Query 005295
Match_columns 703
No_of_seqs 174 out of 822
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 21:15:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005295.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005295hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90l_ f.23.24.1 (L:) PetL su 26.3 12 0.00085 23.0 1.2 21 65-85 7-28 (32)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 23.0 39 0.0029 21.4 3.3 26 526-551 6-31 (34)
3 d1ymga1 f.19.1.1 (A:6-239) Aqu 5.0 8.9E+02 0.065 20.8 11.6 17 523-539 86-102 (234)
4 d2yvxa3 f.57.1.1 (A:276-448) M 3.7 5.5E+02 0.04 21.6 5.2 41 54-94 75-120 (173)
5 d1q90m_ f.23.25.1 (M:) PetM su 3.2 3.4E+02 0.025 16.5 2.1 13 659-671 2-14 (34)
6 d1dq3a3 d.95.2.2 (A:129-226) P 2.7 1.8E+02 0.013 22.0 0.4 9 658-666 14-22 (98)
7 d1fx8a_ f.19.1.1 (A:) Glycerol 2.4 4.9E+02 0.035 23.1 3.5 26 522-547 85-110 (254)
8 d1ny722 b.121.4.2 (2:183-369) 2.4 2.2E+02 0.016 24.7 0.8 16 190-208 9-24 (187)
9 d1gvda_ a.4.1.3 (A:) c-Myb, DN 2.2 3.5E+02 0.025 18.1 1.5 19 116-134 2-20 (52)
10 d1rc2a_ f.19.1.1 (A:) Aquapori 2.1 4.5E+02 0.033 22.8 2.6 19 522-540 85-103 (231)
No 1
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=26.33 E-value=12 Score=23.03 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhhccc-eee
Q 005295 65 VVSFVLSVLFTFIVMKLN-LTT 85 (703)
Q Consensus 65 vlG~llg~l~~~~N~y~g-Lk~ 85 (703)
-+|+++|++.-....|+| ||+
T Consensus 7 yvglligal~~tlgiylgllkv 28 (32)
T d1q90l_ 7 YVGLLIGALVFTLGIYLGLLKV 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999888889998 443
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=23.01 E-value=39 Score=21.36 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=21.6
Q ss_pred HhhhhhhHhhHHHHHHHHHHhhccCC
Q 005295 526 VIGTAIGCIVSPCVFWLFYKAFDDLG 551 (703)
Q Consensus 526 iiGtivga~v~~~v~~l~~~ay~~i~ 551 (703)
++|++.|..+...+=..++.+|.+.+
T Consensus 6 lv~tv~G~~vi~~vG~FfYGsYsGlG 31 (34)
T d2axtj1 6 IVATVAGMGVIVIVGLFFYGAYAGLG 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred EeeehhhhhhHhheeeeeeeeecccc
Confidence 68899998888888888899997665
No 3
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.96 E-value=8.9e+02 Score=20.80 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=13.5
Q ss_pred HHHHhhhhhhHhhHHHH
Q 005295 523 VSQVIGTAIGCIVSPCV 539 (703)
Q Consensus 523 ~aQiiGtivga~v~~~v 539 (703)
++|++|.++|+.+...+
T Consensus 86 ~aQ~lGa~~ga~l~~~~ 102 (234)
T d1ymga1 86 VAQLLGAVAGAAVLYSV 102 (234)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHH
Confidence 79999999999766443
No 4
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=3.66 E-value=5.5e+02 Score=21.64 Aligned_cols=41 Identities=7% Similarity=0.124 Sum_probs=23.9
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhh----hcc-ceeeccccchHHH
Q 005295 54 SWRKQLTIRAFVVSFVLSVLFTFIV----MKL-NLTTGIIPSLNVS 94 (703)
Q Consensus 54 ~~~~~lT~RavvlG~llg~l~~~~N----~y~-gLk~G~t~~~si~ 94 (703)
.+....-.|=+.+|.++|.+++..+ .+. +...+.+.+.++.
T Consensus 75 ~~~~~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~ 120 (173)
T d2yvxa3 75 RDWRRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLV 120 (173)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 3335566677777877777766654 222 2445555555555
No 5
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.19 E-value=3.4e+02 Score=16.46 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=8.8
Q ss_pred hhhhhhhhhhHHH
Q 005295 659 SGLICGDGIWSLP 671 (703)
Q Consensus 659 sGLIaGe~l~Gvv 671 (703)
+|+|||.++.=|-
T Consensus 2 a~fiagta~tmig 14 (34)
T d1q90m_ 2 AEFIAGTALTMVG 14 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CceecchhHHHHH
Confidence 5788888775443
No 6
>d1dq3a3 d.95.2.2 (A:129-226) PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=2.66 E-value=1.8e+02 Score=21.99 Aligned_cols=9 Identities=56% Similarity=1.143 Sum_probs=6.6
Q ss_pred hhhhhhhhh
Q 005295 658 ASGLICGDG 666 (703)
Q Consensus 658 AsGLIaGe~ 666 (703)
-+|+|||+|
T Consensus 14 LAGFIAGdG 22 (98)
T d1dq3a3 14 LAGFIAGDG 22 (98)
T ss_dssp HHHHHHHHE
T ss_pred HHHhhcCCC
Confidence 468888876
No 7
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=2.45 E-value=4.9e+02 Score=23.10 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=19.9
Q ss_pred HHHHHhhhhhhHhhHHHHHHHHHHhh
Q 005295 522 FVSQVIGTAIGCIVSPCVFWLFYKAF 547 (703)
Q Consensus 522 f~aQiiGtivga~v~~~v~~l~~~ay 547 (703)
..+|++|.++|+.+...++.-....+
T Consensus 85 i~aQ~lGa~~ga~l~~~~~~~~~~~~ 110 (254)
T d1fx8a_ 85 IVSQVAGAFCAAALVYGLYYNLFFDF 110 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 45899999999999887766554443
No 8
>d1ny722 b.121.4.2 (2:183-369) Comovirus coat proteins (VP37 and VP23) {CPMV (Cowpea mosaic virus) [TaxId: 12264]}
Probab=2.43 E-value=2.2e+02 Score=24.73 Aligned_cols=16 Identities=50% Similarity=0.877 Sum_probs=13.3
Q ss_pred cccceeeeecccccccCcc
Q 005295 190 VPLRKVMIIDFKLTYPSGT 208 (703)
Q Consensus 190 ipLRr~lI~~~~L~fP~g~ 208 (703)
.||||.| .+|.||.|.
T Consensus 9 ~~l~rwm---G~L~FpQG~ 24 (187)
T d1ny722 9 LPLNRWM---GKLTFPQGV 24 (187)
T ss_dssp EEEEEEE---EEEEECSBS
T ss_pred hhhHHHH---hhccCCCcc
Confidence 4778877 899999996
No 9
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.21 E-value=3.5e+02 Score=18.08 Aligned_cols=19 Identities=21% Similarity=0.482 Sum_probs=13.2
Q ss_pred CCCCCCccchHHHHHHHhh
Q 005295 116 LRQPFTRQENTVIQTCVVA 134 (703)
Q Consensus 116 ~~~pft~~EnnivQT~Asa 134 (703)
..||||+.|-..+.-...-
T Consensus 2 ~rg~WT~eED~~L~~~v~~ 20 (52)
T d1gvda_ 2 IKGPWTKEEDQRLIKLVQK 20 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 4678888888777555443
No 10
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=2.08 E-value=4.5e+02 Score=22.81 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhHhhHHHHH
Q 005295 522 FVSQVIGTAIGCIVSPCVF 540 (703)
Q Consensus 522 f~aQiiGtivga~v~~~v~ 540 (703)
.++|++|.++|+.+...++
T Consensus 85 i~aQ~lGa~~g~~l~~~i~ 103 (231)
T d1rc2a_ 85 VIAQVVGGIVAAALLYLIA 103 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Done!