T Consensus 149 ~~g~~~~gd~-~g--~~~i~~g~~~~~~~~~l~~g~~~~~~~~~~~~~----~~~~~--~~lg~~~S~AliG~GylvGl~ 219 (624)
T COG1297 149 KAGNQREGDA-SG--IKLIALGGALAALYSLLASGLRVIASSLSAAFS----VGRAA--FALGLGLSLALIGAGYLVGLP 219 (624)
T ss_pred HhcCCCCCCc-cc--chhhhhhhHHHHHHHHHhccceeehhhHHHHHH----hcchh--hhhcccccHHHhCceEEecch
Confidence 9986555543 11 223445555555555542100 000000011 11111 146789999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCcccCCCCCcc-chhhhhh-hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Q 005295 292 INISVLLGGILSWGLMWPLIEKRKGDWYSADLSPT-SLQGLQG-YKVFISIALILGDGLYNFCKVLSRTLVGLFYQVRTR 369 (703)
Q Consensus 292 ~~~s~f~G~vl~w~il~P~l~~~~~~w~~~~~~~~-~~~~~~~-y~~~igvg~m~~~g~~~l~~~i~~~~~~i~~~~~~~ 369 (703)
++..||.|..++|++..|++..+ .|.|++.+.. +-+.+|+ ..+|+|+|.|...++|++.+...++.+.++..++..
T Consensus 220 ~~iaml~G~~iaWgvavP~~~~~--~~~p~~~~~~~~a~~vW~s~VrfIGaG~i~i~~~wtl~~l~~pi~~gi~~~f~~~ 297 (624)
T COG1297 220 AGIAMLIGIFIAWGVAVPLLTLI--VPGPSDQEAGVQAWKVWSSKVRFIGAGAIAIAAIWTLISLLGPILRGIKATFESA 297 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--ccCCCchhHHHHHHHHhhheeEEeehhHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 99999999999999999999753 3444322211 1134454 347999999999999999999999999998888765
Q ss_pred cCCCCCCcccCCCccccccccchhhhhhhcccCCChhHHHHHHHHHHHHHHHHhh-hhhh-----hhhhHHHH----HHH
Q 005295 370 NASSDLPVAENSSPETAKLSYDDQRRTRLFLKDQIPTWFAISGYVAIAIVSIIVL-PHIF-----HQLKCYHV----LVI 439 (703)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~d~~~r~~~~~~~~vP~w~~~~~~~~~~~l~~~~~-~~~~-----~~l~~~~~----~la 439 (703)
+.++ +.. .+.|+| +|+|..|....++. ..+.+.+. .+.. ....|..+ +++
T Consensus 298 r~~~--------------~~~-~~~rte----~Dl~~~~~~~~~~~-~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~ 357 (624)
T COG1297 298 RGRR--------------RAG-AVSRTE----RDLPPKLVLLVLLA-TVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIA 357 (624)
T ss_pred hccc--------------ccc-cccchh----hcCChhhHHHHHHH-HHHHHHHHHHhhhccCcccchhhHHHHHHHHHH
Confidence 4210 111 112453 47776664433222 22222221 1111 01234433 444
Q ss_pred HHHHHHHhhccccccccccC--ccchhhhHHHHHHHHHhc---cC----------CCchhHHHHHHHHHHHHHHHHHHHh
Q 005295 440 YLFAPTLAFCNAYGCGLTDW--SLASTYGKLAIFTIGAWA---GS----------SHGGVLAGLAACGVMMNIVSTASDL 504 (703)
Q Consensus 440 i~la~v~~~~~~~~~G~T~~--~p~~~~g~isqli~g~~~---g~----------~~~~~~anL~~~~i~~~~a~qA~d~ 504 (703)
+++.+.++-..+|++|+.+. ||.+++++++++..+.++ |+ ++..+.++++.++++++++++++|+
T Consensus 358 ~v~GflvaAv~gymagLVgSssspiSGi~i~~v~~~~l~~l~~G~~~~~~~~~~~~~~~~~~~~~t~~vv~a~A~is~Dn 437 (624)
T COG1297 358 VVIGFLVAAVCGYMAGLVGSSSSPISGIGILSVTLLSLLILILGQSGGLFIDPLMRKFLVAATLFTASVVAAVAAISNDN 437 (624)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcchHHHHHHHHHHHHHHHhccccccccCcccchhHHHHHHHHHHHHHHHHHhhccc
Confidence 44555555556799999887 466677777777765544 41 2456788999999999999999999
Q ss_pred hhhcccchhcCCChhhHHHHHHhhhhhhHhhHHHHHHHHHHhhccCCCCC---CccCCchHHHHHHHHhhhccCCCCCch
Q 005295 505 TQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPG---SEYAAPFAMVYRNMAKLGVEGFSALPK 581 (703)
Q Consensus 505 ~qDLKtG~llga~Pr~qf~aQiiGtivga~v~~~v~~l~~~ay~~i~~p~---~~~~aP~a~~~~~~A~~g~~G~~~lp~ 581 (703)
+|||||||++|+|||+||++|++|+++|+++..+|+++++++|+.-+.|. .++++||+.+|.+++ +|. +.
T Consensus 438 lQDLKTG~LvgATPwkQqvaliiG~~~~alvi~pvL~ll~~aYgf~ga~~r~~~~l~apqa~lma~ia----~Gv---f~ 510 (624)
T COG1297 438 LQDLKTGYLVGATPWKQQVALIIGCFVGALVIAPVLELLNKAYGFAGAPPRQGMDLAAPQATLMATIA----KGV---FT 510 (624)
T ss_pred hhhhhhCeeecCChHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCcCCCCCCCCCCCcchHHHHHHHHh----ccc---CC
Confidence 99999999999999999999999999999999999999999996444322 239999999998887 664 55
Q ss_pred hhHHHHHHHHHHHHHHH--HHHhhhhhhhhhccchhhhhcccccccchhHHHHHHHHHHHHHHHhccc-------ccccc
Q 005295 582 NCLLLCYVLFGAAIVIN--LIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFIWEKIDK-------AKADA 652 (703)
Q Consensus 582 ~~~~~~~~~~~~~i~~~--~l~~~~p~~~~~~ip~~~a~gig~~lp~~~~~~~~iG~l~~~~~~r~~~-------~~~~~ 652 (703)
+.+.|.+++.+..+.+. .++++.++|+.++.+.++++|+|+|+|+++++++++|++++|.|+|+.+ ++.++
T Consensus 511 ~~lew~mi~~g~~~gi~lI~id~~l~~~~~~~~lpvlAvGvGIylP~s~~ipi~vG~~l~~~v~~~~~~~~~~~~e~~~r 590 (624)
T COG1297 511 GNLEWSMILAGAGIGIVLIGIDERLKGRGGKLRLPVLAVGVGIYLPPSLTIPIFVGGVLRWAVDRKLKKGDERYKERAKR 590 (624)
T ss_pred CCcchHHHHHHHhHhheeeeccHHHhcCCccccccceeeeeeeecChhhchHHHHHHHHHHHHHHhcccccchhhhcccc
Confidence 56666666655555433 4456666677778665999999999999999999999999999998732 34678
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHHcC
Q 005295 653 FGPAVASGLICGDGIWSLPSSILALAK 679 (703)
Q Consensus 653 ~g~~vAsGLIaGe~l~Gvv~a~l~~~~ 679 (703)
.|+++|||||+||+|+||++|.+...+
T Consensus 591 ~gvl~aaGLIvGEsL~gvi~a~ii~~~ 617 (624)
T COG1297 591 IGVLFAAGLIVGESLFGVITALIIVGS 617 (624)
T ss_pred eeEEEeeccccchHHHHHHHHHHheec
Confidence 999999999999999999999887653
No 7
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=96.16 E-value=0.12 Score=61.14 Aligned_cols=132 Identities=20% Similarity=0.388 Sum_probs=74.6
Q ss_pred HHHHHHHHhhhccc-----ceeeee-----cccccccCcchhHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005295 179 FVVSFLGLFSVVPL-----RKVMII-----DFKLTYPSGTATAYLINSFHTPEGARLAKKQVRTLGKFFSFSFLWGFFQW 248 (703)
Q Consensus 179 ~~~g~lGv~faipL-----Rr~lI~-----~~~L~fP~g~AtA~li~slH~~~g~~~a~~~~~~l~~~f~~s~~~~~~~~ 248 (703)
+.+.++|.+.+++. +++.+. +..++-|.....+.+...+-+++. ......+..++..+++..+..|
T Consensus 475 ~iG~~ig~~v~~~v~~l~~~~~~~~~~~~~~~~~~ap~a~~~aav~~g~~~~~~----~~~~~~~~~~~~~G~~~~i~~~ 550 (624)
T PF03169_consen 475 IIGTIIGAFVAVAVMRLLNQAYPCGPDQGDSFSCPAPQAFAWAAVAWGLIGPQR----GLPYSALPWGFLIGAVLPILFW 550 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCccccccCcCcchHHHHHHHHHHHhcCCcc----cchHHHHHHHHHHHHHHHHHHH
Confidence 34455555555443 444444 355677777777788877643211 1123335556666665555444
Q ss_pred hhccCCCccccccccccccccceeeeeeecccccc----cceecchHHHHHHHHHHHHHHhhhhhhhhcccCcccCCCCC
Q 005295 249 FFTAGDNCGFVSFPTFGLKAYEYRFYFDFSAIYVG----VGMICPYIINISVLLGGILSWGLMWPLIEKRKGDWYSADLS 324 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~Gl~~~~~~~~~d~Spa~~G----~G~ivG~~~~~s~f~G~vl~w~il~P~l~~~~~~w~~~~~~ 324 (703)
+... .+| ++..+| .|+..|...+..+++|+++.|++= .+...|.
T Consensus 551 l~~~-------~~P---------------~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~-----~~~~~~~----- 598 (624)
T PF03169_consen 551 LLQR-------KFP---------------SPLAFGGASSIGFYLPSNYTSAIFIGGLFQFYWR-----RRYPKWW----- 598 (624)
T ss_pred HHHh-------hCC---------------hhheeeecccccccchhHHHHHHHHHHHHHHHhh-----hcchhHH-----
Confidence 3210 011 112334 688999999999999999888732 1111221
Q ss_pred ccchhhhhhhhhHHHHHHHHHhhHHHHHH
Q 005295 325 PTSLQGLQGYKVFISIALILGDGLYNFCK 353 (703)
Q Consensus 325 ~~~~~~~~~y~~~igvg~m~~~g~~~l~~ 353 (703)
.+|..-++.|++.++++..+..
T Consensus 599 -------~~y~~~laagl~aG~~l~~li~ 620 (624)
T PF03169_consen 599 -------EKYNYVLAAGLIAGEALMGLII 620 (624)
T ss_pred -------HhHhhHHHHHHHHHHHHHHHHH
Confidence 2244456778999999887654
No 8
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=94.13 E-value=3.8 Score=48.28 Aligned_cols=227 Identities=13% Similarity=0.093 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHhhccccccccccCccchhh--hHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhhhc--
Q 005295 433 CYHVLVIYLFAPTLAFCNAYGCGLTDWSLASTY--GKLAIFTIGAWAGSSHGGVLAGLAACGVMMNIVSTASDLTQDF-- 508 (703)
Q Consensus 433 ~~~~~lai~la~v~~~~~~~~~G~T~~~p~~~~--g~isqli~g~~~g~~~~~~~anL~~~~i~~~~a~qA~d~~qDL-- 508 (703)
+..++++++++.+++..|.|..=.++.++..++ ++++-.++-.+ . +..+.-|.+.-+++.++.+.++ ++--+
T Consensus 4 ~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~-~--~~t~~EnnivQT~asA~~~~ag-~~~~lPA 79 (591)
T TIGR00733 4 VRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAF-R--DRSILENNMVQTAASAAGTLSS-VIFVLPA 79 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHh-c--cCChhHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 455667777777777777666555555554332 12222122211 1 2334555555444444444332 22111
Q ss_pred --ccchhcCCChhhHHHHHHhhhhhhHhhHHHHHHHHHHhhccCCCCCCccCCchHHHHHHHHhhhccCCCCCchhhHHH
Q 005295 509 --KTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLL 586 (703)
Q Consensus 509 --KtG~llga~Pr~qf~aQiiGtivga~v~~~v~~l~~~ay~~i~~p~~~~~aP~a~~~~~~A~~g~~G~~~lp~~~~~~ 586 (703)
..|+.-.-+.++....-+.|.++|.+...+.-+.+... ++++=|..++-..+=..+-+|. .- .....+
T Consensus 80 l~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~--------~~L~fP~G~A~Ae~l~~g~~g~-~~-~~~~~l 149 (591)
T TIGR00733 80 LLMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVE--------SKLPYPEGVACAEVLKAGDKAR-NG-TGAKPI 149 (591)
T ss_pred HHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------CCCCCCCHHHHHHHHHcccccc-ch-hhHHHH
Confidence 12332234567777777888899998888876655322 2355555443221211122221 01 122223
Q ss_pred HHHHHHHHHHHHHHH--hhhhh---hhh-------hc--cchhhhhcccccccchhHHHHHHHHHHHHHH-----Hhc--
Q 005295 587 CYVLFGAAIVINLIR--DSIRK---EWA-------RF--IPLPMAMAIPFYLGPYFAIDMCVGSLLLFIW-----EKI-- 645 (703)
Q Consensus 587 ~~~~~~~~i~~~~l~--~~~p~---~~~-------~~--ip~~~a~gig~~lp~~~~~~~~iG~l~~~~~-----~r~-- 645 (703)
...+.+ +.+..++. +.+|. .|. .+ =++|.-+|.|+..++..+..|+.|++++|.. .++
T Consensus 150 ~~g~~~-s~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~SpalvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~~~ 228 (591)
T TIGR00733 150 AYGGIL-ASIYAFLGSLRVWSGTLSAAKLVGRRALYFGSDLSLALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAKMG 228 (591)
T ss_pred HHHHHH-HHHHHHHHHhccCCchHHHHHhcCCcceEEEecccHHHHcCceeeChHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 322222 22222221 11221 111 11 2457889999999999999999999999842 221
Q ss_pred ccc---ccccchhh-------hhhhhhhhhhhhHHHHHH
Q 005295 646 DKA---KADAFGPA-------VASGLICGDGIWSLPSSI 674 (703)
Q Consensus 646 ~~~---~~~~~g~~-------vAsGLIaGe~l~Gvv~a~ 674 (703)
.+. .++..-.. +..|.++++|+.+++.-.
T Consensus 229 ~~~~~~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~~~ 267 (591)
T TIGR00733 229 SPGDLSALDLAWTIWSTKVRYIGVGAIVVAALWTLLKLR 267 (591)
T ss_pred CCCCccHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHH
Confidence 111 01111111 589999999999988643
No 9
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=59.10 E-value=22 Score=41.07 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=45.6
Q ss_pred CCCCCCCCCccchHHHHHHHHHHHHHHHHhhhccc--eeeccccchHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccch
Q 005295 48 DGKEVPSWRKQLTIRAFVVSFVLSVLFTFIVMKLN--LTTGIIPSLNVSAGLLGFFFVKTWTKFLENSRILRQPFTRQEN 125 (703)
Q Consensus 48 ~~~~~~~~~~~lT~RavvlG~llg~l~~~~N~y~g--Lk~G~t~~~si~aalls~~i~k~~~r~l~~~~~~~~pft~~En 125 (703)
|.++..+.+|.+.-|=+.+=.+-|++.+..=+=.| |..| .-.+++++|.+.-.+--
T Consensus 35 ~~~~~~~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~a-----GP~g~li~y~i~G~~vy----------------- 92 (541)
T COG0833 35 ETQQGGELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQA-----GPAGLLIAYLIIGIMVY----------------- 92 (541)
T ss_pred ccccchhhhhhhhHHHHHHHHhccccccceeeecchhhhcc-----CcHHHHHHHHHHHHHHH-----------------
Confidence 33333356789999988877777776654322222 2222 44588999999876432
Q ss_pred HHHHHHHhhccccccccchh
Q 005295 126 TVIQTCVVASSGIAFSGGFG 145 (703)
Q Consensus 126 nivQT~Asa~~~~~~~gg~~ 145 (703)
.++|..+=-+.-++.+|.|.
T Consensus 93 ~vm~sLGEma~~~P~sGsF~ 112 (541)
T COG0833 93 FVMQSLGELAVFYPVSGSFS 112 (541)
T ss_pred HHHHHHHHHHhhcCCCCchh
Confidence 45555555555666655563
No 10
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=58.59 E-value=49 Score=38.43 Aligned_cols=100 Identities=13% Similarity=0.161 Sum_probs=52.8
Q ss_pred CCCCCccccCCCCCccccccccccccCCCCCCCCCccchHHHHHHHHHHHHHHHHhh----hccceeeccccchHHHHHH
Q 005295 22 HHHDKKDKNEGEGGKEAEEFSVERAFDGKEVPSWRKQLTIRAFVVSFVLSVLFTFIV----MKLNLTTGIIPSLNVSAGL 97 (703)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lT~RavvlG~llg~l~~~~N----~y~gLk~G~t~~~si~aal 97 (703)
+.++..|.++-+...+|+++..|+--|....|..+||+.+-+ +.|+-+++.-...+ |+.||.-| .-++.+
T Consensus 13 ~~~~~~~~~~~~~~v~~~~~d~~~L~~lgYkqef~R~fs~~s-~fg~sFs~~g~~~~i~tsm~~gl~~g-----G~~~~v 86 (550)
T KOG1289|consen 13 KFSDIGQLGVEESDVPEDDSDEELLAELGYKQELKREFSLFS-IFGISFSLMGLLPGIATSMAYGLGSG-----GPPTLV 86 (550)
T ss_pred hccccccCCcccccCccccCCHHHHHHcCCchhhhhhhhHHH-HHHHHHHHhcchhhhhhheeeccccC-----ChHHHH
Confidence 333333333333333333444455555567788888888433 34554444433333 45565533 456677
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCCccchHHHHHHHhhccccccccch
Q 005295 98 LGFFFVKTWTKFLENSRILRQPFTRQENTVIQTCVVASSGIAFSGGF 144 (703)
Q Consensus 98 ls~~i~k~~~r~l~~~~~~~~pft~~EnnivQT~Asa~~~~~~~gg~ 144 (703)
-++-+.-++.- ++--++|=-|.+++.+||+
T Consensus 87 wgwlIa~~~~i-----------------~va~slaEl~Sa~PtsGgL 116 (550)
T KOG1289|consen 87 WGWLIAGFFSI-----------------CVALSLAELCSAMPTSGGL 116 (550)
T ss_pred HHHHHHHHHHH-----------------HHHhHHHHHHhhCCCCCcH
Confidence 77666554332 3334445555678887776
No 11
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=55.26 E-value=37 Score=40.67 Aligned_cols=61 Identities=18% Similarity=0.283 Sum_probs=39.3
Q ss_pred ecccccccceecchHHHHHHH----HHHHHHHhhhhhhhhcccCcccCCCCCccchhhhhhhhhHHHHHHHHHhhHHHHH
Q 005295 277 FSAIYVGVGMICPYIINISVL----LGGILSWGLMWPLIEKRKGDWYSADLSPTSLQGLQGYKVFISIALILGDGLYNFC 352 (703)
Q Consensus 277 ~Spa~~G~G~ivG~~~~~s~f----~G~vl~w~il~P~l~~~~~~w~~~~~~~~~~~~~~~y~~~igvg~m~~~g~~~l~ 352 (703)
.+|..+|.++..|+..+.+++ +|+++.|++.- .+. .| ..-..|..-++.|++.++++..+.
T Consensus 583 ~~~~~~~~~~~lp~~~~~~~~~~~~vG~~~~~~~~r----r~~-~~----------~~~~~y~~~laagL~~G~al~gvi 647 (654)
T TIGR00728 583 NPPVAVGGGGYIPPATAVNYSTWAAVGGFFNYRWRK----NKR-AD----------WKAEKYNYVLAAGLIAGEALAGVI 647 (654)
T ss_pred CHHHhhhhhhccCCcchhhhhHHHHHHHHHHHHHHH----hhh-hh----------hhhhhhHHHHHHHHhhhHHHHHHH
Confidence 455678888899999999999 78777776432 110 00 001224445677888888877654
No 12
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=32.39 E-value=61 Score=40.11 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCCCCccchHHHHHHHhhccccc
Q 005295 95 AGLLGFFFVKTWTKFLENSRILRQPFTRQENTVIQTCVVASSGIA 139 (703)
Q Consensus 95 aalls~~i~k~~~r~l~~~~~~~~pft~~EnnivQT~Asa~~~~~ 139 (703)
.++++|.+.....+. +.-|++.|..+=-|+.+++.+++
T Consensus 945 Isi~SyilV~~at~I-------G~vlGIse~VmGlTfLA~GTSIP 982 (1096)
T TIGR00927 945 IAMFSYLMVWWAHQV-------GETIGISEEIMGLTILAAGTSIP 982 (1096)
T ss_pred HHHHHHHHHHHHHHh-------hhhcCCChhhhhhhhhhhhcccH
Confidence 556666666554432 23367788877666666654443
No 13
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=31.85 E-value=68 Score=35.28 Aligned_cols=18 Identities=11% Similarity=0.290 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhhccc
Q 005295 65 VVSFVLSVLFTFIVMKLN 82 (703)
Q Consensus 65 vlG~llg~l~~~~N~y~g 82 (703)
+++.++|.+++.+.....
T Consensus 247 ~~a~~lgli~~~~~~~~~ 264 (385)
T PF03547_consen 247 LIAIILGLIIGLIPPLRP 264 (385)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 567777777777765443
No 14
>PF05756 S-antigen: S-antigen protein; InterPro: IPR008825 S-antigens are heat stable proteins that are found in the blood of individuals infected with malaria [].
Probab=31.39 E-value=27 Score=29.65 Aligned_cols=42 Identities=31% Similarity=0.494 Sum_probs=28.2
Q ss_pred hccCCCCCCCCCCCCCCccccCCCCCccccccccccccCCCC
Q 005295 10 NGFNSSRNDDGHHHHDKKDKNEGEGGKEAEEFSVERAFDGKE 51 (703)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (703)
+++-.+.|..++.-.|+.+..+|++.+||++.+.|..-|++.
T Consensus 44 ~g~fn~kn~kg~ky~dleee~egenddeedsnsees~ndeen 85 (94)
T PF05756_consen 44 NGFFNEKNGKGQKYEDLEEEKEGENDDEEDSNSEESNNDEEN 85 (94)
T ss_pred hccccccCCCccchhhHHHhccCCCcccccccchhccccccc
Confidence 455556666666667777777888888777666666555544
No 15
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=29.81 E-value=59 Score=22.77 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhh
Q 005295 63 AFVVSFVLSVLFTFIVM 79 (703)
Q Consensus 63 avvlG~llg~l~~~~N~ 79 (703)
+|++|+.+.+.++..|.
T Consensus 5 aWilG~~lA~~~~v~~a 21 (30)
T TIGR02106 5 AWILGTLLACAFGVLNA 21 (30)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78999999999999883
No 16
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=28.93 E-value=1.6e+02 Score=31.18 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhhccceeeccccchHH
Q 005295 67 SFVLSVLFTFIVMKLNLTTGIIPSLNV 93 (703)
Q Consensus 67 G~llg~l~~~~N~y~gLk~G~t~~~si 93 (703)
+.++-..++.=|.--||-+|.....+-
T Consensus 173 ~~~l~~~~~~Hs~~eGl~ig~~~~~~~ 199 (317)
T PF02535_consen 173 ALILLIALSIHSFFEGLAIGAAFSSDS 199 (317)
T ss_pred HHHHHHHHHhhcchhhhhhhcchhhhh
Confidence 444444555555556777775555433
No 17
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=28.70 E-value=86 Score=32.42 Aligned_cols=14 Identities=7% Similarity=0.149 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHH
Q 005295 92 NVSAGLLGFFFVKT 105 (703)
Q Consensus 92 si~aalls~~i~k~ 105 (703)
.+.+.+++++++|.
T Consensus 148 gll~~~~~laivRl 161 (224)
T PF03839_consen 148 GLLGLFFALAIVRL 161 (224)
T ss_pred HHHHHHHHHHHHHH
Confidence 45677778888885
No 18
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=27.83 E-value=68 Score=22.12 Aligned_cols=17 Identities=18% Similarity=0.469 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhhh
Q 005295 63 AFVVSFVLSVLFTFIVM 79 (703)
Q Consensus 63 avvlG~llg~l~~~~N~ 79 (703)
+|++|+.+++.++..|.
T Consensus 5 aWilG~~lA~~~~i~~a 21 (28)
T PF08173_consen 5 AWILGVLLACAFGILNA 21 (28)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68999999999999883
No 19
>PRK14749 hypothetical protein; Provisional
Probab=26.51 E-value=74 Score=22.15 Aligned_cols=17 Identities=18% Similarity=0.391 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhhh
Q 005295 63 AFVVSFVLSVLFTFIVM 79 (703)
Q Consensus 63 avvlG~llg~l~~~~N~ 79 (703)
+|++|+.+.+.++..|.
T Consensus 5 aWiLG~~lAc~f~ilna 21 (30)
T PRK14749 5 LWFVGILLMCSLSTLVL 21 (30)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78999999999999883
No 20
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.65 E-value=56 Score=35.75 Aligned_cols=32 Identities=13% Similarity=0.425 Sum_probs=19.6
Q ss_pred ccCCCh-hHHHHHHHHHHHHHHHHhhhhhhhhh
Q 005295 400 LKDQIP-TWFAISGYVAIAIVSIIVLPHIFHQL 431 (703)
Q Consensus 400 ~~~~vP-~w~~~~~~~~~~~l~~~~~~~~~~~l 431 (703)
.|+..| +|+.+.++++++++++++.+.|+..+
T Consensus 182 ~yep~~~~~~vl~~~fvl~tlaivLFPLWP~~m 214 (372)
T KOG2927|consen 182 IYEPRPLMWQVLGVLFVLVTLAIVLFPLWPRRM 214 (372)
T ss_pred eccCCchhHHHHHHHHHHHHHHHHhcccCcHHH
Confidence 455555 55555556666667777777776443
No 21
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=24.53 E-value=2.2e+02 Score=30.84 Aligned_cols=148 Identities=11% Similarity=0.182 Sum_probs=74.1
Q ss_pred cccchhcCCChhhHHHHHHhhhhhhHh--hHHHHHHHHHHhhccCCCCC-CccCCchHHHHHHHHhhhccCCCCCchhhH
Q 005295 508 FKTGYLTLASPRSMFVSQVIGTAIGCI--VSPCVFWLFYKAFDDLGVPG-SEYAAPFAMVYRNMAKLGVEGFSALPKNCL 584 (703)
Q Consensus 508 LKtG~llga~Pr~qf~aQiiGtivga~--v~~~v~~l~~~ay~~i~~p~-~~~~aP~a~~~~~~A~~g~~G~~~lp~~~~ 584 (703)
.++|...|.||=+ +++++ .|.++|.=+.+.|++-.|.. -.+.+=..-=+.++-.+|+.|..++|+.++
T Consensus 101 i~~g~~~GlS~LA---------iiaA~~nsNggLY~aL~~qyGd~~D~gA~~i~sl~~GPf~TMi~LG~sGlA~ip~~~l 171 (314)
T TIGR00793 101 VEVGFFAGLSTLA---------LVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMVILGTAGIASFEPHVF 171 (314)
T ss_pred ccccceeccHHHH---------HHHHHhCCcHHHHHHHHHHcCCHhhhhhhhhhhhccCcHHHHHHHhhccCCCCCHHHH
Confidence 5678888888764 33444 56888888888886432210 011111111133344457888888888765
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh----hhhhccchhhhhcccccccch-----------hHH-HHHHHHHHHHHHHhcccc
Q 005295 585 LLCYVLFGAAIVINLIRDSIRK----EWARFIPLPMAMAIPFYLGPY-----------FAI-DMCVGSLLLFIWEKIDKA 648 (703)
Q Consensus 585 ~~~~~~~~~~i~~~~l~~~~p~----~~~~~ip~~~a~gig~~lp~~-----------~~~-~~~iG~l~~~~~~r~~~~ 648 (703)
.-.++=+++++++-=+++.+++ ...-.+| -+++++|--+-.+ +.+ ..++.++..++.+|...+
T Consensus 172 v~~ilPlliG~ilGNLD~~~r~fl~~~~~~lIp-Ff~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~~~dr~~~g 250 (314)
T TIGR00793 172 VGAVLPFLVGFALGNLDPELRDFFSKAVQTLIP-FFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLILADKFIGG 250 (314)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHhccCCCeeee-hhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 5555545555554434433322 1122344 3444444322210 001 134556666777776532
Q ss_pred ccccchhhhhhhhhhhhhh
Q 005295 649 KADAFGPAVASGLICGDGI 667 (703)
Q Consensus 649 ~~~~~g~~vAsGLIaGe~l 667 (703)
+... .-.|.|=.||-+.
T Consensus 251 ~~g~--aG~A~sstAGnAv 267 (314)
T TIGR00793 251 GDGT--AGIAASSSAGAAV 267 (314)
T ss_pred CCCc--hhhHHHHHHHHhh
Confidence 2221 2345555666654
No 22
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.01 E-value=1.3e+02 Score=29.83 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=25.1
Q ss_pred eeccccchHHHHHHHHHHHHHHHHHhhhhc
Q 005295 84 TTGIIPSLNVSAGLLGFFFVKTWTKFLENS 113 (703)
Q Consensus 84 k~G~t~~~si~aalls~~i~k~~~r~l~~~ 113 (703)
|-+..+..+-..+++|++++...++.+++.
T Consensus 76 kFal~~TlGnll~i~sf~fLmGP~~ql~~m 105 (175)
T KOG2887|consen 76 KFALLYTLGNLLAIGSFAFLMGPVSQLKHM 105 (175)
T ss_pred eeehhHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 678888888899999999999888776553
No 23
>PF10529 Hist_rich_Ca-bd: Histidine-rich Calcium-binding repeat region; InterPro: IPR019552 This entry represents a histidine-rich calcium-binding repeat which appears in proteins called histidine-rich-calcium binding proteins (HRC). HRC is a high capacity, low affinity Ca2+-binding protein, residing in the lumen of the sarcoplasmic reticulum. HRC binds directly to triadin. This binding interaction occurs between the histidine-rich region of HRC and multiple clusters of charged amino acids, named KEKE motifs, in the lumenal domain of triadin. This repeat is found in the acidic region of the protein, which can be long and variable. There is also a cysteine-rich region further towards the C terminus []. HRC may regulate sarcoplasmic reticular calcium transport, play a critical role in maintaining calcium homeostasis, and function in the heart. HRC is a candidate regulator of sarcoplasmic reticular calcium uptake.
Probab=23.59 E-value=34 Score=20.12 Aligned_cols=10 Identities=30% Similarity=0.318 Sum_probs=6.2
Q ss_pred Cchhhhhhcc
Q 005295 3 QDHDEVENGF 12 (703)
Q Consensus 3 ~~~~~~~~~~ 12 (703)
|+|.|||++.
T Consensus 4 rgH~~eeDed 13 (15)
T PF10529_consen 4 RGHREEEDED 13 (15)
T ss_pred Cccccccccc
Confidence 6676666554
No 24
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=22.96 E-value=50 Score=35.90 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCcc--ccCCCCCcccc
Q 005295 15 SRNDDGHHHHDKKD--KNEGEGGKEAE 39 (703)
Q Consensus 15 ~~~~~~~~~~~~~~--~~~~~~~~~~~ 39 (703)
..++|+....|..| ..++++++|+.
T Consensus 274 ~~~dee~~n~Dd~D~~EeeplnsedDv 300 (348)
T KOG2652|consen 274 PDEDEELGNSDDDDGVEEEPLNSEDDV 300 (348)
T ss_pred cchhhhcccccccCccccccccCcccc
Confidence 33444444444444 44555555433
No 25
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.61 E-value=1.3e+02 Score=33.68 Aligned_cols=32 Identities=9% Similarity=0.069 Sum_probs=17.2
Q ss_pred HHHHHH-HHHhhhhccc--C-CCCCCccchHHHHHH
Q 005295 100 FFFVKT-WTKFLENSRI--L-RQPFTRQENTVIQTC 131 (703)
Q Consensus 100 ~~i~k~-~~r~l~~~~~--~-~~pft~~EnnivQT~ 131 (703)
|...|. ++.-+-..|. | ..|+.++|++-+-+.
T Consensus 139 F~s~~s~le~nFa~vG~~~~~ssp~li~es~t~Fs~ 174 (440)
T KOG2357|consen 139 FGSLRSLLEENFALVGDDGNESSPLLIKESETVFSS 174 (440)
T ss_pred HHHHHHHHHHhhheeCCCCCCCCchhhcccchhHHH
Confidence 555553 3322222343 3 347889998866443
No 26
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=21.61 E-value=1e+02 Score=22.22 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q 005295 63 AFVVSFVLSVLFTFIVM 79 (703)
Q Consensus 63 avvlG~llg~l~~~~N~ 79 (703)
+|++|.++++-|+..|.
T Consensus 5 aWiLG~lLAcAFgiinA 21 (37)
T COG4890 5 AWILGLLLACAFGIINA 21 (37)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78999999999998883
No 27
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=21.59 E-value=1.1e+02 Score=22.73 Aligned_cols=26 Identities=35% Similarity=0.604 Sum_probs=21.8
Q ss_pred HhhhhhhHhhHHHHHHHHHHhhccCC
Q 005295 526 VIGTAIGCIVSPCVFWLFYKAFDDLG 551 (703)
Q Consensus 526 iiGtivga~v~~~v~~l~~~ay~~i~ 551 (703)
+||++.|..+...+=..|+.+|.+.+
T Consensus 12 lVgtv~G~~vi~lvglFfYGsYsGlG 37 (40)
T PF01788_consen 12 LVGTVAGIAVIGLVGLFFYGSYSGLG 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTSTT
T ss_pred HHHHHHHHHHHHHHHHheecccCCcc
Confidence 68999998888888888899997665
No 28
>KOG2736 consensus Presenilin [Signal transduction mechanisms]
Probab=20.84 E-value=98 Score=34.22 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=9.3
Q ss_pred HHHHHHHHHhhhhccc
Q 005295 100 FFFVKTWTKFLENSRI 115 (703)
Q Consensus 100 ~~i~k~~~r~l~~~~~ 115 (703)
..++-.++|++|.+++
T Consensus 361 L~llsv~~kALPALPi 376 (406)
T KOG2736|consen 361 LLLLSVFKKALPALPI 376 (406)
T ss_pred HHHHHHHhhcCcCCch
Confidence 3455556677666553
Done!