Query 005295
Match_columns 703
No_of_seqs 174 out of 822
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 21:14:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_J Photosystem II reaction 23.5 75 0.0026 22.6 3.3 26 526-551 12-37 (40)
2 2kr6_A Presenilin-1; protease, 10.6 3.4E+02 0.012 25.6 5.3 11 58-68 94-104 (176)
3 3h3g_B Parathyroid hormone-rel 6.7 2.1E+02 0.0073 18.1 1.4 18 504-530 3-20 (24)
4 3oux_B LEF-1, lymphoid enhance 6.5 1.4E+02 0.0047 23.6 0.6 11 19-29 24-34 (67)
5 1ots_A Voltage-gated CLC-type 5.9 2.2E+03 0.075 22.7 10.6 47 617-664 138-185 (465)
6 2l2t_A Receptor tyrosine-prote 4.6 4.4E+02 0.015 19.1 2.2 13 635-647 27-39 (44)
7 2zy9_A Mg2+ transporter MGTE; 4.4 6.2E+02 0.021 27.3 4.5 42 57-98 376-422 (473)
8 2k1a_A Integrin alpha-IIB; sin 4.4 8.2E+02 0.028 17.5 3.5 11 402-412 6-16 (42)
9 2ks1_B Epidermal growth factor 4.4 4.6E+02 0.016 19.0 2.2 15 633-647 26-40 (44)
10 2knc_A Integrin alpha-IIB; tra 3.8 8.8E+02 0.03 18.3 3.5 11 402-412 8-18 (54)
No 1
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=23.50 E-value=75 Score=22.56 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=21.8
Q ss_pred HhhhhhhHhhHHHHHHHHHHhhccCC
Q 005295 526 VIGTAIGCIVSPCVFWLFYKAFDDLG 551 (703)
Q Consensus 526 iiGtivga~v~~~v~~l~~~ay~~i~ 551 (703)
++|++.|..+...+=..|+.+|.+.+
T Consensus 12 lvgtv~G~~vi~~~giFfyGsYsGlG 37 (40)
T 3arc_J 12 IVATVAGMGVIVIVGLFFYGAYAGLG 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSTT
T ss_pred eeeeehhhhhhheeeEEEeecccccC
Confidence 58999998888888888899997765
No 2
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=10.57 E-value=3.4e+02 Score=25.60 Aligned_cols=11 Identities=9% Similarity=0.153 Sum_probs=6.5
Q ss_pred cchHHHHHHHH
Q 005295 58 QLTIRAFVVSF 68 (703)
Q Consensus 58 ~lT~RavvlG~ 68 (703)
.+=|.++++|=
T Consensus 94 DFIFYSvLVgk 104 (176)
T 2kr6_A 94 DFIFYSVLVGK 104 (176)
T ss_dssp THHHHHHHHHH
T ss_pred CeeehHHHHHH
Confidence 45566666664
No 3
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=6.73 E-value=2.1e+02 Score=18.08 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=13.3
Q ss_pred hhhhcccchhcCCChhhHHHHHHhhhh
Q 005295 504 LTQDFKTGYLTLASPRSMFVSQVIGTA 530 (703)
Q Consensus 504 ~~qDLKtG~llga~Pr~qf~aQiiGti 530 (703)
-+|||| |.+|.-++++-+
T Consensus 3 s~Q~~r---------Rr~wL~~ll~~v 20 (24)
T 3h3g_B 3 SIQDLR---------RRFFLHHLIAEI 20 (26)
T ss_dssp CHHHHH---------HHHHHHHHHHHH
T ss_pred cHHHHH---------HHHHHHHHHHHh
Confidence 478888 888877777643
No 4
>3oux_B LEF-1, lymphoid enhancer-binding factor 1; WNT/beta-catenin signaling pathway, TCF, transcription phosphorylation, protein binding; 2.40A {Mus musculus} PDB: 3ouw_B
Probab=6.45 E-value=1.4e+02 Score=23.64 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=4.8
Q ss_pred CCCCCCCCccc
Q 005295 19 DGHHHHDKKDK 29 (703)
Q Consensus 19 ~~~~~~~~~~~ 29 (703)
|-+.-.|++|.
T Consensus 24 E~i~FkDEGe~ 34 (67)
T 3oux_B 24 EMIPFKDEGDP 34 (67)
T ss_dssp CCCCCCSCSCT
T ss_pred ceeeccccchh
Confidence 33444454443
No 5
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=5.95 E-value=2.2e+03 Score=22.73 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=23.7
Q ss_pred hhcccccccchhHHHHHHHHHHHHHHHhccc-cccccchhhhhhhhhhh
Q 005295 617 AMAIPFYLGPYFAIDMCVGSLLLFIWEKIDK-AKADAFGPAVASGLICG 664 (703)
Q Consensus 617 a~gig~~lp~~~~~~~~iG~l~~~~~~r~~~-~~~~~~g~~vAsGLIaG 664 (703)
+++-|.-++.+=+ .+-+|+.++..+.|+.+ ++.++.-..+++|.-||
T Consensus 138 ti~sG~s~GrEGP-~vqiGa~ig~~l~~~~~l~~~~~~r~li~~GaaAG 185 (465)
T 1ots_A 138 TLGGGMVLGREGP-TVQIGGNIGRMVLDIFRLKGDEARHTLLATGAAAG 185 (465)
T ss_dssp HHHTTCSCBSHHH-HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcCCcch-HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3344444444322 23466666666655544 22223336777776665
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=4.60 E-value=4.4e+02 Score=19.14 Aligned_cols=13 Identities=8% Similarity=0.008 Sum_probs=6.9
Q ss_pred HHHHHHHHHhccc
Q 005295 635 GSLLLFIWEKIDK 647 (703)
Q Consensus 635 G~l~~~~~~r~~~ 647 (703)
+..+.++||||..
T Consensus 27 ~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 27 GLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHTTCS
T ss_pred HHHHHHHhhhhhh
Confidence 3344556666543
No 7
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=4.39 E-value=6.2e+02 Score=27.27 Aligned_cols=42 Identities=7% Similarity=0.204 Sum_probs=26.6
Q ss_pred ccchHHHHHHHHHHHHHHHHhhh-----ccceeeccccchHHHHHHH
Q 005295 57 KQLTIRAFVVSFVLSVLFTFIVM-----KLNLTTGIIPSLNVSAGLL 98 (703)
Q Consensus 57 ~~lT~RavvlG~llg~l~~~~N~-----y~gLk~G~t~~~si~aall 98 (703)
..+-+|-+.+|+++|.+++..+. +.|..+|.+.+.+++..++
T Consensus 376 ~~~~~ke~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~ 422 (473)
T 2zy9_A 376 RRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVF 422 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45567888888888888777662 2244556566666654433
No 8
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=4.38 E-value=8.2e+02 Score=17.46 Aligned_cols=11 Identities=36% Similarity=1.114 Sum_probs=7.1
Q ss_pred CCChhHHHHHH
Q 005295 402 DQIPTWFAISG 412 (703)
Q Consensus 402 ~~vP~w~~~~~ 412 (703)
..+|.|.++.+
T Consensus 6 ~~vp~wiIi~s 16 (42)
T 2k1a_A 6 RAIPIWWVLVG 16 (42)
T ss_dssp CCCCHHHHHHH
T ss_pred CCcchHHHHHH
Confidence 46788875443
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=4.37 E-value=4.6e+02 Score=18.96 Aligned_cols=15 Identities=7% Similarity=-0.068 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhccc
Q 005295 633 CVGSLLLFIWEKIDK 647 (703)
Q Consensus 633 ~iG~l~~~~~~r~~~ 647 (703)
.++..+.++|+||..
T Consensus 26 ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 26 VVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhhhHh
Confidence 333445566766543
No 10
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=3.83 E-value=8.8e+02 Score=18.29 Aligned_cols=11 Identities=36% Similarity=1.114 Sum_probs=7.0
Q ss_pred CCChhHHHHHH
Q 005295 402 DQIPTWFAISG 412 (703)
Q Consensus 402 ~~vP~w~~~~~ 412 (703)
..+|.|.++.+
T Consensus 8 ~~vp~wiIi~s 18 (54)
T 2knc_A 8 RAIPIWWVLVG 18 (54)
T ss_dssp TTCCHHHHHHH
T ss_pred CCcchHHHHHH
Confidence 35788875543
Done!