Query 005297
Match_columns 703
No_of_seqs 364 out of 2128
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 21:14:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005297.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005297hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0317 SpoT Guanosine polypho 100.0 2E-134 4E-139 1146.0 40.3 456 181-682 8-475 (701)
2 PRK10872 relA (p)ppGpp synthet 100.0 3E-130 6E-135 1126.4 39.5 463 183-684 18-498 (743)
3 PRK11092 bifunctional (p)ppGpp 100.0 2E-128 5E-133 1112.7 42.0 459 182-682 4-474 (702)
4 TIGR00691 spoT_relA (p)ppGpp s 100.0 2E-120 4E-125 1048.2 39.7 437 204-683 1-449 (683)
5 KOG1157 Predicted guanosine po 100.0 4E-115 1E-119 917.6 34.2 522 125-684 20-543 (543)
6 PF13328 HD_4: HD domain; PDB: 100.0 3.5E-39 7.6E-44 309.5 5.9 152 204-359 1-153 (153)
7 cd05399 NT_Rel-Spo_like Nucleo 100.0 2.8E-29 6.1E-34 233.9 11.9 119 396-515 2-129 (129)
8 PF04607 RelA_SpoT: Region fou 100.0 1.2E-29 2.5E-34 231.4 7.6 108 417-526 1-114 (115)
9 COG2357 PpGpp synthetase catal 99.9 7.6E-27 1.6E-31 236.2 13.5 114 412-527 52-178 (231)
10 PF02824 TGS: TGS domain; Int 99.4 7E-14 1.5E-18 115.3 0.8 52 603-664 9-60 (60)
11 cd01669 TGS_Ygr210_C TGS_Ygr21 98.9 5.3E-10 1.1E-14 96.8 3.0 54 603-664 23-76 (76)
12 cd01666 TGS_DRG_C TGS_DRG_C: 98.8 2E-09 4.3E-14 93.1 3.4 55 603-664 17-75 (75)
13 cd01668 TGS_RelA_SpoT TGS_RelA 98.3 6.6E-07 1.4E-11 72.1 4.5 52 603-664 9-60 (60)
14 TIGR03276 Phn-HD phosphonate d 98.2 4.7E-06 1E-10 83.2 8.2 71 212-282 13-102 (179)
15 PRK09602 translation-associate 98.0 4.6E-06 1E-10 92.7 4.9 55 603-665 341-395 (396)
16 cd04938 TGS_Obg-like TGS_Obg-l 98.0 4.1E-06 8.9E-11 72.7 3.5 53 603-664 24-76 (76)
17 cd01616 TGS The TGS domain, na 97.6 4.9E-05 1.1E-09 59.5 3.5 52 603-664 9-60 (60)
18 PRK00413 thrS threonyl-tRNA sy 97.2 0.00043 9.3E-09 81.1 6.2 79 603-691 10-97 (638)
19 cd01667 TGS_ThrRS_N TGS _ThrRS 97.2 0.00039 8.5E-09 54.8 3.9 52 603-664 9-60 (61)
20 PRK05659 sulfur carrier protei 96.9 0.0018 4E-08 53.9 5.7 58 595-666 3-63 (66)
21 PRK06437 hypothetical protein; 96.9 0.0019 4.2E-08 54.7 5.7 58 597-666 7-64 (67)
22 cd00565 ThiS ThiaminS ubiquiti 96.9 0.0017 3.7E-08 54.2 5.1 52 603-666 7-62 (65)
23 PRK01777 hypothetical protein; 96.8 0.0036 7.8E-08 56.8 6.6 57 603-664 19-75 (95)
24 PRK06944 sulfur carrier protei 96.5 0.005 1.1E-07 51.1 5.5 52 603-666 8-62 (65)
25 TIGR01683 thiS thiamine biosyn 96.5 0.005 1.1E-07 51.3 5.2 53 603-666 6-61 (64)
26 PRK07440 hypothetical protein; 96.4 0.0071 1.5E-07 51.7 5.6 59 594-666 6-67 (70)
27 PRK08364 sulfur carrier protei 96.2 0.012 2.5E-07 50.2 5.7 52 604-667 17-68 (70)
28 PRK07696 sulfur carrier protei 96.1 0.0088 1.9E-07 50.6 4.9 56 596-666 4-64 (67)
29 PTZ00258 GTP-binding protein; 96.1 0.005 1.1E-07 68.7 4.2 57 603-666 316-388 (390)
30 PRK08053 sulfur carrier protei 96.1 0.014 3E-07 49.1 5.9 58 595-666 3-63 (66)
31 COG2104 ThiS Sulfur transfer p 96.0 0.016 3.4E-07 49.6 5.8 53 603-666 10-65 (68)
32 PRK14707 hypothetical protein; 96.0 0.029 6.2E-07 72.0 10.2 107 414-526 2306-2424(2710)
33 PRK09601 GTP-binding protein Y 95.9 0.005 1.1E-07 68.1 3.0 57 602-664 291-362 (364)
34 PLN02908 threonyl-tRNA synthet 95.6 0.022 4.8E-07 67.9 6.7 88 592-692 52-148 (686)
35 PRK05863 sulfur carrier protei 95.4 0.026 5.7E-07 47.4 4.8 58 595-666 3-62 (65)
36 PRK12444 threonyl-tRNA synthet 95.3 0.028 6.1E-07 66.3 6.4 79 603-691 14-101 (639)
37 PRK06488 sulfur carrier protei 95.2 0.038 8.3E-07 46.1 5.1 55 596-666 4-62 (65)
38 COG1163 DRG Predicted GTPase [ 95.2 0.013 2.8E-07 63.7 2.9 55 603-664 306-364 (365)
39 cd00754 MoaD Ubiquitin domain 94.6 0.029 6.2E-07 47.9 3.0 60 603-666 18-77 (80)
40 PF14451 Ub-Mut7C: Mut7-C ubiq 94.5 0.045 9.8E-07 48.4 4.0 50 604-665 26-76 (81)
41 smart00471 HDc Metal dependent 94.2 0.058 1.2E-06 47.1 4.1 37 220-256 2-44 (124)
42 PRK06083 sulfur carrier protei 94.1 0.096 2.1E-06 46.6 5.3 58 595-666 21-81 (84)
43 PLN02799 Molybdopterin synthas 94.0 0.039 8.5E-07 47.9 2.5 59 603-666 21-79 (82)
44 PF03658 Ub-RnfH: RnfH family 93.7 0.047 1E-06 48.6 2.5 52 603-664 16-72 (84)
45 PRK14707 hypothetical protein; 92.6 1.2 2.7E-05 58.1 13.3 194 323-525 2416-2654(2710)
46 PF02597 ThiS: ThiS family; I 92.5 0.092 2E-06 44.4 2.6 58 603-666 14-74 (77)
47 PF01966 HD: HD domain; Inter 92.1 0.18 3.9E-06 44.7 3.9 33 224-256 2-41 (122)
48 PRK11840 bifunctional sulfur c 92.0 0.24 5.3E-06 54.1 5.6 57 595-665 3-62 (326)
49 TIGR01682 moaD molybdopterin c 90.9 0.33 7.2E-06 42.0 4.2 58 604-666 19-77 (80)
50 TIGR03401 cyanamide_fam HD dom 90.5 1.9 4.2E-05 45.0 10.2 124 196-340 36-180 (228)
51 PRK09169 hypothetical protein; 90.2 0.95 2E-05 59.6 9.1 120 401-526 1902-2034(2316)
52 PRK12703 tRNA 2'-O-methylase; 89.9 2.3 5.1E-05 47.0 10.7 149 200-370 171-332 (339)
53 COG2914 Uncharacterized protei 84.2 3 6.4E-05 38.2 6.1 56 604-664 20-75 (99)
54 TIGR01687 moaD_arch MoaD famil 82.7 2.3 4.9E-05 37.2 4.8 62 604-667 19-86 (88)
55 PRK11130 moaD molybdopterin sy 82.0 1.8 4E-05 37.6 3.9 60 604-666 18-78 (81)
56 TIGR00295 conserved hypothetic 81.0 5.3 0.00011 39.4 7.3 58 220-277 11-86 (164)
57 COG1418 Predicted HD superfami 75.7 4.2 9.1E-05 42.3 5.0 39 219-257 33-76 (222)
58 PRK10119 putative hydrolase; P 75.3 12 0.00026 39.4 8.1 52 200-254 6-62 (231)
59 COG0012 Predicted GTPase, prob 74.3 1.3 2.7E-05 49.5 0.7 47 603-660 320-366 (372)
60 TIGR02988 YaaA_near_RecF S4 do 72.6 3.2 7E-05 33.9 2.6 24 639-662 35-58 (59)
61 PF01479 S4: S4 domain; Inter 72.3 2.2 4.7E-05 33.1 1.5 22 639-660 27-48 (48)
62 cd00077 HDc Metal dependent ph 71.2 3.2 7E-05 36.6 2.5 35 222-256 2-44 (145)
63 COG4341 Predicted HD phosphohy 66.8 6.4 0.00014 39.5 3.7 35 218-252 24-60 (186)
64 COG1977 MoaD Molybdopterin con 64.3 5 0.00011 35.4 2.3 30 636-666 52-81 (84)
65 cd01764 Urm1 Urm1-like ubuitin 62.3 12 0.00027 33.8 4.4 62 605-666 21-91 (94)
66 PRK03826 5'-nucleotidase; Prov 60.8 20 0.00044 36.7 6.2 35 221-255 27-72 (195)
67 TIGR00277 HDIG uncharacterized 57.2 16 0.00036 30.0 4.1 34 221-254 3-41 (80)
68 PF06071 YchF-GTPase_C: Protei 56.9 3.3 7.1E-05 37.1 -0.2 57 602-663 12-82 (84)
69 smart00363 S4 S4 RNA-binding d 56.2 9.2 0.0002 29.3 2.3 26 639-664 27-52 (60)
70 PF13510 Fer2_4: 2Fe-2S iron-s 55.6 13 0.00029 32.6 3.4 63 594-661 5-78 (82)
71 PRK14137 recX recombination re 53.4 15 0.00033 37.6 3.9 105 360-468 37-147 (195)
72 PRK14136 recX recombination re 51.8 12 0.00027 40.9 3.1 93 369-469 168-271 (309)
73 COG1896 Predicted hydrolases o 51.1 35 0.00076 34.9 6.1 99 218-327 29-141 (193)
74 cd08780 Death_TRADD Death Doma 50.7 73 0.0016 29.1 7.2 75 335-411 2-81 (90)
75 COG1078 HD superfamily phospho 48.7 10 0.00022 43.3 1.9 30 224-253 53-96 (421)
76 KOG1637 Threonyl-tRNA syntheta 48.0 10 0.00022 43.6 1.7 84 595-692 4-95 (560)
77 PTZ00305 NADH:ubiquinone oxido 47.5 73 0.0016 34.9 8.0 65 593-661 69-141 (297)
78 PRK00106 hypothetical protein; 47.0 49 0.0011 39.1 7.1 37 219-255 347-388 (535)
79 cd08318 Death_NMPP84 Death dom 46.4 95 0.0021 27.5 7.3 75 333-411 5-79 (86)
80 PF12917 HD_2: HD containing h 45.9 36 0.00078 35.6 5.2 101 221-328 28-143 (215)
81 PRK11507 ribosome-associated p 45.8 17 0.00036 31.6 2.4 25 639-663 38-62 (70)
82 PF13023 HD_3: HD domain; PDB: 45.6 33 0.00071 34.0 4.7 96 220-328 20-129 (165)
83 TIGR03319 YmdA_YtgF conserved 45.1 53 0.0011 38.5 7.0 35 220-254 327-366 (514)
84 PRK12704 phosphodiesterase; Pr 45.1 40 0.00086 39.6 6.0 36 219-254 332-372 (520)
85 PRK12705 hypothetical protein; 45.1 59 0.0013 38.2 7.3 37 219-255 320-361 (508)
86 PF13275 S4_2: S4 domain; PDB: 44.5 11 0.00024 32.2 1.0 24 639-662 34-57 (65)
87 COG1188 Ribosome-associated he 44.0 17 0.00036 33.7 2.2 25 639-664 35-59 (100)
88 TIGR00488 putative HD superfam 43.9 25 0.00054 34.2 3.6 34 221-254 7-45 (158)
89 COG1713 Predicted HD superfami 42.8 26 0.00055 35.9 3.5 37 221-257 16-57 (187)
90 KOG1573 Aldehyde reductase [Ge 42.7 85 0.0018 31.7 7.0 53 200-252 74-127 (204)
91 PF05153 DUF706: Family of unk 42.2 41 0.0009 35.8 5.0 53 200-252 40-93 (253)
92 cd00165 S4 S4/Hsp/ tRNA synthe 42.1 23 0.00049 27.9 2.5 26 639-664 27-52 (70)
93 cd04867 TGS_YchF_C TGS_YchF_C: 41.5 23 0.0005 31.8 2.6 57 603-663 13-82 (83)
94 PRK08493 NADH dehydrogenase su 41.0 82 0.0018 39.1 8.1 79 595-682 4-88 (819)
95 PRK07569 bidirectional hydroge 40.4 1E+02 0.0022 32.2 7.6 79 595-682 6-92 (234)
96 PF00498 FHA: FHA domain; Int 37.3 15 0.00032 30.2 0.7 23 639-662 43-67 (68)
97 COG1710 Uncharacterized protei 36.9 39 0.00085 32.4 3.5 83 366-448 26-124 (139)
98 COG2501 S4-like RNA binding pr 36.8 23 0.0005 31.1 1.9 25 639-663 38-62 (73)
99 COG3383 Uncharacterized anaero 36.4 49 0.0011 40.5 5.0 82 593-682 6-93 (978)
100 PF06744 DUF1215: Protein of u 35.6 32 0.0007 32.3 2.8 44 120-164 75-118 (125)
101 PRK01286 deoxyguanosinetriphos 34.6 41 0.00088 37.4 3.8 32 223-254 63-99 (336)
102 TIGR03812 tyr_de_CO2_Arch tyro 34.3 2E+02 0.0044 30.9 9.1 70 395-464 294-372 (373)
103 COG0079 HisC Histidinol-phosph 34.2 1.9E+02 0.004 32.3 8.9 114 353-466 218-352 (356)
104 PRK07152 nadD putative nicotin 32.8 42 0.00092 36.9 3.6 35 221-255 195-234 (342)
105 PRK12720 secretion system appa 31.5 3.7E+02 0.008 32.9 11.2 195 231-448 451-666 (675)
106 COG2316 Predicted hydrolase (H 31.5 80 0.0017 32.1 4.9 62 220-281 45-121 (212)
107 PRK12792 flhA flagellar biosyn 31.2 1.8E+02 0.004 35.5 8.6 120 239-371 480-609 (694)
108 PF13085 Fer2_3: 2Fe-2S iron-s 30.2 72 0.0016 29.9 4.1 62 604-665 22-92 (110)
109 PF14907 NTP_transf_5: Unchara 29.9 6E+02 0.013 25.8 13.2 106 352-468 11-120 (249)
110 COG1034 NuoG NADH dehydrogenas 29.3 1.1E+02 0.0024 37.3 6.4 79 595-682 4-90 (693)
111 PRK13520 L-tyrosine decarboxyl 28.1 3.4E+02 0.0073 29.1 9.5 71 396-466 290-369 (371)
112 PF07091 FmrO: Ribosomal RNA m 27.6 1.5E+02 0.0033 31.8 6.5 139 332-479 7-166 (251)
113 TIGR01017 rpsD_bact ribosomal 26.3 50 0.0011 33.9 2.6 25 640-664 117-141 (200)
114 PRK13480 3'-5' exoribonuclease 26.1 66 0.0014 35.4 3.6 31 223-253 160-196 (314)
115 PRK05327 rpsD 30S ribosomal pr 26.0 50 0.0011 34.0 2.5 26 640-665 120-145 (203)
116 TIGR00384 dhsB succinate dehyd 25.2 75 0.0016 32.7 3.7 63 604-667 18-89 (220)
117 PF09371 Tex_N: Tex-like prote 24.5 4.9E+02 0.011 26.8 9.3 34 343-376 89-140 (193)
118 CHL00113 rps4 ribosomal protei 24.0 55 0.0012 33.8 2.4 26 639-664 115-140 (201)
119 KOG3220 Similar to bacterial d 24.0 1.7E+02 0.0036 30.8 5.8 38 230-271 17-57 (225)
120 PF00903 Glyoxalase: Glyoxalas 23.6 1.4E+02 0.003 25.9 4.7 55 441-502 73-128 (128)
121 TIGR01399 hrcV type III secret 23.5 2E+02 0.0044 35.0 7.2 128 231-370 455-594 (677)
122 PRK05318 deoxyguanosinetriphos 23.3 60 0.0013 37.2 2.7 57 198-254 29-106 (432)
123 TIGR03069 PS_II_S4 photosystem 23.0 59 0.0013 34.7 2.5 25 639-663 209-233 (257)
124 PRK10885 cca multifunctional t 23.0 1.1E+03 0.024 26.9 12.7 33 222-254 227-259 (409)
125 TIGR00092 GTP-binding protein 22.8 71 0.0015 36.0 3.1 58 602-663 295-365 (368)
126 PRK03007 deoxyguanosinetriphos 22.4 1.4E+02 0.0031 34.3 5.4 58 197-254 40-107 (428)
127 cd08313 Death_TNFR1 Death doma 22.1 1.5E+02 0.0031 26.4 4.3 59 349-411 14-73 (80)
128 TIGR01973 NuoG NADH-quinone ox 20.8 2.6E+02 0.0057 33.1 7.5 75 603-682 6-88 (603)
No 1
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=100.00 E-value=2e-134 Score=1146.00 Aligned_cols=456 Identities=41% Similarity=0.640 Sum_probs=427.5
Q ss_pred HHHHHHHHHHhhCCcchHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhccccccCCCH
Q 005297 181 YAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSY 260 (703)
Q Consensus 181 ~~~~ll~~~~~~~~~~d~~~I~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D~~tIaAALLHDvVEDT~vT~ 260 (703)
.++++++.+..+.+..+.. +.+|+.||.++|.||+|+||+|||.||++||.||+++++|.++++||||||++|||++|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~-l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~vEDt~~t~ 86 (701)
T COG0317 8 ELEELLDSLATYLPPVDIE-LKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTIEDTPVTE 86 (701)
T ss_pred cHHHHHHHHHhcCChHHHH-HHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccCCHHHHHHHHccchHhcCCCCH
Confidence 4567788888888766666 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhcC-CceeehhhhhhhHhhcccccCCCHHHHH
Q 005297 261 DYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQ 339 (703)
Q Consensus 261 eeI~~~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAma-D~RVvLIKLADRLhNMRtL~~~~~ekq~ 339 (703)
++|++.||++|++||+||||++.++++. .....|+|++||||++|. |+||++||||||||||||+..++++||+
T Consensus 87 e~i~~~FG~eVa~LV~GvTkl~~i~~~~-----~~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~~~~ek~~ 161 (701)
T COG0317 87 ELIEEIFGKEVAKLVEGVTKLKKIGQLS-----SEEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKRR 161 (701)
T ss_pred HHHHHHHCHHHHHHHhhHHHhhhhhccC-----ccchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCccCCHHHHH
Confidence 9999999999999999999999984221 123458999999999997 9999999999999999999998899999
Q ss_pred HHHHHHHHHHHHhhhhcCchhHHHHHHhhhhhccCcchhhHHHHHHHhh--hhhhhHHHHHHHHHHHHHhcCCceecccc
Q 005297 340 RFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC--FDEAMVTSAIEKLEQALKDKNISFLVLCG 417 (703)
Q Consensus 340 riA~ETl~IYaPLA~RLGi~~iK~ELEDLafryL~P~~y~~i~~~l~~~--~~e~~i~~v~~~L~~~L~~~gI~~~~V~g 417 (703)
++|+||++|||||||||||+++|||||||||+||+|++|+.|++.|.+. +|++++++++..|++.|.+.||.++ |+|
T Consensus 162 riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e~r~~re~~i~~~~~~l~~~L~~~gi~a~-v~g 240 (701)
T COG0317 162 RIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAGIKAE-VSG 240 (701)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEE-EEc
Confidence 9999999999999999999999999999999999999999999999876 4899999999999999999999996 999
Q ss_pred cccChHHHHHHHhhcCCCCCcccccEEEEEEECCHHHHHHHHHHHHhhccCCCCcccCccCCCCCCCcceeEEEEecCCe
Q 005297 418 RHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGL 497 (703)
Q Consensus 418 R~K~~ySI~~Km~rk~~~~~~I~Dl~giRIIv~~~~DCy~vlgiIh~~f~p~p~r~kDyIa~PK~NGYqSLHt~V~~~~g 497 (703)
|+||+||||+||++|++.|++|+|++||||||++..|||++||+||.+|+|+|+|||||||+||+||||||||||.||.|
T Consensus 241 R~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~~~dCY~~LGiVH~~~kp~PgrFKDYIA~PK~NgYQSlHTtv~gp~g 320 (701)
T COG0317 241 RPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDTIPDCYTALGIVHTLWKPIPGEFDDYIANPKPNGYQSLHTTVIGPEG 320 (701)
T ss_pred CCCcccHHHHHHHHcccChhhhhhheeEEEEECChHHHHHHHHHHHhcCcCCCCccccccccCCCCCCceeEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEeehhhHHHHHhhhhhhcccccCCCCcchhHHHHHHHHHHHHHHHHHhcccCCCCCccCcCCCCCCCCCCCCCC
Q 005297 498 VPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADD 577 (703)
Q Consensus 498 ~~vEIQIRT~~Mh~wAE~G~aahw~YK~~~~~~~~~~~~~~~Wl~~Lle~q~e~~~~~~~~~~~~~~lk~~~~f~~~~~d 577 (703)
.++||||||..||..||+|+||||+||+++. ...+...||++|++||++..| +.||+|.+|.| +| .|
T Consensus 321 ~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~~----~~~~~~~Wlr~lle~q~~~~d----~~ef~e~~k~d-lf----~d 387 (701)
T COG0317 321 KPVEVQIRTKEMHEIAELGVAAHWRYKEGGS----AYEEKIAWLRQLLEWQEESAD----SGEFLEQLKSD-LF----PD 387 (701)
T ss_pred ceEEEEEecHHHHHHHhhhHHHHhHhhcCCc----hhhHHHHHHHHHHHHHHhcCC----cHHHHHHHhhc-cc----Cc
Confidence 9999999999999999999999999999872 446788999999999999877 57899999997 45 48
Q ss_pred CCcccCCCCCCCCCeEEEEEeCCccceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCC
Q 005297 578 CPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMG 657 (703)
Q Consensus 578 ~iyvfTPkg~~~g~vfV~~~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~G 657 (703)
+|||||||| +|++||.||||+||||+||+++| ++|+||||||++|| ++++|+||
T Consensus 388 ~VyvfTPkG----------------~vi~LP~GatplDFAY~vHt~iG---------~~c~gAkVnG~ivp-l~~~Lk~G 441 (701)
T COG0317 388 RVYVFTPKG----------------KVIDLPKGATPLDFAYAVHTDIG---------HRCIGAKVNGRIVP-LTTKLQTG 441 (701)
T ss_pred eEEEECCCC----------------CEEeCCCCCcchhhhhhhhchhc---------ceeeEEEECCEEec-cceecCCC
Confidence 999999995 79999999999999999999986 48999999999996 99999999
Q ss_pred CEEEEeeC---CCCccHH------HHHHHHHHHH
Q 005297 658 DVVELTPA---IPDKSLT------EYREEIQRMY 682 (703)
Q Consensus 658 DvVEIit~---~p~~~l~------~~r~~i~rm~ 682 (703)
|+|||+|. .|+..|+ .+|.+|+++|
T Consensus 442 d~VEIit~k~~~Ps~~Wl~~v~t~kAR~kIr~~~ 475 (701)
T COG0317 442 DQVEIITSKHAGPSRDWLNFVVTSRARAKIRAWF 475 (701)
T ss_pred CEEEEEeCCCCCCCHHHHHHHhhHHHHHHHHHHH
Confidence 99999994 4777796 5799999999
No 2
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=100.00 E-value=2.9e-130 Score=1126.44 Aligned_cols=463 Identities=30% Similarity=0.519 Sum_probs=423.0
Q ss_pred HHHHHHHHhhCCcchHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhccccccCCCHHH
Q 005297 183 KEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 262 (703)
Q Consensus 183 ~~ll~~~~~~~~~~d~~~I~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D~~tIaAALLHDvVEDT~vT~ee 262 (703)
++|+..+..+. ..+.+.|++|+.||.++|.| |+||+|||.||++||.||+++++|.++|+||||||++|||.+|.++
T Consensus 18 ~~l~~~~~~~~-~~~~~~i~~A~~~a~~~H~g--r~sGepyi~Hpl~vA~iLa~~~~D~~ti~AaLLHD~vedt~~t~e~ 94 (743)
T PRK10872 18 DKWIASLGITS-QQSCERLAETWAYCLQQTQG--HPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDV 94 (743)
T ss_pred HHHHHHHHhhh-HHHHHHHHHHHHHHHHhccC--CCCCChhhhhHHHHHHHHHHcCCCHHHHHHHHhhhhHhcCCCCHHH
Confidence 46666666666 67889999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHhhCHHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhcC-CceeehhhhhhhHhhcccccCCCHHHHHHH
Q 005297 263 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRF 341 (703)
Q Consensus 263 I~~~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAma-D~RVvLIKLADRLhNMRtL~~~~~ekq~ri 341 (703)
|++.||++||.||+||||++++....+.........|+|+||||||||+ |+||+||||||||||||||..++++||+++
T Consensus 95 i~~~FG~~Va~lVdgvtKl~~i~~~~~~~~~~~~~~qae~~RKmllam~~DiRVilIKLADRLhnmrTl~~~~~~kq~~i 174 (743)
T PRK10872 95 LRESVGKSIVNLIHGVRDMDAIRQLKATHNDSVSSEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVLA 174 (743)
T ss_pred HHHHHCHHHHHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 9999999999999999999988542211001123459999999999997 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCchhHHHHHHhhhhhccCcchhhHHHHHHHhh--hhhhhHHHHHHHHHHHHHhcCCceecccccc
Q 005297 342 AKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC--FDEAMVTSAIEKLEQALKDKNISFLVLCGRH 419 (703)
Q Consensus 342 A~ETl~IYaPLA~RLGi~~iK~ELEDLafryL~P~~y~~i~~~l~~~--~~e~~i~~v~~~L~~~L~~~gI~~~~V~gR~ 419 (703)
|+||++|||||||||||++||||||||||+||+|++|+.|+++|.++ .|+++++.+++.|++.|++.||.++ |+||+
T Consensus 175 A~ETl~IyAPlA~RLGi~~iK~ELEDL~f~~l~P~~Y~~i~~~l~~~~~~r~~~i~~~~~~l~~~L~~~~i~~~-v~gR~ 253 (743)
T PRK10872 175 AKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPDEYKRIAKLLHERRIDREHYIEEFVGHLRAEMKAEGVKAE-VYGRP 253 (743)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEeec
Confidence 99999999999999999999999999999999999999999999876 4889999999999999999999995 99999
Q ss_pred cChHHHHHHHhhcCCCCCcccccEEEEEEECCHHHHHHHHHHHHhhccCCCCcccCccCCCCCCCcceeEEEEecCCeee
Q 005297 420 KSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVP 499 (703)
Q Consensus 420 K~~ySI~~Km~rk~~~~~~I~Dl~giRIIv~~~~DCy~vlgiIh~~f~p~p~r~kDyIa~PK~NGYqSLHt~V~~~~g~~ 499 (703)
||+||||+||++|+.+|++|+|++|+||||+++.|||++||+||++|+|+|++|||||++||+||||||||+|.+|+|.+
T Consensus 254 K~~ySI~~Km~~k~~~~~~i~Di~a~RIIv~~~~dCY~vLg~ih~~~~pip~~fkDYIa~PK~NGYqSLHttv~~~~g~~ 333 (743)
T PRK10872 254 KHIYSIWRKMQKKSLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKT 333 (743)
T ss_pred CCHHHHHHHHHHcCCCHHHhccceeEEEEECCHHHHHHHHHHHHhhccCCcchhhhcccCCCCCCcceeEEEEECCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeehhhHHHHHhhhhhhcccccCCCC--cchhHHHHHHHHHHHHHHHHHhcccCCCCCccCcCCCCCCCCCCCCCC
Q 005297 500 LEVQIRTKEMHLQAEFGFAAHWRYKEGDCQ--HSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADD 577 (703)
Q Consensus 500 vEIQIRT~~Mh~wAE~G~aahw~YK~~~~~--~~~~~~~~~~Wl~~Lle~q~e~~~~~~~~~~~~~~lk~~~~f~~~~~d 577 (703)
+||||||..||.+||+|+||||+||++... .....+++++||++|++||++..+ +.+|++.+|.| +| .|
T Consensus 334 vEVQIRT~~Mh~~AE~GvAAHW~YKeg~~~~~~~~~~~~~~~wLr~lle~~~~~~d----~~ef~e~~k~d-l~----~d 404 (743)
T PRK10872 334 VEIQIRTRQMHEDAELGVAAHWKYKEGAAAGGGRSGHEDRIAWLRKLIAWQEEMAD----SGEMLDEVRSQ-VF----DD 404 (743)
T ss_pred EEEEEEcHHHHHHHhhhHHHHHhccCCCCccccccchHHHHHHHHHHHHHHhccCC----HHHHHHHHHHH-hc----CC
Confidence 999999999999999999999999987532 112345678999999999988654 57899999976 44 37
Q ss_pred CCcccCCCCCCCCCeEEEEEeCCccceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCC
Q 005297 578 CPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMG 657 (703)
Q Consensus 578 ~iyvfTPkg~~~g~vfV~~~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~G 657 (703)
+||||||+| +++.||+||||+||||+||+++|. +|+||||||++|| ++++|++|
T Consensus 405 ~V~VfTPkG----------------~~~~Lp~gaT~lDfAy~iHt~iG~---------~~~gAkvng~~v~-l~~~L~~G 458 (743)
T PRK10872 405 RVYVFTPKG----------------DVVDLPAGSTPLDFAYHIHSDVGH---------RCIGAKIGGRIVP-FTYQLQMG 458 (743)
T ss_pred eEEEECCCC----------------CeEEcCCCCcHHHHHHHHhHHHHh---------hceEEEECCEECC-CCcCCCCC
Confidence 899999995 699999999999999999999764 8999999999996 99999999
Q ss_pred CEEEEeeC---CCCccHHH----------HHHHHHHHHHc
Q 005297 658 DVVELTPA---IPDKSLTE----------YREEIQRMYER 684 (703)
Q Consensus 658 DvVEIit~---~p~~~l~~----------~r~~i~rm~~~ 684 (703)
|+|||+|. .|+..|+. +|.+|+++|..
T Consensus 459 D~VeIits~~~~Ps~dWL~~~lg~v~T~rAR~kIr~~~k~ 498 (743)
T PRK10872 459 DQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRK 498 (743)
T ss_pred CEEEEEeCCCCCCChhHhccccCeeeCHHHHHHHHHHHHH
Confidence 99999994 47888964 79999999943
No 3
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=100.00 E-value=2.1e-128 Score=1112.68 Aligned_cols=459 Identities=36% Similarity=0.559 Sum_probs=425.9
Q ss_pred HHHHHHHHHhhCCcchHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhccccccCCCHH
Q 005297 182 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYD 261 (703)
Q Consensus 182 ~~~ll~~~~~~~~~~d~~~I~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D~~tIaAALLHDvVEDT~vT~e 261 (703)
+++|+..+..+++..+.+++++|+.||.++|.||+|++|+||+.||++||.||+++++|.++++||||||++|||++|.+
T Consensus 4 ~~~l~~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~ti~AaLLHDvvEDt~~t~e 83 (702)
T PRK11092 4 FESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMRLDYETLMAALLHDVIEDTPATYQ 83 (702)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccCCcCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHhcccchhhhCCCCHH
Confidence 45777778888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCHHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhcC-CceeehhhhhhhHhhcccccCCCHHHHHH
Q 005297 262 YIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQR 340 (703)
Q Consensus 262 eI~~~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAma-D~RVvLIKLADRLhNMRtL~~~~~ekq~r 340 (703)
+|++.||++|+.||+||||++.++.. ..+..|+|++||||++|+ |+||++|||||||||||+|..+++++|++
T Consensus 84 ~i~~~FG~~Va~lV~gvTk~~~l~~~------~~~~~q~e~~rkmllam~~DiRVvlIKLADRlhNmrtL~~~~~ek~~~ 157 (702)
T PRK11092 84 DMEQLFGKSVAELVEGVSKLDKLKFR------DKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRR 157 (702)
T ss_pred HHHHHHCHHHHHHHHHHHhhcccccc------chhhHHHHHHHHHHHHhcCCCceEEEEHHHHHhhHHHHHhcCccHHHH
Confidence 99999999999999999999887531 123458999999999997 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCchhHHHHHHhhhhhccCcchhhHHHHHHHhh--hhhhhHHHHHHHHHHHHHhcCCceeccccc
Q 005297 341 FAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC--FDEAMVTSAIEKLEQALKDKNISFLVLCGR 418 (703)
Q Consensus 341 iA~ETl~IYaPLA~RLGi~~iK~ELEDLafryL~P~~y~~i~~~l~~~--~~e~~i~~v~~~L~~~L~~~gI~~~~V~gR 418 (703)
+|+||++||||||+||||++||||||||||+||+|++|+.|++.|.+. .|+++++.+++.|++.|++.||.++ |+||
T Consensus 158 iA~ETl~iyaPlA~rlGi~~ik~eLedL~f~~l~P~~y~~i~~~~~~~~~~r~~~i~~~~~~l~~~l~~~~i~~~-i~~R 236 (702)
T PRK11092 158 IARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCR-VSGR 236 (702)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEE-EEec
Confidence 999999999999999999999999999999999999999999999876 4889999999999999999999995 9999
Q ss_pred ccChHHHHHHHhhcCCCCCcccccEEEEEEECCHHHHHHHHHHHHhhccCCCCcccCccCCCCCCCcceeEEEEecCCee
Q 005297 419 HKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLV 498 (703)
Q Consensus 419 ~K~~ySI~~Km~rk~~~~~~I~Dl~giRIIv~~~~DCy~vlgiIh~~f~p~p~r~kDyIa~PK~NGYqSLHt~V~~~~g~ 498 (703)
.||+||||+||++|+.+|++|+|++|+||||++..|||++||+||++|+|+|++|||||++||+||||||||+|.+|+|.
T Consensus 237 ~K~~ySI~~Km~~k~~~~~~i~Di~a~Riiv~~~~dCY~~lg~ih~~~~pip~~~kDyIa~PK~NgYqSLHt~v~g~~g~ 316 (702)
T PRK11092 237 EKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVDDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGV 316 (702)
T ss_pred cCCHHHHHHHHHHcCCChhHhccceeEEEEECCHHHHHHHHHHHHhcCCCCcCccccccCCCCCCCCceEEEEEECCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeehhhHHHHHhhhhhhcccccCCCCcchhHHHHHHHHHHHHHHHHHhcccCCCCCccCcCCCCCCCCCCCCCCC
Q 005297 499 PLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDC 578 (703)
Q Consensus 499 ~vEIQIRT~~Mh~wAE~G~aahw~YK~~~~~~~~~~~~~~~Wl~~Lle~q~e~~~~~~~~~~~~~~lk~~~~f~~~~~d~ 578 (703)
++||||||..||.+||+|+||||+||++.........+.++||++|++||++..+ +.+|++.+|.| +| +|+
T Consensus 317 ~vEvQIRT~~Mh~~Ae~GvaAhW~yK~~~~~~~~~~~~~~~wlr~ll~~~~~~~~----~~ef~~~~~~d-l~----~d~ 387 (702)
T PRK11092 317 PVEVQIRTEDMDQMAEMGVAAHWAYKEHGETGTTAQIRAQRWMQSLLELQQSAGS----SFEFIESVKSD-LF----PDE 387 (702)
T ss_pred EEEEEEEcHHHHHHHhhhhHhhhhhccCCCccchhHHHHHHHHHHHHHHHhhcCC----hHHHHHHHHhh-hc----cce
Confidence 9999999999999999999999999987432122233448999999999988654 56899999986 44 489
Q ss_pred CcccCCCCCCCCCeEEEEEeCCccceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCC
Q 005297 579 PFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGD 658 (703)
Q Consensus 579 iyvfTPkg~~~g~vfV~~~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GD 658 (703)
|||||||| ++++||+||||+||||+||+++| ++|+||||||++|| |+|+|++||
T Consensus 388 v~VfTP~G----------------~v~~LP~GaT~lDFAY~iHt~iG---------~~c~gAkVNg~~vp-L~~~L~~Gd 441 (702)
T PRK11092 388 IYVFTPEG----------------RIVELPAGATPVDFAYAVHTDIG---------HACVGARVDRQPYP-LSQPLTSGQ 441 (702)
T ss_pred EEEECCCC----------------CEEeCCCCCchhhhhHhhCchhh---------ceeEEEEECCEECC-CCccCCCCC
Confidence 99999995 79999999999999999999986 48999999999996 999999999
Q ss_pred EEEEeeC---CCCccHH------HHHHHHHHHH
Q 005297 659 VVELTPA---IPDKSLT------EYREEIQRMY 682 (703)
Q Consensus 659 vVEIit~---~p~~~l~------~~r~~i~rm~ 682 (703)
+|||+|. .|+..|+ .+|.+|+++|
T Consensus 442 ~VeIiT~~~~~P~~dWL~~v~T~rAr~kIr~~~ 474 (702)
T PRK11092 442 TVEIITAPGARPNAAWLNFVVSSKARAKIRQLL 474 (702)
T ss_pred EEEEEeCCCCCCChHHHHHhhhHHHHHHHHHHH
Confidence 9999993 4888896 6799999998
No 4
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=100.00 E-value=1.8e-120 Score=1048.18 Aligned_cols=437 Identities=41% Similarity=0.655 Sum_probs=407.5
Q ss_pred HHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhccccccCCCHHHHHHhhCHHHHHHHHHhhcccc
Q 005297 204 AFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 283 (703)
Q Consensus 204 A~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D~~tIaAALLHDvVEDT~vT~eeI~~~FG~eVA~LV~gVTKl~~ 283 (703)
|+.||.++|.||+|++|+||+.||++||.+|+++++|.++++||||||++|||++|.++|++.||++|+.||++|||++.
T Consensus 1 A~~~A~~aH~gQ~rksg~PYi~Hpl~VA~iL~~~~~D~~~i~AaLLHDvvEDt~~t~e~i~~~FG~~Va~lV~~vTk~~~ 80 (683)
T TIGR00691 1 ALEIAKDLHEGQKRKSGEPYIIHPLAVALILAELGMDEETVCAALLHDVIEDTPVTEEEIEEEFGEEVAELVDGVTKITK 80 (683)
T ss_pred CHHHHHHhcccCcCCCCCcHHHHHHHHHHHHHHhCCCHHHHHHHhccchHhcCCCCHHHHHHHHCHHHHHHHHHHHHhcc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhHhhccccchHHHHHHHHHHHhhcC-CceeehhhhhhhHhhcccccCCCHHHHHHHHHHHHHHHHHhhhhcCchhHH
Q 005297 284 LSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWK 362 (703)
Q Consensus 284 l~~~~r~~~~~~~~~qaE~lRkmLLAma-D~RVvLIKLADRLhNMRtL~~~~~ekq~riA~ETl~IYaPLA~RLGi~~iK 362 (703)
++... ++..|++++||||++|. |+||++|||||||||||+|..+++++|+++|+||++||||||+||||++||
T Consensus 81 ~~~~~------~~~~q~e~~rkmlla~~~d~rvvlVKLADrlhNmrtl~~~~~~k~~~iA~Et~~iyaPlA~rLG~~~ik 154 (683)
T TIGR00691 81 LKKKS------RQELQAENFRKMILAMAQDIRVIVIKLADRLHNMRTLDFLPPEKQKRIAKETLEIYAPLAHRLGMSSIK 154 (683)
T ss_pred cccch------hhHHHHHHHHHHHHhhcCCcceEeeeHHHHHhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 75421 23458999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCcchhhHHHHHHHhh--hhhhhHHHHHHHHHHHHHhcCCceecccccccChHHHHHHHhhcCCCCCccc
Q 005297 363 VQLENLCFKHLNPDQHTELSSKLVEC--FDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIH 440 (703)
Q Consensus 363 ~ELEDLafryL~P~~y~~i~~~l~~~--~~e~~i~~v~~~L~~~L~~~gI~~~~V~gR~K~~ySI~~Km~rk~~~~~~I~ 440 (703)
||||||||+||+|++|+.|++.|.+. .++.+++.+++.|++.|.+.||.+. |+||+|++||||+||++|+.+|++|+
T Consensus 155 ~eLedl~f~~l~p~~y~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~-i~~R~K~~~Si~~Km~~k~~~~~~i~ 233 (683)
T TIGR00691 155 TELEDLSFKYLYPKEYENIKSLVNEQKVNRENKLEKFKSELEKRLEDSGIEAE-LEGRSKHLYSIYQKMTRKGQNFDEIH 233 (683)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEeeeCCHHHHHHHHHhcCCCHHHcc
Confidence 99999999999999999999999876 4889999999999999999999985 99999999999999999999999999
Q ss_pred ccEEEEEEECCHHHHHHHHHHHHhhccCCCCcccCccCCCCCCCcceeEEEEecCCeeeEEEEEeehhhHHHHHhhhhhh
Q 005297 441 DIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAH 520 (703)
Q Consensus 441 Dl~giRIIv~~~~DCy~vlgiIh~~f~p~p~r~kDyIa~PK~NGYqSLHt~V~~~~g~~vEIQIRT~~Mh~wAE~G~aah 520 (703)
|++|+||||+++.|||+++|+||++|+|+|++|||||++||+||||||||+|.+|+|.++||||||..||.|||+|+|||
T Consensus 234 Di~~~RIi~~~~~dcy~vlg~ih~~~~p~~~~~kDyIa~PK~nGYqSlHt~v~~~~g~~~EvQIRT~~mh~~Ae~Gvaah 313 (683)
T TIGR00691 234 DLLAIRIIVKSELDCYRVLGIIHLLFKPIPGRFKDYIASPKENGYQSLHTTVRGPKGLPVEIQIRTEDMDRVAEYGIAAH 313 (683)
T ss_pred cceeEEEEECCHHHHHHHHHHHHhcCCCCcccccccccCCCCCCcceeEEEEEcCCCCEEEEEEEehHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcchhHHHHHHHHHHHHHHHHHhcccCCCCCccCcCCCCCCCCCCCCCCCCcccCCCCCCCCCeEEEEEeCC
Q 005297 521 WRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIEND 600 (703)
Q Consensus 521 w~YK~~~~~~~~~~~~~~~Wl~~Lle~q~e~~~~~~~~~~~~~~lk~~~~f~~~~~d~iyvfTPkg~~~g~vfV~~~~g~ 600 (703)
|+||++... .....+.+.||++|++||++..+ +.+|++.+|.| +| .++||||||||
T Consensus 314 w~yk~~~~~-~~~~~~~~~wl~~~~~~~~~~~~----~~~~~~~~k~~-l~----~~~i~vfTPkG-------------- 369 (683)
T TIGR00691 314 WIYKEGNPQ-KEALIDDMRWLNYLVEWQQESAN----FFEFIENLKSD-LF----NEEIYVFTPKG-------------- 369 (683)
T ss_pred HhhcCCCCc-chhHHHHHHHHHHHHHHHhhccc----chhHHHHhhHH-hc----cCceEEECCCC--------------
Confidence 999987432 22245678999999999988655 56889999976 34 48899999995
Q ss_pred ccceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeC---CCCccHH-----
Q 005297 601 KMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPA---IPDKSLT----- 672 (703)
Q Consensus 601 ~~~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~---~p~~~l~----- 672 (703)
+++.||+||||+||||+||+++|. +|+||||||++|| ++++|++||+|||+|. .|+.+|+
T Consensus 370 --~~~~lp~gst~~DfAy~ih~~~g~---------~~~~a~vng~~v~-l~~~l~~gd~vei~t~~~~~P~~dWL~~v~T 437 (683)
T TIGR00691 370 --DVVELPSGSTPVDFAYAVHTDVGN---------KCTGAKVNGKIVP-LDKELENGDVVEIITGKNSNPSVIWLNFVVT 437 (683)
T ss_pred --eEEEcCCCCCHHHHHHHHhHHhHh---------ceeEEEECCEECC-CCccCCCCCEEEEEeCCCCCCCHHHHHHHhh
Confidence 799999999999999999999764 7999999999996 9999999999999994 4888895
Q ss_pred -HHHHHHHHHHH
Q 005297 673 -EYREEIQRMYE 683 (703)
Q Consensus 673 -~~r~~i~rm~~ 683 (703)
.+|.+|+++|.
T Consensus 438 ~rAR~kIr~~~k 449 (683)
T TIGR00691 438 SKARNKIRQWLK 449 (683)
T ss_pred HHHHHHHHHHHH
Confidence 57899988883
No 5
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-115 Score=917.64 Aligned_cols=522 Identities=69% Similarity=1.056 Sum_probs=490.5
Q ss_pred hhhhhhhhhccccccCCCCcccccCCcccccCCchhhhhh-hhhhcccccccccHHHHHHHHHHHHHhhCCcchHHHHHH
Q 005297 125 FNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDE-LTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIK 203 (703)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~f~~~~~~~~~~~ll~~~~~~~~~~d~~~I~k 203 (703)
||||||.+.|+||||+.. |+|.+| +.|.|+ ...+.++.+++++..+..++.++.+++.+
T Consensus 20 ~~~~~rKae~~~v~~E~~----------------s~l~~ea~~~~me----ve~~~~~~r~~eR~~~~~~~t~~s~lv~K 79 (543)
T KOG1157|consen 20 FNGFVRKAEGSCVDYEMD----------------SVLVDEALGFKME----VELVGPYARDLERRAQLWHKTFSSELVIK 79 (543)
T ss_pred hcccCccccccccccccc----------------ccccccccCCcee----eeehhhhhhhhhhhhhhhhhcCcHHHHHH
Confidence 999999999999999932 334566 788884 44566788999999999999999999999
Q ss_pred HHHHHHHHhcCCccccC-cchhHHHHHHHHHHHHhCCCHHHHHHHHhhccccccCCCHHHHHHhhCHHHHHHHHHhhccc
Q 005297 204 AFYEAERAHRGQMRASG-DPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLS 282 (703)
Q Consensus 204 A~~~A~~aH~GQ~RksG-ePYI~Hpl~VA~ILa~lg~D~~tIaAALLHDvVEDT~vT~eeI~~~FG~eVA~LV~gVTKl~ 282 (703)
|+.+|+.+|+||+|+++ +||+.||+.+|.||+++++|+.+++||+||||||||.+++++|++.||.+|+.||++||+++
T Consensus 80 Al~~Aa~~HR~Q~Rad~~rPY~nH~i~ta~iLAd~~~ds~Vv~AaiLHDVVDDt~~S~eeI~~~FG~gVa~LV~EvtddK 159 (543)
T KOG1157|consen 80 ALYEAAKAHRGQMRADDDRPYLNHCIETAMILADIGADSTVVVAAILHDVVDDTFMSYEEILRHFGTGVADLVEEVTDDK 159 (543)
T ss_pred HHHHHHHHHhcccccCCCCchhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhhccCCHHHHHHHhCccHHHHHHHHhccc
Confidence 99999999999999965 49999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHhhccccchHHHHHHHHHHHhhcCCceeehhhhhhhHhhcccccCCCHHHHHHHHHHHHHHHHHhhhhcCchhHH
Q 005297 283 QLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWK 362 (703)
Q Consensus 283 ~l~~~~r~~~~~~~~~qaE~lRkmLLAmaD~RVvLIKLADRLhNMRtL~~~~~ekq~riA~ETl~IYaPLA~RLGi~~iK 362 (703)
.+++..|.+. .|.+.++ |++++++.||+||||||||||||+|..+||-+|+++++|++.||+|+|+++|++.++
T Consensus 160 nL~K~eRk~l-----~qiet~~-~fyak~s~RAvLIkLADKLdNMRdL~~lpPvgwq~~r~e~lfIwapla~~~g~gtn~ 233 (543)
T KOG1157|consen 160 NLSKLERKNL-----TQIETVE-MFYAKASARAVLIKLADKLDNMRDLYALPPVGWQRFRKETLFIWAPLANRLGIGTNK 233 (543)
T ss_pred chhHHHHHHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhHHHHHHHHHHhhHHHHHhcccchH
Confidence 9998776543 3677776 778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCcchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCceecccccccChHHHHHHHhhcCCCCCccccc
Q 005297 363 VQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDI 442 (703)
Q Consensus 363 ~ELEDLafryL~P~~y~~i~~~l~~~~~e~~i~~v~~~L~~~L~~~gI~~~~V~gR~K~~ySI~~Km~rk~~~~~~I~Dl 442 (703)
.+||+|||+|++|.+|.++..+|+..+++.+|+..++.|++.|..+||.++.|+||.|+.||||+||.|+++..++|+|+
T Consensus 234 ~lle~Ldf~~l~p~~~~~m~s~l~~~~~~~mi~~~~~~l~~~l~~a~i~~~~i~gr~ks~ysi~~kmlk~~~~~dei~di 313 (543)
T KOG1157|consen 234 VLLENLDFKHLFPCQHIEMSSMLEDSFDEAMITSAIEKLEQALKKAGISYHVIKGRHKSLYSIYKKMLKKKLTPDEIHDI 313 (543)
T ss_pred HHHhhhhHHHhCchhHHHHHHHHhcccchHHHHHHHHHHHHHHHhccceeEEEecchhhHHHHHHHHHhcCCCHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred EEEEEEECCHHHHHHHHHHHHhhccCCCCcccCccCCCCCCCcceeEEEEecCCeeeEEEEEeehhhHHHHHhhhhhhcc
Q 005297 443 YGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWR 522 (703)
Q Consensus 443 ~giRIIv~~~~DCy~vlgiIh~~f~p~p~r~kDyIa~PK~NGYqSLHt~V~~~~g~~vEIQIRT~~Mh~wAE~G~aahw~ 522 (703)
.|+|+||.++.|||+++|+||.+|+.+|++.||||+.||.||||||||+|++.+-+|+||||||..||..||+|.|+||+
T Consensus 314 ~glr~i~~~~~~cyk~~~vv~slw~evp~k~kdyia~pk~ngy~slh~~v~~d~~~plevqirt~em~~~a~~g~aah~~ 393 (543)
T KOG1157|consen 314 HGLRLIVDNESDCYKALGVVHSLWSEVPGKLKDYIAHPKFNGYQSLHTVVMVDGTRPLEVQIRTMEMHLQAEFGFAAHWR 393 (543)
T ss_pred cceEEEEcCchHHHHHHHHHHHHHHhCcchhhhhhcCccccccceeeeEEecCCcceeEEEEeeeccccccccchhhHhh
Confidence 99999999999999999999999999999999999999999999999999987778999999999999999999999999
Q ss_pred cccCCCCcchhHHHHHHHHHHHHHHHHHhcccCCCCCccCcCCCCCCCCCCCCCCCCcccCCCCCCCCCeEEEEEeCCcc
Q 005297 523 YKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKM 602 (703)
Q Consensus 523 YK~~~~~~~~~~~~~~~Wl~~Lle~q~e~~~~~~~~~~~~~~lk~~~~f~~~~~d~iyvfTPkg~~~g~vfV~~~~g~~~ 602 (703)
||+|. .++++.++++|++|...|..+++.++.++... .+|.||.|++||+|+|.|+++++||+||+++++++|
T Consensus 394 yk~g~--~~~~~~q~~~~~~~~~~~~~~~~~kd~ss~~~-----~~~k~~s~~~d~~f~~~~~~~~~~~~~~~~ie~e~m 466 (543)
T KOG1157|consen 394 YKEGK--TSSFVLQMVEWARWVVTWHAEIMSKDISSIKS-----SSCKFPSHQEDCPFSYKPKNGQGGPVYVIVIENEKM 466 (543)
T ss_pred hhcCC--CCHHHHHHHHHHHHHHHHHHHHHhcccccccc-----cccCCCCccccCceeecCCCCCCCceEEEEeecccc
Confidence 99984 46789999999999999999999877554322 348899999999999999999999999999999999
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCCCccHHHHHHHHHHHH
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMY 682 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~p~~~l~~~r~~i~rm~ 682 (703)
-+.++|+.+|+.|+--+-|++.++|.+|+.++ +.++.+.|. ++.++|++||+||.+|.+|+.+|++||++|||||
T Consensus 467 ~~~~~~e~~~~~d~~s~~~~~s~~~~~~~~~~-e~lr~~~~~----d~~~k~~m~d~~~~~p~~~~~~l~e~~~~~~~m~ 541 (543)
T KOG1157|consen 467 GVQEFPEMSTVSDLLSRAGPGSSRWSMYQIPA-EELRPRLNQ----DLKYKLKMGDVVELTPHIPDTSLTEYREEIQRMY 541 (543)
T ss_pred CCCCCchhhhHHHhhccCCCCccchhhhcCcH-HHhhhhhcc----chhHHhhhcchhhcCCCCCChhHHHHHHHHHHhh
Confidence 99999999999999999999999999999887 889999998 5789999999999999999999999999999999
Q ss_pred Hc
Q 005297 683 ER 684 (703)
Q Consensus 683 ~~ 684 (703)
+|
T Consensus 542 ~~ 543 (543)
T KOG1157|consen 542 DR 543 (543)
T ss_pred cC
Confidence 75
No 6
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=100.00 E-value=3.5e-39 Score=309.50 Aligned_cols=152 Identities=49% Similarity=0.727 Sum_probs=98.5
Q ss_pred HHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhccccccCCCHHHHHHhhCHHHHHHHHHhhcccc
Q 005297 204 AFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 283 (703)
Q Consensus 204 A~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D~~tIaAALLHDvVEDT~vT~eeI~~~FG~eVA~LV~gVTKl~~ 283 (703)
|+.||.++|.||++++|+||+.||++||.+|+++|+|+++++||||||++||+..+ ++|++.||++|+++|.++|+++.
T Consensus 1 A~~~A~~~h~~~~~~~g~py~~H~~~va~~l~~~~~d~~~i~aalLHD~ied~~~~-~~i~~~fg~~V~~lV~~lt~~~~ 79 (153)
T PF13328_consen 1 ALAFAAEAHAGQRRKSGEPYISHPLEVAEILAELGLDEETIAAALLHDVIEDTETT-EDIEERFGEDVADLVDALTKIKK 79 (153)
T ss_dssp HHHHHHHHTTT-B-ST--BTTHHHHHHHHHHHTS---HHHHHHHHHTTHHHHSS---HHHHHHHHHHHHHHHHHT---TT
T ss_pred CHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHcCCCHHHHhhheeecHHHhcCCH-HHHHHccChHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999999999999999999999666 99999999999999999999998
Q ss_pred cchhHhhccccchHHHHHHHHHHHhhcC-CceeehhhhhhhHhhcccccCCCHHHHHHHHHHHHHHHHHhhhhcCch
Q 005297 284 LSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGIS 359 (703)
Q Consensus 284 l~~~~r~~~~~~~~~qaE~lRkmLLAma-D~RVvLIKLADRLhNMRtL~~~~~ekq~riA~ETl~IYaPLA~RLGi~ 359 (703)
+..... ......+.+++|+||++++ |+||++||||||+||||++...++++++++|+||++||+|||||||||
T Consensus 80 ~~~~~~---~~~~~~~~~~~r~ml~~~~~d~~~~lIKlaDrl~nl~~~~~~~~~~~~~~a~Et~~i~apLA~rLGiw 153 (153)
T PF13328_consen 80 LSKKPW---EERSEEYAERLRRMLLAMSEDVRAVLIKLADRLHNLRTIKYLPPEKQRRYARETLDIYAPLAHRLGIW 153 (153)
T ss_dssp S-HH------HHHHHHHHHGGG-----S-H-HHHHHHHHHHHHHHHHHHH---TT----------------------
T ss_pred cccccc---hhhHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhccHHHCCHHHhhhhhhccccccccccccccCC
Confidence 865411 1134568999999999996 899999999999999999999999999999999999999999999998
No 7
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases. This family includes the catalytic domains of Escherichia coli ppGpp synthetase (RelA), ppGpp synthetase/hydrolase (SpoT), and related proteins. RelA synthesizes (p)ppGpp in response to amino-acid starvation and in association with ribosomes. (p)ppGpp triggers the bacterial stringent response. SpoT catalyzes (p)ppGpp synthesis under carbon limitation in a ribosome-independent manner. It also catalyzes (p)ppGpp degradation. Gram-negative bacteria have two enzymes involved in (p)ppGpp metabolism while most Gram-positive organisms have a single Rel-Spo enzyme (Rel), which both synthesizes and degrades (p)ppGpp. The Arabidopsis thaliana Rel-Spo proteins, At-RSH1,-2, and-3 appear to regulate a rapid (p)ppGpp-mediated response to pathogens and other stresses. This catalytic domain is found in association with an N-terminal HD domain and a C-terminal metal dependent phosphohydro
Probab=99.96 E-value=2.8e-29 Score=233.94 Aligned_cols=119 Identities=45% Similarity=0.720 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHhcCC---ceecccccccChHHHHHHHhhcCCCC---CcccccEEEEEEECCHHHHHHHHHHHHhhccCC
Q 005297 396 SAIEKLEQALKDKNI---SFLVLCGRHKSLYSIHCKMLKKKLTM---DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEV 469 (703)
Q Consensus 396 ~v~~~L~~~L~~~gI---~~~~V~gR~K~~ySI~~Km~rk~~~~---~~I~Dl~giRIIv~~~~DCy~vlgiIh~~f~p~ 469 (703)
.+...|++.|++.++ .. .|++|+|+++|+++|+.+++.+. ++|+|++|+||||++.+|||.++++|++.|++.
T Consensus 2 ~~~~~l~~~L~~~~~~~~~~-~v~~RvK~~~sl~~Kl~~~~~~~~~~~~i~Dl~g~Rii~~~~~d~~~v~~~l~~~f~~~ 80 (129)
T cd05399 2 AALEEIADLLRDAGIIGRVA-SVSGRVKSPYSIYEKLRRKGKDLPILDEITDLVGVRVVLLFVDDCYRVLDLLHSLFKVI 80 (129)
T ss_pred hHHHHHHHHHHHcCCCCCCc-EEEEecCCHHHHHHHHHhhCCCCCcHHHhhhhheEEEEEeCHHHHHHHHHHHHhCCccc
Confidence 356778888999888 55 59999999999999999998877 999999999999999999999999999999999
Q ss_pred CCcccCccCCCCCCCcceeEEEEecCC---eeeEEEEEeehhhHHHHHh
Q 005297 470 PGKMKDYITRPKFNGYQSLHTVVTGEG---LVPLEVQIRTKEMHLQAEF 515 (703)
Q Consensus 470 p~r~kDyIa~PK~NGYqSLHt~V~~~~---g~~vEIQIRT~~Mh~wAE~ 515 (703)
|++++|||+.||.|||||+|++|..++ |.++||||||.+||+|||.
T Consensus 81 ~~~~~D~~~~p~~~GYrslH~~~~~~~~~~~~~~EIQirT~~~~~wae~ 129 (129)
T cd05399 81 PGRVKDYIAEPKENGYQSLHLVVRGPEDKAGVLIEIQIRTILMHAWAEL 129 (129)
T ss_pred CccccCCcCCCCCCCceEEEEEEEcCCCcCCcEEEEEeCCHHHHHHhcC
Confidence 999999999999999999999999877 8999999999999999984
No 8
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homologue to SpoT and RelA appears reponsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process; PDB: 2BE3_B 1VJ7_B 3L9D_B.
Probab=99.96 E-value=1.2e-29 Score=231.35 Aligned_cols=108 Identities=40% Similarity=0.589 Sum_probs=95.4
Q ss_pred ccccChHHHHHHHhhcCC---CCCcccccEEEEEEECCHHHHHHHHHHHHhhccCCCCcccCccCCCCCCCcceeEEEE-
Q 005297 417 GRHKSLYSIHCKMLKKKL---TMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVV- 492 (703)
Q Consensus 417 gR~K~~ySI~~Km~rk~~---~~~~I~Dl~giRIIv~~~~DCy~vlgiIh~~f~p~p~r~kDyIa~PK~NGYqSLHt~V- 492 (703)
+|+|+++|+++|+.|++. ++++|+|++|+||||.+.+|||.++++|++.|.+.+.+++|||+.||.|||||+|++|
T Consensus 1 ~RvK~~~Sl~~Kl~r~~~~~~~~~~i~Dl~G~RIi~~~~~d~~~v~~~l~~~~~~~~~~~~d~i~~~~~~GYrs~H~~v~ 80 (115)
T PF04607_consen 1 SRVKSPESLIEKLRRKGGPDNPLKDIQDLVGIRIIVYFPDDCYKVLGLLHKLFDVKIDRSKDYIANPKSNGYRSLHYIVP 80 (115)
T ss_dssp EEE--HHHHHHCHHHHTGCCCCCCCTCCSEEEEEEESSCCHHHHHHHHHHTHSSCEEEEEEETTTT--TTS--EEEEEEE
T ss_pred CCCCCHHHHHHHHHhHCCCcccHHHhccccEEEEEEeeHHHHHHHHHHHHHcCCcccccccccccccccCCcEeeEeeee
Confidence 699999999999999875 6899999999999999999999999999999999999999999999999999999999
Q ss_pred --ecCCeeeEEEEEeehhhHHHHHhhhhhhcccccC
Q 005297 493 --TGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 526 (703)
Q Consensus 493 --~~~~g~~vEIQIRT~~Mh~wAE~G~aahw~YK~~ 526 (703)
..+.+.++||||||.+||+|||++ +||.||.+
T Consensus 81 ~~~~~~~~~~EiQIrT~~~~~waei~--h~~~YK~~ 114 (115)
T PF04607_consen 81 ENESFKGYPFEIQIRTLLQHAWAEIE--HDLRYKSS 114 (115)
T ss_dssp ETTECEEEEEEEEEEEHHHHHHHHHH--HHHHHHCT
T ss_pred ecccCCCceeeeeeccHHHHHHHHHH--HHHhCCCC
Confidence 456789999999999999999965 78999964
No 9
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=99.94 E-value=7.6e-27 Score=236.23 Aligned_cols=114 Identities=34% Similarity=0.458 Sum_probs=102.0
Q ss_pred eecccccccChHHHHHHHhhcCCCC------CcccccEEEEEEECCHHHHHHHHHHHHhhccCCCCcccCccCCCCCCCc
Q 005297 412 FLVLCGRHKSLYSIHCKMLKKKLTM------DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 485 (703)
Q Consensus 412 ~~~V~gR~K~~ySI~~Km~rk~~~~------~~I~Dl~giRIIv~~~~DCy~vlgiIh~~f~p~p~r~kDyIa~PK~NGY 485 (703)
+++|++|+|++.||..|++|||+++ ++|+||+||||+|.+.+|.|.+..+|.+.........||||.+||+|||
T Consensus 52 ie~Vt~RvK~~~Si~~Kl~RK~~~i~~~~~~e~i~DIaGIRI~c~F~~DI~~v~~~l~~~~d~~iv~~kDyi~n~k~~GY 131 (231)
T COG2357 52 IEHVTSRVKSPESILEKLRRKGLEITYENLKEDIQDIAGIRIICQFVDDIYRVVDLLKSRKDFTIVEEKDYIRNPKPNGY 131 (231)
T ss_pred hHHHhhccCCHHHHHHHHHhcCCCCChHHHHhHHHhhcceeEeeehHhhHHHHHHHHhcccCccchhHHHHHhCCCCCCC
Confidence 5579999999999999999999543 6899999999999999999999999999877777789999999999999
Q ss_pred ceeEEEEecC-------CeeeEEEEEeehhhHHHHHhhhhhhcccccCC
Q 005297 486 QSLHTVVTGE-------GLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGD 527 (703)
Q Consensus 486 qSLHt~V~~~-------~g~~vEIQIRT~~Mh~wAE~G~aahw~YK~~~ 527 (703)
||+|++|.-| .+..+||||||.+||.||+++|. .+||-++
T Consensus 132 RS~Hlive~pv~~~~~~~~~~vEIQIRTiam~fWAsiEH~--l~YKy~~ 178 (231)
T COG2357 132 RSYHLILEVPVFTINGVKKVRVEIQIRTIAMDFWASIEHK--LRYKYGG 178 (231)
T ss_pred ceEEEEEeccchhhccccceEEEEehhHHHHHHHHHHHHH--hhccccc
Confidence 9999999865 34899999999999999999976 4555543
No 10
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=99.38 E-value=7e-14 Score=115.34 Aligned_cols=52 Identities=33% Similarity=0.467 Sum_probs=47.4
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEee
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
++++||+|+|++|||+.||++++ +++++|+|||+.| +++++|++||+|||+|
T Consensus 9 ~~~~~~~g~T~~d~A~~I~~~l~---------~~~~~A~Vng~~v-dl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 9 SIKELPEGSTVLDVAYSIHSSLA---------KRAVAAKVNGQLV-DLDHPLEDGDVVEIIT 60 (60)
T ss_dssp CEEEEETTBBHHHHHHHHSHHHH---------HCEEEEEETTEEE-ETTSBB-SSEEEEEEE
T ss_pred CeeeCCCCCCHHHHHHHHCHHHH---------hheeEEEEcCEEC-CCCCCcCCCCEEEEEC
Confidence 69999999999999999998875 3789999999999 5999999999999997
No 11
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.92 E-value=5.3e-10 Score=96.80 Aligned_cols=54 Identities=22% Similarity=0.288 Sum_probs=47.7
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEee
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
+.+.||+|+|+.||||+||+++++ .|..|+++| |++.++ ++|+|++||+|||+|
T Consensus 23 d~~~l~~GaTv~D~A~~IHtdi~~------~f~~Ai~~k-~~~~vg-~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 23 DAFLLPKGSTARDLAYAIHTDIGD------GFLHAIDAR-TGRRVG-EDYELKHRDVIKIVS 76 (76)
T ss_pred ceEEECCCCCHHHHHHHHHHHHHh------cceeeEEee-CCEEeC-CCcEecCCCEEEEeC
Confidence 588999999999999999999865 245677888 999995 999999999999986
No 12
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.83 E-value=2e-09 Score=93.07 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=46.1
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCcccc----ccccCCeecCCCCCcCCCCCEEEEee
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL----RPRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~i----gakVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
+.+.||+|||+.|||++||+++++ .|..++ .++.||+.|+ ++++|++||+|||++
T Consensus 17 ~~liL~~GaTV~D~a~~iH~di~~------~f~~A~v~g~s~~~~gq~Vg-l~~~L~d~DvVeI~~ 75 (75)
T cd01666 17 EPVILRRGSTVEDVCNKIHKDLVK------QFKYALVWGSSVKHSPQRVG-LDHVLEDEDVVQIVK 75 (75)
T ss_pred CCEEECCCCCHHHHHHHHHHHHHH------hCCeeEEeccCCcCCCeECC-CCCEecCCCEEEEeC
Confidence 689999999999999999987644 133344 6778999995 999999999999985
No 13
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=98.32 E-value=6.6e-07 Score=72.09 Aligned_cols=52 Identities=27% Similarity=0.367 Sum_probs=43.6
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEee
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
..+++|.|.|+.|++..++.+.. +..+.+++||+++ ++++.|+.||.||+++
T Consensus 9 ~~~~~~~~~t~~~~~~~~~~~~~---------~~~va~~vng~~v-dl~~~l~~~~~ve~v~ 60 (60)
T cd01668 9 EIIELPAGATVLDFAYAIHTEIG---------NRCVGAKVNGKLV-PLSTVLKDGDIVEIIT 60 (60)
T ss_pred CEEEcCCCCCHHHHHHHHChHhh---------hheEEEEECCEEC-CCCCCCCCCCEEEEEC
Confidence 58899999999999987754432 2467889999999 5999999999999985
No 14
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=98.18 E-value=4.7e-06 Score=83.20 Aligned_cols=71 Identities=28% Similarity=0.432 Sum_probs=57.8
Q ss_pred hcCCccccCc--chhHHHHHHHHHHHHhCCCHHHHHHHHhhcc---ccccC--------------CCHHHHHHhhCHHHH
Q 005297 212 HRGQMRASGD--PYLLHCVETAMLLAAIGANSTVVAAGLLHDT---LDDAF--------------LSYDYIFRTFGAGVA 272 (703)
Q Consensus 212 H~GQ~RksGe--PYI~Hpl~VA~ILa~lg~D~~tIaAALLHDv---VEDT~--------------vT~eeI~~~FG~eVA 272 (703)
+.|+...+|+ |++.|++++|.+....|.|++.|+||||||+ ++|.. +..+.|+..||++|+
T Consensus 13 ~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~Gad~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~~F~~~V~ 92 (179)
T TIGR03276 13 EHGARQYGGEAVSQLEHALQCAQLAEAAGADDELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLRELFSPSVT 92 (179)
T ss_pred hcCccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHHHcCHHHH
Confidence 4455556676 6999999999988899999999999999998 77643 225778889999999
Q ss_pred HHHHHhhccc
Q 005297 273 DLVEGVSKLS 282 (703)
Q Consensus 273 ~LV~gVTKl~ 282 (703)
.+|..-..-+
T Consensus 93 ~lV~~Hv~aK 102 (179)
T TIGR03276 93 EPIRLHVQAK 102 (179)
T ss_pred HHHHHHHHHH
Confidence 9999776543
No 15
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.02 E-value=4.6e-06 Score=92.65 Aligned_cols=55 Identities=22% Similarity=0.348 Sum_probs=48.5
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeC
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPA 665 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~ 665 (703)
+...||+|||+.||||.||+++++ + |..|.++| +++.+ +++|+|++||+|+|+++
T Consensus 341 ~~~~l~~g~t~~d~A~~IH~d~~~----~--fi~A~~~~-~~~~~-g~~~~l~dgDiv~i~~~ 395 (396)
T PRK09602 341 DAFLLPKGSTARDLAYKIHTDIGE----G--FLYAIDAR-TKRRI-GEDYELKDGDVIKIVST 395 (396)
T ss_pred eeEEECCCCCHHHHHHHHHHHHHh----h--ceehhccc-CCccc-CCCcEecCCCEEEEEeC
Confidence 588999999999999999999876 2 56777888 78888 49999999999999984
No 16
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.02 E-value=4.1e-06 Score=72.68 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=42.9
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEee
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
+.+.||+|+|+.|||+.||+++.+ + |.+++..+ ++.+ ..+|.|++||+|+|++
T Consensus 24 ~~~~l~~g~tv~d~a~~IH~d~~~----~--F~~A~v~~--~~~v-g~d~~l~d~DVv~i~~ 76 (76)
T cd04938 24 DCVLVKKGTTVGDVARKIHGDLEK----G--FIEAVGGR--RRLE-GKDVILGKNDILKFKT 76 (76)
T ss_pred eeEEEcCCCCHHHHHHHHhHHHHh----c--cEEEEEcc--CEEE-CCCEEecCCCEEEEEC
Confidence 688999999999999999998754 2 44444443 4677 5999999999999975
No 17
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=97.62 E-value=4.9e-05 Score=59.54 Aligned_cols=52 Identities=27% Similarity=0.337 Sum_probs=43.3
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEee
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
..+++|+|+|+.|++..++.... ...+.+++||+++ +++++|..||.||+++
T Consensus 9 ~~~~~~~g~t~~~~~~~~~~~~~---------~~~~~~~vn~~~~-~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 9 SAVELPKGATAMDFALKIHTDLG---------KGFIGALVNGQLV-DLSYTLQDGDTVSIVT 60 (60)
T ss_pred CEEEcCCCCCHHHHHHHHHHHHH---------hheEEEEECCEEC-CCCcCcCCCCEEEEeC
Confidence 58899999999999988765322 2356789999999 5999999999999985
No 18
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.22 E-value=0.00043 Score=81.09 Aligned_cols=79 Identities=23% Similarity=0.376 Sum_probs=64.0
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCCCccHH--------HH
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLT--------EY 674 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~p~~~l~--------~~ 674 (703)
.++++|.|+|+.|+|+.++.+.+ +.+++|+|||+++ +|++++..++.||+++.....++. -+
T Consensus 10 ~~~~~~~gtt~~dia~~~~~~~~---------~~~v~a~vng~l~-dL~~~l~~d~~Vefi~~~~~~g~~~y~hS~~hll 79 (638)
T PRK00413 10 SVREFEAGVTVADVAASISPGLA---------KAAVAGKVNGELV-DLSTPIEEDASLEIITAKDEEGLEIIRHSAAHLL 79 (638)
T ss_pred CEEEeCCCCCHHHHHHHhhhhch---------hheEEEEECCEEe-eCCccccCCCceeeeeccchhhHHHHhhhHHHHH
Confidence 58899999999999999977543 3688999999999 599999999999999966654542 46
Q ss_pred HHHHHHHH-HcccCcCCC
Q 005297 675 REEIQRMY-ERGLAVSNT 691 (703)
Q Consensus 675 r~~i~rm~-~~~~~~~~~ 691 (703)
..+++++| ...+.++++
T Consensus 80 ~~A~~~~~~~~~~~~~~~ 97 (638)
T PRK00413 80 AQAVKRLYPDAKLTIGPV 97 (638)
T ss_pred HHHHHHHcCCceEEECCc
Confidence 78889999 555666654
No 19
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=97.20 E-value=0.00039 Score=54.82 Aligned_cols=52 Identities=27% Similarity=0.411 Sum_probs=43.4
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEee
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
..+++|.|+|+.|++..+..... ...+.+++||+++ ++++++..|+.||+++
T Consensus 9 ~~~~~~~~~t~~~~~~~~~~~~~---------~~~v~~~vng~~~-dL~~~l~~~~~ie~i~ 60 (61)
T cd01667 9 SVKEFPKGTTPLDIAKSISPGLA---------KKAVAAKVNGELV-DLSRPLEEDCELEIIT 60 (61)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHH---------hheEEEEECCEEe-cCCcCcCCCCEEEEEe
Confidence 46789999999999998754322 2457899999999 5999999999999986
No 20
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=96.93 E-value=0.0018 Score=53.91 Aligned_cols=58 Identities=29% Similarity=0.476 Sum_probs=44.2
Q ss_pred EEEeCCccceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecC---CCCCcCCCCCEEEEeeCC
Q 005297 595 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVG---DPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 595 ~~~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~---~l~~~Lk~GDvVEIit~~ 666 (703)
|..+| ..+++|+|.|+.|+.-..+-.. ..+.+.+||++|| -.++.|++||.|||++..
T Consensus 3 i~vNG---~~~~~~~~~tl~~lL~~l~~~~-----------~~vav~vNg~iv~r~~~~~~~l~~gD~vei~~~v 63 (66)
T PRK05659 3 IQLNG---EPRELPDGESVAALLAREGLAG-----------RRVAVEVNGEIVPRSQHASTALREGDVVEIVHAL 63 (66)
T ss_pred EEECC---eEEEcCCCCCHHHHHHhcCCCC-----------CeEEEEECCeEeCHHHcCcccCCCCCEEEEEEEe
Confidence 34555 5889999999999998765331 3455679998883 168999999999999853
No 21
>PRK06437 hypothetical protein; Provisional
Probab=96.91 E-value=0.0019 Score=54.68 Aligned_cols=58 Identities=21% Similarity=0.173 Sum_probs=45.9
Q ss_pred EeCCccceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 005297 597 IENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 597 ~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~ 666 (703)
.+|++=..+++|+|.|+.|+.-.++-.. ..+.+-+||++|| .++.|+.||.|||++..
T Consensus 7 v~g~~~~~~~i~~~~tv~dLL~~Lgi~~-----------~~vaV~vNg~iv~-~~~~L~dgD~Veiv~~V 64 (67)
T PRK06437 7 VKGHINKTIEIDHELTVNDIIKDLGLDE-----------EEYVVIVNGSPVL-EDHNVKKEDDVLILEVF 64 (67)
T ss_pred ecCCcceEEEcCCCCcHHHHHHHcCCCC-----------ccEEEEECCEECC-CceEcCCCCEEEEEecc
Confidence 3453335789999999999998875431 2456679999996 99999999999999864
No 22
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=96.89 E-value=0.0017 Score=54.25 Aligned_cols=52 Identities=27% Similarity=0.374 Sum_probs=42.8
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCC----CcCCCCCEEEEeeCC
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPR----CKLKMGDVVELTPAI 666 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~----~~Lk~GDvVEIit~~ 666 (703)
..+++|.+.|+.|+.-.++... ..+.+.+||++|+ .+ +.|++||.|+|++..
T Consensus 7 ~~~~~~~~~tv~~ll~~l~~~~-----------~~i~V~vNg~~v~-~~~~~~~~L~~gD~V~ii~~v 62 (65)
T cd00565 7 EPREVEEGATLAELLEELGLDP-----------RGVAVALNGEIVP-RSEWASTPLQDGDRIEIVTAV 62 (65)
T ss_pred eEEEcCCCCCHHHHHHHcCCCC-----------CcEEEEECCEEcC-HHHcCceecCCCCEEEEEEec
Confidence 5889999999999998775331 3456789999996 77 899999999999854
No 23
>PRK01777 hypothetical protein; Validated
Probab=96.76 E-value=0.0036 Score=56.79 Aligned_cols=57 Identities=16% Similarity=0.068 Sum_probs=39.8
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEee
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
..+++|.|+|+.|..-+.|-.... -+.-....-.-|||+.+. +++.|++||.|||.+
T Consensus 19 ~~l~vp~GtTv~dal~~sgi~~~~----pei~~~~~~vgI~Gk~v~-~d~~L~dGDRVeIyr 75 (95)
T PRK01777 19 QRLTLQEGATVEEAIRASGLLELR----TDIDLAKNKVGIYSRPAK-LTDVLRDGDRVEIYR 75 (95)
T ss_pred EEEEcCCCCcHHHHHHHcCCCccC----cccccccceEEEeCeECC-CCCcCCCCCEEEEec
Confidence 367899999999999886532110 000000112448999994 999999999999996
No 24
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=96.54 E-value=0.005 Score=51.06 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=40.6
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCC---CCcCCCCCEEEEeeCC
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDP---RCKLKMGDVVELTPAI 666 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l---~~~Lk~GDvVEIit~~ 666 (703)
..+++|.|.|+.|+.-..+.. ..+..-+||++|+.. ++.|+.||.|||++..
T Consensus 8 ~~~~~~~~~tl~~ll~~l~~~------------~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~~v 62 (65)
T PRK06944 8 QTLSLPDGATVADALAAYGAR------------PPFAVAVNGDFVARTQHAARALAAGDRLDLVQPV 62 (65)
T ss_pred EEEECCCCCcHHHHHHhhCCC------------CCeEEEECCEEcCchhcccccCCCCCEEEEEeec
Confidence 588999999999998776432 234567999999522 6899999999999853
No 25
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=96.48 E-value=0.005 Score=51.29 Aligned_cols=53 Identities=25% Similarity=0.277 Sum_probs=41.8
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCC---CCCcCCCCCEEEEeeCC
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD---PRCKLKMGDVVELTPAI 666 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~---l~~~Lk~GDvVEIit~~ 666 (703)
..+++|.|.|+.|+.-..+... ..+...+||++|+. .++.|++||.|||++..
T Consensus 6 ~~~~~~~~~tv~~ll~~l~~~~-----------~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~~V 61 (64)
T TIGR01683 6 EPVEVEDGLTLAALLESLGLDP-----------RRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTFV 61 (64)
T ss_pred eEEEcCCCCcHHHHHHHcCCCC-----------CeEEEEECCEEcCHHHcCceecCCCCEEEEEEec
Confidence 5789999999999998775431 34567899999952 34789999999999854
No 26
>PRK07440 hypothetical protein; Provisional
Probab=96.38 E-value=0.0071 Score=51.72 Aligned_cols=59 Identities=14% Similarity=0.299 Sum_probs=45.5
Q ss_pred EEEEeCCccceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCC---CCCcCCCCCEEEEeeCC
Q 005297 594 VIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD---PRCKLKMGDVVELTPAI 666 (703)
Q Consensus 594 V~~~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~---l~~~Lk~GDvVEIit~~ 666 (703)
.+..+| ..+++|.|.|+.|+.-..+.. .+.+.+.+|+++||. .++.|+.||.|||++..
T Consensus 6 ~i~vNG---~~~~~~~~~tl~~lL~~l~~~-----------~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~~v 67 (70)
T PRK07440 6 TLQVNG---ETRTCSSGTSLPDLLQQLGFN-----------PRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVTIV 67 (70)
T ss_pred EEEECC---EEEEcCCCCCHHHHHHHcCCC-----------CCeEEEEECCEEeCHHHcCceecCCCCEEEEEEEe
Confidence 344555 578999999999998766433 135678899999931 57999999999999854
No 27
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=96.16 E-value=0.012 Score=50.19 Aligned_cols=52 Identities=27% Similarity=0.351 Sum_probs=42.5
Q ss_pred eEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCC
Q 005297 604 VQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIP 667 (703)
Q Consensus 604 v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~p 667 (703)
.+++|.|.|+.|+.-.++-.. +.+...+||++|+ .++.|+.||.|||++...
T Consensus 17 ~~~~~~~~tv~~ll~~l~~~~-----------~~v~v~vNg~iv~-~~~~l~~gD~Veii~~V~ 68 (70)
T PRK08364 17 EIEWRKGMKVADILRAVGFNT-----------ESAIAKVNGKVAL-EDDPVKDGDYVEVIPVVS 68 (70)
T ss_pred EEEcCCCCcHHHHHHHcCCCC-----------ccEEEEECCEECC-CCcCcCCCCEEEEEcccc
Confidence 678899999999998874331 3456789999996 899999999999998643
No 28
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=96.15 E-value=0.0088 Score=50.64 Aligned_cols=56 Identities=21% Similarity=0.252 Sum_probs=43.8
Q ss_pred EEeCCccceEecCCC-CCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCC----CcCCCCCEEEEeeCC
Q 005297 596 MIENDKMSVQEFPTS-STVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPR----CKLKMGDVVELTPAI 666 (703)
Q Consensus 596 ~~~g~~~~v~~LP~G-sTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~----~~Lk~GDvVEIit~~ 666 (703)
..+| ..+++|++ +|+.|+.-..+... ..+.+-+|+++|| -+ +.|+.||.|||++..
T Consensus 4 ~vNG---~~~~~~~~~~tv~~lL~~l~~~~-----------~~vav~vN~~iv~-r~~w~~~~L~~gD~iEIv~~V 64 (67)
T PRK07696 4 KING---NQIEVPESVKTVAELLTHLELDN-----------KIVVVERNKDILQ-KDDHTDTSVFDGDQIEIVTFV 64 (67)
T ss_pred EECC---EEEEcCCCcccHHHHHHHcCCCC-----------CeEEEEECCEEeC-HHHcCceecCCCCEEEEEEEe
Confidence 4455 47899999 79999988765431 3456789999996 55 889999999999854
No 29
>PTZ00258 GTP-binding protein; Provisional
Probab=96.11 E-value=0.005 Score=68.69 Aligned_cols=57 Identities=5% Similarity=0.012 Sum_probs=44.5
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccc--------------cccCC--eecCCCCCcCCCCCEEEEeeCC
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELR--------------PRLNH--KAVGDPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~ig--------------akVNg--~~v~~l~~~Lk~GDvVEIit~~ 666 (703)
+...+|+|+|+.|+|..||+|+.+ | |.++.- ||--| |.+ ..+|.|++||+|++.-..
T Consensus 316 raw~i~~Gsta~~aAg~IHsD~~k----g--Fi~Aev~~~~d~~~~g~~~~ak~~g~~r~e-GkdYiv~DGDIi~f~fnv 388 (390)
T PTZ00258 316 RCWTIQKGTKAPQAAGVIHSDFEK----G--FICAEVMKYEDFLELGSEAAVKAEGKYRQE-GKDYVVQDGDIIFFKFNV 388 (390)
T ss_pred eEEEeCCCCcHHHHHhhhhhHHhh----C--cEEEEECcHHHHHHcCCHHHHHhcCceeee-CCceEecCCCEEEEEecC
Confidence 688999999999999999999877 4 333322 44445 566 589999999999997543
No 30
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=96.10 E-value=0.014 Score=49.07 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=44.5
Q ss_pred EEEeCCccceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecC---CCCCcCCCCCEEEEeeCC
Q 005297 595 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVG---DPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 595 ~~~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~---~l~~~Lk~GDvVEIit~~ 666 (703)
+..+| ..+++|.+.|+.|+.-..+.. ...+.+-+|+++|| --++.|+.||.|||++..
T Consensus 3 i~vNg---~~~~~~~~~tl~~ll~~l~~~-----------~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~v 63 (66)
T PRK08053 3 ILFND---QPMQCAAGQTVHELLEQLNQL-----------QPGAALAINQQIIPREQWAQHIVQDGDQILLFQVI 63 (66)
T ss_pred EEECC---eEEEcCCCCCHHHHHHHcCCC-----------CCcEEEEECCEEeChHHcCccccCCCCEEEEEEEc
Confidence 34455 588999999999998776433 13567789999995 245689999999999864
No 31
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=96.00 E-value=0.016 Score=49.60 Aligned_cols=53 Identities=28% Similarity=0.361 Sum_probs=44.0
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCC---CCCcCCCCCEEEEeeCC
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD---PRCKLKMGDVVELTPAI 666 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~---l~~~Lk~GDvVEIit~~ 666 (703)
...+++.+.|+.|+--.++... +.+.+.+||.+||. .++.|++||.|||++..
T Consensus 10 ~~~e~~~~~tv~dLL~~l~~~~-----------~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~~v 65 (68)
T COG2104 10 KEVEIAEGTTVADLLAQLGLNP-----------EGVAVAVNGEIVPRSQWADTILKEGDRIEVVRVV 65 (68)
T ss_pred EEEEcCCCCcHHHHHHHhCCCC-----------ceEEEEECCEEccchhhhhccccCCCEEEEEEee
Confidence 5889999999999988775442 35678899999943 78999999999999854
No 32
>PRK14707 hypothetical protein; Provisional
Probab=95.99 E-value=0.029 Score=71.97 Aligned_cols=107 Identities=20% Similarity=0.199 Sum_probs=82.1
Q ss_pred cccccccChHHHHHHHhh----cCCCC----CcccccEEEEEEECC---HHHHHHHHHHHHhh-ccCCCCcccCccCCCC
Q 005297 414 VLCGRHKSLYSIHCKMLK----KKLTM----DEIHDIYGLRLIVEN---EEDCYQALRVVHQL-WAEVPGKMKDYITRPK 481 (703)
Q Consensus 414 ~V~gR~K~~ySI~~Km~r----k~~~~----~~I~Dl~giRIIv~~---~~DCy~vlgiIh~~-f~p~p~r~kDyIa~PK 481 (703)
....|+|+..||.+|+.. ++.++ ..|.|.+-.=||.+. ...+..+++.+.+. |+.+ +++++-. .+
T Consensus 2306 GLe~RLKS~~SLkrKL~~~~~~~~~sleeAaa~VnDALRYTVVLpp~~Fva~~r~Il~aL~~qGy~~v--kvkN~F~-~~ 2382 (2710)
T PRK14707 2306 GTQHQLKSYSSLQEKLKQRVALKKQSLEEAAASVNDALRYSVVLEPQGFTAGLRAVLAALDDQGHARV--KLTNQFT-EY 2382 (2710)
T ss_pred chHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHhhhheeEEEEcCchhHHHHHHHHHHHHHHcCCeEE--EEeeccc-CC
Confidence 378899999999999973 45554 679998888888874 66788887777654 4433 4555553 34
Q ss_pred CCCcceeEEEEecCCeeeEEEEEeehhhHHHHHhhhhhhcccccC
Q 005297 482 FNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 526 (703)
Q Consensus 482 ~NGYqSLHt~V~~~~g~~vEIQIRT~~Mh~wAE~G~aahw~YK~~ 526 (703)
.+.|..+++++..++|..+|||.-|..--..-+. .|=.||+.
T Consensus 2383 ~~~YkGINvtL~~pdG~~FEIQFHT~qSF~LK~r---~HdLYKQ~ 2424 (2710)
T PRK14707 2383 SPSFKAINLTLRSPEGALWEIQFHTPETFALKER---FHDLYKRT 2424 (2710)
T ss_pred CCCccceEEEEEcCCCcEEEEEeccHHHHHHHHH---HHHHHHHH
Confidence 4789999999999999999999999887766653 56678864
No 33
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=95.90 E-value=0.005 Score=68.09 Aligned_cols=57 Identities=11% Similarity=0.031 Sum_probs=44.9
Q ss_pred cceEecCCCCCHhhhhHhhccCCCCCCCCCCCCcccc--------------ccccCCeecC-CCCCcCCCCCEEEEee
Q 005297 602 MSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL--------------RPRLNHKAVG-DPRCKLKMGDVVELTP 664 (703)
Q Consensus 602 ~~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~i--------------gakVNg~~v~-~l~~~Lk~GDvVEIit 664 (703)
.+...+|+|+|+.|+|..||+|+.+ | |.++. .||=.|++-- .-+|.+++||+|.|..
T Consensus 291 vrawti~~GstA~~aAg~IHsD~~k----g--FI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~f~f 362 (364)
T PRK09601 291 VRAWTIKKGTTAPQAAGVIHTDFEK----G--FIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMHFRF 362 (364)
T ss_pred EEEEEeCCCCchHHHhhcchhhHhh----c--cEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEEEEc
Confidence 4789999999999999999999876 4 55565 6774455321 4689999999999853
No 34
>PLN02908 threonyl-tRNA synthetase
Probab=95.55 E-value=0.022 Score=67.90 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=67.7
Q ss_pred eEEEEEeCCccceEecCC-CCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCCCcc
Q 005297 592 VFVIMIENDKMSVQEFPT-SSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKS 670 (703)
Q Consensus 592 vfV~~~~g~~~~v~~LP~-GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~p~~~ 670 (703)
|-|.+|+| .+++.|+ |+||.|+|-.+..... ...+.|+|||+++ +++++|..+..||+++.....+
T Consensus 52 i~i~~~dg---~~~~~~~~~tt~~~ia~~i~~~~~---------~~~v~a~Vng~l~-dL~~~l~~d~~le~l~~~~~eg 118 (686)
T PLN02908 52 IKVTLPDG---AVKDGKKWVTTPMDIAKEISKGLA---------NSALIAQVDGVLW-DMTRPLEGDCKLKLFKFDDDEG 118 (686)
T ss_pred eEEEeCCC---ceEeecCCCCCHHHHHHHhCccch---------hhcEEEEECCEEe-ecCccccCCCeeEEeccccHHH
Confidence 33444444 4788885 5999999999865432 3578999999998 6999999988999999666544
Q ss_pred H--------HHHHHHHHHHHHcccCcCCCC
Q 005297 671 L--------TEYREEIQRMYERGLAVSNTG 692 (703)
Q Consensus 671 l--------~~~r~~i~rm~~~~~~~~~~~ 692 (703)
. .-+..++++.|...++++|+.
T Consensus 119 ~~~y~hS~ahlL~~A~~~~~~~~l~ig~~i 148 (686)
T PLN02908 119 RDTFWHSSAHILGEALELEYGCKLCIGPCT 148 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEecCcc
Confidence 3 257889999997778888774
No 35
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=95.40 E-value=0.026 Score=47.37 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=43.8
Q ss_pred EEEeCCccceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCC--CCCcCCCCCEEEEeeCC
Q 005297 595 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD--PRCKLKMGDVVELTPAI 666 (703)
Q Consensus 595 ~~~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~--l~~~Lk~GDvVEIit~~ 666 (703)
++.+| ..+++|++.|+.|+.-..+-.. ..+..-+|+.+||. .++.|++||.|||++..
T Consensus 3 i~vNG---~~~~~~~~~tl~~ll~~l~~~~-----------~~vav~~N~~iv~r~~~~~~L~~gD~ieIv~~V 62 (65)
T PRK05863 3 VVVNE---EQVEVDEQTTVAALLDSLGFPE-----------KGIAVAVDWSVLPRSDWATKLRDGARLEVVTAV 62 (65)
T ss_pred EEECC---EEEEcCCCCcHHHHHHHcCCCC-----------CcEEEEECCcCcChhHhhhhcCCCCEEEEEeec
Confidence 34555 5889999999999998765431 35677889997742 44679999999999854
No 36
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=95.29 E-value=0.028 Score=66.34 Aligned_cols=79 Identities=22% Similarity=0.321 Sum_probs=62.5
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCCCccHH--------HH
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLT--------EY 674 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~p~~~l~--------~~ 674 (703)
..+++|+|.|+.|+|..+..... ...+.|+|||+++ +|++++..+..||+++.....++. .+
T Consensus 14 ~~~~~~~g~t~~~ia~~~~~~~~---------~~iv~a~vn~~l~-dL~~~i~~d~~i~fv~~~~~~g~~iy~hS~~hlL 83 (639)
T PRK12444 14 SVKEFVKGITLEEIAGSISSSLK---------KKAVAGKVNDKLY-DLRRNLEEDAEVEIITIDSNEGVEIARHSAAHIL 83 (639)
T ss_pred CEEEecCCCCHHHHHHHhhhhcc---------hheEEEEECCEEE-EcCcccCCCCeEEEecCCChHHHHHHHHHHHHHH
Confidence 57899999999999988754422 3578999999999 699999999999999977666652 46
Q ss_pred HHHHHHHH-HcccCcCCC
Q 005297 675 REEIQRMY-ERGLAVSNT 691 (703)
Q Consensus 675 r~~i~rm~-~~~~~~~~~ 691 (703)
..+++++| +..+.++++
T Consensus 84 ~~A~~~~~~~~~~~i~~~ 101 (639)
T PRK12444 84 AQAVKRLYGDVNLGVGPV 101 (639)
T ss_pred HHHHHHHcCCcEEEeCCc
Confidence 78888988 445665655
No 37
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=95.17 E-value=0.038 Score=46.09 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=40.8
Q ss_pred EEeCCccceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCC----CCcCCCCCEEEEeeCC
Q 005297 596 MIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDP----RCKLKMGDVVELTPAI 666 (703)
Q Consensus 596 ~~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l----~~~Lk~GDvVEIit~~ 666 (703)
..+| ..+++ .+.|+.|+--..+-.. +.+.+-+|+++|| . ++.|++||.|||++..
T Consensus 4 ~~Ng---~~~~~-~~~tl~~Ll~~l~~~~-----------~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V 62 (65)
T PRK06488 4 FVNG---ETLQT-EATTLALLLAELDYEG-----------NWLATAVNGELVH-KEARAQFVLHEGDRIEILSPM 62 (65)
T ss_pred EECC---eEEEc-CcCcHHHHHHHcCCCC-----------CeEEEEECCEEcC-HHHcCccccCCCCEEEEEEec
Confidence 4455 46777 4679999987654321 3456789999996 5 7899999999999854
No 38
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=95.17 E-value=0.013 Score=63.70 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=45.8
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCcccc----ccccCCeecCCCCCcCCCCCEEEEee
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL----RPRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~i----gakVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
+.+-|.+||||.|++-+||.+.-+ .|.++. .+|-.|+.| .++|.|.++|+|+|+-
T Consensus 306 ~PlIlr~GsTV~Dvc~~IH~~l~~------~FryA~VWGkSvk~~~QrV-G~dHvLeD~DIV~I~~ 364 (365)
T COG1163 306 EPLILRRGSTVGDVCRKIHRDLVE------NFRYARVWGKSVKHPGQRV-GLDHVLEDEDIVEIHA 364 (365)
T ss_pred CCeEEeCCCcHHHHHHHHHHHHHH------hcceEEEeccCCCCCcccc-CcCcCccCCCeEEEee
Confidence 467899999999999999987644 244554 588899999 6999999999999973
No 39
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=94.60 E-value=0.029 Score=47.91 Aligned_cols=60 Identities=27% Similarity=0.272 Sum_probs=43.8
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~ 666 (703)
..+++|.|+|+.|+.-.+....+.. .......+.+-|||+.|+ .+++|+.||.|+|+|..
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~---~~~~~~~~~v~vNg~~v~-~~~~l~~gD~v~i~ppv 77 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGL---LEELLARVRIAVNGEYVR-LDTPLKDGDEVAIIPPV 77 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchH---HHhhhhcEEEEECCeEcC-CCcccCCCCEEEEeCCC
Confidence 3568899999999997764432110 001234566789999996 99999999999999854
No 40
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=94.48 E-value=0.045 Score=48.35 Aligned_cols=50 Identities=32% Similarity=0.425 Sum_probs=41.1
Q ss_pred eEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccc-cccCCeecCCCCCcCCCCCEEEEeeC
Q 005297 604 VQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELR-PRLNHKAVGDPRCKLKMGDVVELTPA 665 (703)
Q Consensus 604 v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~ig-akVNg~~v~~l~~~Lk~GDvVEIit~ 665 (703)
...++.++|+.|+..++|-=+ .+++ ..|||+.| ++++.++.||.|.|.+.
T Consensus 26 ~~~~~~~~tvkd~IEsLGVP~-----------tEV~~i~vNG~~v-~~~~~~~~Gd~v~V~P~ 76 (81)
T PF14451_consen 26 THPFDGGATVKDVIESLGVPH-----------TEVGLILVNGRPV-DFDYRLKDGDRVAVYPV 76 (81)
T ss_pred EEecCCCCcHHHHHHHcCCCh-----------HHeEEEEECCEEC-CCcccCCCCCEEEEEec
Confidence 568999999999999985433 2333 57999999 59999999999999974
No 41
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=94.18 E-value=0.058 Score=47.12 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=28.9
Q ss_pred CcchhHHHHHHHHHHHHhC------CCHHHHHHHHhhcccccc
Q 005297 220 GDPYLLHCVETAMLLAAIG------ANSTVVAAGLLHDTLDDA 256 (703)
Q Consensus 220 GePYI~Hpl~VA~ILa~lg------~D~~tIaAALLHDvVEDT 256 (703)
+++.+.|.+.|+.+...+. .......||||||+-...
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~ 44 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPG 44 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCcc
Confidence 5678899999998876553 345688999999997754
No 42
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=94.14 E-value=0.096 Score=46.58 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=43.6
Q ss_pred EEEeCCccceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCC---CCCcCCCCCEEEEeeCC
Q 005297 595 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD---PRCKLKMGDVVELTPAI 666 (703)
Q Consensus 595 ~~~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~---l~~~Lk~GDvVEIit~~ 666 (703)
+..+| ..++++.+.|+.||.-..+.. ...+.+-+||++||. -++.|+.||.|||++..
T Consensus 21 I~VNG---~~~~~~~~~tl~~LL~~l~~~-----------~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv~~V 81 (84)
T PRK06083 21 ISIND---QSIQVDISSSLAQIIAQLSLP-----------ELGCVFAINNQVVPRSEWQSTVLSSGDAISLFQAI 81 (84)
T ss_pred EEECC---eEEEcCCCCcHHHHHHHcCCC-----------CceEEEEECCEEeCHHHcCcccCCCCCEEEEEEEe
Confidence 44555 589999999999998765432 134556799999953 24789999999999854
No 43
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=93.98 E-value=0.039 Score=47.89 Aligned_cols=59 Identities=24% Similarity=0.246 Sum_probs=42.5
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~ 666 (703)
..+++|.|+|+.|+.-.+......+.. ....+-.-||++.++ .++.|+.||.|+|+|..
T Consensus 21 ~~~~~~~~~tv~~L~~~l~~~~p~l~~----~~~~~~vavN~~~v~-~~~~l~dgDeVai~Ppv 79 (82)
T PLN02799 21 MTLELPAGSTTADCLAELVAKFPSLEE----VRSCCVLALNEEYTT-ESAALKDGDELAIIPPI 79 (82)
T ss_pred EEEECCCCCcHHHHHHHHHHHChhHHH----HhhCcEEEECCEEcC-CCcCcCCCCEEEEeCCC
Confidence 478899999999998777443211110 112233569999995 99999999999999854
No 44
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=93.65 E-value=0.047 Score=48.62 Aligned_cols=52 Identities=25% Similarity=0.196 Sum_probs=27.5
Q ss_pred ceEecCCCCCHhhhhHhh-----ccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEee
Q 005297 603 SVQEFPTSSTVMDLLERA-----GRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i-----~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
-.++||+|+|+.|..-+- .+++.- .....=|=||.++ +++.|+.||.|||.-
T Consensus 16 ~~l~vp~GtTv~~Ai~~Sgi~~~~p~idl---------~~~~vGIfGk~~~-~d~~L~~GDRVEIYR 72 (84)
T PF03658_consen 16 LTLEVPEGTTVAQAIEASGILEQFPEIDL---------EKNKVGIFGKLVK-LDTVLRDGDRVEIYR 72 (84)
T ss_dssp EEEEEETT-BHHHHHHHHTHHHH-TT--T---------TTSEEEEEE-S---TT-B--TT-EEEEE-
T ss_pred EEEECCCcCcHHHHHHHcCchhhCcccCc---------ccceeeeeeeEcC-CCCcCCCCCEEEEec
Confidence 367899999999987542 222210 0111225678885 999999999999983
No 45
>PRK14707 hypothetical protein; Provisional
Probab=92.64 E-value=1.2 Score=58.13 Aligned_cols=194 Identities=20% Similarity=0.231 Sum_probs=118.7
Q ss_pred hHhhc----cc--ccCCCHHHHHHHHHHHHHHHHHhhhhcCchhH-HHHHH--hhhhhccCcchhh----------HHHH
Q 005297 323 RLHNM----MT--LDALPLCKRQRFAKETLEIFVPLANRLGISTW-KVQLE--NLCFKHLNPDQHT----------ELSS 383 (703)
Q Consensus 323 RLhNM----Rt--L~~~~~ekq~riA~ETl~IYaPLA~RLGi~~i-K~ELE--DLafryL~P~~y~----------~i~~ 383 (703)
+.|++ +. +...++++|+.+-.+..+.|....-=-|...| -|+=| ...+. ..|..-. .. +
T Consensus 2416 r~HdLYKQ~q~L~lqGAs~~~~ral~a~a~e~f~aVp~P~Gce~I~dW~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~-~ 2493 (2710)
T PRK14707 2416 RFHDLYKRTHALALGGASRAEQRTLQAPALEAFKRVASPPGCEEIDDWQEETVPALAG-TPPALASEQTPVNAGASPA-H 2493 (2710)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccCCCCCchhhhhhhhccCcccCcC-CCCccccccccccccccHH-H
Confidence 56666 22 55678889998989999999887665565542 22222 22211 1121111 11 2
Q ss_pred HHHhh----hh--hhhHHHHHHHHHHHHHhcCCceecccccc---------cChHHHHHHHhh---cCCC----CCcccc
Q 005297 384 KLVEC----FD--EAMVTSAIEKLEQALKDKNISFLVLCGRH---------KSLYSIHCKMLK---KKLT----MDEIHD 441 (703)
Q Consensus 384 ~l~~~----~~--e~~i~~v~~~L~~~L~~~gI~~~~V~gR~---------K~~ySI~~Km~r---k~~~----~~~I~D 441 (703)
+|... ++ ...++.+.+.+...|...+. +..-+||. |+..||.+|+.+ .+++ +..|.|
T Consensus 2494 r~~~~a~~~~~~v~p~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Ks~~Si~RKI~~~~~~~ls~eqAaarVrD 2572 (2710)
T PRK14707 2494 RVFNAATGKQASLTPVLNTLADGLGARLWGNVR-YKASQGRIEQVQQAPFQKSLASIKDKIRRHLRAGMTAEQATQSVGD 2572 (2710)
T ss_pred HHHHHhhhcccccChHHHHHHHHhhhhhcccCc-cccccchhhhhhhcccCCCHHHHHHHHHHHHhcCCCHHHHHHHhhh
Confidence 22211 11 12334444444444444332 11234555 999999999986 3444 367999
Q ss_pred cEEEEEEECC---HHHHHHHHHHHHhh-ccCCCCcccCccCCCCCCCcceeEEEEecCCeeeEEEEEeehhhHHHHHhhh
Q 005297 442 IYGLRLIVEN---EEDCYQALRVVHQL-WAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGF 517 (703)
Q Consensus 442 l~giRIIv~~---~~DCy~vlgiIh~~-f~p~p~r~kDyIa~PK~NGYqSLHt~V~~~~g~~vEIQIRT~~Mh~wAE~G~ 517 (703)
.+-.-||.+. ......+.+.+... |+.+ ++|++-..| .+.|..+-+++..++|..||||.-|..--..-+ +
T Consensus 2573 alRYtviLp~e~Fv~~v~~~~~~L~~~G~~~~--rvKNtw~~~-d~tY~GvN~~~r~~~g~~FEIQFHT~~Sf~~K~-~- 2647 (2710)
T PRK14707 2573 ALRYALELPSEGFVAKVQAAQDALRRQGMTCV--NLQNYFTSG-DGTYRGINASFTDAEGYAFEVQFHTAESFNAKA-Q- 2647 (2710)
T ss_pred heeEEEEcCcchHHHHHHHHHHHHHhcCCeEE--EeeccccCC-CCcccceeeeEEcCCCCeEEEEeccHHHHHHHH-H-
Confidence 8888888874 56777777777654 5554 677766543 367999999999999899999999976554444 4
Q ss_pred hhhccccc
Q 005297 518 AAHWRYKE 525 (703)
Q Consensus 518 aahw~YK~ 525 (703)
.|-.|+.
T Consensus 2648 -tH~lYek 2654 (2710)
T PRK14707 2648 -THLSYKR 2654 (2710)
T ss_pred -hHHHHHh
Confidence 5667864
No 46
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=92.53 E-value=0.092 Score=44.36 Aligned_cols=58 Identities=31% Similarity=0.406 Sum_probs=44.1
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCC---CCcCCCCCEEEEeeCC
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDP---RCKLKMGDVVELTPAI 666 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l---~~~Lk~GDvVEIit~~ 666 (703)
..+.+|.++|+.|+.-++........ ....+..-|||++++ . +++|+.||.|.|+|..
T Consensus 14 ~~~~~~~~~tv~~ll~~l~~~~p~~~-----~~~~~~v~vN~~~v~-~~~~~~~l~~gD~V~i~ppv 74 (77)
T PF02597_consen 14 EEIEVPEGSTVRDLLEALAERYPELA-----LRDRVAVAVNGEIVP-DDGLDTPLKDGDEVAILPPV 74 (77)
T ss_dssp EEEEESSTSBHHHHHHHHCHHTGGGH-----TTTTEEEEETTEEEG-GGTTTSBEETTEEEEEEEST
T ss_pred eEEecCCCCcHHHHHHHHHhhccccc-----cCccEEEEECCEEcC-CccCCcCcCCCCEEEEECCC
Confidence 47789999999999988754432110 113456779999996 6 9999999999999854
No 47
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=92.07 E-value=0.18 Score=44.69 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHhCC------CH-HHHHHHHhhcccccc
Q 005297 224 LLHCVETAMLLAAIGA------NS-TVVAAGLLHDTLDDA 256 (703)
Q Consensus 224 I~Hpl~VA~ILa~lg~------D~-~tIaAALLHDvVEDT 256 (703)
+.|.+.|+.+...+.. +. ...+||||||+=.-.
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~ 41 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIP 41 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHS
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCC
Confidence 6799999988765532 22 367999999997654
No 48
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=92.05 E-value=0.24 Score=54.09 Aligned_cols=57 Identities=21% Similarity=0.308 Sum_probs=43.8
Q ss_pred EEEeCCccceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCC---CCCcCCCCCEEEEeeC
Q 005297 595 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGD---PRCKLKMGDVVELTPA 665 (703)
Q Consensus 595 ~~~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~---l~~~Lk~GDvVEIit~ 665 (703)
|..+| +.++++.|.|+.|+.-..+... +.+...|||++||. .++.|++||.|||++.
T Consensus 3 I~VNG---k~~el~e~~TL~dLL~~L~i~~-----------~~VAVeVNgeIVpr~~w~~t~LkeGD~IEII~~ 62 (326)
T PRK11840 3 IRLNG---EPRQVPAGLTIAALLAELGLAP-----------KKVAVERNLEIVPRSEYGQVALEEGDELEIVHF 62 (326)
T ss_pred EEECC---EEEecCCCCcHHHHHHHcCCCC-----------CeEEEEECCEECCHHHcCccccCCCCEEEEEEE
Confidence 34455 5789999999999997764431 35667799999941 4579999999999983
No 49
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=90.85 E-value=0.33 Score=41.97 Aligned_cols=58 Identities=22% Similarity=0.343 Sum_probs=41.6
Q ss_pred eEecCCC-CCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 005297 604 VQEFPTS-STVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 604 v~~LP~G-sTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~ 666 (703)
.+++|.+ +|+.|+.-.+....+... .....+..-||++.++ .+++|+.||.|.|+|-.
T Consensus 19 ~~~~~~~~~tv~~L~~~L~~~~p~l~----~~~~~~~v~vn~~~v~-~~~~l~dgDevai~Ppv 77 (80)
T TIGR01682 19 TLELPDESTTVGELKEHLAKEGPELA----ASRGQVMVAVNEEYVT-DDALLNEGDEVAFIPPV 77 (80)
T ss_pred EEECCCCCcCHHHHHHHHHHhCchhh----hhccceEEEECCEEcC-CCcCcCCCCEEEEeCCC
Confidence 6788977 999999987744322110 0112345679999995 89999999999999843
No 50
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=90.47 E-value=1.9 Score=44.99 Aligned_cols=124 Identities=15% Similarity=0.081 Sum_probs=67.4
Q ss_pred chHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH--------hCCCHH-HHHHHHhhcccc-ccCCCHHHHH-
Q 005297 196 FREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA--------IGANST-VVAAGLLHDTLD-DAFLSYDYIF- 264 (703)
Q Consensus 196 ~d~~~I~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~--------lg~D~~-tIaAALLHDvVE-DT~vT~eeI~- 264 (703)
-|..++++|.+++.+.+. ..-+.|.++|...... ++.|.+ ..+||||||+.. +.......+.
T Consensus 36 Pdt~l~~~a~~~~~~~l~-------~~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG~~~~~~~~~~~~f 108 (228)
T TIGR03401 36 PDTPLVKFAQEYAKARLP-------PETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIGTTDENMTATKMSF 108 (228)
T ss_pred CChHHHHHHHHHHHhhCC-------HhhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhccccccCCcccCCH
Confidence 366788889998877644 2457899998753332 367765 458899999875 2222111111
Q ss_pred HhhCHHHH-HHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhc------C--CceeehhhhhhhHhhccc-ccCCC
Q 005297 265 RTFGAGVA-DLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAM------A--DARAVLIKLADRLHNMMT-LDALP 334 (703)
Q Consensus 265 ~~FG~eVA-~LV~gVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAm------a--D~RVvLIKLADRLhNMRt-L~~~~ 334 (703)
+..|...+ +++...+ +.+. .+.+.+...+... . ++.+.||..||+++++-. ...++
T Consensus 109 e~~ga~~A~~~L~~~~---G~~~-----------~~~~~V~~aI~~H~~~~~~~~~~~e~~lvq~Ad~lDa~Ga~~~~~~ 174 (228)
T TIGR03401 109 EFYGGILALDVLKEQT---GANQ-----------DQAEAVAEAIIRHQDLGVDGTITTLGQLLQLATIFDNVGANTDLVH 174 (228)
T ss_pred HHHHHHHHHHHHHHCC---CCCH-----------HHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHhHccCChhhCC
Confidence 12333322 3333221 1111 1122222221111 1 446789999999999863 45567
Q ss_pred HHHHHH
Q 005297 335 LCKRQR 340 (703)
Q Consensus 335 ~ekq~r 340 (703)
++.+..
T Consensus 175 ~~~~~~ 180 (228)
T TIGR03401 175 PDTVDA 180 (228)
T ss_pred HHHHHH
Confidence 666544
No 51
>PRK09169 hypothetical protein; Validated
Probab=90.24 E-value=0.95 Score=59.64 Aligned_cols=120 Identities=19% Similarity=0.196 Sum_probs=83.2
Q ss_pred HHHHHHhcCCceecccccccChHHHHHHHh----hcCCCC----CcccccEEEEEEECC---HHHHHHHHHHHHhh-ccC
Q 005297 401 LEQALKDKNISFLVLCGRHKSLYSIHCKML----KKKLTM----DEIHDIYGLRLIVEN---EEDCYQALRVVHQL-WAE 468 (703)
Q Consensus 401 L~~~L~~~gI~~~~V~gR~K~~ySI~~Km~----rk~~~~----~~I~Dl~giRIIv~~---~~DCy~vlgiIh~~-f~p 468 (703)
|+......|........|+|+..|+.+|+. +++.++ ..|.|.+-.=|+.+. ...+..+++.+... |..
T Consensus 1902 L~s~a~~~g~~L~Gle~RlKS~~SL~rKL~~~~~~~~~s~e~Aaa~VnDALRYtvvLp~~~Fva~~r~iv~~L~~~G~~~ 1981 (2316)
T PRK09169 1902 LRAAIEGIGGQLRGLAHRLKSEGSLFEKLRGLMAKKHLTPEEAAALVNDALRYSVVLPPQTFVAGYRRILGALDEQGHTR 1981 (2316)
T ss_pred HHHHHHHhcCCccchHhhhCCHHHHHHHHHHHHhccCCCHHHHHHhccceeeEEEecCCccHHHHHHHHHHHHHhCCCeE
Confidence 333333333322347889999999999998 456654 568998777777764 56777788777654 443
Q ss_pred CCCcccCccCCCCCCCcceeEEEE-ecCCeeeEEEEEeehhhHHHHHhhhhhhcccccC
Q 005297 469 VPGKMKDYITRPKFNGYQSLHTVV-TGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 526 (703)
Q Consensus 469 ~p~r~kDyIa~PK~NGYqSLHt~V-~~~~g~~vEIQIRT~~Mh~wAE~G~aahw~YK~~ 526 (703)
+ +++++-.. ..+.|..+|+++ ..++|..+|||.-|..--..-+. .|=.||+.
T Consensus 1982 V--kv~N~F~~-~~~~YkGVNv~l~~s~~g~~fEIQFHT~qSF~lK~r---~H~lYkq~ 2034 (2316)
T PRK09169 1982 T--RVTNHFKK-RGPAFKGINVTLDATGEGVRLEIQFHTPQTFDLKER---FHDLYKQA 2034 (2316)
T ss_pred E--EEEeeecc-CCCCccceEEeeecCCCCceEEEEecCHHHHHHHHH---hHHHHHHH
Confidence 3 33442222 247999999999 67889999999999877666654 56688863
No 52
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=89.92 E-value=2.3 Score=46.99 Aligned_cols=149 Identities=17% Similarity=0.108 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHH----HhCCCHH-HHHHHHhhccccccCC-------CHHHHHH-h
Q 005297 200 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLDDAFL-------SYDYIFR-T 266 (703)
Q Consensus 200 ~I~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa----~lg~D~~-tIaAALLHDvVEDT~v-------T~eeI~~-~ 266 (703)
..++|+++-.+.+. .+..+.|.++|+.+.. .++.|.+ .++||||||+-..... ..+-|++ .
T Consensus 171 ~~ee~l~Ll~k~~~------~e~l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~~~~~H~~~Ga~iL~e~G 244 (339)
T PRK12703 171 DEDQCLDLLKKYGA------SDLLIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKTNGIDHAVAGAEILRKEN 244 (339)
T ss_pred CHHHHHHHHHHcCC------ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHCC
Confidence 45566666544422 2235789999987643 4567765 4567999999653321 2233333 2
Q ss_pred hCHHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhcCCceeehhhhhhhHhhcccccCCCHHHHHHHHHHHH
Q 005297 267 FGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETL 346 (703)
Q Consensus 267 FG~eVA~LV~gVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAmaD~RVvLIKLADRLhNMRtL~~~~~ekq~riA~ETl 346 (703)
|.++|+++|+.-..- .++... .+...+..-...-......+|-.||+|..... .++.+.+.+-.++.
T Consensus 245 ~~e~i~~iIe~H~g~-G~~~~~---------~~~~gL~~~~~~P~TLEakIV~dADrL~~~~r--~v~~e~~~~k~~~~- 311 (339)
T PRK12703 245 IDDRVVSIVERHIGA-GITSEE---------AQKLGLPVKDYVPETIEEMIVAHADNLFAGDK--RLNLKQVMDKYRKK- 311 (339)
T ss_pred CCHHHHHHHHHHhcc-CCCcch---------hhccCCccccCCCCCHHHHHHHHHHHHhcCCC--cCCHHHHHHHHHhh-
Confidence 556788888654421 111000 00000000000001345679999999977653 24444433322222
Q ss_pred HHHHHhhhhcCchhHHHHHHhhhh
Q 005297 347 EIFVPLANRLGISTWKVQLENLCF 370 (703)
Q Consensus 347 ~IYaPLA~RLGi~~iK~ELEDLaf 370 (703)
-++..++| +..|..|||.++=
T Consensus 312 -~~~~~~~R--~~~l~~~~~~~~g 332 (339)
T PRK12703 312 -GLHDAAER--IKKLHEELSSICG 332 (339)
T ss_pred -hhhHHHHH--HHHHHHHHHHHhC
Confidence 12334455 4556666666553
No 53
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.19 E-value=3 Score=38.21 Aligned_cols=56 Identities=23% Similarity=0.157 Sum_probs=34.6
Q ss_pred eEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEee
Q 005297 604 VQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 604 v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
-+.|+.|+||.|..-+-|----+ -+..++++. .=|=+|+|. ++.+|+.||.|||.-
T Consensus 20 ~v~v~egatV~dAi~~Sgll~~~---~~idl~~n~-~GI~~k~~k-l~~~l~dgDRVEIyR 75 (99)
T COG2914 20 RVQLQEGATVEDAILASGLLELF---PDIDLHENK-VGIYSKPVK-LDDELHDGDRVEIYR 75 (99)
T ss_pred EEEeccCcCHHHHHHhcchhhcc---ccCCccccc-eeEEccccC-ccccccCCCEEEEec
Confidence 46799999999988653211000 001111111 114467785 899999999999994
No 54
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=82.69 E-value=2.3 Score=37.24 Aligned_cols=62 Identities=27% Similarity=0.286 Sum_probs=40.2
Q ss_pred eEecCCCCCHhhhhHhhccCCCCCCC--C--CCCCccccccccCCeecCCCCC--cCCCCCEEEEeeCCC
Q 005297 604 VQEFPTSSTVMDLLERAGRGSSRWSP--Y--GFPLKEELRPRLNHKAVGDPRC--KLKMGDVVELTPAIP 667 (703)
Q Consensus 604 v~~LP~GsTvlDfAy~i~~~~~~~~~--~--g~~~~~~igakVNg~~v~~l~~--~Lk~GDvVEIit~~p 667 (703)
.+++| |+|+.|+.-.+......... + +......+..-|||+.+. .+. +|++||.|.|+|...
T Consensus 19 ~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~-~~~~~~l~dgdev~i~Ppvs 86 (88)
T TIGR01687 19 EIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVD-WGLGTELKDGDVVAIFPPVS 86 (88)
T ss_pred EEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecC-ccCCCCCCCCCEEEEeCCCc
Confidence 56778 99999999777433221000 0 001122355679999985 555 999999999998543
No 55
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=82.04 E-value=1.8 Score=37.64 Aligned_cols=60 Identities=23% Similarity=0.286 Sum_probs=38.2
Q ss_pred eEecC-CCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 005297 604 VQEFP-TSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 604 v~~LP-~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~ 666 (703)
.++++ .|+|+.|+--.+-.....+.. ......+..-||++.+. .++.|++||.|-|+|-.
T Consensus 18 ~~~v~~~~~tv~~l~~~L~~~~~~~~~--~~~~~~~~~aVN~~~~~-~~~~l~dgDeVai~PPV 78 (81)
T PRK11130 18 ALELAADFPTVEALRQHLAQKGDRWAL--ALEDGKLLAAVNQTLVS-FDHPLTDGDEVAFFPPV 78 (81)
T ss_pred eEEecCCCCCHHHHHHHHHHhCccHHh--hhcCCCEEEEECCEEcC-CCCCCCCCCEEEEeCCC
Confidence 34454 479999998666332211100 00011234568999984 89999999999999843
No 56
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=81.05 E-value=5.3 Score=39.42 Aligned_cols=58 Identities=21% Similarity=0.286 Sum_probs=35.0
Q ss_pred CcchhHHHHHHHHHHH----HhC-----CCH-HHHHHHHhhccccccC--CC----HHHHHHh--hCHHHHHHHHH
Q 005297 220 GDPYLLHCVETAMLLA----AIG-----ANS-TVVAAGLLHDTLDDAF--LS----YDYIFRT--FGAGVADLVEG 277 (703)
Q Consensus 220 GePYI~Hpl~VA~ILa----~lg-----~D~-~tIaAALLHDvVEDT~--vT----~eeI~~~--FG~eVA~LV~g 277 (703)
.+..+.|.+.|+.+.. .++ .|. ...+||||||+-.... .. -.++.+. |.++++.+|..
T Consensus 11 ~~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~~~~~~~H~~~G~~iL~~~g~~~~i~~iI~~ 86 (164)
T TIGR00295 11 DESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRARTHGFEHFVKGAEILRKEGVDEKIVRIAER 86 (164)
T ss_pred CccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3456789999887543 344 453 5678999999866321 11 1123333 45678887753
No 57
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=75.75 E-value=4.2 Score=42.33 Aligned_cols=39 Identities=28% Similarity=0.316 Sum_probs=30.4
Q ss_pred cCcchhHHHHHHHHHHH----HhCCCHHH-HHHHHhhccccccC
Q 005297 219 SGDPYLLHCVETAMLLA----AIGANSTV-VAAGLLHDTLDDAF 257 (703)
Q Consensus 219 sGePYI~Hpl~VA~ILa----~lg~D~~t-IaAALLHDvVEDT~ 257 (703)
+|..-+.|.++||.+.. +.|.|.++ ..||||||+..-..
T Consensus 33 ~~~~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~ 76 (222)
T COG1418 33 YGQHVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAID 76 (222)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccccc
Confidence 77788999999997554 55888764 57889999987543
No 58
>PRK10119 putative hydrolase; Provisional
Probab=75.31 E-value=12 Score=39.41 Aligned_cols=52 Identities=13% Similarity=0.094 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHH----HhCCCHH-HHHHHHhhcccc
Q 005297 200 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 254 (703)
Q Consensus 200 ~I~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa----~lg~D~~-tIaAALLHDvVE 254 (703)
.+.++.+|..+...+. .+|.. +.|..+|..... .-+.|.. +.+||||||+..
T Consensus 6 ~~~~~~~~v~~~l~~~--~~~HD-~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 6 WQAQFENWLKNHHQHQ--DAAHD-ICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHHHHHHHHHhhcC--CCccC-hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 3445555655544432 22222 567766654333 2356654 668999999975
No 59
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=74.32 E-value=1.3 Score=49.50 Aligned_cols=47 Identities=11% Similarity=0.098 Sum_probs=35.4
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEE
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVV 660 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvV 660 (703)
|....+.|||++||++.||.+ | +..++.|+ +.|.+ .-+|.+++||||
T Consensus 320 Dfe~~fi~aevi~~~d~i~~~-~--------~~~Akeag-~~r~~-GkdY~vqdGDVi 366 (372)
T COG0012 320 DFEKGFIRAEVISYADLIHYG-G--------EAAAKEAG-KRRLE-GKDYIVQDGDVI 366 (372)
T ss_pred chhhccccceEeeHHHHHhcC-c--------HHHHHHhc-ceeec-cccceecCCCEE
Confidence 477889999999999999987 2 23344443 33335 589999999999
No 60
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=72.56 E-value=3.2 Score=33.92 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=20.7
Q ss_pred ccccCCeecCCCCCcCCCCCEEEE
Q 005297 639 RPRLNHKAVGDPRCKLKMGDVVEL 662 (703)
Q Consensus 639 gakVNg~~v~~l~~~Lk~GDvVEI 662 (703)
.++|||+.+...++.|+.||+|+|
T Consensus 35 ~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 35 EVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred CEEECCEEccCCCCCCCCCCEEEe
Confidence 468999998447999999999986
No 61
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=72.30 E-value=2.2 Score=33.15 Aligned_cols=22 Identities=45% Similarity=0.686 Sum_probs=20.1
Q ss_pred ccccCCeecCCCCCcCCCCCEE
Q 005297 639 RPRLNHKAVGDPRCKLKMGDVV 660 (703)
Q Consensus 639 gakVNg~~v~~l~~~Lk~GDvV 660 (703)
+++|||+.+.++++.++.||+|
T Consensus 27 ~V~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 27 RVKVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp TEEETTEEESSTTSBESTTEEE
T ss_pred EEEECCEEEcCCCCCCCCcCCC
Confidence 5799999997799999999987
No 62
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=71.18 E-value=3.2 Score=36.61 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=26.4
Q ss_pred chhHHHHHHHHHHHHhCC--------CHHHHHHHHhhcccccc
Q 005297 222 PYLLHCVETAMLLAAIGA--------NSTVVAAGLLHDTLDDA 256 (703)
Q Consensus 222 PYI~Hpl~VA~ILa~lg~--------D~~tIaAALLHDvVEDT 256 (703)
+...|.+.|+.+...+.. .....+||||||+-+..
T Consensus 2 ~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 2 HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred chHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 457899999887765432 35678999999998854
No 63
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=66.79 E-value=6.4 Score=39.48 Aligned_cols=35 Identities=46% Similarity=0.654 Sum_probs=29.5
Q ss_pred ccCcch--hHHHHHHHHHHHHhCCCHHHHHHHHhhcc
Q 005297 218 ASGDPY--LLHCVETAMLLAAIGANSTVVAAGLLHDT 252 (703)
Q Consensus 218 ksGePY--I~Hpl~VA~ILa~lg~D~~tIaAALLHDv 252 (703)
.+|+|. ..|.++.|.+...-|.+.+.|+||||||+
T Consensus 24 y~ge~VTq~eHaLQ~AtlAerdGa~~~lVaaALLHDi 60 (186)
T COG4341 24 YSGEPVTQLEHALQCATLAERDGADTALVAAALLHDI 60 (186)
T ss_pred cccCcchhhhhHHHHhHHHHhcCCcHHHHHHHHHHhH
Confidence 477775 57999988766677999999999999986
No 64
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=64.32 E-value=5 Score=35.42 Aligned_cols=30 Identities=27% Similarity=0.241 Sum_probs=25.7
Q ss_pred cccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 005297 636 EELRPRLNHKAVGDPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 636 ~~igakVNg~~v~~l~~~Lk~GDvVEIit~~ 666 (703)
.++.+.+|...+ +++++|+.||+|-|+|..
T Consensus 52 ~~v~~~~~~~~~-~~~t~L~dGDeVa~~PPV 81 (84)
T COG1977 52 IVVNAANNEFLV-GLDTPLKDGDEVAFFPPV 81 (84)
T ss_pred ceEEeeeceeec-cccccCCCCCEEEEeCCC
Confidence 457788899999 599999999999999843
No 65
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=62.26 E-value=12 Score=33.78 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=38.7
Q ss_pred EecC--CCCCHhhhhHhhccCCCCCCC--C--CCCCccccccccCCeecC---CCCCcCCCCCEEEEeeCC
Q 005297 605 QEFP--TSSTVMDLLERAGRGSSRWSP--Y--GFPLKEELRPRLNHKAVG---DPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 605 ~~LP--~GsTvlDfAy~i~~~~~~~~~--~--g~~~~~~igakVNg~~v~---~l~~~Lk~GDvVEIit~~ 666 (703)
.++| .|+|+.|+.-.+-........ + +-.+...+-.-|||+.+. .++++|+.||.|.|+|+.
T Consensus 21 ~~~~~~~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v 91 (94)
T cd01764 21 VVLDGEKPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTL 91 (94)
T ss_pred EeccCCCCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCC
Confidence 3456 589999998655222111000 0 011233456779999762 378999999999999854
No 66
>PRK03826 5'-nucleotidase; Provisional
Probab=60.79 E-value=20 Score=36.65 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=24.5
Q ss_pred cchhHHHHHHHHHHH---H-----h--CCCH-HHHHHHHhhccccc
Q 005297 221 DPYLLHCVETAMLLA---A-----I--GANS-TVVAAGLLHDTLDD 255 (703)
Q Consensus 221 ePYI~Hpl~VA~ILa---~-----l--g~D~-~tIaAALLHDvVED 255 (703)
|.--.|-+.||.+.- . . +.|. .++..||+||+.|-
T Consensus 27 EsVAeHs~~vAliA~~La~i~~~~~~~~vd~~rv~~~aL~HDl~E~ 72 (195)
T PRK03826 27 ENVSEHSLQVAMVAHALAVIKNRKFGGNLNAERIALLAMYHDASEV 72 (195)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcchHHH
Confidence 456789999987642 2 1 2454 46778999999993
No 67
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=57.19 E-value=16 Score=29.98 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=23.4
Q ss_pred cchhHHHHHHHHHHHH----hCCCHH-HHHHHHhhcccc
Q 005297 221 DPYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLD 254 (703)
Q Consensus 221 ePYI~Hpl~VA~ILa~----lg~D~~-tIaAALLHDvVE 254 (703)
.+-..|.+.|+..... +++|.+ ...||||||+-.
T Consensus 3 ~~~~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDiG~ 41 (80)
T TIGR00277 3 QNVLQHSLEVAKLAEALARELGLDVELARRGALLHDIGK 41 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccCC
Confidence 3446788888775543 466664 678999999744
No 68
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=56.88 E-value=3.3 Score=37.12 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=34.1
Q ss_pred cceEecCCCCCHhhhhHhhccCCCCCCCCCCCCc------------cccccccCCe--ecCCCCCcCCCCCEEEEe
Q 005297 602 MSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLK------------EELRPRLNHK--AVGDPRCKLKMGDVVELT 663 (703)
Q Consensus 602 ~~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~------------~~igakVNg~--~v~~l~~~Lk~GDvVEIi 663 (703)
.+.-.+++|+|+.+.|-.||+|..+ ||.-- ....+|-.|+ .. .-+|.+++||+|.+.
T Consensus 12 vRaWti~~G~~Ap~aAG~IHsDfek----gFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~e-GK~YivqDGDIi~f~ 82 (84)
T PF06071_consen 12 VRAWTIRKGTTAPQAAGVIHSDFEK----GFIRAEVISYDDFVEYGSEAAAKEAGKLRLE-GKDYIVQDGDIIHFR 82 (84)
T ss_dssp EEEEEEETT-BHHHHHHCC-THHHH----HEEEEEEEEHHHHHHHTSHHHHHHTT-SEEE-ETT-B--TTEEEEEE
T ss_pred EEEEEccCCCCHHHhHhHHHHHHHh----hceEEEEEcHHHHHHcCCHHHHHHcCCcccc-CCceeEeCCCEEEEE
Confidence 4667899999999999999998654 21000 1112444555 33 478999999999874
No 69
>smart00363 S4 S4 RNA-binding domain.
Probab=56.24 E-value=9.2 Score=29.31 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=21.3
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEee
Q 005297 639 RPRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 639 gakVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
..+|||+.+...++.|+.||+|++--
T Consensus 27 ~i~vng~~~~~~~~~l~~gd~i~~~~ 52 (60)
T smart00363 27 RVKVNGKKVTKPSYIVKPGDVISVRG 52 (60)
T ss_pred CEEECCEEecCCCeEeCCCCEEEEcc
Confidence 45899999844899999999998754
No 70
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=55.56 E-value=13 Score=32.55 Aligned_cols=63 Identities=25% Similarity=0.291 Sum_probs=36.3
Q ss_pred EEEEeCCccceEecCCCCCHhhhhHhhccCCCCCCCC----------CCCCccccccccCCee-cCCCCCcCCCCCEEE
Q 005297 594 VIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPY----------GFPLKEELRPRLNHKA-VGDPRCKLKMGDVVE 661 (703)
Q Consensus 594 V~~~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~~~~~----------g~~~~~~igakVNg~~-v~~l~~~Lk~GDvVE 661 (703)
-|..+| ..++.++|.|+++++.+.|..+...--+ | .-..|+ +.|||+. |+.=.++++.|.+|+
T Consensus 5 ~i~idG---~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g-~C~~C~-Vev~g~~~v~AC~t~v~~GM~V~ 78 (82)
T PF13510_consen 5 TITIDG---KPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIG-SCRLCL-VEVDGEPNVRACSTPVEDGMVVE 78 (82)
T ss_dssp EEEETT---EEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSST-T-SS-E-EEESSEEEEETTT-B--TTEEEE
T ss_pred EEEECC---EEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCcc-ccceEE-EEECCCcceEcccCCCcCCcEEE
Confidence 355666 5788999999999998865554321100 1 001122 6789998 765678999998886
No 71
>PRK14137 recX recombination regulator RecX; Provisional
Probab=53.37 E-value=15 Score=37.59 Aligned_cols=105 Identities=18% Similarity=0.268 Sum_probs=63.7
Q ss_pred hHHHHHHhhhhhccCcchh--hHHHHHHHhh-hhhhhHHHHHHHHHHH--HHhcCC-ceecccccccChHHHHHHHhhcC
Q 005297 360 TWKVQLENLCFKHLNPDQH--TELSSKLVEC-FDEAMVTSAIEKLEQA--LKDKNI-SFLVLCGRHKSLYSIHCKMLKKK 433 (703)
Q Consensus 360 ~iK~ELEDLafryL~P~~y--~~i~~~l~~~-~~e~~i~~v~~~L~~~--L~~~gI-~~~~V~gR~K~~ySI~~Km~rk~ 433 (703)
+....+.+.|++||.-..| .+|.++|.+. +.++.|+.+++.|++. |++.-. .. ....+-+.+.-|..+|++||
T Consensus 37 e~~~~~~~~Al~~Ls~R~rS~~ELr~KL~~kg~~~e~Ie~vI~rL~e~gyLDD~rfAe~-~~~~k~~Gp~rI~~eL~qKG 115 (195)
T PRK14137 37 EAREALLAYAFRALAARAMTAAELRAKLERRSEDEALVTEVLERVQELGYQDDAQVARA-ENSRRGVGALRVRQTLRRRG 115 (195)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHH-HHHhcCchHHHHHHHHHHcC
Confidence 3445566667777766665 4677777665 3556666666665541 111100 01 12234568888999999999
Q ss_pred CCCCcccccEEEEEEECCHHHHHHHHHHHHhhccC
Q 005297 434 LTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAE 468 (703)
Q Consensus 434 ~~~~~I~Dl~giRIIv~~~~DCy~vlgiIh~~f~p 468 (703)
++-+-|.+.+.- +...++...+..++.+.|..
T Consensus 116 I~~~lI~~al~~---~d~ede~e~a~~l~~KK~~~ 147 (195)
T PRK14137 116 VEETLIEETLAA---RDPQEEQQEARNLLERRWSS 147 (195)
T ss_pred CCHHHHHHHHHh---cCchhHHHHHHHHHHHhccc
Confidence 986666665431 13345677788888887764
No 72
>PRK14136 recX recombination regulator RecX; Provisional
Probab=51.79 E-value=12 Score=40.86 Aligned_cols=93 Identities=15% Similarity=0.197 Sum_probs=52.1
Q ss_pred hhhccCcchh--hHHHHHHHhhh-hhhhHHHHHHHHHHHHHhcCCc----e--eccccc--ccChHHHHHHHhhcCCCCC
Q 005297 369 CFKHLNPDQH--TELSSKLVECF-DEAMVTSAIEKLEQALKDKNIS----F--LVLCGR--HKSLYSIHCKMLKKKLTMD 437 (703)
Q Consensus 369 afryL~P~~y--~~i~~~l~~~~-~e~~i~~v~~~L~~~L~~~gI~----~--~~V~gR--~K~~ySI~~Km~rk~~~~~ 437 (703)
|++||--..| .+|.++|.+.. .++.|+.+++.|++ .|.- | ..|..| .|.+.-|..+|++||++-+
T Consensus 168 AL~lLSrReRSe~ELr~KL~kkG~~ee~IE~VIerLke----~gYLDDeRFAesyVr~R~~kkGp~rIrqELrQKGId~e 243 (309)
T PRK14136 168 ALGYLSRREYSRAELARKLAPYADESDSVEPLLDALER----EGWLSDARFAESLVHRRASRVGSARIVSELKRHAVGDA 243 (309)
T ss_pred HHHHhhcccccHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCcCHHHHHHHHHHHHhhchhHHHHHHHHHHcCCCHH
Confidence 4444444444 45666665542 34455555554443 2220 0 012222 2567889999999999866
Q ss_pred cccccEEEEEEECCHHHHHHHHHHHHhhccCC
Q 005297 438 EIHDIYGLRLIVENEEDCYQALRVVHQLWAEV 469 (703)
Q Consensus 438 ~I~Dl~giRIIv~~~~DCy~vlgiIh~~f~p~ 469 (703)
-|.+.+. .+ .+++...+..++.+.|...
T Consensus 244 LIEqALe--ei--eEDE~E~A~~L~eKK~~~~ 271 (309)
T PRK14136 244 LVESVGA--QL--RETEFERAQAVWRKKFGAL 271 (309)
T ss_pred HHHHHHH--hc--cHhHHHHHHHHHHHHhccc
Confidence 6666554 11 3456677777887777543
No 73
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=51.08 E-value=35 Score=34.87 Aligned_cols=99 Identities=18% Similarity=0.149 Sum_probs=52.0
Q ss_pred ccCcchhHHHHHHHHHHH-------HhC--CC-HHHHHHHHhhccccc--cCCC--HHHHHHhhCHHHHHHHHHhhcccc
Q 005297 218 ASGDPYLLHCVETAMLLA-------AIG--AN-STVVAAGLLHDTLDD--AFLS--YDYIFRTFGAGVADLVEGVSKLSQ 283 (703)
Q Consensus 218 ksGePYI~Hpl~VA~ILa-------~lg--~D-~~tIaAALLHDvVED--T~vT--~eeI~~~FG~eVA~LV~gVTKl~~ 283 (703)
..++.-..|-+.||.+-- ..| .+ ...+..||+||..|- ++++ ............-+..+.+.+..-
T Consensus 29 ~~~eSvaeHs~~va~la~~la~~~~~~~~~vn~~k~~~~AL~HD~~E~~~GDi~tp~k~~~~~~~~~~~e~e~~~~~~~~ 108 (193)
T COG1896 29 WNPESVAEHSFRVAILALLLADILNAKGGEVNPEKVALMALVHDLPEALTGDIPTPVKYARAGLYKEEEEAEEAAIHLLF 108 (193)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHhcccHHHHhCCCCCchhhhcchHHHHHHHHHHHHHHccc
Confidence 356788889888775432 223 34 347888999999995 2332 122222233333333333322211
Q ss_pred cchhHhhccccchHHHHHHHHHHHhhcCCceeehhhhhhhHhhc
Q 005297 284 LSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNM 327 (703)
Q Consensus 284 l~~~~r~~~~~~~~~qaE~lRkmLLAmaD~RVvLIKLADRLhNM 327 (703)
+. + ..-.+-+|.. +.-.+..+.+||.||+|..+
T Consensus 109 -~~-p--------~e~~~~~~~~-~~~~s~ea~~vk~aDkl~~~ 141 (193)
T COG1896 109 -GL-P--------EELLELFREY-EKRSSLEARIVKDADKLELL 141 (193)
T ss_pred -CC-c--------HHHHHHHHHH-HccCCHHHHHHHHHHHHHHH
Confidence 00 0 0011222222 22237889999999999888
No 74
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=50.71 E-value=73 Score=29.08 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcC-----chhHHHHHHhhhhhccCcchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHhcC
Q 005297 335 LCKRQRFAKETLEIFVPLANRLG-----ISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKN 409 (703)
Q Consensus 335 ~ekq~riA~ETl~IYaPLA~RLG-----i~~iK~ELEDLafryL~P~~y~~i~~~l~~~~~e~~i~~v~~~L~~~L~~~g 409 (703)
++..+.+|...=.=|-.+|.+|| +.. .+++.+..+|-.-..|+.+.+.|......+--+.-+..|-++|.+.+
T Consensus 2 ~~~~q~~~~nvGr~WK~laR~Lg~~cral~d--~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~ 79 (90)
T cd08780 2 PADQQHFAKSVGKKWKPVGRSLQKNCRALRD--PAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKKATLQRLVQALEENG 79 (90)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHcccccccch--hHHHHHHhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHcc
Confidence 56677788877778899999999 654 46777777765555677776666554321111233455666677766
Q ss_pred Cc
Q 005297 410 IS 411 (703)
Q Consensus 410 I~ 411 (703)
++
T Consensus 80 l~ 81 (90)
T cd08780 80 LT 81 (90)
T ss_pred ch
Confidence 65
No 75
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=48.68 E-value=10 Score=43.26 Aligned_cols=30 Identities=27% Similarity=0.253 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHh----CC--CH--------HHHHHHHhhccc
Q 005297 224 LLHCVETAMLLAAI----GA--NS--------TVVAAGLLHDTL 253 (703)
Q Consensus 224 I~Hpl~VA~ILa~l----g~--D~--------~tIaAALLHDvV 253 (703)
+.|.+.|..+...+ +. +. .+.+||||||+=
T Consensus 53 FeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDIG 96 (421)
T COG1078 53 FEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDIG 96 (421)
T ss_pred cchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHccC
Confidence 78999988766543 21 11 488999999973
No 76
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=48.01 E-value=10 Score=43.63 Aligned_cols=84 Identities=18% Similarity=0.236 Sum_probs=62.9
Q ss_pred EEEeCCccceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCCCcc----
Q 005297 595 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKS---- 670 (703)
Q Consensus 595 ~~~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~p~~~---- 670 (703)
++|+|. .+-..--+.||.|.|.. --+. .+.++-+||||.+- |++.+|+ ||-.|+++-..+.+
T Consensus 4 ~Lpdg~--~~~~~~w~ttp~~ia~~-s~~l---------a~~~~~~~vn~~~~-Dl~rp~e-~~~lell~f~~~~~k~vf 69 (560)
T KOG1637|consen 4 VLPDGK--VVEGVSWETTPYDIACQ-SKGL---------ADDAVIAKVNGVLW-DLDRPLE-GDCLELLKFDDDEGKDVF 69 (560)
T ss_pred ecCCcc--eeeeeeccCChhHHhhh-ccch---------hhhhHHHhhcCcee-ccCCcch-hhHHHHccCCCcccceee
Confidence 467665 34556788999999987 2222 34678899999987 7999998 66699998544333
Q ss_pred H----HHHHHHHHHHHHcccCcCCCC
Q 005297 671 L----TEYREEIQRMYERGLAVSNTG 692 (703)
Q Consensus 671 l----~~~r~~i~rm~~~~~~~~~~~ 692 (703)
| ..+-++..+.|-.-+..|||.
T Consensus 70 whssahvlg~a~e~~~g~~lc~Gpp~ 95 (560)
T KOG1637|consen 70 WHSSAHVLGEALEQEYGAHLCIGPPI 95 (560)
T ss_pred eehhhhHhhHHHHHhcCeeEeeCCCC
Confidence 5 367899999999999999975
No 77
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=47.45 E-value=73 Score=34.92 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=40.9
Q ss_pred EEEEEeCCccceEec-CCCCCHhhhhHhhccCCCCCCCCCCCC---ccc--cccccCCe--ecCCCCCcCCCCCEEE
Q 005297 593 FVIMIENDKMSVQEF-PTSSTVMDLLERAGRGSSRWSPYGFPL---KEE--LRPRLNHK--AVGDPRCKLKMGDVVE 661 (703)
Q Consensus 593 fV~~~~g~~~~v~~L-P~GsTvlDfAy~i~~~~~~~~~~g~~~---~~~--igakVNg~--~v~~l~~~Lk~GDvVE 661 (703)
..|+++| .-+++ |+|.|++|.|.+.|-.+..+ .|-..+ -.| --+.|+|+ +|+.=.++++.|-+|+
T Consensus 69 ~~I~IDG---k~VeV~~~G~TILeAAr~~GI~IPtL-Cy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~ 141 (297)
T PTZ00305 69 AIMFVNK---RPVEIIPQEENLLEVLEREGIRVPKF-CYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSII 141 (297)
T ss_pred eEEEECC---EEEEecCCCChHHHHHHHcCCCcCcc-ccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEE
Confidence 3566676 57788 99999999998876665432 111000 011 11456664 6655678888888877
No 78
>PRK00106 hypothetical protein; Provisional
Probab=47.00 E-value=49 Score=39.07 Aligned_cols=37 Identities=35% Similarity=0.472 Sum_probs=28.6
Q ss_pred cCcchhHHHHHHHHHH----HHhCCC-HHHHHHHHhhccccc
Q 005297 219 SGDPYLLHCVETAMLL----AAIGAN-STVVAAGLLHDTLDD 255 (703)
Q Consensus 219 sGePYI~Hpl~VA~IL----a~lg~D-~~tIaAALLHDvVED 255 (703)
.|...+.|.++||.+. ..+|+| ...-.||||||+=.-
T Consensus 347 y~qnl~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~ 388 (535)
T PRK00106 347 YGQNVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKA 388 (535)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCc
Confidence 4667889999999764 367888 456789999998654
No 79
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=46.35 E-value=95 Score=27.53 Aligned_cols=75 Identities=19% Similarity=0.138 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHhhhhhccCcchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCc
Q 005297 333 LPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNIS 411 (703)
Q Consensus 333 ~~~ekq~riA~ETl~IYaPLA~RLGi~~iK~ELEDLafryL~P~~y~~i~~~l~~~~~e~~i~~v~~~L~~~L~~~gI~ 411 (703)
++.+.-..+|...-.=+-+||.+||+.. .+++.+- .-+|+.+....+.|.......--+.-.+.|.+.|.+.|..
T Consensus 5 ~t~~~l~~ia~~iG~~Wk~Lar~LGls~--~dI~~i~--~~~~~~~eq~~~mL~~W~~r~g~~AT~~~L~~aL~~~~~~ 79 (86)
T cd08318 5 VTGEQITVFANKLGEDWKTLAPHLEMKD--KEIRAIE--SDSEDIKMQAKQLLVAWQDREGSQATPETLITALNAAGLN 79 (86)
T ss_pred CCHHHHHHHHHHHhhhHHHHHHHcCCCH--HHHHHHH--hcCCCHHHHHHHHHHHHHHhcCccccHHHHHHHHHHcCcH
Confidence 3445555677766677889999999985 4555433 3467777777777765432211233456677778777764
No 80
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=45.89 E-value=36 Score=35.57 Aligned_cols=101 Identities=13% Similarity=0.136 Sum_probs=48.9
Q ss_pred cchhHHHHHHHHHHHHh-------C--CCH-HHHHHHHhhccccccCCCHHHHH---HhhCHHHHHHHHHhhcccccchh
Q 005297 221 DPYLLHCVETAMLLAAI-------G--ANS-TVVAAGLLHDTLDDAFLSYDYIF---RTFGAGVADLVEGVSKLSQLSKL 287 (703)
Q Consensus 221 ePYI~Hpl~VA~ILa~l-------g--~D~-~tIaAALLHDvVEDT~vT~eeI~---~~FG~eVA~LV~gVTKl~~l~~~ 287 (703)
+.--.|.+.||.+..-+ | .|. .....||.||..|-- | -||. +.+.++...++..|.+.-.-..+
T Consensus 28 ~nVA~HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~E~F--t-GDI~TPVKy~tPelr~~~~~VE~~m~~~~i 104 (215)
T PF12917_consen 28 HNVAEHSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYPEIF--T-GDIKTPVKYATPELREMLAQVEEEMTENFI 104 (215)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGGGGT--S-----S-SSSS-HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccHHHH--c-CCCCCcccccCHHHHHHHHHHHHHHHHHHH
Confidence 44557998888765422 3 344 345789999999952 1 1111 12334444444443332110000
Q ss_pred HhhccccchHHHHHHHHHHHhhcCC--ceeehhhhhhhHhhcc
Q 005297 288 ARENNTASKTVEADRLHTMFLAMAD--ARAVLIKLADRLHNMM 328 (703)
Q Consensus 288 ~r~~~~~~~~~qaE~lRkmLLAmaD--~RVvLIKLADRLhNMR 328 (703)
.. . ......+.+|.++.--.| ....+||.||.++-+-
T Consensus 105 ~~--~--iP~e~q~~Y~~~l~E~KDdt~EG~Iv~~ADkidal~ 143 (215)
T PF12917_consen 105 KK--E--IPEEFQEAYRRRLKEGKDDTLEGQIVKAADKIDALY 143 (215)
T ss_dssp HH--H--S-GGGHHHHHHHHS---SSSHHHHHHHHHHHHHHHH
T ss_pred Hh--h--CCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHH
Confidence 00 0 001123455665543333 7889999999998764
No 81
>PRK11507 ribosome-associated protein; Provisional
Probab=45.81 E-value=17 Score=31.65 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=20.1
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 005297 639 RPRLNHKAVGDPRCKLKMGDVVELT 663 (703)
Q Consensus 639 gakVNg~~v~~l~~~Lk~GDvVEIi 663 (703)
.++|||+.-.--..+|+.||+|++-
T Consensus 38 ~V~VNGeve~rRgkKl~~GD~V~~~ 62 (70)
T PRK11507 38 QVKVDGAVETRKRCKIVAGQTVSFA 62 (70)
T ss_pred ceEECCEEecccCCCCCCCCEEEEC
Confidence 4789999754456899999999984
No 82
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B.
Probab=45.57 E-value=33 Score=33.95 Aligned_cols=96 Identities=20% Similarity=0.214 Sum_probs=49.0
Q ss_pred CcchhHHHHHHHHHH---H-HhC--CCH-HHHHHHHhhccccc-c-CCCHHH--HHHhhCHHHHHHHHHhhcccccchhH
Q 005297 220 GDPYLLHCVETAMLL---A-AIG--ANS-TVVAAGLLHDTLDD-A-FLSYDY--IFRTFGAGVADLVEGVSKLSQLSKLA 288 (703)
Q Consensus 220 GePYI~Hpl~VA~IL---a-~lg--~D~-~tIaAALLHDvVED-T-~vT~ee--I~~~FG~eVA~LV~gVTKl~~l~~~~ 288 (703)
.+.--.|-..||.+. + ..+ .|. .++..+|+||+.|- + +++.-. ....+-..-...++.+..+ ++.
T Consensus 20 ~EsVAeHS~~vA~~a~~la~~~~~~~d~~k~~~~aL~HDl~E~~~GDi~~~~~~~~~~~~~~E~~a~~~l~~~--Lp~-- 95 (165)
T PF13023_consen 20 PESVAEHSWRVALIALLLAEEAGPDLDIEKVVKMALFHDLPEAITGDIPPPDGVDKEEKEEREEAAIEELFSL--LPE-- 95 (165)
T ss_dssp G-BHHHHHHHHHHHHHHHHHHHH-HC-HHHHHHHHHHTTTTHHHH----HHH-CCHHHHHHHHHHHHHHHCTT--SSC--
T ss_pred CccHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHhhccchhhhcCCCCCcccchHHHHHHHHHHHHHHHHHH--hhh--
Confidence 456678999988754 2 234 665 58888899999994 2 343322 0111112222222222221 110
Q ss_pred hhccccchHHHHHHHHHHHhh---cCCceeehhhhhhhHhhcc
Q 005297 289 RENNTASKTVEADRLHTMFLA---MADARAVLIKLADRLHNMM 328 (703)
Q Consensus 289 r~~~~~~~~~qaE~lRkmLLA---maD~RVvLIKLADRLhNMR 328 (703)
...+.++.++.- ...+.+.++|-+|+|.-+-
T Consensus 96 ---------~l~~~~~~l~~E~e~~~s~ea~~vk~~D~l~~~l 129 (165)
T PF13023_consen 96 ---------ELQEELKELWEEFEEGESPEAKLVKAADKLEPLL 129 (165)
T ss_dssp ---------HHHHHHHHHHHHHHHT-SHHHHHHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhHHH
Confidence 112334444332 2378889999999997764
No 83
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=45.11 E-value=53 Score=38.51 Aligned_cols=35 Identities=37% Similarity=0.542 Sum_probs=25.9
Q ss_pred CcchhHHHHHHHHHHH----HhCCCHH-HHHHHHhhcccc
Q 005297 220 GDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 254 (703)
Q Consensus 220 GePYI~Hpl~VA~ILa----~lg~D~~-tIaAALLHDvVE 254 (703)
|...+.|.++||.+.. .+|+|++ ...||||||+=.
T Consensus 327 ~~~~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK 366 (514)
T TIGR03319 327 GQNVLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGK 366 (514)
T ss_pred CccHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCc
Confidence 3346789999997643 5688864 456999999854
No 84
>PRK12704 phosphodiesterase; Provisional
Probab=45.11 E-value=40 Score=39.56 Aligned_cols=36 Identities=36% Similarity=0.498 Sum_probs=26.2
Q ss_pred cCcchhHHHHHHHHHHH----HhCCCHH-HHHHHHhhcccc
Q 005297 219 SGDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 254 (703)
Q Consensus 219 sGePYI~Hpl~VA~ILa----~lg~D~~-tIaAALLHDvVE 254 (703)
.+...+.|.++||.+.. .+|+|.+ ...||||||+=.
T Consensus 332 ~~qn~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK 372 (520)
T PRK12704 332 YGQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGK 372 (520)
T ss_pred CCCcHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCc
Confidence 34457889999987543 5688754 568999999755
No 85
>PRK12705 hypothetical protein; Provisional
Probab=45.10 E-value=59 Score=38.17 Aligned_cols=37 Identities=38% Similarity=0.501 Sum_probs=27.9
Q ss_pred cCcchhHHHHHHHHHHH----HhCCCHH-HHHHHHhhccccc
Q 005297 219 SGDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLDD 255 (703)
Q Consensus 219 sGePYI~Hpl~VA~ILa----~lg~D~~-tIaAALLHDvVED 255 (703)
.|...+.|.++||.+.. .+|+|++ ...||||||+=.-
T Consensus 320 ygqnvl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK~ 361 (508)
T PRK12705 320 YGQNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKS 361 (508)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCc
Confidence 35557899999998553 5688754 5689999999763
No 86
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=44.50 E-value=11 Score=32.23 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=14.1
Q ss_pred ccccCCeecCCCCCcCCCCCEEEE
Q 005297 639 RPRLNHKAVGDPRCKLKMGDVVEL 662 (703)
Q Consensus 639 gakVNg~~v~~l~~~Lk~GDvVEI 662 (703)
.++|||+....-..+|+.||+|++
T Consensus 34 ~V~VNGe~e~rrg~Kl~~GD~V~~ 57 (65)
T PF13275_consen 34 EVKVNGEVETRRGKKLRPGDVVEI 57 (65)
T ss_dssp HHEETTB----SS----SSEEEEE
T ss_pred ceEECCEEccccCCcCCCCCEEEE
Confidence 478999987556799999999998
No 87
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=43.99 E-value=17 Score=33.71 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=22.0
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEee
Q 005297 639 RPRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 639 gakVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
.+++||+.+. +.+.++.||+|+|-.
T Consensus 35 rV~vNG~~aK-pS~~VK~GD~l~i~~ 59 (100)
T COG1188 35 RVKVNGQRAK-PSKEVKVGDILTIRF 59 (100)
T ss_pred eEEECCEEcc-cccccCCCCEEEEEe
Confidence 3689999995 899999999999975
No 88
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=43.85 E-value=25 Score=34.20 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=24.5
Q ss_pred cchhHHHHHHHHHHH----HhCCCH-HHHHHHHhhcccc
Q 005297 221 DPYLLHCVETAMLLA----AIGANS-TVVAAGLLHDTLD 254 (703)
Q Consensus 221 ePYI~Hpl~VA~ILa----~lg~D~-~tIaAALLHDvVE 254 (703)
+.-+.|.+.||.+.. .++.|+ ..-+||||||+=.
T Consensus 7 ~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk 45 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAK 45 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 345789999887543 346654 5678999999876
No 89
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=42.76 E-value=26 Score=35.94 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=27.4
Q ss_pred cchhHHHHHHHHHHHH----hCCCH-HHHHHHHhhccccccC
Q 005297 221 DPYLLHCVETAMLLAA----IGANS-TVVAAGLLHDTLDDAF 257 (703)
Q Consensus 221 ePYI~Hpl~VA~ILa~----lg~D~-~tIaAALLHDvVEDT~ 257 (703)
++-+.|+++||....+ +++|. ..-+||+|||.--+-+
T Consensus 16 ~kR~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~p 57 (187)
T COG1713 16 EKRFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKELP 57 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCC
Confidence 3458999999886543 47775 4679999999877644
No 90
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=42.67 E-value=85 Score=31.74 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHH-HHHHhhcc
Q 005297 200 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVV-AAGLLHDT 252 (703)
Q Consensus 200 ~I~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D~~tI-aAALLHDv 252 (703)
.|.+++++....-...--.-.+|-|.|.++.|+....-.-|.+-+ .+||+||.
T Consensus 74 ~i~ec~ell~~~vDESDPDlDepni~Ha~QtAE~iR~~~Pd~dWlHLtaLiHDL 127 (204)
T KOG1573|consen 74 TIWECCELLNEVVDESDPDLDEPNIQHALQTAEAIRKDYPDEDWLHLTALIHDL 127 (204)
T ss_pred eHHHHHHHHHhhhcccCCCCchHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 477777776665443322347899999999999887655565544 78899996
No 91
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=42.20 E-value=41 Score=35.85 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHH-HHHHhhcc
Q 005297 200 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVV-AAGLLHDT 252 (703)
Q Consensus 200 ~I~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D~~tI-aAALLHDv 252 (703)
-|.+|+++....-..--.....|=|.|.+++|+....-.-+++-+ .+||+||.
T Consensus 40 ti~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~dW~~LtGLiHDL 93 (253)
T PF05153_consen 40 TIWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPDWMQLTGLIHDL 93 (253)
T ss_dssp -HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-HHHHHHHHHTTG
T ss_pred eHHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcchhhheehhccc
Confidence 466777776555544333456799999999999988765555544 79999997
No 92
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=42.08 E-value=23 Score=27.92 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=21.6
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEee
Q 005297 639 RPRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 639 gakVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
+.+|||+.+...++.++.||+|.|..
T Consensus 27 ~V~vn~~~~~~~~~~v~~~d~i~i~~ 52 (70)
T cd00165 27 HVLVNGKVVTKPSYKVKPGDVIEVDG 52 (70)
T ss_pred CEEECCEEccCCccCcCCCCEEEEcC
Confidence 46899998844799999999998764
No 93
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=41.53 E-value=23 Score=31.78 Aligned_cols=57 Identities=11% Similarity=0.064 Sum_probs=39.5
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCc------------cccccccCCeec-CCCCCcCCCCCEEEEe
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLK------------EELRPRLNHKAV-GDPRCKLKMGDVVELT 663 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~------------~~igakVNg~~v-~~l~~~Lk~GDvVEIi 663 (703)
+.-.+++|+|.-+.|-.||+|..+ ||.-- ....+|-.|++- ..-+|.+++||++.+.
T Consensus 13 RAWti~~g~tAp~AAG~IHsDfek----gFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK~Yiv~DGDi~~f~ 82 (83)
T cd04867 13 RAWTIRKGTKAPQAAGVIHTDFEK----GFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGKDYVVQDGDIIFFK 82 (83)
T ss_pred EEEEccCCCChHHhcCCccccccc----CcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCCceEeeCCeEEEEE
Confidence 577899999999999999999865 42100 111345555531 1357999999999863
No 94
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=40.99 E-value=82 Score=39.09 Aligned_cols=79 Identities=20% Similarity=0.130 Sum_probs=49.9
Q ss_pred EEEeCCccceEecCCCCCHhhhhHhhccCCCC------CCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCCC
Q 005297 595 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSR------WSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPD 668 (703)
Q Consensus 595 ~~~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~------~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~p~ 668 (703)
|+.+| .-+++|+|.|+++.|.+.|-.+.. +++.|. . +.--+.|||+.++.=.++++.|.+|+--+
T Consensus 4 i~IdG---~~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~-C-r~C~VeV~G~~~~AC~t~v~dGM~V~T~s---- 74 (819)
T PRK08493 4 ITING---KECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLA-C-RLCMVEADGKRVYSCNTKAKEGMNILTNT---- 74 (819)
T ss_pred EEECC---EEEEeCCCCHHHHHHHHcCCccccccccCCCCCCcc-c-cceEEEECCEEeccccCCCCCCCEEEecC----
Confidence 45666 578999999999999987755532 111110 0 01125789998765567788888766432
Q ss_pred ccHHHHHHHHHHHH
Q 005297 669 KSLTEYREEIQRMY 682 (703)
Q Consensus 669 ~~l~~~r~~i~rm~ 682 (703)
+.....|..+.+++
T Consensus 75 ~~v~~~Rk~vle~l 88 (819)
T PRK08493 75 PNLMDERNAIMQTY 88 (819)
T ss_pred HHHHHHHHHHHHHH
Confidence 23456666666666
No 95
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=40.39 E-value=1e+02 Score=32.19 Aligned_cols=79 Identities=16% Similarity=0.184 Sum_probs=46.0
Q ss_pred EEEeCCccceEecCCCCCHhhhhHhhccCCCCC-C-----CCCCCCccccccccCCe--ecCCCCCcCCCCCEEEEeeCC
Q 005297 595 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSRW-S-----PYGFPLKEELRPRLNHK--AVGDPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 595 ~~~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~~-~-----~~g~~~~~~igakVNg~--~v~~l~~~Lk~GDvVEIit~~ 666 (703)
|+++| ..++.|+|.|++|.|.+.|..+... . ..|. -..| -++|||+ +++.=.++++.|-.|+--+
T Consensus 6 i~idg---~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~-C~~C-~V~v~g~~~~~~aC~t~v~~Gm~v~t~~-- 78 (234)
T PRK07569 6 LTIDD---QLVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGA-CRLC-LVEIEGSNKLLPACVTPVAEGMVVQTNT-- 78 (234)
T ss_pred EEECC---EEEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCc-cCCc-EEEECCCCccccCcCCCCCCCCEEEECC--
Confidence 34455 4689999999999999876555431 1 0110 0011 2678885 4433567888888776542
Q ss_pred CCccHHHHHHHHHHHH
Q 005297 667 PDKSLTEYREEIQRMY 682 (703)
Q Consensus 667 p~~~l~~~r~~i~rm~ 682 (703)
+.+..+|+.+-.++
T Consensus 79 --~~~~~~rk~~l~~l 92 (234)
T PRK07569 79 --PRLQEYRRMIVELL 92 (234)
T ss_pred --HHHHHHHHHHHHHH
Confidence 24455555444444
No 96
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=37.33 E-value=15 Score=30.17 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=17.8
Q ss_pred ccccCCeecCCC--CCcCCCCCEEEE
Q 005297 639 RPRLNHKAVGDP--RCKLKMGDVVEL 662 (703)
Q Consensus 639 gakVNg~~v~~l--~~~Lk~GDvVEI 662 (703)
|..|||+.+. . .++|++||+|+|
T Consensus 43 gt~vng~~l~-~~~~~~L~~gd~i~~ 67 (68)
T PF00498_consen 43 GTFVNGQRLG-PGEPVPLKDGDIIRF 67 (68)
T ss_dssp -EEETTEEES-STSEEEE-TTEEEEE
T ss_pred cEEECCEEcC-CCCEEECCCCCEEEc
Confidence 5689999885 4 599999999986
No 97
>COG1710 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.93 E-value=39 Score=32.35 Aligned_cols=83 Identities=20% Similarity=0.217 Sum_probs=54.8
Q ss_pred HhhhhhccCcchhhHHHHHHHhh--------hhhhhHHHHHHHHHHHHHhcCCceeccc----ccccChHH----HHHHH
Q 005297 366 ENLCFKHLNPDQHTELSSKLVEC--------FDEAMVTSAIEKLEQALKDKNISFLVLC----GRHKSLYS----IHCKM 429 (703)
Q Consensus 366 EDLafryL~P~~y~~i~~~l~~~--------~~e~~i~~v~~~L~~~L~~~gI~~~~V~----gR~K~~yS----I~~Km 429 (703)
||.|-=|++-..-.++.-+|.+. +-..+...+...+-.+|++.||...-|. ||++...- +.++|
T Consensus 26 E~~~eiyinlr~tr~v~vallens~~vK~Ig~P~s~y~k~skkvlkaleq~gI~vIPvk~KgrGrprkyd~~t~~~i~em 105 (139)
T COG1710 26 EDVTEIYINLRPTREVIVALLENSPNVKVIGCPPSLYPKVSKKVLKALEQMGIKVIPVKLKGRGRPRKYDRNTLLRIREM 105 (139)
T ss_pred cccceEEEeecccHHHHHHHHhcCCCcceecCCchhhhHHHHHHHHHHHhCCceEeeeeecCCCCCcccchhHHHHHHHH
Confidence 44444455544444555455441 1123445666666668888898765455 78888776 88999
Q ss_pred hhcCCCCCcccccEEEEEE
Q 005297 430 LKKKLTMDEIHDIYGLRLI 448 (703)
Q Consensus 430 ~rk~~~~~~I~Dl~giRII 448 (703)
.++|++..+|.-..|+=|=
T Consensus 106 lr~gk~preIsk~lGIpir 124 (139)
T COG1710 106 LRNGKTPREISKDLGIPIR 124 (139)
T ss_pred HHcCCCHHHHHHhhCCchh
Confidence 9999999999888887553
No 98
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=36.79 E-value=23 Score=31.06 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=20.2
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 005297 639 RPRLNHKAVGDPRCKLKMGDVVELT 663 (703)
Q Consensus 639 gakVNg~~v~~l~~~Lk~GDvVEIi 663 (703)
.++|||+.-.--..+|..||+|||=
T Consensus 38 ~V~vNGe~EtRRgkKlr~gd~V~i~ 62 (73)
T COG2501 38 EVKVNGEVETRRGKKLRDGDVVEIP 62 (73)
T ss_pred eEEECCeeeeccCCEeecCCEEEEC
Confidence 4799999754456899999999984
No 99
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=36.43 E-value=49 Score=40.49 Aligned_cols=82 Identities=20% Similarity=0.251 Sum_probs=52.8
Q ss_pred EEEEEeCCccceEecCCCCCHhhhhHhhccCCCCCCCCC---CCCccccc--cccCCeecCCCCCcCCCCCEEEEeeCCC
Q 005297 593 FVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYG---FPLKEELR--PRLNHKAVGDPRCKLKMGDVVELTPAIP 667 (703)
Q Consensus 593 fV~~~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~~~~~g---~~~~~~ig--akVNg~~v~~l~~~Lk~GDvVEIit~~p 667 (703)
..++++| .-++.|+|.|++++|-+-|.++..+ +|. .|+..|-- +-+||++++.=.+++..|.+|.-.+
T Consensus 6 i~vtidg---~~~~v~~G~tiL~a~~~~gI~iP~i-Cy~~~l~pi~sCd~ClVEidG~l~rsCsT~v~dGm~v~t~s--- 78 (978)
T COG3383 6 ITVTIDG---RSIEVEEGTTILRAANRNGIEIPHI-CYHESLGPIGSCDTCLVEIDGKLVRSCSTPVEDGMVVRTNS--- 78 (978)
T ss_pred EEEEECC---eEEecCCChHHHHHHHhcCCcccce-eccCCCCcccccceEEEEecCceeccccccccCCcEEeccc---
Confidence 4567777 4789999999999998865554432 111 01112211 4589999987889999999875432
Q ss_pred CccHHH-HHHHHHHHH
Q 005297 668 DKSLTE-YREEIQRMY 682 (703)
Q Consensus 668 ~~~l~~-~r~~i~rm~ 682 (703)
+-..+ .+++++|+.
T Consensus 79 -~rvk~~r~~~md~~l 93 (978)
T COG3383 79 -ERVKEARREAMDRIL 93 (978)
T ss_pred -HHHHHHHHHHHHHHH
Confidence 22333 455666665
No 100
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=35.63 E-value=32 Score=32.33 Aligned_cols=44 Identities=27% Similarity=0.526 Sum_probs=38.0
Q ss_pred CCCcchhhhhhhhhccccccCCCCcccccCCcccccCCchhhhhh
Q 005297 120 GSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDE 164 (703)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (703)
|.+|+++.|+..-|+.-||........+.++.. +.+++|+++..
T Consensus 75 ~p~G~ld~F~~~~L~~fvd~~~~~w~~~~~~~~-~~~~~~~~L~~ 118 (125)
T PF06744_consen 75 GPGGVLDQFFNQYLKPFVDTSGNPWRWRPGDGQ-GLGLSPAFLAQ 118 (125)
T ss_pred cCCCcHHHHHHHHHHHHHhCCCCcceeCCCCCc-CCCCCHHHHHH
Confidence 456899999999999999999988888877755 78999999983
No 101
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=34.65 E-value=41 Score=37.43 Aligned_cols=32 Identities=31% Similarity=0.295 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHH----HhCCCHHH-HHHHHhhcccc
Q 005297 223 YLLHCVETAMLLA----AIGANSTV-VAAGLLHDTLD 254 (703)
Q Consensus 223 YI~Hpl~VA~ILa----~lg~D~~t-IaAALLHDvVE 254 (703)
=++|.++|+.+-. .++.+++. -+|||+||+=-
T Consensus 63 R~~Hsl~V~~iar~~~~~l~~~~~l~~aaaL~HDiGh 99 (336)
T PRK01286 63 RLTHTLEVAQIARTIARALRLNEDLTEAIALGHDLGH 99 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCC
Confidence 3799999998654 45666554 47889999744
No 102
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=34.35 E-value=2e+02 Score=30.94 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhcCCc------eecccccccChHHHHHHHhhcCCCCCcccccEEEEEEEC---CHHHHHHHHHHHHh
Q 005297 395 TSAIEKLEQALKDKNIS------FLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVE---NEEDCYQALRVVHQ 464 (703)
Q Consensus 395 ~~v~~~L~~~L~~~gI~------~~~V~gR~K~~ySI~~Km~rk~~~~~~I~Dl~giRIIv~---~~~DCy~vlgiIh~ 464 (703)
.+..+.|.+.|++.|.. ...|.-+.+....+.++|.++|.-+.....-..+||.+. +.+|+.+++..|.+
T Consensus 294 ~~~~~~l~~~L~~~g~~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 294 MENTRYLVEELKKIGFEPVIEPVLNIVAFEVDDPEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred HHHHHHHHHHHHhCCCeEEcCCCceEEEEEeCCHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 34444555556554432 112445667777899999988764433322246999995 88999999988864
No 103
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=34.20 E-value=1.9e+02 Score=32.28 Aligned_cols=114 Identities=17% Similarity=0.098 Sum_probs=70.6
Q ss_pred hhhcCchhHHHHHHhhhhhccCcchhhHHHHHHHhh--h-------hhhhHHHHHHHHHHHHHhcCCc------eecccc
Q 005297 353 ANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC--F-------DEAMVTSAIEKLEQALKDKNIS------FLVLCG 417 (703)
Q Consensus 353 A~RLGi~~iK~ELEDLafryL~P~~y~~i~~~l~~~--~-------~e~~i~~v~~~L~~~L~~~gI~------~~~V~g 417 (703)
.=|+|..--..|+-+.--+...|.....+....... . .-+.+..-.+.|.+.|+..|+. ...|--
T Consensus 218 GlRlGy~ia~~~~i~~l~~vr~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~aNFvlv 297 (356)
T COG0079 218 GLRVGYAIANPELIAALNKVRPPFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKALGLFGVFPSQANFVLV 297 (356)
T ss_pred hhceeeccCCHHHHHHHHHhcCCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcEEEE
Confidence 347776444446666666666676655555443321 1 1233455567788888876632 112334
Q ss_pred cccC--hHHHHHHHhhcCCCCCccc--cc--EEEEEEECCHHHHHHHHHHHHhhc
Q 005297 418 RHKS--LYSIHCKMLKKKLTMDEIH--DI--YGLRLIVENEEDCYQALRVVHQLW 466 (703)
Q Consensus 418 R~K~--~ySI~~Km~rk~~~~~~I~--Dl--~giRIIv~~~~DCy~vlgiIh~~f 466 (703)
|.+. ...+++++.++|.-+.+.. .+ -.+||.+.+.+++.+++..|.+..
T Consensus 298 ~~~~~~~~~l~~~L~~~giivR~~~~~~~~~~~lRitvgt~een~~ll~AL~~~~ 352 (356)
T COG0079 298 RVPDAEAAALAEALLKKGILVRDCSSVGLLPGYLRITVGTPEENDRLLAALREVL 352 (356)
T ss_pred ECCCccHHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 4443 4579999999986433332 22 259999999999999999987643
No 104
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=32.77 E-value=42 Score=36.87 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=25.5
Q ss_pred cchhHHHHHHHHHHH----HhCCC-HHHHHHHHhhccccc
Q 005297 221 DPYLLHCVETAMLLA----AIGAN-STVVAAGLLHDTLDD 255 (703)
Q Consensus 221 ePYI~Hpl~VA~ILa----~lg~D-~~tIaAALLHDvVED 255 (703)
++...|.+.||.+.. .+|.| .+.-.||||||+=..
T Consensus 195 ~~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK~ 234 (342)
T PRK07152 195 EYRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITKE 234 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhcc
Confidence 456789999987554 34665 456789999998663
No 105
>PRK12720 secretion system apparatus protein SsaV; Provisional
Probab=31.52 E-value=3.7e+02 Score=32.88 Aligned_cols=195 Identities=17% Similarity=0.201 Sum_probs=111.1
Q ss_pred HHHHHHhC---CCHHHHHHHHhhcccccc---CCCHHHHH---HhhCHHHHHHHHHhhcccccchhHhhccccchHHHHH
Q 005297 231 AMLLAAIG---ANSTVVAAGLLHDTLDDA---FLSYDYIF---RTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEAD 301 (703)
Q Consensus 231 A~ILa~lg---~D~~tIaAALLHDvVEDT---~vT~eeI~---~~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~~~~qaE 301 (703)
...+...| .|+.+++|--|..++... -++.+|++ +...++--++|+.+.+.-.+.. -.+
T Consensus 451 ~~~a~~~Gytvvd~~~viaTHL~evir~~a~ellg~qev~~Lld~l~~~~p~Lv~el~~~l~l~~------------i~~ 518 (675)
T PRK12720 451 AEQAQGFGLDVFAGSQRISALLKCVLLRYMGEFIGVQETRYLMDAMEKRYGELVKELQRQLPVGK------------IAE 518 (675)
T ss_pred HHHHHHCCCEEEcHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhccCCHHH------------HHH
Confidence 33444455 488888888888887643 24554443 3345555667776633222221 123
Q ss_pred HHHHHH---hhcCCceeehhhhhhhHhhcccccCCCHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHhhhhhccCcch-
Q 005297 302 RLHTMF---LAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQ- 377 (703)
Q Consensus 302 ~lRkmL---LAmaD~RVvLIKLADRLhNMRtL~~~~~ekq~riA~ETl~IYaPLA~RLGi~~iK~ELEDLafryL~P~~- 377 (703)
-+|.+| +++.|.+.++=-|||.-..-++...+.+.-|+++++..-.-|+.-.+.|-...+.-++|+.-..-+....
T Consensus 519 VLq~LL~E~VsIRdl~tIlE~l~d~~~~~kd~~~LtE~VR~~L~r~I~~~~~~~~~~l~vi~l~p~~E~~l~~~i~~~~~ 598 (675)
T PRK12720 519 ILQRLVSERVSIRDLRTIFGTLVEWAPREKDVVMLTEYVRIALRRHILRRFNHEGKWLPVLRIGEGIENLIRESIRQTSA 598 (675)
T ss_pred HHHHHHhcCCccccHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeEEEEeCHHHHHHHHHHHhcccC
Confidence 455554 2344888888888988777677767777778888887777676655567778888888875543221110
Q ss_pred --hhHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCceecccccccChHHHHHHHhhcCC------CCCcccccEEEEEE
Q 005297 378 --HTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKL------TMDEIHDIYGLRLI 448 (703)
Q Consensus 378 --y~~i~~~l~~~~~e~~i~~v~~~L~~~L~~~gI~~~~V~gR~K~~ySI~~Km~rk~~------~~~~I~Dl~giRII 448 (703)
|-. -..+..+++++.+++.+++..-.+- ++.-. +-...+|+.++.. +++||.+-.-++++
T Consensus 599 g~~~~--------l~P~~~~~l~~~~~~~~~~~~~pVl-lts~~--iR~~lr~li~~~~p~l~VLS~~Ei~~~~~i~~~ 666 (675)
T PRK12720 599 GTYSA--------LSSRHSTQILQLIEQALKQSQKLVL-VTSVD--VRRFLRKIIERTLFDLPVLSWQELGDEAEIKVV 666 (675)
T ss_pred CCccc--------cCHHHHHHHHHHHHHHHHccCCcEE-EeCHH--HHHHHHHHHHHhCCCCEEeCHhHcCCCCeEEEE
Confidence 100 1223456666666666665422221 22211 2234455555432 46777776666654
No 106
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=31.50 E-value=80 Score=32.07 Aligned_cols=62 Identities=19% Similarity=0.329 Sum_probs=40.0
Q ss_pred CcchhHHHHHHHHH---HH-HhCCCHH-HHHHHHhhccccc-cC--------CCHHHHHHh-hCHHHHHHHHHhhcc
Q 005297 220 GDPYLLHCVETAML---LA-AIGANST-VVAAGLLHDTLDD-AF--------LSYDYIFRT-FGAGVADLVEGVSKL 281 (703)
Q Consensus 220 GePYI~Hpl~VA~I---La-~lg~D~~-tIaAALLHDvVED-T~--------vT~eeI~~~-FG~eVA~LV~gVTKl 281 (703)
.+..+-||++|+.. |+ ++|-|++ --.+|||||.=-+ |. .+.+-+++. ..++|++.|.+=...
T Consensus 45 ~e~L~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~tqgdpEeHgl~g~eiL~~edv~eeil~ai~~H~~~ 121 (212)
T COG2316 45 SESLQKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYELTQGDPEEHGLWGVEILREEDVSEEILDAIMGHAAY 121 (212)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHhhcCChhhcCccceehHhhcCCCHHHHHHHHHhhhh
Confidence 35678899987654 34 7898866 4578999997322 21 334444443 678888888765443
No 107
>PRK12792 flhA flagellar biosynthesis protein FlhA; Reviewed
Probab=31.15 E-value=1.8e+02 Score=35.50 Aligned_cols=120 Identities=12% Similarity=0.149 Sum_probs=79.5
Q ss_pred CCHHHHHHHHhhccccccC---CCHHHHHH---hhCHHHHHHHHHh-hcccccchhHhhccccchHHHHHHHHHHH---h
Q 005297 239 ANSTVVAAGLLHDTLDDAF---LSYDYIFR---TFGAGVADLVEGV-SKLSQLSKLARENNTASKTVEADRLHTMF---L 308 (703)
Q Consensus 239 ~D~~tIaAALLHDvVEDT~---vT~eeI~~---~FG~eVA~LV~gV-TKl~~l~~~~r~~~~~~~~~qaE~lRkmL---L 308 (703)
.|+.++++.-|..++.... ++.+|+++ .+.++-..+|+.+ -+.-.+.. -.+-+|++| +
T Consensus 480 vd~~svi~tHl~evi~~~a~ellgrqev~~Lld~l~~~~p~Lveelvp~~~~l~~------------l~~VLq~LL~E~V 547 (694)
T PRK12792 480 VDNASVLLTHLSEVIRNNLPQLLSYKDMRALLDRLDPEYKRLIDDICPSQISYSG------------LQAVLKLLLAERV 547 (694)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhChHHHHHhcccCCCHHH------------HHHHHHHHHHcCC
Confidence 4888888888888886532 45544433 2444444555553 22222221 123455554 2
Q ss_pred hcCCceeehhhhhhhHhhcccccCCCHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHhhhhh
Q 005297 309 AMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFK 371 (703)
Q Consensus 309 AmaD~RVvLIKLADRLhNMRtL~~~~~ekq~riA~ETl~IYaPLA~RLGi~~iK~ELEDLafr 371 (703)
++.|.+.++=-|||.-...++...+.+.-|+++++-.-.-|++ ..+|-.+.+..++|+.-..
T Consensus 548 sIRdl~tIlEtL~d~~~~~~d~~~LtE~VR~~L~r~I~~~~~~-~g~l~vi~L~p~~E~~l~~ 609 (694)
T PRK12792 548 SIRNLHLILEAVAEIAPHARRAEQIAEHVRMRIAQQICGDLSD-NGVLKVLRLGNRWDLAFHQ 609 (694)
T ss_pred ccccHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhcc-CCceEEEEeCHHHHHHHHH
Confidence 3448888888899988777777777788899999988888887 7888888888888886543
No 108
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=30.21 E-value=72 Score=29.94 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=32.0
Q ss_pred eEecCCCCCHhhhhHhhccCCCCCCCCCCCCcc----ccccccCCeecCCCCCcCCCCC-----EEEEeeC
Q 005297 604 VQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKE----ELRPRLNHKAVGDPRCKLKMGD-----VVELTPA 665 (703)
Q Consensus 604 v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~----~igakVNg~~v~~l~~~Lk~GD-----vVEIit~ 665 (703)
-++.+.|.|++|..-.|..+...--.|.....+ .-+.+|||+++-.=.+.++... .|+|-|.
T Consensus 22 ~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~ING~~~LAC~t~v~~~~~~~~~~i~IePL 92 (110)
T PF13085_consen 22 EVPVEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRINGRPRLACKTQVDDLIEKFGNVITIEPL 92 (110)
T ss_dssp EEEGGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEETTEEEEGGGSBGGGCTTSETBEEEEEES
T ss_pred EecCCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEECCceecceeeEchhccCCCcceEEEEEC
Confidence 456789999999987763321100001101111 2258999998521223344433 4666664
No 109
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=29.93 E-value=6e+02 Score=25.78 Aligned_cols=106 Identities=19% Similarity=0.278 Sum_probs=60.7
Q ss_pred hhhhcCchh-HHHHHHhhhhhccCc-chhhHHHHHHHhh-hhhhhHHHHHHHHHHHHHhcCCceecccccccChHHHHHH
Q 005297 352 LANRLGIST-WKVQLENLCFKHLNP-DQHTELSSKLVEC-FDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCK 428 (703)
Q Consensus 352 LA~RLGi~~-iK~ELEDLafryL~P-~~y~~i~~~l~~~-~~e~~i~~v~~~L~~~L~~~gI~~~~V~gR~K~~ySI~~K 428 (703)
+|.+-++.. +..-|..+.....-| +..++++...... .+...+......|.+.|+++||++..++|=.=. . +|.
T Consensus 11 ~a~~h~v~pll~~~l~~~~~~~~~p~~~~~~l~~~~~~~~~rn~~~~~~~~~i~~~l~~~gI~~~~lKG~~l~-~-~Y~- 87 (249)
T PF14907_consen 11 LARRHRVAPLLYRNLKRLGLSDRPPDEVLQRLKSAYRRNALRNLRLLAELQEILAALNANGIPVILLKGAALA-Q-LYP- 87 (249)
T ss_pred HHHHcCCHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEchHHHH-H-hCC-
Confidence 343444442 444555555544555 4555555544433 255556677778888999999997645552110 0 221
Q ss_pred HhhcCCCCCcccccEEEEEEECCHHHHHHHHHHHHhh-ccC
Q 005297 429 MLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQL-WAE 468 (703)
Q Consensus 429 m~rk~~~~~~I~Dl~giRIIv~~~~DCy~vlgiIh~~-f~p 468 (703)
........| +-|.|. .+|..++..++.++ |.+
T Consensus 88 ----~~~~R~~~D---iDlLV~-~~d~~~a~~~L~~~Gy~~ 120 (249)
T PF14907_consen 88 ----DPGLRPMGD---IDLLVP-PEDLERAVELLEELGYRI 120 (249)
T ss_pred ----CCCCCCCCC---eEEEEe-CCcHHHHHHHHHHcCCEe
Confidence 122344455 567777 77888888888775 554
No 110
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=29.28 E-value=1.1e+02 Score=37.30 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=50.6
Q ss_pred EEEeCCccceEecCCCCCHhhhhHhhccCCCC------CCCCCCCCccccccccCC--eecCCCCCcCCCCCEEEEeeCC
Q 005297 595 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSR------WSPYGFPLKEELRPRLNH--KAVGDPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 595 ~~~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~------~~~~g~~~~~~igakVNg--~~v~~l~~~Lk~GDvVEIit~~ 666 (703)
|.++| .-+++|+|.|++..|...|.++.. ++.+| .=++--+.|+| |+++.=.++..+|-+|.+-|
T Consensus 4 I~IDG---~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~G--aCRmClVEveg~~k~~~SC~tpv~dGM~I~T~s-- 76 (693)
T COG1034 4 ITIDG---KEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAG--ACRMCLVEVEGAPKLVASCATPVTDGMVISTNS-- 76 (693)
T ss_pred EEECC---EEEecCCCcHHHHHHHHcCCCCCcccccCCCCccc--ceeEEEEEecCCCccccccccccCCCeEEecCC--
Confidence 34455 589999999999999887666543 22222 00011146777 88877778999999954332
Q ss_pred CCccHHHHHHHHHHHH
Q 005297 667 PDKSLTEYREEIQRMY 682 (703)
Q Consensus 667 p~~~l~~~r~~i~rm~ 682 (703)
+-..++|+.|-+|+
T Consensus 77 --~~vk~~R~~vmE~L 90 (693)
T COG1034 77 --EEVKKAREGVMEFL 90 (693)
T ss_pred --HHHHHHHHHHHHHH
Confidence 23556666666665
No 111
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=28.15 E-value=3.4e+02 Score=29.12 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcCCc-e-----ecccccccChHHHHHHHhhcCCCCCcccccEEEEEEE---CCHHHHHHHHHHHHhhc
Q 005297 396 SAIEKLEQALKDKNIS-F-----LVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIV---ENEEDCYQALRVVHQLW 466 (703)
Q Consensus 396 ~v~~~L~~~L~~~gI~-~-----~~V~gR~K~~ySI~~Km~rk~~~~~~I~Dl~giRIIv---~~~~DCy~vlgiIh~~f 466 (703)
+..+.+.+.|++.|+. + ..+..+.+....+.++|.++|.-+.....-..+||.+ .+++|+.++++.|.+..
T Consensus 290 ~~~~~l~~~L~~~g~~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~ 369 (371)
T PRK13520 290 ENTRWLAEELKERGFEPVIEPVLNIVAFDDPNPDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDLKEVK 369 (371)
T ss_pred HHHHHHHHHHHhCCCEEecCCCceEEEEecCCHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHHHHh
Confidence 3334555556555554 1 1234455666788899988876443333334699977 47899999999987643
No 112
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=27.62 E-value=1.5e+02 Score=31.79 Aligned_cols=139 Identities=17% Similarity=0.124 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHhhhhhcc-CcchhhHHHHHHHhh---hhhhhHHHHHHHHHHHHHh
Q 005297 332 ALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHL-NPDQHTELSSKLVEC---FDEAMVTSAIEKLEQALKD 407 (703)
Q Consensus 332 ~~~~ekq~riA~ETl~IYaPLA~RLGi~~iK~ELEDLafryL-~P~~y~~i~~~l~~~---~~e~~i~~v~~~L~~~L~~ 407 (703)
.+.|+.-+|+++|.+.-+-.+..- +..-|..|...+=.|+ .+-.|+++.+++.+. .+.+.+ ...+++.|..
T Consensus 7 ~v~p~tV~rl~~~~~~~~~~~k~a--~k~~k~~LH~i~gay~~~~p~~~~ll~~l~~a~~~~D~e~~---~~~~r~lL~~ 81 (251)
T PF07091_consen 7 SVAPETVRRLAREALARRGDLKEA--VKATKRRLHQIFGAYLEGRPDYDALLRKLQEALDVGDPEAI---RAWCRRLLAG 81 (251)
T ss_dssp TB-HHHHHHHHHHHHCTTT-HHHH--HHHHHHHHHCCTCCCSSS---HHHHHHHHHHHHCTTHHHHH---HHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhcCCHHHH--HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccCcCCHHHH---HHHHHHHHhh
Confidence 457888888998887555444433 3457889999988888 444477777777663 233333 3344455554
Q ss_pred cCCceecccccccChHHHHHHHhhcCCCCCccccc---------------EEEEEEECCH-HHHHHHHHHHHhhccCC-C
Q 005297 408 KNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDI---------------YGLRLIVENE-EDCYQALRVVHQLWAEV-P 470 (703)
Q Consensus 408 ~gI~~~~V~gR~K~~ySI~~Km~rk~~~~~~I~Dl---------------~giRIIv~~~-~DCy~vlgiIh~~f~p~-p 470 (703)
+ + +...|...+.-+|.++...=.+.+.|-|| -+.+.+..++ ..+..+++.+-....+. .
T Consensus 82 H---a-ST~ERl~~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~ 157 (251)
T PF07091_consen 82 H---A-STRERLPNLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHD 157 (251)
T ss_dssp S---H-HHHCCGGGHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEE
T ss_pred c---c-chhhhhhhHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcc
Confidence 2 2 57899999999999987642222333332 3456666654 45666666554443322 1
Q ss_pred CcccCccCC
Q 005297 471 GKMKDYITR 479 (703)
Q Consensus 471 ~r~kDyIa~ 479 (703)
-++.|-...
T Consensus 158 ~~v~Dl~~~ 166 (251)
T PF07091_consen 158 ARVRDLLSD 166 (251)
T ss_dssp EEEE-TTTS
T ss_pred eeEeeeecc
Confidence 245566554
No 113
>TIGR01017 rpsD_bact ribosomal protein S4, bacterial/organelle type. This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.
Probab=26.34 E-value=50 Score=33.95 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=21.7
Q ss_pred cccCCeecCCCCCcCCCCCEEEEee
Q 005297 640 PRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 640 akVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
+.|||+.|..+.+.|+.||+|+|-.
T Consensus 117 V~VNgk~v~~ps~~V~~GD~I~V~~ 141 (200)
T TIGR01017 117 ILVNGKKVDIPSYQVRPGDIISIKE 141 (200)
T ss_pred EEECCEEeCCCCCCCCCCCEEEEee
Confidence 6799999855799999999999864
No 114
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=26.09 E-value=66 Score=35.41 Aligned_cols=31 Identities=29% Similarity=0.285 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHh-----CCCHH-HHHHHHhhccc
Q 005297 223 YLLHCVETAMLLAAI-----GANST-VVAAGLLHDTL 253 (703)
Q Consensus 223 YI~Hpl~VA~ILa~l-----g~D~~-tIaAALLHDvV 253 (703)
.+.|-++|+.++..+ .+|.+ .+++|||||+=
T Consensus 160 LleHtl~v~~~~~~l~~~y~~~n~dll~agalLHDiG 196 (314)
T PRK13480 160 LAYHVVSMLRLAKSICDLYPSLNKDLLYAGIILHDLG 196 (314)
T ss_pred HHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhh
Confidence 578999999887755 36767 56777999974
No 115
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=25.98 E-value=50 Score=33.98 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=22.0
Q ss_pred cccCCeecCCCCCcCCCCCEEEEeeC
Q 005297 640 PRLNHKAVGDPRCKLKMGDVVELTPA 665 (703)
Q Consensus 640 akVNg~~v~~l~~~Lk~GDvVEIit~ 665 (703)
..|||+.|..+.+.|+.||+|+|-..
T Consensus 120 V~VNgk~v~~ps~~v~~GD~I~v~~~ 145 (203)
T PRK05327 120 ILVNGKKVNIPSYRVKPGDVIEVREK 145 (203)
T ss_pred EEECCEEECCCCcCCCCCCEEEECCc
Confidence 67999998557999999999998753
No 116
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=25.18 E-value=75 Score=32.74 Aligned_cols=63 Identities=19% Similarity=0.195 Sum_probs=35.6
Q ss_pred eEecCCCCCHhhhhHhhccC-CCCCCCCCCCCc--c--ccccccCCeecCCCCCcCCC-CC---EEEEeeCCC
Q 005297 604 VQEFPTSSTVMDLLERAGRG-SSRWSPYGFPLK--E--ELRPRLNHKAVGDPRCKLKM-GD---VVELTPAIP 667 (703)
Q Consensus 604 v~~LP~GsTvlDfAy~i~~~-~~~~~~~g~~~~--~--~igakVNg~~v~~l~~~Lk~-GD---vVEIit~~p 667 (703)
.++.+.|.|++|++..|+.. .+..+ |..... . .-.++|||+++-.-.++++. |. +||-++..|
T Consensus 18 ~v~~~~~~tvl~~l~~i~~~~~~~l~-~~~~C~~g~Cg~C~v~vnG~~~laC~t~v~~~g~~~~~iepl~~~p 89 (220)
T TIGR00384 18 EVPADEGMTVLDALNYIKDEQDPSLA-FRRSCRNGICGSCAMNVNGKPVLACKTKVEDLGQPVMKIEPLPNLP 89 (220)
T ss_pred EEeCCCCCcHHHHHHHHHHhcCCCce-eecccCCCCCCCCeeEECCEEhhhhhChHHHcCCCcEEEeeCCCCc
Confidence 34677999999999887621 11110 000000 0 12478999987435677777 76 344444444
No 117
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=24.51 E-value=4.9e+02 Score=26.80 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=19.3
Q ss_pred HHHHHHHHHh----------hhhcCchhHHHH--------HHhhhhhccCcc
Q 005297 343 KETLEIFVPL----------ANRLGISTWKVQ--------LENLCFKHLNPD 376 (703)
Q Consensus 343 ~ETl~IYaPL----------A~RLGi~~iK~E--------LEDLafryL~P~ 376 (703)
+|.-+||+|. |..+|+..+... ++..+-.|++|+
T Consensus 89 ~elEdlY~PyK~kr~T~A~~Are~GLeplA~~il~~~~~~~~~~a~~~v~~~ 140 (193)
T PF09371_consen 89 QELEDLYLPYKPKRKTRATIAREAGLEPLADKILEQPESDPEVEAKKFVNEE 140 (193)
T ss_dssp HHHHHHHGGGS---S-HHHHHHHTTTHHHHHHHHH-TTS-HHHHHHTT-BGG
T ss_pred HHHHHHHhhhccCcCCHHHHHHHcCCHHHHHHHHcCCccchHHHHHHHhCcc
Confidence 4555666653 666676655443 345566677776
No 118
>CHL00113 rps4 ribosomal protein S4; Reviewed
Probab=24.04 E-value=55 Score=33.82 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=21.8
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEee
Q 005297 639 RPRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 639 gakVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
.+.|||+.|..+++.++.||+|+|-.
T Consensus 115 ~V~VNGk~v~~ps~~Vk~GD~I~V~~ 140 (201)
T CHL00113 115 HILVNGRIVDIPSYRCKPKDIITVKD 140 (201)
T ss_pred cEEECCEEecCccccCCCCCEEEEcc
Confidence 35799999865799999999999753
No 119
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=24.04 E-value=1.7e+02 Score=30.85 Aligned_cols=38 Identities=24% Similarity=0.514 Sum_probs=31.7
Q ss_pred HHHHHHHhC---CCHHHHHHHHhhccccccCCCHHHHHHhhCHHH
Q 005297 230 TAMLLAAIG---ANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGV 271 (703)
Q Consensus 230 VA~ILa~lg---~D~~tIaAALLHDvVEDT~vT~eeI~~~FG~eV 271 (703)
|+..+..+| .|.|.++ |++++-+.-....|.+.||.+|
T Consensus 17 Vs~~f~~~G~~vIDaD~va----R~vv~PG~p~~~~ive~FG~ei 57 (225)
T KOG3220|consen 17 VSQVFKALGIPVIDADVVA----REVVEPGTPAYRRIVEAFGTEI 57 (225)
T ss_pred HHHHHHHcCCcEecHHHHH----HHHhcCCChHHHHHHHHhCcee
Confidence 445555666 4888888 9999999999999999999998
No 120
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=23.58 E-value=1.4e+02 Score=25.93 Aligned_cols=55 Identities=11% Similarity=0.004 Sum_probs=41.8
Q ss_pred ccEEEEEEECCHHHHHHHHHHHHhhccCCCCcccCccCCCCCCCcceeEEE-EecCCeeeEEE
Q 005297 441 DIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTV-VTGEGLVPLEV 502 (703)
Q Consensus 441 Dl~giRIIv~~~~DCy~vlgiIh~~f~p~p~r~kDyIa~PK~NGYqSLHt~-V~~~~g~~vEI 502 (703)
.+.++-.++.+.+|+.++...+.+.--+ .+..|+...+.+..+. +.+|+|..+||
T Consensus 73 ~~~~i~~~~~~~~dl~~~~~~l~~~g~~-------~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 73 GGHHIAFLAFDVDDLDAAYERLKAQGVE-------IVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHHHTTGE-------EEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred cceeEEEEeccHHHHHHHHHHHhhcCcc-------EEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 4678999999999999999998876311 1223555666777766 88999999986
No 121
>TIGR01399 hrcV type III secretion protein, HrcV family. Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane.
Probab=23.51 E-value=2e+02 Score=35.01 Aligned_cols=128 Identities=16% Similarity=0.141 Sum_probs=82.1
Q ss_pred HHHHHHhC---CCHHHHHHHHhhccccccC---CCHHHHHH---hhCHHHHHHHHHhhcccccchhHhhccccchHHHHH
Q 005297 231 AMLLAAIG---ANSTVVAAGLLHDTLDDAF---LSYDYIFR---TFGAGVADLVEGVSKLSQLSKLARENNTASKTVEAD 301 (703)
Q Consensus 231 A~ILa~lg---~D~~tIaAALLHDvVEDT~---vT~eeI~~---~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~~~~qaE 301 (703)
...+...| .|+.++++.-|..++.... ++.+|+++ ..+++=-.+|+.+.+.-.+.. -.+
T Consensus 455 ~~~a~~~Gytvvd~~svi~thl~e~i~~~a~ellgrqe~~~Lld~l~~~~p~Lv~Elp~~~~l~~------------i~~ 522 (677)
T TIGR01399 455 AEKLQGAGLGYFSDSQVITHRLKATLLRNAQEFIGIQETRYLLDQMEREYPELVKEVQRVLPLQR------------IAE 522 (677)
T ss_pred HHHHHHcCCeEEcHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhccCCHHH------------HHH
Confidence 34444555 3888999888888886432 55554443 355566666776633222221 123
Q ss_pred HHHHHHh---hcCCceeehhhhhhhHhhcccccCCCHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHhhhh
Q 005297 302 RLHTMFL---AMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCF 370 (703)
Q Consensus 302 ~lRkmLL---AmaD~RVvLIKLADRLhNMRtL~~~~~ekq~riA~ETl~IYaPLA~RLGi~~iK~ELEDLaf 370 (703)
-+|++|- ++.|.+.++=-|||.-..-+....+.+.-|+++++..-.-|++-.+.|-...+.-++|+.-.
T Consensus 523 VLq~LL~E~VsIRdl~~IlEtLad~~~~~~d~~~LtE~VR~~L~r~I~~~~~~~~~~l~vi~l~p~~E~~l~ 594 (677)
T TIGR01399 523 VLQRLVSEQVSIRNLRLILETLIEWAQREKDVVMLTEYVRIALKRYICHRYANGGRQLSAVLIDPEIEELIR 594 (677)
T ss_pred HHHHHHhCCCccccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEEeCHHHHHHHH
Confidence 4566552 33488888888999887777777777778888888666666654555777777778887653
No 122
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=23.29 E-value=60 Score=37.24 Aligned_cols=57 Identities=18% Similarity=0.169 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhcCCcccc--Cc---chhHHHHHHHHHHHHhC--------------C-CHHHH-HHHHhhcccc
Q 005297 198 EDFVIKAFYEAERAHRGQMRAS--GD---PYLLHCVETAMLLAAIG--------------A-NSTVV-AAGLLHDTLD 254 (703)
Q Consensus 198 ~~~I~kA~~~A~~aH~GQ~Rks--Ge---PYI~Hpl~VA~ILa~lg--------------~-D~~tI-aAALLHDvVE 254 (703)
.++|...-.|=.-.++-|.-.. +. .=++|.++||.+-..++ . +.+.+ +|||+||+=-
T Consensus 29 ~dRii~s~~frRL~~ktQV~~~~~~d~~~tRltHslev~~i~r~~~~~~~~~~~~~~~~~~~~~~l~~a~~L~HDiGh 106 (432)
T PRK05318 29 RARILHSAAFRRLQAKTQVLGVGENDFYRTRLTHSLEVAQIGTGIVAQLKKEKQPELKPLLPSDSLIESLCLAHDIGH 106 (432)
T ss_pred HHHHhCCHHHhhhcccceeCCCCCCCCCcChhHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHhcCCC
Confidence 3455555555444555663221 11 22689999998765332 1 34534 8899999744
No 123
>TIGR03069 PS_II_S4 photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium.
Probab=23.03 E-value=59 Score=34.67 Aligned_cols=25 Identities=48% Similarity=0.706 Sum_probs=21.7
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 005297 639 RPRLNHKAVGDPRCKLKMGDVVELT 663 (703)
Q Consensus 639 gakVNg~~v~~l~~~Lk~GDvVEIi 663 (703)
.++|||+.|...++.++.||+|.|-
T Consensus 209 ~V~VNg~~v~~~s~~v~~gD~Isvr 233 (257)
T TIGR03069 209 RLRLNWKTVTQPSRELKVGDRLQLR 233 (257)
T ss_pred eEEECCEEcCCCCCcCCCCCEEEEc
Confidence 4789999986689999999999875
No 124
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=22.96 E-value=1.1e+03 Score=26.86 Aligned_cols=33 Identities=21% Similarity=0.087 Sum_probs=27.3
Q ss_pred chhHHHHHHHHHHHHhCCCHHHHHHHHhhcccc
Q 005297 222 PYLLHCVETAMLLAAIGANSTVVAAGLLHDTLD 254 (703)
Q Consensus 222 PYI~Hpl~VA~ILa~lg~D~~tIaAALLHDvVE 254 (703)
+...|.+.|...++.+..+....-||||||+=.
T Consensus 227 dv~~Htl~~l~~~~~l~~~l~lr~AaLlHDlGK 259 (409)
T PRK10885 227 DTGIHTLMVLDQAAKLSPSLDVRFAALCHDLGK 259 (409)
T ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHhccccC
Confidence 556899988888887777778889999999855
No 125
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=22.82 E-value=71 Score=35.97 Aligned_cols=58 Identities=10% Similarity=-0.042 Sum_probs=39.4
Q ss_pred cceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccc------------cccccCCeec-CCCCCcCCCCCEEEEe
Q 005297 602 MSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEE------------LRPRLNHKAV-GDPRCKLKMGDVVELT 663 (703)
Q Consensus 602 ~~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~------------igakVNg~~v-~~l~~~Lk~GDvVEIi 663 (703)
.+.-.+++|+|+-+.|-.||+|..+ ||.--+. ..+|=.|++- -.-+|.+++||+|.+-
T Consensus 295 vRaWti~~G~~Ap~AAG~IHsDfek----gFIrAEV~~yddl~~~gs~~~~k~~Gk~r~eGK~YivqDGDIi~f~ 365 (368)
T TIGR00092 295 VRAWTRKGGWAAPQAAGIIHTDFET----GFIAAEVISWDDFIYKKSSQGAKKGGLMRLEGKYYVVDDGDVLFFA 365 (368)
T ss_pred eEEeecCCCCchhHhcCCccccccc----CceEEEEecHHHHHHcCCHHHHHhcCchhhcCCeEEeeCCeEEEEe
Confidence 3677899999999999999999876 4211111 1233344321 1357999999999875
No 126
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=22.42 E-value=1.4e+02 Score=34.32 Aligned_cols=58 Identities=28% Similarity=0.321 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHhcCCcccc--Cc---chhHHHHHHHHHHH----HhCCCHH-HHHHHHhhcccc
Q 005297 197 REDFVIKAFYEAERAHRGQMRAS--GD---PYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 254 (703)
Q Consensus 197 d~~~I~kA~~~A~~aH~GQ~Rks--Ge---PYI~Hpl~VA~ILa----~lg~D~~-tIaAALLHDvVE 254 (703)
|.++|...-.|-.-.++-|.-.. +. .=++|.++||.+-. .++.+.+ +.+|||+||+=-
T Consensus 40 DrdRIi~S~afRRL~~KtQVf~~~~~Df~~tRltHslev~~~~r~~~~~~~~~~~~~~~~~l~hd~Gh 107 (428)
T PRK03007 40 DRARVLHSAALRRLADKTQVVGPREGDTPRTRLTHSLEVAQIGRGIAAGLGCDPDLVDLAGLAHDIGH 107 (428)
T ss_pred hHHHHhCCHHHHhhhccceeccCCCCCccccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCC
Confidence 44567766677666777775432 22 23689999998765 4466544 568889999754
No 127
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=22.09 E-value=1.5e+02 Score=26.41 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=28.6
Q ss_pred HHHhhhhcCchhHHHHHHhhhhhccCcchhhHHHHHHHhhhh-hhhHHHHHHHHHHHHHhcCCc
Q 005297 349 FVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFD-EAMVTSAIEKLEQALKDKNIS 411 (703)
Q Consensus 349 YaPLA~RLGi~~iK~ELEDLafryL~P~~y~~i~~~l~~~~~-e~~i~~v~~~L~~~L~~~gI~ 411 (703)
+-++|.+||+..-+-|--....+-+.-..|+-+..+.+..-+ ++.+ +.|-+.|.+.+..
T Consensus 14 wk~~~R~LGlse~~Id~ie~~~~~~~Eq~yqmL~~W~~~~g~~~At~----~~L~~aLr~~~l~ 73 (80)
T cd08313 14 WKEFVRRLGLSDNEIERVELDHRRCRDAQYQMLKVWKERGPRPYATL----QHLLSVLRDMELV 73 (80)
T ss_pred HHHHHHHcCCCHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCCcchH----HHHHHHHHHcCcH
Confidence 345678999997444433333322222334444444433322 3444 4445555555543
No 128
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=20.80 E-value=2.6e+02 Score=33.14 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=44.7
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCC---CCcccc--ccccCCe---ecCCCCCcCCCCCEEEEeeCCCCccHHHH
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGF---PLKEEL--RPRLNHK---AVGDPRCKLKMGDVVELTPAIPDKSLTEY 674 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~---~~~~~i--gakVNg~---~v~~l~~~Lk~GDvVEIit~~p~~~l~~~ 674 (703)
..++.|+|.|++|.|.+.|-++... +|-. +.-.|- -+.|+|+ +|+.=.++++.|-+|+-- ++...++
T Consensus 6 ~~~~~~~g~~il~a~~~~gi~ip~~-C~~~~l~~~g~Cr~C~v~v~g~~~~~~~aC~~~~~~gm~v~t~----~~~~~~~ 80 (603)
T TIGR01973 6 KELEVPKGTTVLQACLSAGIEIPRF-CYHEKLSIAGNCRMCLVEVEKFPDKPVASCATPVTDGMKISTN----SEKVKKA 80 (603)
T ss_pred EEEEeCCCCHHHHHHHHcCCCcccc-CCCCCCCCCCccccCEEEECCCCCCcccccCCCCCCCCEEEeC----CHHHHHH
Confidence 5889999999999999876555431 1100 000111 2567774 666566888888877642 3345555
Q ss_pred HHHHHHHH
Q 005297 675 REEIQRMY 682 (703)
Q Consensus 675 r~~i~rm~ 682 (703)
|+.+-+|+
T Consensus 81 r~~~~e~l 88 (603)
T TIGR01973 81 REGVMEFL 88 (603)
T ss_pred HHHHHHHH
Confidence 55554444
Done!