Query 005296
Match_columns 703
No_of_seqs 351 out of 853
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 21:16:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005296.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005296hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 2.6E-28 9E-33 227.3 13.7 114 114-227 6-121 (130)
2 4i1k_A B3 domain-containing tr 99.7 4.7E-17 1.6E-21 154.6 11.1 98 118-225 45-144 (146)
3 1yel_A AT1G16640; CESG, protei 99.5 4.7E-14 1.6E-18 126.0 10.1 94 119-223 8-101 (104)
4 1vd2_A Protein kinase C, IOTA 94.6 0.071 2.4E-06 46.9 6.9 59 617-678 6-64 (89)
5 1wmh_B Partitioning defective- 94.4 0.095 3.2E-06 45.9 7.0 66 617-686 6-71 (86)
6 1na6_A Ecorii, restriction end 93.9 0.085 2.9E-06 57.4 7.1 92 119-211 18-123 (404)
7 2kkc_A Sequestosome-1; P62, PB 87.4 0.8 2.7E-05 41.2 5.6 38 639-678 42-80 (102)
8 1oey_A P67-PHOX, neutrophil cy 86.6 2.1 7.2E-05 37.2 7.6 71 619-694 7-80 (83)
9 1q1o_A Cell division control p 85.9 0.96 3.3E-05 40.5 5.2 71 617-687 5-85 (98)
10 2ktr_A Sequestosome-1; autopha 84.4 1.6 5.6E-05 40.1 6.1 60 616-678 19-95 (117)
11 2bkf_A Zinc-finger protein NBR 79.0 4.5 0.00016 35.5 6.7 55 619-677 8-62 (87)
12 1wj6_A KIAA0049 protein, RSGI 75.9 4.7 0.00016 36.3 6.0 61 619-685 16-76 (101)
13 1pqs_A Cell division control p 72.4 3.1 0.00011 35.5 3.8 53 635-687 8-64 (77)
14 1oey_J P40-PHOX, neutrophil cy 71.3 4.7 0.00016 36.4 4.8 54 634-693 28-81 (107)
15 3p8d_A Medulloblastoma antigen 40.0 33 0.0011 28.6 4.4 41 326-381 3-43 (67)
16 1mhn_A SurviVal motor neuron p 38.8 28 0.00094 27.5 3.7 29 328-360 2-30 (59)
17 3s6w_A Tudor domain-containing 38.2 27 0.00093 27.0 3.5 28 329-360 1-28 (54)
18 3o27_A Putative uncharacterize 36.3 37 0.0013 28.5 4.1 35 192-226 31-66 (68)
19 4a4f_A SurviVal of motor neuro 35.8 32 0.0011 27.7 3.7 30 327-360 6-35 (64)
20 1e8p_A Endoglucanase, dockerin 33.7 13 0.00043 29.1 0.9 13 662-674 20-32 (46)
21 2jng_A Cullin-7, CUL-7; P53 bi 32.6 38 0.0013 30.6 3.9 68 318-399 10-77 (105)
22 2equ_A PHD finger protein 20-l 29.5 42 0.0014 28.2 3.5 40 327-381 7-46 (74)
23 1g5v_A SurviVal motor neuron p 27.4 51 0.0017 28.6 3.8 30 327-360 8-37 (88)
24 3qii_A PHD finger protein 20; 27.3 65 0.0022 28.1 4.4 40 327-381 19-58 (85)
25 3m7a_A Uncharacterized protein 25.8 91 0.0031 29.2 5.5 46 160-208 84-140 (140)
26 3pnw_C Tudor domain-containing 23.4 73 0.0025 26.7 3.9 29 328-360 16-44 (77)
27 2e63_A KIAA1787 protein; struc 22.8 48 0.0016 31.9 3.0 26 197-222 115-140 (170)
28 2k75_A Uncharacterized protein 21.3 2.1E+02 0.0073 24.9 6.7 46 160-225 40-89 (106)
29 2ldm_A Uncharacterized protein 25.6 22 0.00074 30.7 0.0 40 326-380 3-42 (81)
30 2vb2_X Copper protein, cation 20.2 1E+02 0.0034 26.6 4.2 26 197-222 59-86 (88)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.95 E-value=2.6e-28 Score=227.31 Aligned_cols=114 Identities=30% Similarity=0.491 Sum_probs=103.7
Q ss_pred CCCCcceEEEEecccccCCCCCceEEccccccccCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeeccchhh
Q 005296 114 ETQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWST 193 (703)
Q Consensus 114 ~~~~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yr~~~rr~~LTtGWs~ 193 (703)
...+...+|.|+||+|||+++++|+||+++|+.|||.++..+..+.++|.++|.+|++|+|||+||+++++|+|++||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHH
Confidence 34456789999999999999999999999999999999987666789999999999999999999999999999999999
Q ss_pred hhhccCCCCCCEEEEEEecC--CcEEEEEEEeccCc
Q 005296 194 FVNHKKLVAGDSIVFLRAEN--GDLCVGIRRAKRGI 227 (703)
Q Consensus 194 FV~~K~L~aGD~VvF~R~~~--G~l~VGIRR~~~~~ 227 (703)
||++|+|++||+|+|++.++ +.|+|++||+...+
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 99999999999999999974 57999999998744
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.70 E-value=4.7e-17 Score=154.61 Aligned_cols=98 Identities=23% Similarity=0.307 Sum_probs=86.6
Q ss_pred cceEEEEecccccCCCCCceEEccccccccCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeeccchhhhhhc
Q 005296 118 KPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNH 197 (703)
Q Consensus 118 ~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yr~~~rr~~LTtGWs~FV~~ 197 (703)
...+|.|+||+||+.++..|.||+++++.|||..+ +.+.+.|. |+.|.|+|+|++. ++.|++||..||++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHH
Confidence 34699999999999987789999999999999753 57788888 6999999999974 79999999999999
Q ss_pred cCCCCCCEEEEEEecCC--cEEEEEEEecc
Q 005296 198 KKLVAGDSIVFLRAENG--DLCVGIRRAKR 225 (703)
Q Consensus 198 K~L~aGD~VvF~R~~~G--~l~VGIRR~~~ 225 (703)
++|++||+|+|...++. .+.|.|.|+..
T Consensus 115 n~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp TTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred cCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 99999999999999865 58999998764
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.51 E-value=4.7e-14 Score=125.97 Aligned_cols=94 Identities=23% Similarity=0.406 Sum_probs=81.8
Q ss_pred ceEEEEecccccCCCCCceEEccccccccCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeeccchhhhhhcc
Q 005296 119 PASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHK 198 (703)
Q Consensus 119 ~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yr~~~rr~~LTtGWs~FV~~K 198 (703)
.+.|.|+|+++|.. .+|.||+++++.+.+.+. ..+.++|..|++|++++.+++ .+++|++||..||+++
T Consensus 8 ~p~F~K~l~~~~~~--~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKSS--KSLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHHT--TCEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCcc--ceEECCHHHHHhcCccCC-------CEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHc
Confidence 45899999999944 489999999988655432 478899999999999999874 5789999999999999
Q ss_pred CCCCCCEEEEEEecCCcEEEEEEEe
Q 005296 199 KLVAGDSIVFLRAENGDLCVGIRRA 223 (703)
Q Consensus 199 ~L~aGD~VvF~R~~~G~l~VGIRR~ 223 (703)
+|++||.|+|...++..+.|-|-+.
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECS
T ss_pred CCCCCCEEEEEEcCCCeEEEEEECC
Confidence 9999999999999999999988874
No 4
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=94.63 E-value=0.071 Score=46.88 Aligned_cols=59 Identities=15% Similarity=0.252 Sum_probs=45.1
Q ss_pred ccceEEeecccceeeccccCCCCCHHHHHHHHHhhhCCCCcCcceeEEEEeCCCCEEEcCCC
Q 005296 617 TGHCKVFMESEDVGRTLDLSLLGSYDELYKKLAEMFGIENAETLSHLLYRDVTGAVKHIGDE 678 (703)
Q Consensus 617 ~~~~KV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~i~~~el~~~v~Y~D~eGD~mlvGD~ 678 (703)
..-+|++.+|.-+-=.++. --+|++|+++|.++|.+.. +-.+++-|.|.|||+.-+-.+
T Consensus 6 ~vkvK~~~~gdi~~~~v~~--~i~~~~L~~kv~~~~~~~~-~~~f~lky~DEeGD~itisSd 64 (89)
T 1vd2_A 6 QVRVKAYYRGDIMITHFEP--SISFEGLCNEVRDMCSFDN-EQLFTMKWIDEEGDPCTVSSQ 64 (89)
T ss_dssp CEEEEEESSSCEEEEEECT--TCCHHHHHHHHHHHTTCCS-SCCEEEEECCSSSCCEECCSH
T ss_pred eEEEEEEeCCeEEEEECCC--CCCHHHHHHHHHHHhCCCC-CCeEEEEEECCCCCcccccCH
Confidence 3578999998744334444 4699999999999999863 333688999999998877654
No 5
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=94.38 E-value=0.095 Score=45.93 Aligned_cols=66 Identities=15% Similarity=0.173 Sum_probs=51.4
Q ss_pred ccceEEeecccceeeccccCCCCCHHHHHHHHHhhhCCCCcCcceeEEEEeCCCCEEEcCCCChHHHHhh
Q 005296 617 TGHCKVFMESEDVGRTLDLSLLGSYDELYKKLAEMFGIENAETLSHLLYRDVTGAVKHIGDEPFSDFMKT 686 (703)
Q Consensus 617 ~~~~KV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~i~~~el~~~v~Y~D~eGD~mlvGD~PW~~F~~~ 686 (703)
.-.||..-+.+--=-.+|-+...+|++|+..|+++|.+. +..+.+.|+|.+||++-+-++ ++|.+.
T Consensus 6 ~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~--~~~f~i~Y~D~dGDLlpInnD--dnl~~A 71 (86)
T 1wmh_B 6 IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP--GLDVLLGYTDAHGDLLPLTND--DSLHRA 71 (86)
T ss_dssp EEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT--TCCCEEEEECTTSCEEECCSH--HHHHHH
T ss_pred EEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC--CCCEEEEEECCCCCEeeecCH--HHHHHH
Confidence 345677776654444677777889999999999999974 355789999999999999877 666544
No 6
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=93.94 E-value=0.085 Score=57.39 Aligned_cols=92 Identities=18% Similarity=0.233 Sum_probs=67.9
Q ss_pred ceEEEEecccccCCCC----CceEEccccccccCCCCC-CCCCCCceEEEEE--eCCCCeEEEEEEEeC------CCCce
Q 005296 119 PASFAKTLTQSDANNG----GGFSVPRYCAETIFPRLD-YSADPPVQTILAK--DVHGETWKFRHIYRG------TPRRH 185 (703)
Q Consensus 119 ~~~F~K~LT~SDv~~~----grfsVPk~~Ae~~FP~Ld-~~~~~p~q~L~~~--D~~G~~W~Fr~~yr~------~~rr~ 185 (703)
-..|+|.|++.|++.. .+|.+|+..+..+||.|+ .....|.+.+.+. |...-++.++.+|.+ +...|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 5789999999999865 379999988999999998 3333556666543 444455599999997 44678
Q ss_pred eeccchh-hhhhccCCCCCCEEEEEEe
Q 005296 186 LLTTGWS-TFVNHKKLVAGDSIVFLRA 211 (703)
Q Consensus 186 ~LTtGWs-~FV~~K~L~aGD~VvF~R~ 211 (703)
.||. |. .+.-.....+||.++|-+.
T Consensus 98 RLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEee-cCCCCcccccCCCCCEEEEEEe
Confidence 8873 22 3444577889999999866
No 7
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=87.35 E-value=0.8 Score=41.16 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHhhhC-CCCcCcceeEEEEeCCCCEEEcCCC
Q 005296 639 GSYDELYKKLAEMFG-IENAETLSHLLYRDVTGAVKHIGDE 678 (703)
Q Consensus 639 ~sY~eL~~~L~~MF~-i~~~el~~~v~Y~D~eGD~mlvGD~ 678 (703)
.+|++|+..+.++|. +.+ ..+.+.|.|.|||+.-+.++
T Consensus 42 ~s~~~L~~~V~~lFp~l~~--~~f~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPALRP--GGFQAHYRAERGDLVAFSSD 80 (102)
T ss_dssp CHHHHHHHHHHHHCTTSCS--SCEEEEEECTTCCEEEECSH
T ss_pred ccHHHHHHHHHHHccccCC--CcEEEEEECCCCCEEEecCH
Confidence 589999999999996 443 24789999999999988876
No 8
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=86.59 E-value=2.1 Score=37.18 Aligned_cols=71 Identities=13% Similarity=0.188 Sum_probs=56.9
Q ss_pred ceEEeecccceeeccccCCCCCHHHHHHHHHhhhCCCCcCcceeEEEEe-CCCCEEEcCCCChHHHHhhce--EEEEec
Q 005296 619 HCKVFMESEDVGRTLDLSLLGSYDELYKKLAEMFGIENAETLSHLLYRD-VTGAVKHIGDEPFSDFMKTAR--RLTILM 694 (703)
Q Consensus 619 ~~KV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~i~~~el~~~v~Y~D-~eGD~mlvGD~PW~~F~~~vk--rl~I~~ 694 (703)
-+||+-+ .--+|....=-+|.+|.+.|.+-+.+.+++ .++-|.| .+|.+++.+|+=++.=...|+ ||+++=
T Consensus 7 ~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~~~--~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~~LtL~C 80 (83)
T 1oey_A 7 TLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRLEH--TKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLTLWC 80 (83)
T ss_dssp EEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCGGG--CCEEECCTTCSSCEECCTTTHHHHHTTCBTTEEEEEE
T ss_pred EEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCcce--eEEEeeCCCCCCeeccChHHHHHHHHhccCCcEEEEE
Confidence 4577765 677788888889999999999999987533 3778999 688888999999998887744 777753
No 9
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=85.90 E-value=0.96 Score=40.46 Aligned_cols=71 Identities=13% Similarity=0.212 Sum_probs=51.7
Q ss_pred ccceEEeecccc----ee--eccccCCCCCHHHHHHHHHhhhCCC-CcCc--ceeEEEEeCCCCEEEcCCC-ChHHHHhh
Q 005296 617 TGHCKVFMESED----VG--RTLDLSLLGSYDELYKKLAEMFGIE-NAET--LSHLLYRDVTGAVKHIGDE-PFSDFMKT 686 (703)
Q Consensus 617 ~~~~KV~meG~~----vG--R~vDLs~~~sY~eL~~~L~~MF~i~-~~el--~~~v~Y~D~eGD~mlvGD~-PW~~F~~~ 686 (703)
.-.+||+-++.. ++ |+|=...-=+|++|+.++.+-|++. +.+. ..++-|+|.|||+..++++ =|++=+.+
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~ 84 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEM 84 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHH
Confidence 356788876321 23 6776777788999999999999874 3232 3578899999999887765 67766665
Q ss_pred c
Q 005296 687 A 687 (703)
Q Consensus 687 v 687 (703)
+
T Consensus 85 ~ 85 (98)
T 1q1o_A 85 L 85 (98)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=84.35 E-value=1.6 Score=40.15 Aligned_cols=60 Identities=15% Similarity=0.298 Sum_probs=43.3
Q ss_pred cccceEEeecc-----cceeeccccC-----------CCCCHHHHHHHHHhhh-CCCCcCcceeEEEEeCCCCEEEcCCC
Q 005296 616 ETGHCKVFMES-----EDVGRTLDLS-----------LLGSYDELYKKLAEMF-GIENAETLSHLLYRDVTGAVKHIGDE 678 (703)
Q Consensus 616 ~~~~~KV~meG-----~~vGR~vDLs-----------~~~sY~eL~~~L~~MF-~i~~~el~~~v~Y~D~eGD~mlvGD~ 678 (703)
....+|++..| ..| |.+-|. ...+|++|+..+.++| .+.+ ..+.+.|.|.|||+.-+-.+
T Consensus 19 ~~l~vKayl~~~~~~~~EI-RRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~--~~f~l~YkDEdGDlItISsD 95 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREI-RRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRP--GGFQAHYRAERGDLVAFSSD 95 (117)
T ss_dssp -CEEEEEEEECSSSCEEEE-EEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCS--SCEEEEEECTTCCEEEECSH
T ss_pred ccEEEEEEEecCCCCCCcE-EEEEeccCCCccccccccCCCHHHHHHHHHHHccccCC--CcEEEEEECCCCCEEEecCH
Confidence 35678888864 233 333332 2469999999999999 5554 24789999999999988766
No 11
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=79.01 E-value=4.5 Score=35.47 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=44.0
Q ss_pred ceEEeecccceeeccccCCCCCHHHHHHHHHhhhCCCCcCcceeEEEEeCCCCEEEcCC
Q 005296 619 HCKVFMESEDVGRTLDLSLLGSYDELYKKLAEMFGIENAETLSHLLYRDVTGAVKHIGD 677 (703)
Q Consensus 619 ~~KV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~i~~~el~~~v~Y~D~eGD~mlvGD 677 (703)
-.||.-.|...=--|.-..--++++|...+..+|++.. .+|.|.|.|||-.-|=-
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~~----~~ikY~DEenD~v~i~S 62 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT----IQIKYLDEENEEVSINS 62 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCSS----EEEEEECTTSCEEEECS
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCCc----eEEEEEcCCCCEEEEec
Confidence 35888888765445655557789999999999999986 68999999999887643
No 12
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=75.91 E-value=4.7 Score=36.26 Aligned_cols=61 Identities=10% Similarity=0.113 Sum_probs=47.6
Q ss_pred ceEEeecccceeeccccCCCCCHHHHHHHHHhhhCCCCcCcceeEEEEeCCCCEEEcCCCChHHHHh
Q 005296 619 HCKVFMESEDVGRTLDLSLLGSYDELYKKLAEMFGIENAETLSHLLYRDVTGAVKHIGDEPFSDFMK 685 (703)
Q Consensus 619 ~~KV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~i~~~el~~~v~Y~D~eGD~mlvGD~PW~~F~~ 685 (703)
-.||.-.|+..=--|.-..--++++|...+..+|++.. ++|.|.|.|||-.-|=- ..+|-+
T Consensus 16 ~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~----~~IkY~DEenD~V~i~S--q~E~eE 76 (101)
T 1wj6_A 16 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT----IQIKYLDEENEEVSINS--QGEYEE 76 (101)
T ss_dssp EEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSS----BCCEEECTTSCEECCCS--HHHHHH
T ss_pred EEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCc----eEEEEecCCCCEEEEec--HHHHHH
Confidence 45999989865555755557789999999999999985 58899999999987743 444433
No 13
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=72.40 E-value=3.1 Score=35.51 Aligned_cols=53 Identities=11% Similarity=0.278 Sum_probs=38.4
Q ss_pred cCCCCCHHHHHHHHHhhhCCCC-cC--cceeEEEEeCCCCEEEcCCC-ChHHHHhhc
Q 005296 635 LSLLGSYDELYKKLAEMFGIEN-AE--TLSHLLYRDVTGAVKHIGDE-PFSDFMKTA 687 (703)
Q Consensus 635 Ls~~~sY~eL~~~L~~MF~i~~-~e--l~~~v~Y~D~eGD~mlvGD~-PW~~F~~~v 687 (703)
...-=+|++|+.++.+-|++.. .+ -..++=|+|.|||+..++++ =|++=+.++
T Consensus 8 V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 8 VEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp CTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 3444579999999999999641 11 23578899999999877655 677666654
No 14
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=71.28 E-value=4.7 Score=36.45 Aligned_cols=54 Identities=26% Similarity=0.287 Sum_probs=41.9
Q ss_pred ccCCCCCHHHHHHHHHhhhCCCCcCcceeEEEEeCCCCEEEcCCCChHHHHhhceEEEEe
Q 005296 634 DLSLLGSYDELYKKLAEMFGIENAETLSHLLYRDVTGAVKHIGDEPFSDFMKTARRLTIL 693 (703)
Q Consensus 634 DLs~~~sY~eL~~~L~~MF~i~~~el~~~v~Y~D~eGD~mlvGD~PW~~F~~~vkrl~I~ 693 (703)
||+.--.|++|+....+-|.-+. ..+-|+|.|||+.-+=|+ ++--=|+++-++.
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~D----IaLNYrD~eGDLIrildd--eDv~lmi~~sr~~ 81 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRED----IALNYRDAEGDLVRLLSD--EDVALMVRQARGL 81 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCSS----EEEEEECTTSCEEECCSH--HHHHHHHHHCCCC
T ss_pred ccccCCCHHHHHHHHHHHhcccc----eeeeeecCCCCEEEEcch--HHHHHHHHHhhcC
Confidence 78888899999999999999665 466799999999988776 4444455544443
No 15
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=39.95 E-value=33 Score=28.59 Aligned_cols=41 Identities=7% Similarity=0.221 Sum_probs=32.0
Q ss_pred HhcCcccccEEEEEeecCCCCcceeeeeEEEEeecCCCCCCCCCCccceecccCcc
Q 005296 326 LQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVSDPLYWPDSPWRLLQVTWDEP 381 (703)
Q Consensus 326 ~~~~w~~GmRFkM~fE~EDss~~~w~~GTI~~v~~~dp~~wp~S~WR~L~V~WDe~ 381 (703)
|...|.+|+++--++ + |. +||-++|.+|... ....|..++.
T Consensus 3 ~~~~~~vGd~vmArW-~-D~---~yYpA~I~si~~~----------~~Y~V~F~dG 43 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-S-DC---RFYPAKVTAVNKD----------GTYTVKFYDG 43 (67)
T ss_dssp --CCCCTTCEEEEEC-T-TS---CEEEEEEEEECTT----------SEEEEEETTS
T ss_pred cCcccccCCEEEEEc-C-CC---CEeeEEEEEECCC----------CeEEEEEeCC
Confidence 556899999999999 3 42 7999999999742 4588999983
No 16
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=38.81 E-value=28 Score=27.53 Aligned_cols=29 Identities=17% Similarity=0.415 Sum_probs=23.9
Q ss_pred cCcccccEEEEEeecCCCCcceeeeeEEEEeec
Q 005296 328 IRWCSGMRFKMAFETEDSSRISWFMGTISSVQV 360 (703)
Q Consensus 328 ~~w~~GmRFkM~fE~EDss~~~w~~GTI~~v~~ 360 (703)
..|.+|+.+-..|..+. .||.++|.++..
T Consensus 2 ~~~~~G~~c~A~~s~Dg----~wYrA~I~~i~~ 30 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSEDG----CIYPATIASIDF 30 (59)
T ss_dssp CCCCTTCEEEEECTTTS----CEEEEEEEEEET
T ss_pred CcCCcCCEEEEEECCCC----CEEEEEEEEEcC
Confidence 47999999999995333 699999999964
No 17
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=38.20 E-value=27 Score=26.96 Aligned_cols=28 Identities=7% Similarity=0.330 Sum_probs=22.3
Q ss_pred CcccccEEEEEeecCCCCcceeeeeEEEEeec
Q 005296 329 RWCSGMRFKMAFETEDSSRISWFMGTISSVQV 360 (703)
Q Consensus 329 ~w~~GmRFkM~fE~EDss~~~w~~GTI~~v~~ 360 (703)
.|.+|+..--.|..|. .||.++|.++..
T Consensus 1 ~wk~G~~c~A~~s~Dg----~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN----KFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTTT----EEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCCC----CEEEEEEEEEeC
Confidence 4999999999995444 799999999863
No 18
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=36.26 E-value=37 Score=28.47 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=30.6
Q ss_pred hhhhhccCCCCCCEEEEEEec-CCcEEEEEEEeccC
Q 005296 192 STFVNHKKLVAGDSIVFLRAE-NGDLCVGIRRAKRG 226 (703)
Q Consensus 192 s~FV~~K~L~aGD~VvF~R~~-~G~l~VGIRR~~~~ 226 (703)
..+++.-+|+.||.+...-++ +|++.+..+|-++.
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk~ 66 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKEL 66 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGGG
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhhc
Confidence 589999999999999998875 88899999997654
No 19
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=35.84 E-value=32 Score=27.73 Aligned_cols=30 Identities=10% Similarity=0.304 Sum_probs=25.0
Q ss_pred hcCcccccEEEEEeecCCCCcceeeeeEEEEeec
Q 005296 327 QIRWCSGMRFKMAFETEDSSRISWFMGTISSVQV 360 (703)
Q Consensus 327 ~~~w~~GmRFkM~fE~EDss~~~w~~GTI~~v~~ 360 (703)
...|.+|+.+.-.|..|. .||.++|.++..
T Consensus 6 ~~~~~vGd~c~A~~s~Dg----~wYrA~I~~v~~ 35 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDG----QCYEAEIEEIDE 35 (64)
T ss_dssp SSCCCTTCEEEEECTTTS----SEEEEEEEEEET
T ss_pred CCCCCCCCEEEEEECCCC----CEEEEEEEEEcC
Confidence 468999999999995443 699999999974
No 20
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=33.69 E-value=13 Score=29.12 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=11.2
Q ss_pred eEEEEeCCCCEEE
Q 005296 662 HLLYRDVTGAVKH 674 (703)
Q Consensus 662 ~v~Y~D~eGD~ml 674 (703)
.|+|+|.+|+|=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 5899999999954
No 21
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=32.58 E-value=38 Score=30.64 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=41.9
Q ss_pred ehHHHHHHHhcCcccccEEEEEeecCCCCcceeeeeEEEEeecCCCCCCCCCCccceecccCcccccCCCCccccceeee
Q 005296 318 KASMVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVSDPLYWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVEL 397 (703)
Q Consensus 318 ~~~~y~~A~~~~w~~GmRFkM~fE~EDss~~~w~~GTI~~v~~~dp~~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIE~ 397 (703)
+.+.|-.=++.+.++|||+||.=.-|+-+.. =.|++. ++ .+ .-| ..||.|..... .-.|+==.||+
T Consensus 10 s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~G--D~G~vl-~s-~~--Gl~-----~vQv~W~~~G~---TyWV~~~~~El 75 (105)
T 2jng_A 10 SGNTYALYVRDTLQPGMRVRMLDDYEEISAG--DEGEFR-QS-NN--GVP-----PVQVFWESTGR---TYWVHWHMLEI 75 (105)
T ss_dssp SSHHHHHHHHHHCCTTCEEEECSCBTTBCTT--CEEEEE-EE-CT--TSS-----EEEEEETTTTE---EEEEEGGGEEE
T ss_pred cchhHHHHHHhcCCCccEEeeehhhhhhccC--CceeEE-ec-CC--CCc-----cceeeehhcCc---eEEEEeehhhh
Confidence 4567888888899999999996433433322 257766 32 22 222 79999986652 33344335555
Q ss_pred cc
Q 005296 398 VS 399 (703)
Q Consensus 398 v~ 399 (703)
+.
T Consensus 76 lg 77 (105)
T 2jng_A 76 LG 77 (105)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 22
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.51 E-value=42 Score=28.25 Aligned_cols=40 Identities=8% Similarity=0.240 Sum_probs=30.7
Q ss_pred hcCcccccEEEEEeecCCCCcceeeeeEEEEeecCCCCCCCCCCccceecccCcc
Q 005296 327 QIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVSDPLYWPDSPWRLLQVTWDEP 381 (703)
Q Consensus 327 ~~~w~~GmRFkM~fE~EDss~~~w~~GTI~~v~~~dp~~wp~S~WR~L~V~WDe~ 381 (703)
...|.+|+++.-+|. |. .||.+||.+|.. + ....|..++-
T Consensus 7 ~~~~kvGd~clA~ws-Dg----~~Y~A~I~~v~~-------~---~~~~V~f~Dy 46 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-DC----RYYPAKIEAINK-------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCCTTCEEEEECS-SS----SEEEEEEEEEST-------T---SSEEEEETTS
T ss_pred CCCCCCCCEEEEECC-CC----CEEEEEEEEECC-------C---CEEEEEEecC
Confidence 357999999999996 33 699999999963 1 2467777654
No 23
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=27.38 E-value=51 Score=28.60 Aligned_cols=30 Identities=17% Similarity=0.384 Sum_probs=24.4
Q ss_pred hcCcccccEEEEEeecCCCCcceeeeeEEEEeec
Q 005296 327 QIRWCSGMRFKMAFETEDSSRISWFMGTISSVQV 360 (703)
Q Consensus 327 ~~~w~~GmRFkM~fE~EDss~~~w~~GTI~~v~~ 360 (703)
...|.+|+.+.-.|..+. .||.++|.++..
T Consensus 8 ~~~~kvGd~C~A~ys~Dg----~wYrA~I~~i~~ 37 (88)
T 1g5v_A 8 LQQWKVGDKCSAIWSEDG----CIYPATIASIDF 37 (88)
T ss_dssp -CCCCSSCEEEEECTTTC----CEEEEEEEEEET
T ss_pred cCCCCCCCEEEEEECCCC----CEEEEEEEEecC
Confidence 458999999999995333 699999999964
No 24
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=27.29 E-value=65 Score=28.09 Aligned_cols=40 Identities=8% Similarity=0.204 Sum_probs=31.6
Q ss_pred hcCcccccEEEEEeecCCCCcceeeeeEEEEeecCCCCCCCCCCccceecccCcc
Q 005296 327 QIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVSDPLYWPDSPWRLLQVTWDEP 381 (703)
Q Consensus 327 ~~~w~~GmRFkM~fE~EDss~~~w~~GTI~~v~~~dp~~wp~S~WR~L~V~WDe~ 381 (703)
...|.+|+++--++ + |. +||-++|++|... ..+.|++++.
T Consensus 19 ~~~f~vGd~VlArW-~-D~---~yYPAkI~sV~~~----------~~YtV~F~DG 58 (85)
T 3qii_A 19 SSEFQINEQVLACW-S-DC---RFYPAKVTAVNKD----------GTYTVKFYDG 58 (85)
T ss_dssp --CCCTTCEEEEEC-T-TS---CEEEEEEEEECTT----------SEEEEEETTS
T ss_pred CcccccCCEEEEEe-C-CC---CEeeEEEEEECCC----------CeEEEEEeCC
Confidence 46899999999999 4 42 7999999999742 3588999983
No 25
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=25.77 E-value=91 Score=29.17 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=32.5
Q ss_pred eEEEEEeCCCCeEEEEEEE---------eCCCCceee--ccchhhhhhccCCCCCCEEEE
Q 005296 160 QTILAKDVHGETWKFRHIY---------RGTPRRHLL--TTGWSTFVNHKKLVAGDSIVF 208 (703)
Q Consensus 160 q~L~~~D~~G~~W~Fr~~y---------r~~~rr~~L--TtGWs~FV~~K~L~aGD~VvF 208 (703)
.++.+.|.+|++=....-- ...+-+|+| ..|| +.+.++++||.|.|
T Consensus 84 LDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~---~~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 84 LDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGL---AARLGIKPGDKVEW 140 (140)
T ss_dssp EEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTH---HHHHTCCTTCEEEC
T ss_pred eEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcCh---HHHcCCCCCCEEeC
Confidence 5778888888777665421 112347887 6787 68889999999875
No 26
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=23.40 E-value=73 Score=26.72 Aligned_cols=29 Identities=7% Similarity=0.295 Sum_probs=24.1
Q ss_pred cCcccccEEEEEeecCCCCcceeeeeEEEEeec
Q 005296 328 IRWCSGMRFKMAFETEDSSRISWFMGTISSVQV 360 (703)
Q Consensus 328 ~~w~~GmRFkM~fE~EDss~~~w~~GTI~~v~~ 360 (703)
..|.+|+.+--.|..|. .||.++|.++..
T Consensus 16 ~~~kvGd~C~A~ys~Dg----~wYRA~I~~i~~ 44 (77)
T 3pnw_C 16 KMWKPGDECFALYWEDN----KFYRAEVEALHS 44 (77)
T ss_dssp TTCCTTCEEEEEETTTT----EEEEEEEEEECT
T ss_pred CCCCcCCEEEEEECCCC----CEEEEEEEEEeC
Confidence 37999999999995444 799999999963
No 27
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.82 E-value=48 Score=31.89 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=22.1
Q ss_pred ccCCCCCCEEEEEEecCCcEEEEEEE
Q 005296 197 HKKLVAGDSIVFLRAENGDLCVGIRR 222 (703)
Q Consensus 197 ~K~L~aGD~VvF~R~~~G~l~VGIRR 222 (703)
-..|.+||.|-|++..+|+|.+.|--
T Consensus 115 l~~l~~Gd~ig~~~~~~G~l~~~iNg 140 (170)
T 2e63_A 115 LDQLGEGDRVGVERTVAGELRLWVNG 140 (170)
T ss_dssp GGGCCSSCCEEEEECTTSCEEEEESS
T ss_pred ccccCCCCEEEEEEcCCcEEEEEECC
Confidence 34578999999999999999998743
No 28
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=21.26 E-value=2.1e+02 Score=24.91 Aligned_cols=46 Identities=22% Similarity=0.227 Sum_probs=34.0
Q ss_pred eEEEEEeCCCCeEEEEEEEeCCCCceeeccchhhhhhccCCCCCCEEEEEEec----CCcEEEEEEEecc
Q 005296 160 QTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAE----NGDLCVGIRRAKR 225 (703)
Q Consensus 160 q~L~~~D~~G~~W~Fr~~yr~~~rr~~LTtGWs~FV~~K~L~aGD~VvF~R~~----~G~l~VGIRR~~~ 225 (703)
..+.+.|..| ..++..|+.. |..||+|.+.... +|.+.+-+-|..+
T Consensus 40 ~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~~ 89 (106)
T 2k75_A 40 YQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSSR 89 (106)
T ss_dssp EEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEEEEEEEETTEEEEEECTTSE
T ss_pred EEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEeeEEeEECCEEEEEECCcEE
Confidence 5788999999 6888888642 8899999987442 7777776655444
No 29
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=25.65 E-value=22 Score=30.73 Aligned_cols=40 Identities=8% Similarity=0.256 Sum_probs=31.6
Q ss_pred HhcCcccccEEEEEeecCCCCcceeeeeEEEEeecCCCCCCCCCCccceecccCc
Q 005296 326 LQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVSDPLYWPDSPWRLLQVTWDE 380 (703)
Q Consensus 326 ~~~~w~~GmRFkM~fE~EDss~~~w~~GTI~~v~~~dp~~wp~S~WR~L~V~WDe 380 (703)
|-..|.+|+++--.|. +. .||.+||.+|.. + ....|.-++
T Consensus 3 ~~~~~kvGd~clAkws-Dg----~wY~A~I~~v~~-------~---~~y~V~F~D 42 (81)
T 2ldm_A 3 MSSEFQINEQVLASWS-DS----RFYPAKVTAVNK-------D---GTYTVKFYD 42 (81)
Confidence 5678999999999997 33 799999999863 1 146788887
No 30
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=20.17 E-value=1e+02 Score=26.56 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=17.8
Q ss_pred ccCCCCCCEEEEEEec-CCcEEE-EEEE
Q 005296 197 HKKLVAGDSIVFLRAE-NGDLCV-GIRR 222 (703)
Q Consensus 197 ~K~L~aGD~VvF~R~~-~G~l~V-GIRR 222 (703)
-++|++||.|.|.-.. +|.+.| .|++
T Consensus 59 l~~lk~Gd~V~F~~~~~~~~~~it~i~~ 86 (88)
T 2vb2_X 59 MSEIKTGDKVAFNFVQQGNLSLLQDIKV 86 (88)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEEEEEe
Confidence 4689999999997654 555543 4443
Done!