Query 005297
Match_columns 703
No_of_seqs 364 out of 2128
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 21:18:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005297.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005297hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vj7_A Bifunctional RELA/SPOT; 100.0 3E-105 1E-109 868.3 29.8 364 182-553 9-377 (393)
2 3l9d_A SMU.1046C, putative GTP 100.0 3.1E-44 1E-48 369.9 12.8 190 347-552 19-219 (255)
3 2be3_A GTP pyrophosphokinase; 100.0 1.7E-38 5.8E-43 322.7 13.1 153 412-568 42-210 (226)
4 3nqw_A CG11900; stringent resp 100.0 5.3E-35 1.8E-39 287.4 10.1 166 196-372 4-176 (179)
5 3nr1_A HD domain-containing pr 100.0 3E-33 1E-37 274.8 13.3 145 197-352 3-156 (178)
6 3hvz_A Uncharacterized protein 99.7 9.3E-18 3.2E-22 144.2 2.1 66 576-667 5-70 (78)
7 2eki_A DRG 1, developmentally- 99.2 5.6E-12 1.9E-16 111.3 5.3 73 577-666 10-88 (93)
8 2kmm_A Guanosine-3',5'-BIS(dip 98.8 2.6E-09 9E-14 88.8 3.5 62 593-667 4-65 (73)
9 1wwt_A Threonyl-tRNA synthetas 98.7 9.9E-09 3.4E-13 88.8 4.2 66 593-671 13-79 (88)
10 1tke_A Threonyl-tRNA synthetas 98.6 1.2E-08 4E-13 102.8 2.3 79 603-691 10-97 (224)
11 1wxq_A GTP-binding protein; st 98.5 2.1E-08 7.3E-13 109.2 2.1 54 603-666 341-396 (397)
12 1qf6_A THRRS, threonyl-tRNA sy 96.8 0.00025 8.4E-09 81.9 0.8 86 594-692 4-98 (642)
13 2l32_A Small archaeal modifier 96.7 0.0022 7.6E-08 54.2 5.8 53 603-668 13-65 (74)
14 1f0z_A THis protein; ubiquitin 96.7 0.0014 4.8E-08 53.7 4.2 56 596-666 4-63 (66)
15 1tyg_B YJBS; alpha beta barrel 96.6 0.0023 7.9E-08 55.8 5.4 58 595-666 23-84 (87)
16 2k5p_A THis protein, thiamine- 96.5 0.0021 7.2E-08 54.8 4.1 59 595-667 3-67 (78)
17 1rws_A Hypothetical protein PF 96.4 0.0011 3.7E-08 56.1 2.2 52 603-666 23-74 (77)
18 1ryj_A Unknown; beta/alpha pro 96.4 0.0042 1.4E-07 51.5 5.4 50 605-666 18-67 (70)
19 1nyr_A Threonyl-tRNA synthetas 96.4 0.00041 1.4E-08 79.9 -1.1 80 603-692 12-100 (645)
20 2kl0_A Putative thiamin biosyn 96.3 0.0032 1.1E-07 53.0 4.4 52 603-666 8-62 (73)
21 2hj1_A Hypothetical protein; s 96.1 0.0034 1.1E-07 55.9 3.8 56 604-664 29-84 (97)
22 2cu3_A Unknown function protei 96.1 0.0059 2E-07 49.6 4.9 51 603-666 7-61 (64)
23 4a9a_A Ribosome-interacting GT 95.4 0.0088 3E-07 64.9 4.2 51 607-664 320-375 (376)
24 2q5w_D Molybdopterin convertin 95.4 0.0062 2.1E-07 50.7 2.3 56 604-666 19-74 (77)
25 1jal_A YCHF protein; nucleotid 94.9 0.013 4.6E-07 63.1 3.6 54 603-663 291-360 (363)
26 2ohf_A Protein OLA1, GTP-bindi 94.5 0.015 5E-07 63.6 2.8 58 603-667 317-390 (396)
27 2dby_A GTP-binding protein; GD 94.4 0.015 5.1E-07 62.7 2.6 54 603-663 296-365 (368)
28 1vjk_A Molybdopterin convertin 94.3 0.033 1.1E-06 48.9 4.0 62 603-666 29-95 (98)
29 3po0_A Small archaeal modifier 94.2 0.023 7.9E-07 48.6 2.8 63 603-666 20-86 (89)
30 3rpf_C Molybdopterin convertin 93.4 0.094 3.2E-06 43.5 5.1 56 605-666 16-71 (74)
31 1fm0_D Molybdopterin convertin 92.1 0.13 4.5E-06 42.9 4.2 56 608-666 23-78 (81)
32 3b57_A LIN1889 protein; Q92AN1 91.8 0.52 1.8E-05 46.4 8.9 55 199-256 5-64 (209)
33 3dto_A BH2835 protein; all alp 91.4 0.84 2.9E-05 45.9 10.0 54 198-254 4-62 (223)
34 2g1e_A Hypothetical protein TA 91.3 0.18 6.2E-06 42.8 4.3 61 604-666 18-87 (90)
35 2paq_A 5'-deoxynucleotidase YF 91.1 1.6 5.3E-05 43.2 11.4 95 220-327 29-144 (201)
36 2pjq_A Uncharacterized protein 90.4 0.84 2.9E-05 45.8 9.0 56 196-254 7-67 (231)
37 2qgs_A Protein Se1688; alpha-h 89.8 1.5 5E-05 43.8 10.0 54 199-255 5-64 (225)
38 3djb_A Hydrolase, HD family; a 89.6 1.2 4.2E-05 44.6 9.4 55 198-255 4-63 (223)
39 1ni3_A YCHF GTPase, YCHF GTP-b 89.4 0.09 3.1E-06 57.2 1.0 54 603-663 319-388 (392)
40 2l52_A Methanosarcina acetivor 87.5 0.39 1.3E-05 42.1 3.6 61 604-666 22-96 (99)
41 3dwg_C 9.5 kDa culture filtrat 83.5 0.69 2.4E-05 39.7 3.2 60 605-666 21-90 (93)
42 1wgk_A Riken cDNA 2900073H19 p 77.6 2.4 8.1E-05 38.4 4.7 62 604-666 33-105 (114)
43 2qjl_A URM1, ubiquitin-related 76.8 1.8 6E-05 37.8 3.5 62 604-666 23-96 (99)
44 2ibn_A Inositol oxygenase; red 73.0 3.5 0.00012 42.2 5.0 55 200-254 37-92 (250)
45 1v8c_A MOAD related protein; r 71.4 2.5 8.6E-05 40.7 3.4 61 604-667 17-85 (168)
46 2pq7_A Predicted HD superfamil 67.3 8.2 0.00028 37.8 6.3 50 200-252 14-68 (220)
47 2k9x_A Tburm1, uncharacterized 63.1 8 0.00027 34.8 4.8 63 604-666 24-99 (110)
48 2ogi_A Hypothetical protein SA 59.1 7.2 0.00025 37.7 4.0 34 222-255 26-64 (196)
49 2k6p_A Uncharacterized protein 55.6 6.6 0.00023 33.4 2.7 24 639-663 27-50 (92)
50 3ccg_A HD superfamily hydrolas 55.4 9.1 0.00031 36.7 4.0 33 223-255 20-57 (190)
51 2o08_A BH1327 protein; putativ 55.2 9.2 0.00032 36.6 4.0 34 222-255 18-56 (188)
52 3kh1_A Predicted metal-depende 52.3 20 0.00069 35.4 6.0 56 199-254 8-79 (200)
53 2cqz_A 177AA long hypothetical 52.0 12 0.00041 35.9 4.2 36 220-255 30-75 (177)
54 3u7z_A Putative metal binding 51.1 8.7 0.0003 34.3 2.8 54 605-663 25-96 (101)
55 2dqb_A Deoxyguanosinetriphosph 50.9 11 0.00037 40.9 4.1 33 222-254 75-112 (376)
56 4dmb_A HD domain-containing pr 45.2 42 0.0014 33.3 7.0 93 220-328 43-149 (204)
57 1p9k_A ORF, hypothetical prote 44.9 8 0.00027 32.1 1.5 25 639-663 47-71 (79)
58 2gz4_A Hypothetical protein AT 40.9 22 0.00074 35.5 4.2 36 220-255 53-90 (207)
59 1dm9_A Hypothetical 15.5 KD pr 39.8 15 0.00051 33.9 2.6 24 639-663 35-58 (133)
60 3fm8_A Kinesin-like protein KI 39.7 11 0.00039 34.4 1.8 24 639-663 91-114 (124)
61 2hek_A Hypothetical protein; p 38.9 19 0.00065 38.7 3.7 35 221-255 49-89 (371)
62 4ejq_A Kinesin-like protein KI 35.2 16 0.00054 34.4 2.1 24 639-663 111-134 (154)
63 4a5p_A Protein MXIA, protein V 34.4 51 0.0018 35.7 6.1 190 239-448 173-380 (383)
64 2huo_A Inositol oxygenase; pro 34.2 45 0.0015 34.7 5.3 53 200-252 76-129 (289)
65 1c05_A Ribosomal protein S4 de 31.9 24 0.00082 33.4 2.8 26 639-664 77-102 (159)
66 3gqs_A Adenylate cyclase-like 31.1 17 0.00058 31.6 1.4 24 639-663 70-93 (106)
67 3c8y_A Iron hydrogenase 1; dit 30.9 72 0.0024 36.0 6.9 79 595-682 4-90 (574)
68 1wln_A Afadin; beta sandwich, 30.6 19 0.00064 32.2 1.6 25 639-664 81-105 (120)
69 3po8_A RV0020C protein, putati 29.1 22 0.00074 30.5 1.8 23 639-663 66-88 (100)
70 1xx7_A Oxetanocin-like protein 28.7 46 0.0016 32.2 4.2 35 220-254 35-79 (184)
71 2kzr_A Ubiquitin thioesterase 28.4 73 0.0025 26.4 4.9 69 592-665 3-77 (86)
72 2vqe_D 30S ribosomal protein S 27.8 29 0.001 34.4 2.7 25 640-664 126-150 (209)
73 1ynb_A Hypothetical protein AF 27.8 97 0.0033 29.8 6.3 34 221-254 37-78 (173)
74 1lgp_A Cell cycle checkpoint p 27.1 35 0.0012 30.0 2.8 27 639-665 69-96 (116)
75 2q14_A Phosphohydrolase; BT420 25.9 27 0.00091 38.2 2.1 32 222-253 55-99 (410)
76 4h87_A Kanadaptin; FHA domain 25.8 31 0.0011 31.5 2.2 23 639-662 95-119 (130)
77 3r8n_D 30S ribosomal protein S 25.2 18 0.00062 36.0 0.6 25 640-664 122-146 (205)
78 4f43_A Protelomerase; recombin 25.1 83 0.0028 33.3 5.5 29 128-164 74-102 (320)
79 3tm8_A BD1817, uncharacterized 25.1 58 0.002 34.0 4.4 35 219-253 162-206 (328)
80 4i1u_A Dephospho-COA kinase; s 25.0 38 0.0013 33.4 2.9 38 230-271 25-65 (210)
81 3bbn_D Ribosomal protein S4; s 24.9 31 0.001 34.2 2.2 25 640-664 116-140 (201)
82 3ssb_I IMPI alpha, inducible m 24.7 12 0.00041 26.6 -0.6 15 126-140 11-25 (32)
83 3hx1_A SLR1951 protein; P74513 23.7 24 0.00081 32.2 1.0 23 639-663 83-105 (131)
84 3irh_A HD domain protein; phos 23.3 32 0.0011 38.4 2.1 31 223-253 87-137 (480)
85 3gw7_A Uncharacterized protein 23.2 43 0.0015 33.7 2.9 32 224-255 27-63 (239)
86 3kt9_A Aprataxin; FHA domain, 22.4 29 0.001 30.8 1.3 25 640-664 66-91 (102)
87 3a5i_A Flagellar biosynthesis 22.0 68 0.0023 34.8 4.3 184 239-448 179-383 (389)
88 3u1n_A SAM domain and HD domai 21.4 36 0.0012 38.4 2.1 31 223-253 66-111 (528)
89 1ksk_A Ribosomal small subunit 21.3 36 0.0012 33.7 1.8 25 639-663 29-53 (234)
90 3kbg_A 30S ribosomal protein S 20.4 43 0.0015 33.5 2.2 23 640-662 36-58 (213)
91 4egx_A Kinesin-like protein KI 20.4 42 0.0014 32.6 2.1 23 640-663 142-164 (184)
92 1uht_A Expressed protein; FHA 20.4 32 0.0011 30.4 1.2 24 639-663 77-102 (118)
No 1
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=100.00 E-value=2.8e-105 Score=868.34 Aligned_cols=364 Identities=39% Similarity=0.603 Sum_probs=312.1
Q ss_pred HHHHHHHHHhhCCcchHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhccccccCCCHH
Q 005297 182 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYD 261 (703)
Q Consensus 182 ~~~ll~~~~~~~~~~d~~~I~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D~~tIaAALLHDvVEDT~vT~e 261 (703)
+++|+..+..+++..+.+++.+|+.||.++|.||+|++|+|||.||++||.||+++++|.++++||||||++|||.+|.+
T Consensus 9 ~~~l~~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~~i~AALLHDvvEDt~~t~e 88 (393)
T 1vj7_A 9 GEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDITLD 88 (393)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHSSCCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHhhhHHhcCCCCHH
Confidence 46788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCHHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhcC-CceeehhhhhhhHhhcccccCCCHHHHHH
Q 005297 262 YIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQR 340 (703)
Q Consensus 262 eI~~~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAma-D~RVvLIKLADRLhNMRtL~~~~~ekq~r 340 (703)
+|++.||++|+.||+||||+++++... ....|+|++||||++|+ |+||++|||||||||||++..+++++|++
T Consensus 89 ~I~~~FG~~Va~lV~gvTk~~~~~~~~------~~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~~~ek~~~ 162 (393)
T 1vj7_A 89 NIEFDFGKDVRDIVDGVTKLGKVEYKS------HEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQER 162 (393)
T ss_dssp HHHHHHCHHHHHHHHHHHHHC--------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHH
T ss_pred HHHHHhCHHHHHHHHHHHhcccCCccc------HHHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhhCChHHHHH
Confidence 999999999999999999999875321 23458999999999997 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCchhHHHHHHhhhhhccCcchhhHHHHHHHhhh--hhhhHHHHHHHHHHHHHhcCCceeccccc
Q 005297 341 FAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGR 418 (703)
Q Consensus 341 iA~ETl~IYaPLA~RLGi~~iK~ELEDLafryL~P~~y~~i~~~l~~~~--~e~~i~~v~~~L~~~L~~~gI~~~~V~gR 418 (703)
+|+||++|||||||||||++||||||||||+||+|+.|++|.++|.+.. ++++++.+++.|++.|++.||.+. |+||
T Consensus 163 iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~~r~~r~~~i~~i~~~l~~~L~~~gi~~~-v~~R 241 (393)
T 1vj7_A 163 ISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGD-VYGR 241 (393)
T ss_dssp HHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCCCE-EEEC
T ss_pred HHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEEE
Confidence 9999999999999999999999999999999999999999999998763 789999999999999999999985 9999
Q ss_pred ccChHHHHHHHhhcCCCCCcccccEEEEEEECCHHHHHHHHHHHHhhccCCCCcccCccCCCCCCCcceeEEEEecCCee
Q 005297 419 HKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLV 498 (703)
Q Consensus 419 ~K~~ySI~~Km~rk~~~~~~I~Dl~giRIIv~~~~DCy~vlgiIh~~f~p~p~r~kDyIa~PK~NGYqSLHt~V~~~~g~ 498 (703)
+|++||||+||+||+.+|++|+|++|+||||++.+|||+++|+||++|+|+|++|||||++||+||||||||+|.+|+|
T Consensus 242 ~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~~~dcy~vl~~i~~~~~~~~~~~kDyIa~PK~nGYqSlH~~v~~p~~- 320 (393)
T 1vj7_A 242 PKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKG- 320 (393)
T ss_dssp CCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESSHHHHHHHHHHHHHHSCBCTTCCEETTTSCCTTCCCCEEEEEECSSS-
T ss_pred eCChHHHHHHHHHhCCChhhhcccceEEEEECCHHHHHHHHHHHHhcCCCCCCcccccccCCCcCCcceeEEEEEeCCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeehhhHHHHHhhhhhhcccccCCCCc--chhHHHHHHHHHHHHHHHHHhcc
Q 005297 499 PLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQH--SSFVLQMVEWARWVLTWQCEAMS 553 (703)
Q Consensus 499 ~vEIQIRT~~Mh~wAE~G~aahw~YK~~~~~~--~~~~~~~~~Wl~~Lle~q~e~~~ 553 (703)
++||||||..||.|||+||++||+||++.... .....++++||++|++||++..+
T Consensus 321 ~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~~~~~~~~~~~wl~~ll~~~~~~~~ 377 (393)
T 1vj7_A 321 PIEIQIRTKEMHQVAEYGVAAHWAYKKGVRGKVNQAEQKVGMNWIKELVELQDASNG 377 (393)
T ss_dssp EEEEEEEEHHHHHHHHHTTCC---------------------CHHHHHHHC------
T ss_pred eEEEEEecHHHHHHHHhhHHHHhccccCCCcccchhhhHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999874321 12334678999999999988766
No 2
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}
Probab=100.00 E-value=3.1e-44 Score=369.88 Aligned_cols=190 Identities=22% Similarity=0.305 Sum_probs=141.2
Q ss_pred HHHHHhhhhcCchhHHHHHHhhhhhccCcchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCceecccccccChHHHH
Q 005297 347 EIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIH 426 (703)
Q Consensus 347 ~IYaPLA~RLGi~~iK~ELEDLafryL~P~~y~~i~~~l~~~~~e~~i~~v~~~L~~~L~~~gI~~~~V~gR~K~~ySI~ 426 (703)
.||||||+||||.++|.|++++.+.|.. .+.+++.+| +.+.+.++..+....|. .|++|+|+++||+
T Consensus 19 ~i~apla~~lg~~~~~~~~~~~~~~Y~~--a~~el~~kl---------~~l~~e~~~~~~~~~i~--~V~~RvKs~~SI~ 85 (255)
T 3l9d_A 19 SHMASMTGGQQMGRGSMNWEEFLDPYIQ--AVGELKIKF---------RGIRKQFRKQKRHSPIE--FVTGRVKPIESIK 85 (255)
T ss_dssp ----------------CCHHHHTHHHHH--HHHHHHHHH---------HHHHHHHHHTTSCCSCC--EEEEEECCHHHHH
T ss_pred cchHhhhhHhhHHHHHHHHHHHHHHHHH--HHHHHHHHH---------HHHHHHHHHhhccCCcc--eEEeEEcCHHHHH
Confidence 6999999999999999999999987653 455554443 22333333333334444 6999999999999
Q ss_pred HHHhhcCCCCC----cccccEEEEEEECCHHHHHHHHHHHHhhccCCCCcccCccCCCCCCCcceeEEEEe-------cC
Q 005297 427 CKMLKKKLTMD----EIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVT-------GE 495 (703)
Q Consensus 427 ~Km~rk~~~~~----~I~Dl~giRIIv~~~~DCy~vlgiIh~~f~p~p~r~kDyIa~PK~NGYqSLHt~V~-------~~ 495 (703)
+||+|++.+++ +|+|++||||||.+.+|||+++++||+.|+|.|.++||||++||+|||||||++|. ++
T Consensus 86 ~Km~Rk~~~~~~~~~~I~Di~GiRII~~~~~D~y~v~~~I~~~~~~~~~~~KDYIa~PK~nGYrSlH~iv~~p~~~~~g~ 165 (255)
T 3l9d_A 86 EKMVLRGIKKENLTQDMQDIAGLRIMVQFVDDVNDVLELLRQRKDMKVIQERDYINNLKPSGYRSYHVIVEYPVDTISGQ 165 (255)
T ss_dssp HHHHHHTCCGGGHHHHCSCSEEEEEEESSTTHHHHHHHHHHTCSSSEEEEEEEESCC-CCCSCCEEEEEEEEEEEETTEE
T ss_pred HHHHhcCCCccchhhhccccceEEEEEeCHHHHHHHHHHHHhcCCCceeeeeccccCCCCCCceeEEEEEEcccccccCC
Confidence 99999999887 79999999999999999999999999999999999999999999999999999997 56
Q ss_pred CeeeEEEEEeehhhHHHHHhhhhhhcccccCCCCcchhHHHHHHHHHHHHHHHHHhc
Q 005297 496 GLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAM 552 (703)
Q Consensus 496 ~g~~vEIQIRT~~Mh~wAE~G~aahw~YK~~~~~~~~~~~~~~~Wl~~Lle~q~e~~ 552 (703)
.+.++||||||.+||.|||+||+.+|+|+...+ ..+.+++.-++.+++..++.+
T Consensus 166 ~~~~vEIQIRT~~Mh~WAeieH~~~YK~~~~~p---~~i~r~L~~~A~~l~~~D~~m 219 (255)
T 3l9d_A 166 RIIMAEIQIRTLAMNFWATIEHSLNYKYHGEFP---EDIKRRLELTSKIAFQLDEEM 219 (255)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEECCHHHHHHHHHHHHHhcCCCCCCc---HHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999996543 345666666666666555444
No 3
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8
Probab=100.00 E-value=1.7e-38 Score=322.71 Aligned_cols=153 Identities=24% Similarity=0.309 Sum_probs=132.0
Q ss_pred eecccccccChHHHHHHHhhcCCCCC----cccccEEEEEEECCHHHHHHHHHHHHhhccCCCCcccCccCCCCCCCcce
Q 005297 412 FLVLCGRHKSLYSIHCKMLKKKLTMD----EIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQS 487 (703)
Q Consensus 412 ~~~V~gR~K~~ySI~~Km~rk~~~~~----~I~Dl~giRIIv~~~~DCy~vlgiIh~~f~p~p~r~kDyIa~PK~NGYqS 487 (703)
++.|++|+|+++||++||+||+.+++ +|+|++|+||||++++|||+++++||+.|++.|.++||||++||+|||||
T Consensus 42 i~~v~~RvK~~~Si~~K~~rk~~~~~~~~~~i~Di~GiRIi~~~~~d~y~v~~~i~~~~~~~~~~~kDyI~~PK~nGYrS 121 (226)
T 2be3_A 42 IEFVTGRVKPIESIKEKMARRGITYATLEHDLQDIAGLRVMVQFVDDVKEVVDILHKRQDMRIIQERDYITHRKASGYRS 121 (226)
T ss_dssp EEEEEEEECCHHHHHHHHHHHTCCTTTHHHHCTTSEEEEEEESCGGGHHHHHHHHHTCSSEEEEEEEETTTTCCTTSCCC
T ss_pred cceEEeeCCCHHHHHHHHHhhCCCcccchhhccccceEEEEEcCHHHHHHHHHHHHhccCCceeeecchhhcCCCCCceE
Confidence 44699999999999999999999988 99999999999999999999999999999999999999999999999999
Q ss_pred eEEEEe-------cCCeeeEEEEEeehhhHHHHHhhhhhhcccccCCCCcc-h----hHHHHHHHHHHHHHHHHHhcccC
Q 005297 488 LHTVVT-------GEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHS-S----FVLQMVEWARWVLTWQCEAMSKD 555 (703)
Q Consensus 488 LHt~V~-------~~~g~~vEIQIRT~~Mh~wAE~G~aahw~YK~~~~~~~-~----~~~~~~~Wl~~Lle~q~e~~~~~ 555 (703)
||++|. ++.|.++||||||..||.|||+||++||+||++.+..- . .......|.+++.+|++++.+
T Consensus 122 lH~~v~~p~~~~~g~~~~~vEIQIRT~~m~~wAe~eh~~~YK~~~~~~~~~~~~l~~~a~~~~~~d~~m~~i~~~i~~-- 199 (226)
T 2be3_A 122 YHVVVEYTVDTINGAKTILAEIQIRTLAMNFWATIEHSLNYKYQGDFPDEIKKRLEITARIAHQLDEEMGEIRDDIQE-- 199 (226)
T ss_dssp EEEEEEEEECCTTCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH--
T ss_pred EEEEEEcccccccCCCCcEEEEEEeeHHHHHHHHHhHHHHcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 999997 66789999999999999999999999999998654210 0 112246799999999998876
Q ss_pred CCCCccCcCCCCC
Q 005297 556 RSCVGNGDSIKPP 568 (703)
Q Consensus 556 ~~~~~~~~~lk~~ 568 (703)
+.+|++.++.+
T Consensus 200 --~~~~~~~~~~~ 210 (226)
T 2be3_A 200 --AQALFDPLSRK 210 (226)
T ss_dssp --HHHHCCC----
T ss_pred --hHHHHHHhhHH
Confidence 56788888875
No 4
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=5.3e-35 Score=287.43 Aligned_cols=166 Identities=25% Similarity=0.359 Sum_probs=141.5
Q ss_pred chHHHHHHHHHHHHHHhcCCccc--cCcchhHHHHHHHHHHH-HhCC-CHHHHHHHHhhccccccCCCHHHHHHhhCHHH
Q 005297 196 FREDFVIKAFYEAERAHRGQMRA--SGDPYLLHCVETAMLLA-AIGA-NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGV 271 (703)
Q Consensus 196 ~d~~~I~kA~~~A~~aH~GQ~Rk--sGePYI~Hpl~VA~ILa-~lg~-D~~tIaAALLHDvVEDT~vT~eeI~~~FG~eV 271 (703)
.+.+++.+|+.||.++|.||+|+ +|+|||.||++||.||+ ++|+ |.++++||||||++|||.+|.++|++.||++|
T Consensus 4 ~d~~~l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDvvEDt~~t~e~i~~~FG~~V 83 (179)
T 3nqw_A 4 YPSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTDASFEDVEKLFGPDV 83 (179)
T ss_dssp CCCHHHHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTHHHHSSCCHHHHHHHHCHHH
T ss_pred ccHHHHHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCCCCHHHHHHHHCHHH
Confidence 46688999999999999999998 69999999999999999 8998 99999999999999999999999999999999
Q ss_pred HHHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhcCCceeehhhhhhhHhhcccccCCCHHHH-HHHHHHHHHHHH
Q 005297 272 ADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKR-QRFAKETLEIFV 350 (703)
Q Consensus 272 A~LV~gVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAmaD~RVvLIKLADRLhNMRtL~~~~~ekq-~riA~ETl~IYa 350 (703)
+.||+||||++.+++..+ +..|.+++|+ .|+||++||||||+||||++...+++++ ..-+++....+.
T Consensus 84 a~lV~gvtk~~~~~~~~~------~~~q~e~~r~-----~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~ 152 (179)
T 3nqw_A 84 CGLVREVTDDKSLEKQER------KRLQIENAAK-----SSCRAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYFVWAK 152 (179)
T ss_dssp HHHHHHTCCCTTSCHHHH------HHHHHHSSTT-----SCHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCHHHH------HHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHhhCCcccccHHHHHHHHHHHH
Confidence 999999999998865332 3456777764 6999999999999999999988776653 233566777778
Q ss_pred Hhhhhc--CchhHHHHHHhhhhhc
Q 005297 351 PLANRL--GISTWKVQLENLCFKH 372 (703)
Q Consensus 351 PLA~RL--Gi~~iK~ELEDLafry 372 (703)
++++.| +-..+..+|.++.-+|
T Consensus 153 ~v~~~l~~~n~~l~~~~~~~~~~~ 176 (179)
T 3nqw_A 153 KVVDNLRGTNANLELKLDEIFRQR 176 (179)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHHHHHc
Confidence 888888 4446777777776554
No 5
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=274.78 Aligned_cols=145 Identities=32% Similarity=0.415 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHHHHhcCCcccc--CcchhHHHHHHHHHH-HHhCC-CHHHHHHHHhhccccccCCCHHHHHHhhCHHHH
Q 005297 197 REDFVIKAFYEAERAHRGQMRAS--GDPYLLHCVETAMLL-AAIGA-NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVA 272 (703)
Q Consensus 197 d~~~I~kA~~~A~~aH~GQ~Rks--GePYI~Hpl~VA~IL-a~lg~-D~~tIaAALLHDvVEDT~vT~eeI~~~FG~eVA 272 (703)
|.+++.+|+.||.++|.||+|++ |+|||.||++||.|| .++|+ |.++++||||||++|||.+|.++|++.||++|+
T Consensus 3 d~~~l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDvvEDt~~t~e~i~~~FG~~Va 82 (178)
T 3nr1_A 3 EAAQLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDTTLDEVELHFGAQVR 82 (178)
T ss_dssp HHHHHHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCCCCHHHHHHHHCHHHH
Confidence 56789999999999999999986 999999999999999 58996 999999999999999999999999999999999
Q ss_pred HHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhcCCceeehhhhhhhHhhcccccCCCHHH-----HHHHHHHHHH
Q 005297 273 DLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCK-----RQRFAKETLE 347 (703)
Q Consensus 273 ~LV~gVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAmaD~RVvLIKLADRLhNMRtL~~~~~ek-----q~riA~ETl~ 347 (703)
.||++|||++.+++..+ +..|.+++| ..|+||++||||||+||||++..++++. ..+|.+|...
T Consensus 83 ~lV~gvTk~~~~~~~~~------~~~q~e~~~-----~~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~~ 151 (178)
T 3nr1_A 83 RLVEEVTDDKTLPKLER------KRLQVEQAP-----HSSPGAKLVKLADKLYNLRDLNRCTPEGWSEHRVQEYFEWAAQ 151 (178)
T ss_dssp HHHHHTCCCTTSCHHHH------HHHHHHHGG-----GSCHHHHHHHHHHHHHHHHHHHHCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhhH------HHHHHHHHH-----hCCchhHHHHHHHHHHHHHHhhhCCccccCHHHHHHHHHHHHH
Confidence 99999999998765322 234677754 3699999999999999999988765543 4566666665
Q ss_pred HHHHh
Q 005297 348 IFVPL 352 (703)
Q Consensus 348 IYaPL 352 (703)
|..-|
T Consensus 152 v~~~l 156 (178)
T 3nr1_A 152 VVKGL 156 (178)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
No 6
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=99.67 E-value=9.3e-18 Score=144.24 Aligned_cols=66 Identities=18% Similarity=0.346 Sum_probs=59.1
Q ss_pred CCCCcccCCCCCCCCCeEEEEEeCCccceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCC
Q 005297 576 DDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLK 655 (703)
Q Consensus 576 ~d~iyvfTPkg~~~g~vfV~~~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk 655 (703)
.++||||||+| ++++||+|+|++||||+||+++++ +|++|||||++|+ ++++|+
T Consensus 5 ~~~i~v~tP~G----------------~~~~lp~GaT~~D~A~~Ih~~lg~---------~~v~AkVNG~~v~-L~~~L~ 58 (78)
T 3hvz_A 5 PEEVFVFTPKG----------------DVISLPIGSTVIDFAYAIHSAVGN---------RMIGAKVDGRIVP-IDYKVK 58 (78)
T ss_dssp -CEEEEECTTS----------------CEEEEETTCBHHHHHHHHCHHHHH---------TEEEEEETTEEEC-TTCBCC
T ss_pred CceEEEECCCC----------------CEEEecCCCCHHHHHHHhhhhhhc---------ceEEEEECCEEcC-CCcccC
Confidence 47899999995 799999999999999999998764 7999999999995 999999
Q ss_pred CCCEEEEeeCCC
Q 005297 656 MGDVVELTPAIP 667 (703)
Q Consensus 656 ~GDvVEIit~~p 667 (703)
+||+|||+|...
T Consensus 59 ~gd~VeIit~~~ 70 (78)
T 3hvz_A 59 TGEIIDVLTTKE 70 (78)
T ss_dssp TTCBEEEEECC-
T ss_pred CCCEEEEEccCc
Confidence 999999999653
No 7
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.23 E-value=5.6e-12 Score=111.35 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=58.7
Q ss_pred CCCcccC-CCCCCCCCeEEEEEeCCccceEec-CCCCCHhhhhHhhccCCCCCCCCCCCCcccc----ccccCCeecCCC
Q 005297 577 DCPFSYK-PQCSHDGPVFVIMIENDKMSVQEF-PTSSTVMDLLERAGRGSSRWSPYGFPLKEEL----RPRLNHKAVGDP 650 (703)
Q Consensus 577 d~iyvfT-Pkg~~~g~vfV~~~~g~~~~v~~L-P~GsTvlDfAy~i~~~~~~~~~~g~~~~~~i----gakVNg~~v~~l 650 (703)
+-|.||| |+|.. |. =+ +.+.| |+|+||.||||+||+++++ .|+.++ .||.|++.|+ +
T Consensus 10 ~lIrVYtk~~G~~--pd------~~--dpviL~~~GsTv~Dfa~~IH~di~~------~fkyA~VwG~saK~~~qrVg-l 72 (93)
T 2eki_A 10 KLVRIYTKPKGQL--PD------YT--SPVVLPYSRTTVEDFCMKIHKNLIK------EFKYALVWGLSVKHNPQKVG-K 72 (93)
T ss_dssp CEEEEEECCTTSC--CC------SS--SCEEEETTSCCHHHHHHHHCTTCTT------TEEEEEEBSTTSSSSSEEEC-S
T ss_pred CeEEEEeCCCCCC--CC------CC--CCEEEecCCCCHHHHHHHHHHHHHh------hccEEEEecccccCCCEECC-C
Confidence 3589999 87631 11 11 57889 9999999999999999875 356666 6899999995 9
Q ss_pred CCcCCCCCEEEEeeCC
Q 005297 651 RCKLKMGDVVELTPAI 666 (703)
Q Consensus 651 ~~~Lk~GDvVEIit~~ 666 (703)
+|+|++||||+|++..
T Consensus 73 dh~L~d~DVV~Iv~~~ 88 (93)
T 2eki_A 73 DHTLEDEDVIQIVKKS 88 (93)
T ss_dssp SCCCCSSEEECEEECC
T ss_pred CcEecCCCEEEEEeCC
Confidence 9999999999999854
No 8
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=98.78 E-value=2.6e-09 Score=88.80 Aligned_cols=62 Identities=21% Similarity=0.319 Sum_probs=51.1
Q ss_pred EEEEEeCCccceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCC
Q 005297 593 FVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIP 667 (703)
Q Consensus 593 fV~~~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~p 667 (703)
.|.+|+| +.+++|+|+|+.|+|+.++.+.+ ..+++|+|||+++ +++++|+.||.|||++...
T Consensus 4 ~i~~p~g---~~~~~~~g~T~~dla~~i~~~l~---------~~~vaa~vNg~lv-dl~~~L~~~~~Veivt~~~ 65 (73)
T 2kmm_A 4 MVFTPKG---EIKRLPQGATALDFAYSLHSDLG---------DHCIGAKVNHKLV-PLSYVLNSGDQVEVLSSKS 65 (73)
T ss_dssp EEECTTC---CEEEECTTCBHHHHHHHHCSHHH---------HTEEEEEETTEEC-CTTCBCCSSSBEEEEECCC
T ss_pred EEEcCCC---CEEEcCCCCcHHHHHHHHhhccc---------cceEEEEECCEEe-CCCcCcCCCCEEEEEECCC
Confidence 3444444 58999999999999999976543 3588999999999 5999999999999999553
No 9
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=98.68 E-value=9.9e-09 Score=88.84 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=55.2
Q ss_pred EEEEEeCCccceEecCC-CCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCCCccH
Q 005297 593 FVIMIENDKMSVQEFPT-SSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSL 671 (703)
Q Consensus 593 fV~~~~g~~~~v~~LP~-GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~p~~~l 671 (703)
-|.+|+| .++++|+ |+|+.|||+.++.+++ +.+++|||||+++ +|+++|+.|+.|||+|.....++
T Consensus 13 ~I~lpdG---~~~~~~~~~~T~~dia~~i~~~l~---------~~~vaakvNg~l~-dL~~~l~~d~~ve~vt~~~~eg~ 79 (88)
T 1wwt_A 13 KVTLPDG---KQVDAESWKTTPYQIACGISQGLA---------DNTVIAKVNNVVW-DLDRPLEEDCTLELLKFEDEEAQ 79 (88)
T ss_dssp EEECTTS---CEEEEETTTCCHHHHHHHSSTTTG---------GGCCCEEESSSEE-CSSSCCCSSEEEEECSSCCSCCS
T ss_pred EEEECCC---CEEEcccCCCCHHHHHHHhhhccc---------cceEEEEECCEEE-CCCcCcCCCCEEEEEeCCCHHHh
Confidence 3444445 5899998 9999999999988754 4789999999999 59999999999999997765554
No 10
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=98.59 E-value=1.2e-08 Score=102.80 Aligned_cols=79 Identities=16% Similarity=0.250 Sum_probs=67.2
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCCCccH--------HHH
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSL--------TEY 674 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~p~~~l--------~~~ 674 (703)
+++++|+|+|+.|||+.+|++.+ +.+++|||||++++ ++++|+.|+.|||+|.....++ .-+
T Consensus 10 ~~~~~~~g~T~~dia~~i~~~l~---------~~~vaakvNg~l~d-L~~~l~~~~~ve~it~~~~~g~~~~~HS~~HlL 79 (224)
T 1tke_A 10 SQRHYDHAVSPMDVALDIGPGLA---------KACIAGRVNGELVD-ACDLIENDAQLSIITAKDEEGLEIIRHSCAHLL 79 (224)
T ss_dssp CEEECSSCBCHHHHHHHHCHHHH---------HHCCEEEETTEEEE-TTCCBCSCEEEEEECTTSHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCHHHHHHHHhhhcc---------cceEEEEECCEEec-cceEcCCCCeEEEEecCchhHHHHHHHHHHHHH
Confidence 58999999999999999987654 37899999999995 9999999999999998765554 257
Q ss_pred HHHHHHHH-HcccCcCCC
Q 005297 675 REEIQRMY-ERGLAVSNT 691 (703)
Q Consensus 675 r~~i~rm~-~~~~~~~~~ 691 (703)
..+++++| ...++++++
T Consensus 80 ~~A~~~~~~~~~~~~g~~ 97 (224)
T 1tke_A 80 GHAIKQLWPHTKMAIGPV 97 (224)
T ss_dssp HHHHHHHSTTCEECCCCE
T ss_pred HHHHHHHCCCcEEEECCc
Confidence 89999999 666777765
No 11
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.51 E-value=2.1e-08 Score=109.21 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=47.4
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCcccccc--ccCCeecCCCCCcCCCCCEEEEeeCC
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRP--RLNHKAVGDPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~iga--kVNg~~v~~l~~~Lk~GDvVEIit~~ 666 (703)
+++.||+|+|+.||||+||+++++ .+++| ++|++.| +++|+|++||+|+|+|.+
T Consensus 341 ~~~~l~~G~t~~d~a~~iH~d~~~---------~f~~a~~~~~~~~~-g~~~~l~dgDvv~i~~~~ 396 (397)
T 1wxq_A 341 HVFLMKKGSTPRDLAFKVHTDLGK---------GFLYAINARTKRRV-GEDYELQFNDIVKIVSVT 396 (397)
T ss_dssp CCEEEETTCCHHHHHHHHCHHHHH---------TEEEEEETTTCSBC-CTTCCCCTTEEEEEEEC-
T ss_pred eeEEeCCCCCHHHHHHHHhHHHHh---------hhhhhHHhcCCEEc-CCCccccCCCEEEEEeCC
Confidence 688899999999999999999875 46677 7899999 599999999999999864
No 12
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=96.79 E-value=0.00025 Score=81.86 Aligned_cols=86 Identities=16% Similarity=0.253 Sum_probs=70.1
Q ss_pred EEEEeCCccceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCCCccH--
Q 005297 594 VIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSL-- 671 (703)
Q Consensus 594 V~~~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~p~~~l-- 671 (703)
|.+|+| .++++++|.|+.|+|-.|+.... +.++.|+|||+++ +++++|..+..||++|.....++
T Consensus 4 ~~~~d~---~~~~~~~~~t~~~~a~~i~~~~~---------~~~~~~~vng~~~-dl~~~l~~d~~~~~~~~~~~~~~~~ 70 (642)
T 1qf6_A 4 ITLPDG---SQRHYDHAVSPMDVALDIGPGLA---------KACIAGRVNGELV-DACDLIENDAQLSIITAKDEEGLEI 70 (642)
T ss_dssp EECTTS---CEEECSSCBCHHHHHHHHCHHHH---------HHCSEEEETTEEE-ETTSCBCSCEECCEECTTSHHHHHH
T ss_pred EEcCCC---CeEEecCCCCHHHHHHHhchhhh---------hheEEEEECCEEe-ccccccCCCceEEEeecCcHHHHHH
Confidence 445555 58999999999999999976543 4688999999999 69999999999999997765554
Q ss_pred ------HHHHHHHHHHH-HcccCcCCCC
Q 005297 672 ------TEYREEIQRMY-ERGLAVSNTG 692 (703)
Q Consensus 672 ------~~~r~~i~rm~-~~~~~~~~~~ 692 (703)
.-+.++++++| +..+++||+.
T Consensus 71 ~~HSa~HlL~~Al~~~~~~~~~~~G~~i 98 (642)
T 1qf6_A 71 IRHSCAHLLGHAIKQLWPHTKMAIGPVI 98 (642)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEECCCCEE
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEECCcc
Confidence 25799999999 7677777763
No 13
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.70 E-value=0.0022 Score=54.17 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=42.2
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCCC
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPD 668 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~p~ 668 (703)
..+++|.|+|+.|+.-.++-.. . .+-+.+||++|| .+..++ ||.|||++....
T Consensus 13 ~~~ev~~g~Tv~dLL~~Lgl~~----------~-~VvV~vNG~~v~-~d~~l~-GD~VeIv~~V~G 65 (74)
T 2l32_A 13 SEVAVDDDGTYADLVRAVDLSP----------H-EVTVLVDGRPVP-EDQSVE-VDRVKVLRLIKG 65 (74)
T ss_dssp EEEECSTTCSHHHHHHTTCCCS----------S-CCCEECCCCCCC-TTSSSC-CCCEEECSSCSC
T ss_pred eeEEcCCCCcHHHHHHHcCCCc----------c-eEEEEECCEECC-HHHCCC-CCEEEEEEeecc
Confidence 3579999999999998875432 2 335889999996 888776 999999987653
No 14
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=96.67 E-value=0.0014 Score=53.65 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=44.2
Q ss_pred EEeCCccceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCC----CCcCCCCCEEEEeeCC
Q 005297 596 MIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDP----RCKLKMGDVVELTPAI 666 (703)
Q Consensus 596 ~~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l----~~~Lk~GDvVEIit~~ 666 (703)
+.+| ..+++|.|+|+.|+.-.++... ..+.+-|||++|+ . ++.|+.||.|+|++..
T Consensus 4 ~vNg---~~~~~~~~~tv~~ll~~l~~~~-----------~~v~vavN~~~v~-~~~~~~~~L~~gD~v~i~~~V 63 (66)
T 1f0z_A 4 LFND---QAMQCAAGQTVHELLEQLDQRQ-----------AGAALAINQQIVP-REQWAQHIVQDGDQILLFQVI 63 (66)
T ss_dssp EESS---CEECCCTTCCHHHHHHHHTCCC-----------SSEEEEETTEEEC-HHHHTTCCCCTTEEECEEESC
T ss_pred EECC---EEEEcCCCCcHHHHHHHcCCCC-----------CCEEEEECCEECC-chhcCCcCCCCCCEEEEEeec
Confidence 4455 4789999999999998875331 2455789999996 4 7899999999999864
No 15
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=96.61 E-value=0.0023 Score=55.84 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=44.2
Q ss_pred EEEeCCccceEecCCC-CCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCC---CCcCCCCCEEEEeeCC
Q 005297 595 IMIENDKMSVQEFPTS-STVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDP---RCKLKMGDVVELTPAI 666 (703)
Q Consensus 595 ~~~~g~~~~v~~LP~G-sTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l---~~~Lk~GDvVEIit~~ 666 (703)
|+.+| ..+++|.| .|+.|+.-.++... ..+.+-|||++||.. ++.|+.||.|||++..
T Consensus 23 I~vNG---e~~el~~~~~Tv~dLL~~L~~~~-----------~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~~V 84 (87)
T 1tyg_B 23 LQLNG---KDVKWKKDTGTIQDLLASYQLEN-----------KIVIVERNKEIIGKERYHEVELCDRDVIEIVHFV 84 (87)
T ss_dssp EEETT---EEECCSSSCCBHHHHHHHTTCTT-----------SCCEEEETTEEECGGGTTTSBCCSSSEEEEEEEC
T ss_pred EEECC---EEEECCCCCCcHHHHHHHhCCCC-----------CCEEEEECCEECChhhcCCcCCCCCCEEEEEccc
Confidence 44555 57899998 99999998875331 234578999999621 5899999999999854
No 16
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=96.47 E-value=0.0021 Score=54.85 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=44.9
Q ss_pred EEEeCCccceEecC--CCCCHhhhhHhhccC-CCCCCCCCCCCccccccccCCeecCCC---CCcCCCCCEEEEeeCCC
Q 005297 595 IMIENDKMSVQEFP--TSSTVMDLLERAGRG-SSRWSPYGFPLKEELRPRLNHKAVGDP---RCKLKMGDVVELTPAIP 667 (703)
Q Consensus 595 ~~~~g~~~~v~~LP--~GsTvlDfAy~i~~~-~~~~~~~g~~~~~~igakVNg~~v~~l---~~~Lk~GDvVEIit~~p 667 (703)
|+.+| ..+++| .|.|+.|+.-..+-. . ..+.+-+||++||.- ++.|+.||.|||++...
T Consensus 3 I~vNG---e~~e~~~~~~~Tl~~LL~~l~~~~~-----------~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~Vg 67 (78)
T 2k5p_A 3 LTVNG---KPSTVDGAESLNVTELLSALKVAQA-----------EYVTVELNGEVLEREAFDATTVKDGDAVEFLYFMG 67 (78)
T ss_dssp EEETT---EEEECSSCSCEEHHHHHHHHTCSCT-----------TTCCEEETTEECCTTHHHHCEECSSBCEEECCCCC
T ss_pred EEECC---EEEEcCCCCCCcHHHHHHHcCCCCC-----------CcEEEEECCEECChHHcCcccCCCCCEEEEEeeec
Confidence 34455 478899 999999999887543 1 245678999999732 38999999999998553
No 17
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=96.44 E-value=0.0011 Score=56.09 Aligned_cols=52 Identities=29% Similarity=0.381 Sum_probs=42.4
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~ 666 (703)
..+++|.|+|+.|+...++... ..+.+-|||++|+ .++.|+.||.|+|++..
T Consensus 23 ~~~~~~~~~Tv~dLl~~L~~~~-----------~~v~VavNg~~v~-~~~~L~dGD~V~i~ppv 74 (77)
T 1rws_A 23 KEIEWREGMKVRDILRAVGFNT-----------ESAIAKVNGKVVL-EDDEVKDGDFVEVIPVV 74 (77)
T ss_dssp CCCCCCSSCCHHHHHHTTTCSS-----------CSSCEEETTEEEC-SSSCCCSSCCCBCSCCC
T ss_pred EEEECCCCCcHHHHHHHhCCCC-----------cCEEEEECCEECC-CCCCcCCCCEEEEEccc
Confidence 3668899999999998875331 2456789999996 89999999999999854
No 18
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.39 E-value=0.0042 Score=51.53 Aligned_cols=50 Identities=20% Similarity=0.177 Sum_probs=41.1
Q ss_pred EecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 005297 605 QEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 605 ~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~ 666 (703)
+++|.|.|+.|+.-.++... ..+-+-+||++|+ .+..|+.||.|+|++..
T Consensus 18 ~~~~~~~tv~~Ll~~l~~~~-----------~~v~vavN~~~v~-~~~~L~~gD~V~ii~~V 67 (70)
T 1ryj_A 18 LESGAPRRIKDVLGELEIPI-----------ETVVVKKNGQIVI-DEEEIFDGDIIEVIRVI 67 (70)
T ss_dssp EEESSCCBHHHHHHHTTCCT-----------TTEEEEETTEECC-TTSBCCTTCEEEEEECT
T ss_pred EECCCCCcHHHHHHHhCCCC-----------CCEEEEECCEECC-CcccCCCCCEEEEEecc
Confidence 78999999999988875331 2344779999996 88999999999999854
No 19
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=96.38 E-value=0.00041 Score=79.91 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=66.0
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCCCCccH--------HHH
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSL--------TEY 674 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~p~~~l--------~~~ 674 (703)
.++++|.|.|+.|+|-.|+.... +.++.|||||+++ +++++|..+..||++|.....++ ..+
T Consensus 12 ~~~~~~~g~t~~~ia~~~~~~~~---------~~~v~~~vng~~~-dl~~~l~~d~~v~~~~~~~~~g~~~~~HSa~HlL 81 (645)
T 1nyr_A 12 NKKAFDKGTTTEDIAQSISPGLR---------KKAVAGKFNGQLV-DLTKPLETDGSIEIVTPGSEEALEVLRHSTAHLM 81 (645)
T ss_dssp CCCBCCTTCCHHHHHHTTCHHHH---------HHCCEEEETTEEE-CTTSCCCSCBCCCEECTTSHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCHHHHHHHhhhhcc---------cCeEEEEECCEEE-eCCcccCCCCeEEEeeccchhHHHHHHHHHHHHH
Confidence 57899999999999998865432 3678999999999 69999999999999997765554 257
Q ss_pred HHHHHHHH-HcccCcCCCC
Q 005297 675 REEIQRMY-ERGLAVSNTG 692 (703)
Q Consensus 675 r~~i~rm~-~~~~~~~~~~ 692 (703)
.++++++| +..+.+||+.
T Consensus 82 ~~A~~~~~~~~~~~~g~~~ 100 (645)
T 1nyr_A 82 AHAIKRLYGNVKFGVGPVI 100 (645)
T ss_dssp HHHHHHHSSSCEECCCCEE
T ss_pred HHHHHHHcCCcEEEECCcc
Confidence 88999999 7777887753
No 20
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=96.33 E-value=0.0032 Score=53.00 Aligned_cols=52 Identities=19% Similarity=0.226 Sum_probs=41.1
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCC---CCcCCCCCEEEEeeCC
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDP---RCKLKMGDVVELTPAI 666 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l---~~~Lk~GDvVEIit~~ 666 (703)
..+++ .|.|+.|+.-..+-.. ..+.+-+||++||.- ++.|+.||.|||++..
T Consensus 8 ~~~e~-~~~Tl~~LL~~l~~~~-----------~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~~V 62 (73)
T 2kl0_A 8 EQREV-QSASVAALMTELDCTG-----------GHFAVALNYDVVPRGKWDETPVTAGDEIEILTPR 62 (73)
T ss_dssp EEECC-CCSBHHHHHHHTTCCS-----------SSCEEEESSSEECHHHHTTCBCCTTCEEEEECCC
T ss_pred EEEEc-CCCcHHHHHHHcCCCC-----------CcEEEEECCEECChHHcCcccCCCCCEEEEEccc
Confidence 47788 8999999998875432 245678999999632 4899999999999854
No 21
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=96.15 E-value=0.0034 Score=55.90 Aligned_cols=56 Identities=16% Similarity=0.096 Sum_probs=39.3
Q ss_pred eEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEee
Q 005297 604 VQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 604 v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
.+++|.|+|+.|+.-+.|-.-.. .... ......-|||++|+ +++.|+.||.|||.+
T Consensus 29 ~~~v~~g~TV~daI~~~gi~~~~-peId---l~~~~V~Vng~~v~-~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 29 SFQVDEGITVQTAITQSGILSQF-PEID---LSTNKIGIFSRPIK-LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEETTCBHHHHHHHHTHHHHC-TTCC---TTTSEEEEEECSCC-TTCBCCTTCEEEECC
T ss_pred EEEcCCCCcHHHHHHHcCCCccC-Cccc---ccccEEEEcCEECC-CCccCCCCCEEEEEe
Confidence 56899999999998776421000 0000 01123469999996 999999999999997
No 22
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=96.12 E-value=0.0059 Score=49.64 Aligned_cols=51 Identities=25% Similarity=0.299 Sum_probs=40.7
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCC----CcCCCCCEEEEeeCC
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPR----CKLKMGDVVELTPAI 666 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~----~~Lk~GDvVEIit~~ 666 (703)
..+++ .|+|+.|+.-.++... ..+.+-+||++|+ .+ +.|+.||.|+|++..
T Consensus 7 ~~~~~-~~~tv~~ll~~l~~~~-----------~~v~vavN~~~v~-~~~~~~~~L~dgD~v~i~~~V 61 (64)
T 2cu3_A 7 EPRPL-EGKTLKEVLEEMGVEL-----------KGVAVLLNEEAFL-GLEVPDRPLRDGDVVEVVALM 61 (64)
T ss_dssp EEECC-TTCCHHHHHHHHTBCG-----------GGEEEEETTEEEE-GGGCCCCCCCTTCEEEEEECC
T ss_pred EEEEc-CCCcHHHHHHHcCCCC-----------CcEEEEECCEECC-ccccCCcCCCCCCEEEEEeec
Confidence 46788 8999999998875431 2455789999996 44 899999999999864
No 23
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.0088 Score=64.85 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=40.9
Q ss_pred cCCC-CCHhhhhHhhccCCCCCCCCCCCCcccc----ccccCCeecCCCCCcCCCCCEEEEee
Q 005297 607 FPTS-STVMDLLERAGRGSSRWSPYGFPLKEEL----RPRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 607 LP~G-sTvlDfAy~i~~~~~~~~~~g~~~~~~i----gakVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
+++| ||+.|||..||++..+ + |..++ .+|-+||.+ ..+|.|++||||+|++
T Consensus 320 ~~a~~at~~D~a~~ih~d~~~----~--F~~a~v~Gs~~K~~~r~e-Gkdyvv~DGDVi~iv~ 375 (376)
T 4a9a_A 320 LRSDRCSVKDFCNQIHKSLVD----D--FRNALVYGSSVKHQPQYV-GLSHILEDEDVVTILK 375 (376)
T ss_dssp EBTTBCBHHHHHHHHCGGGGG----G--EEEEEEESTTSSSSSEEE-CTTCBCCTTCEEEEEE
T ss_pred ccCCCCcHHHHHHHHHHHHHH----h--hhHhhhcCcccCCCCCcc-CCCcEEcCCCEEEEEe
Confidence 4555 9999999999998754 2 44443 477888998 6999999999999986
No 24
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=95.40 E-value=0.0062 Score=50.69 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=40.5
Q ss_pred eEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 005297 604 VQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 604 v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~ 666 (703)
.+++|.|+|+.|+.-.++.....+. + + + +..-|||+.|+ .++.|++||.|+|++..
T Consensus 19 ~~~~~~~~tv~~ll~~l~~~~p~~~--~--v-~-~~v~vNg~~v~-~~~~L~~gD~V~i~ppv 74 (77)
T 2q5w_D 19 DIVLEQALTVQQFEDLLFERYPQIN--N--K-K-FQVAVNEEFVQ-KSDFIQPNDTVALIPPV 74 (77)
T ss_dssp ECCCSSCEEHHHHHHHHHHHCGGGT--T--C-C-CEEEETTEEEC-TTSEECTTCEEEEECSC
T ss_pred EEECCCCCCHHHHHHHHHHHCcchh--c--c-e-EEEEECCEECC-CCCCcCCCCEEEEECCC
Confidence 4678999999999877643321111 0 0 1 15679999995 89999999999999853
No 25
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.89 E-value=0.013 Score=63.15 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=42.6
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCcccc--------------ccccCC--eecCCCCCcCCCCCEEEEe
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL--------------RPRLNH--KAVGDPRCKLKMGDVVELT 663 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~i--------------gakVNg--~~v~~l~~~Lk~GDvVEIi 663 (703)
+...+++|+|+-|+|..||++..+ || .++. +||-.| |.+ ..+|.+++||||++.
T Consensus 291 raw~i~~G~ta~~aAg~IH~D~~~----gF--i~Aev~~~~d~~~~~~~~~~k~~g~~r~e-gk~y~v~dgDii~f~ 360 (363)
T 1jal_A 291 RAWTVSVGATAPKAAAVIHTDFEK----GF--IRAEVIAYEDFIQFNGENGAKEAGKWRLE-GKDYIVQDGDVMHFR 360 (363)
T ss_dssp EEEEEETTCBHHHHHHTTCTTHHH----HC--CEEEEECHHHHHHTTSHHHHHHTTCCEEE-CTTCBCCTTCEEEEE
T ss_pred ceeEecCCCcHHHHHHhhHHHHHh----cc--EEEEEcCHHHHHHhCCHHHHHhcCCeecc-CCccEecCCCEEEEE
Confidence 788999999999999999999876 42 2222 256556 566 589999999999985
No 26
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.50 E-value=0.015 Score=63.56 Aligned_cols=58 Identities=7% Similarity=0.064 Sum_probs=45.1
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCcccc--------------ccccCC--eecCCCCCcCCCCCEEEEeeCC
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL--------------RPRLNH--KAVGDPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~i--------------gakVNg--~~v~~l~~~Lk~GDvVEIit~~ 666 (703)
+...+++|+|+-|+|..||++..+ | |.++. +||-.| |.+ ..+|.+++||||++.-..
T Consensus 317 rawti~~g~ta~~aAg~IH~D~~~----g--Fi~Aev~~~~d~~~~g~~~~~k~~g~~r~~-Gk~y~v~dgDii~f~fn~ 389 (396)
T 2ohf_A 317 RAWTIRKGTKAPQAAGKIHTDFEK----G--FIMAEVMKYEDFKEEGSENAVKAAGKYRQQ-GRNYIVEDGDIIFFKFNT 389 (396)
T ss_dssp EEEEEETTCBHHHHHHTTCTHHHH----H--EEEEEEECHHHHHHHCSHHHHHHTTCCEEE-CTTCBCCTTCEEEEEEC-
T ss_pred eeEEecCCCcHHHHHhhhHHHHHh----c--ceEEEEccHHHHHHhCCHHHHHhcCccccc-CCCceeeCCCEEEEEecC
Confidence 688999999999999999999765 3 33333 456666 666 689999999999998755
Q ss_pred C
Q 005297 667 P 667 (703)
Q Consensus 667 p 667 (703)
+
T Consensus 390 ~ 390 (396)
T 2ohf_A 390 P 390 (396)
T ss_dssp -
T ss_pred C
Confidence 4
No 27
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.43 E-value=0.015 Score=62.74 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=42.7
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCcccc--------------ccccCC--eecCCCCCcCCCCCEEEEe
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL--------------RPRLNH--KAVGDPRCKLKMGDVVELT 663 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~i--------------gakVNg--~~v~~l~~~Lk~GDvVEIi 663 (703)
+...+++|+|+-|+|..||++..+ || .++. +||-.| |.+ ..+|.+++||||++.
T Consensus 296 ~aw~i~~g~ta~~~a~~IH~d~~~----~f--i~A~v~~~~d~~~~~~~~~~k~~g~~r~~-gk~y~v~dgdi~~~~ 365 (368)
T 2dby_A 296 RAWTVRRGTKAPRAAGEIHSDMER----GF--IRAEVIPWDKLVEAGGWARAKERGWVRLE-GKDYEVQDGDVIYVL 365 (368)
T ss_dssp EEEEEETTCBHHHHHHHHCHHHHH----SC--CEEEEEEHHHHHHHTSHHHHHHTTCCEEE-CTTCBCCTTEEEEEE
T ss_pred ceEEecCCCcHHHHHHhhHHHHHh----hC--eEEEEccHHHHHHhCCHHHHHhcCCcccc-CCCceecCCCEEEEE
Confidence 688999999999999999999866 42 3222 256556 566 589999999999985
No 28
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=94.29 E-value=0.033 Score=48.85 Aligned_cols=62 Identities=24% Similarity=0.319 Sum_probs=42.2
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCC-----CCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPY-----GFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~-----g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~ 666 (703)
..+++|.|+|+.|+--.+......+... | .....+..-|||+.|+ ++++|+.||.|+|+|..
T Consensus 29 ~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g-~~~~~v~v~VNg~~v~-~~~~L~dGDeV~i~ppv 95 (98)
T 1vjk_A 29 EEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGY-DEDADVNIAVNGRYVS-WDEELKDGDVVGVFPPV 95 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSS-CTTSSBEEEETTBCCC-TTCBCCTTCEEEEESCC
T ss_pred EEEECCCCCCHHHHHHHHHhHChhHHHHhhcccc-ccCCcEEEEECCEECC-CCCCCCCCCEEEEECCC
Confidence 3578899999999886653321111100 0 0113345779999995 89999999999999853
No 29
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=94.20 E-value=0.023 Score=48.62 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=42.1
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCC--CC--CCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSP--YG--FPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~--~g--~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~ 666 (703)
..+++|.|+|+.|+--.+......+.. +. -.+...+..-|||+.++ .+++|+.||.|.|+|..
T Consensus 20 ~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~-~~~~l~~gDeV~i~Ppv 86 (89)
T 3po0_A 20 VRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAA-LGEATAAGDELALFPPV 86 (89)
T ss_dssp EEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECC-TTSBCCTTCEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECC-CCcccCCCCEEEEECCC
Confidence 357899999999998665332211100 00 00112355679999995 89999999999999854
No 30
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=93.41 E-value=0.094 Score=43.55 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=40.5
Q ss_pred EecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 005297 605 QEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 605 ~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~ 666 (703)
+++ .|+|+.|+--.+.... .+.. ....+..-|||+.|++.+++|+.||.|+|+|..
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~-~l~~----~l~~~~vavN~~~v~~~~~~l~~gDeV~i~Ppv 71 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKE-GLKE----WLGVCAIALNDHLIDNLNTPLKDGDVISLLPPV 71 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCT-TTTT----TTTTCEEEESSSEECCTTCCCCTTCEEEEECCB
T ss_pred Eee-CCCcHHHHHHHHHHCc-CHHH----HhhccEEEECCEEcCCCCcCCCCCCEEEEECCC
Confidence 567 8999999987765431 1110 113455679999966799999999999999854
No 31
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=92.10 E-value=0.13 Score=42.85 Aligned_cols=56 Identities=25% Similarity=0.323 Sum_probs=37.9
Q ss_pred CCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCCCEEEEeeCC
Q 005297 608 PTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 608 P~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~GDvVEIit~~ 666 (703)
|.|+|+.|+--.+......+..+ .. ...+.+-|||+.++ ++++|+.||.|+|+|..
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~-l~-~~~~~v~vN~~~v~-~~~~l~~gD~V~i~Ppv 78 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALA-LE-DGKLLAAVNQTLVS-FDHPLTDGDEVAFFPPV 78 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHH-HC-CTTCEEEETTEECC-TTCBCCTTCEEEEECCC
T ss_pred CCCCCHHHHHHHHHHHChhHHHH-hc-CCCEEEEECCEECC-CCCCCCCCCEEEEeCCC
Confidence 78999999987765332110000 00 01234679999995 99999999999999854
No 32
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=91.83 E-value=0.52 Score=46.37 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH----hCCCHH-HHHHHHhhcccccc
Q 005297 199 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLDDA 256 (703)
Q Consensus 199 ~~I~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~----lg~D~~-tIaAALLHDvVEDT 256 (703)
+++.++.++......+. ....-+.|.++|+.+... .+.|.+ +.+||||||+....
T Consensus 5 ~li~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~~ 64 (209)
T 3b57_A 5 EIILSAKNWMHSHFENE---TTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIK 64 (209)
T ss_dssp HHHHHHHHHHHTTC---------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHHHHHhcC---CCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCccc
Confidence 45666666666654432 122238999999886643 367865 56899999997653
No 33
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=91.43 E-value=0.84 Score=45.87 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH----hCCCHH-HHHHHHhhcccc
Q 005297 198 EDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLD 254 (703)
Q Consensus 198 ~~~I~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~----lg~D~~-tIaAALLHDvVE 254 (703)
.+.|+++.+|+.+.+.+. .+..=+.|..+|+.+... .+.|.+ +.+||||||+..
T Consensus 4 ~~~i~~~~~~v~~~l~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~ 62 (223)
T 3dto_A 4 QAILQSAEAWVKKQLMDE---YSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLID 62 (223)
T ss_dssp HHHHHHHHHHHHHTTTTC-------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHhhcC---CCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 357888889988887653 233458899998875543 367755 568899999985
No 34
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=91.25 E-value=0.18 Score=42.77 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=40.7
Q ss_pred eEecCCCCCHhhhhHhhccCCCCCCCC------CCCCccccccccCCeecC---CCCCcCCCCCEEEEeeCC
Q 005297 604 VQEFPTSSTVMDLLERAGRGSSRWSPY------GFPLKEELRPRLNHKAVG---DPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 604 v~~LP~GsTvlDfAy~i~~~~~~~~~~------g~~~~~~igakVNg~~v~---~l~~~Lk~GDvVEIit~~ 666 (703)
-.++|.|+|+.|+--.+......+... | +...+.+-|||+.++ .++++|+.||.|+|+|..
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g--~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~ppv 87 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNN--LFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFPPV 87 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSC--STTTCEEEESSSBGGGTCSSSCBCCTTCEEEEECCT
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccC--cCcceEEEECCEEccccCCCCcCCCCCCEEEEeCCC
Confidence 467888999999886654321100000 0 012345789999985 268999999999999854
No 35
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=91.08 E-value=1.6 Score=43.22 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=51.5
Q ss_pred CcchhHHHHHHHHHHHHh----------CCCH-HHHHHHHhhccccc--cCC-C-H----HHHHHhhCHHHHHHHHHhhc
Q 005297 220 GDPYLLHCVETAMLLAAI----------GANS-TVVAAGLLHDTLDD--AFL-S-Y----DYIFRTFGAGVADLVEGVSK 280 (703)
Q Consensus 220 GePYI~Hpl~VA~ILa~l----------g~D~-~tIaAALLHDvVED--T~v-T-~----eeI~~~FG~eVA~LV~gVTK 280 (703)
++.-..|.++||.+..-+ ++|. .++.+|||||+.|- +++ | . .++.+.++..=..+++.+..
T Consensus 29 ~EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~~GDi~~p~k~~~~~~~~~~~~~E~~~~~~i~~ 108 (201)
T 2paq_A 29 TENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQKLVD 108 (201)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHHCCCCCC---------CTHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhcccccccCCCCCchHhhhchHHHHHhcccHHHHHHHHHH
Confidence 577889999998754322 3564 57788999999983 222 2 1 23434444322223333221
Q ss_pred ccccchhHhhccccchHHHHHHHHHHHhhc--CCceeehhhhhhhHhhc
Q 005297 281 LSQLSKLARENNTASKTVEADRLHTMFLAM--ADARAVLIKLADRLHNM 327 (703)
Q Consensus 281 l~~l~~~~r~~~~~~~~~qaE~lRkmLLAm--aD~RVvLIKLADRLhNM 327 (703)
.++. .+.+.++.+.... ..+.+.+||-||+|.-+
T Consensus 109 --~Lp~-----------~~~~e~~~l~~e~e~~t~ea~lvk~aD~l~a~ 144 (201)
T 2paq_A 109 --MVPE-----------ELRDIFAPLIDEHAYSDEEKSLVKQADALCAY 144 (201)
T ss_dssp --TSCG-----------GGHHHHHHHHTTTSCCHHHHHHHHHHHHHHHH
T ss_pred --hCCH-----------HHHHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Confidence 1111 1223444444333 24678899999999766
No 36
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=90.44 E-value=0.84 Score=45.75 Aligned_cols=56 Identities=23% Similarity=0.140 Sum_probs=37.7
Q ss_pred chHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH----hCCCHHH-HHHHHhhcccc
Q 005297 196 FREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANSTV-VAAGLLHDTLD 254 (703)
Q Consensus 196 ~d~~~I~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~----lg~D~~t-IaAALLHDvVE 254 (703)
.+.+.+.++.++......++ ....-+.|.++|+..... .+.|.++ .+||||||+..
T Consensus 7 ~~~~~i~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk 67 (231)
T 2pjq_A 7 ITETQLTAIQTYALQKLAHD---HSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID 67 (231)
T ss_dssp CCHHHHHHHHHHHHTSSTTC---CSSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHhcc---CCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc
Confidence 34456777777776665532 122238899999886643 3677664 58999999985
No 37
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=89.77 E-value=1.5 Score=43.76 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH-----hCCCHH-HHHHHHhhccccc
Q 005297 199 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA-----IGANST-VVAAGLLHDTLDD 255 (703)
Q Consensus 199 ~~I~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~-----lg~D~~-tIaAALLHDvVED 255 (703)
+++.++.++......++ ....-+.|.+.|+..... .+.|.+ +.+||||||+...
T Consensus 5 ~li~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk~ 64 (225)
T 2qgs_A 5 MKIKKAYEYMKSFHQHD---TTGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDS 64 (225)
T ss_dssp HHHHHHHHHHHHHTTTC---SSCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHhcC---CCccCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCCC
Confidence 45677777777765532 222347899999887433 355654 5699999999874
No 38
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=89.58 E-value=1.2 Score=44.60 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHh----CCCHH-HHHHHHhhccccc
Q 005297 198 EDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAI----GANST-VVAAGLLHDTLDD 255 (703)
Q Consensus 198 ~~~I~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~l----g~D~~-tIaAALLHDvVED 255 (703)
.+.|+++.+|+.+.+.+. .+..=+.|.++|+.+...+ +.|.+ +.+||||||+...
T Consensus 4 ~~~i~~~~~~v~~~l~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~~ 63 (223)
T 3djb_A 4 QEKIEKTITFVKHILEKD---ASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADE 63 (223)
T ss_dssp HHHHHHHHHHHHHHTTSS---SCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC-
T ss_pred HHHHHHHHHHHHHHhhcC---CCcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 357888999998887754 2334589999998866544 56655 5688999999863
No 39
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=89.41 E-value=0.09 Score=57.22 Aligned_cols=54 Identities=9% Similarity=0.030 Sum_probs=40.5
Q ss_pred ceEecCCCCCHhhhhHhhccCCCCCCCCCCCCcccc--------------ccccCCe--ecCCCCCcCCCCCEEEEe
Q 005297 603 SVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEEL--------------RPRLNHK--AVGDPRCKLKMGDVVELT 663 (703)
Q Consensus 603 ~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~i--------------gakVNg~--~v~~l~~~Lk~GDvVEIi 663 (703)
+...+++|+|+-|+|..||+|..+ || .++. +||=.|+ .. .-+|.+++||||++.
T Consensus 319 rawti~~G~~a~~aag~IH~d~~~----gf--i~ae~~~~~d~~~~g~~~~~k~~g~~r~~-gk~y~v~dgdv~~f~ 388 (392)
T 1ni3_A 319 RSWTIRKGTKAPQAAGVIHTDFEK----AF--VVGEIMHYQDLFDYKTENACRAAGKYLTK-GKEYVMESGDIAHWK 388 (392)
T ss_dssp EEEEEETTCBHHHHHHHHCHHHHH----TC--SEEEEECHHHHHHHTSHHHHHHTTCSCEE-ETTCBCCTTCEEECC
T ss_pred eeEEeCCCCcHHHHccccchhhhh----cc--EEEEECCHHHHHHcCCHHHHHHcCCcccc-CCceeeeCCCEEEEE
Confidence 789999999999999999999876 42 2222 2342233 34 478999999999874
No 40
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=87.54 E-value=0.39 Score=42.13 Aligned_cols=61 Identities=18% Similarity=0.198 Sum_probs=39.2
Q ss_pred eEecCCCCCHhhhhHhhccCCCCCCCC----CCCCcccc-------ccccCCeecC---CCCCcCCCCCEEEEeeCC
Q 005297 604 VQEFPTSSTVMDLLERAGRGSSRWSPY----GFPLKEEL-------RPRLNHKAVG---DPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 604 v~~LP~GsTvlDfAy~i~~~~~~~~~~----g~~~~~~i-------gakVNg~~v~---~l~~~Lk~GDvVEIit~~ 666 (703)
-.+++ |+|+.|+--.+......+... | .+...+ .+-|||+.|+ .++++|+.||.|+|+|..
T Consensus 22 ~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g-~l~~~v~~~~~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i~ppv 96 (99)
T 2l52_A 22 ELPLS-GEKVIDVLLSLTDKYPALKYVIFEKG-DEKSEILILCGSINILINGNNIRHLEGLETLLKDSDEIGILPPV 96 (99)
T ss_dssp EEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSC-CTTSSCCCBCSSCEEEETTSCGGGTTSTTSCCCTTEEEEEECCC
T ss_pred eEEEe-CCcHHHHHHHHHHHChhHHHHHhccc-ccccceeccccccEEEECCEEccccCCCCCCCCCCCEEEEECCC
Confidence 45677 899999886653221111100 0 011123 5679999984 478999999999999854
No 41
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=83.51 E-value=0.69 Score=39.68 Aligned_cols=60 Identities=20% Similarity=0.189 Sum_probs=38.7
Q ss_pred EecCCCCCHhhhhHhhccCCCCCCC-------CCCCCccccccccCCeecCC---CCCcCCCCCEEEEeeCC
Q 005297 605 QEFPTSSTVMDLLERAGRGSSRWSP-------YGFPLKEELRPRLNHKAVGD---PRCKLKMGDVVELTPAI 666 (703)
Q Consensus 605 ~~LP~GsTvlDfAy~i~~~~~~~~~-------~g~~~~~~igakVNg~~v~~---l~~~Lk~GDvVEIit~~ 666 (703)
++ +.|+|+.|+--.+......+.. -| .+...+..-|||+.++. ++++|+.||.|.|+|..
T Consensus 21 ~~-~~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g-~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~Ppv 90 (93)
T 3dwg_C 21 VS-ASGDTLGAVISDLEANYSGISERLMDPSSPG-KLHRFVNIYVNDEDVRFSGGLATAIADGDSVTILPAV 90 (93)
T ss_dssp EE-ECCSBHHHHHHHHHHHSTTHHHHHBCSSSTT-SBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEEECC
T ss_pred Ee-cCCCCHHHHHHHHHHHChhHHHHHhccccCC-cccCCEEEEECCEEccCcCCCCcCCCCCCEEEEECCC
Confidence 45 6899999998665322111000 00 01123556799999852 58999999999999854
No 42
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=77.60 E-value=2.4 Score=38.44 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=39.6
Q ss_pred eEecC---CCCCHhhhhHhhccCCCCCCC--C---CCCCccccccccCCeec---CCCCCcCCCCCEEEEeeCC
Q 005297 604 VQEFP---TSSTVMDLLERAGRGSSRWSP--Y---GFPLKEELRPRLNHKAV---GDPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 604 v~~LP---~GsTvlDfAy~i~~~~~~~~~--~---g~~~~~~igakVNg~~v---~~l~~~Lk~GDvVEIit~~ 666 (703)
.+++| .++|+.|+--.+......... + | .+...+-.-||++-+ ..++++|++||.|.|+++.
T Consensus 33 ~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g-~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~iip~v 105 (114)
T 1wgk_A 33 QVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGD-SVRPGILVLINDADWELLGELDYQLQDQDSILFISTL 105 (114)
T ss_dssp EEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSS-SCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEEECS
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCC-cccCCeEEEECCeeeeccCCcCcCCCCCCEEEEeCCC
Confidence 37788 347999987655333210000 0 0 123345578999843 3589999999999999865
No 43
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=76.84 E-value=1.8 Score=37.81 Aligned_cols=62 Identities=15% Similarity=0.189 Sum_probs=38.3
Q ss_pred eEecC--CCCCHhhhhHhhccCCCC-CCCC------CCCCccccccccCCeecC---CCCCcCCCCCEEEEeeCC
Q 005297 604 VQEFP--TSSTVMDLLERAGRGSSR-WSPY------GFPLKEELRPRLNHKAVG---DPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 604 v~~LP--~GsTvlDfAy~i~~~~~~-~~~~------g~~~~~~igakVNg~~v~---~l~~~Lk~GDvVEIit~~ 666 (703)
.+++| .|+|+.|+--.+...... +... + .+...+-.-||++.+. +++++|+.||.|-|+|..
T Consensus 23 ~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~-~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~Ppv 96 (99)
T 2qjl_A 23 KIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDD-SIRPGIITLINDTDWELEGEKDYILEDGDIISFTSTL 96 (99)
T ss_dssp EEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETT-EECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEECT
T ss_pred EEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCC-ccccCeEEEECCEEccccCCCCcCcCCCCEEEEECCC
Confidence 35678 899999987665322110 0000 0 0111223669999652 378999999999999853
No 44
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=72.98 E-value=3.5 Score=42.15 Aligned_cols=55 Identities=20% Similarity=0.109 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCC-HHHHHHHHhhcccc
Q 005297 200 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGAN-STVVAAGLLHDTLD 254 (703)
Q Consensus 200 ~I~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D-~~tIaAALLHDvVE 254 (703)
-|.+|++.-.......-.....|=+.|.++.|.....-|.| .-.+.||||||+=.
T Consensus 37 ti~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~d~dw~~laaLlHDLGk 92 (250)
T 2ibn_A 37 TVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGK 92 (250)
T ss_dssp CHHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHHHHHHHTTGGG
T ss_pred cHHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCcChhHHHHHHHHhccHh
Confidence 47777776655544443334567789999999999888998 44559999999743
No 45
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=71.41 E-value=2.5 Score=40.71 Aligned_cols=61 Identities=25% Similarity=0.280 Sum_probs=39.7
Q ss_pred eEecCCCCCHhhhhHhhccCCCCCCCC----CCCCccccccccCCeecCCC----CCcCCCCCEEEEeeCCC
Q 005297 604 VQEFPTSSTVMDLLERAGRGSSRWSPY----GFPLKEELRPRLNHKAVGDP----RCKLKMGDVVELTPAIP 667 (703)
Q Consensus 604 v~~LP~GsTvlDfAy~i~~~~~~~~~~----g~~~~~~igakVNg~~v~~l----~~~Lk~GDvVEIit~~p 667 (703)
-++++. +|+.|+--.+......+... + .+...+..-|||+.|+ . +++|+.||.|+|++...
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~-~l~~~v~VaVNg~~v~-~~~~~dt~L~dGDeVai~PpVs 85 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGE-GLAERVSVFLEGRDVR-YLQGLSTPLSPGATLDLFPPVA 85 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETT-EECTTCEEEETTEEGG-GTTGGGCBCCTTCEEEEECSCC
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhccc-ccCCcEEEEECCEECC-CcCCCccCCCCCCEEEEECccc
Confidence 457885 99999886654321111000 0 0012345779999996 5 89999999999998554
No 46
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=67.30 E-value=8.2 Score=37.80 Aligned_cols=50 Identities=14% Similarity=0.004 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH----hCCCHH-HHHHHHhhcc
Q 005297 200 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANST-VVAAGLLHDT 252 (703)
Q Consensus 200 ~I~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~----lg~D~~-tIaAALLHDv 252 (703)
.+.++.++..+...+ .....-+.|.+.|+.+... .+.|.+ ..+||||||+
T Consensus 14 l~~~~~~~v~~~~~~---~~~~h~~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDI 68 (220)
T 2pq7_A 14 LREILNIVREAFKDY---DDPAHDISHTFRVMENASEIASREKCDLQKAIIAALLHDI 68 (220)
T ss_dssp HHHHHHHHHHHHTTC---CCTTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhc---CCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcC
Confidence 455666777665542 2233457899999876543 466754 5689999999
No 47
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=63.15 E-value=8 Score=34.78 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=38.6
Q ss_pred eEecCC----CCCHhhhhHhhccCCCCCCC--C--CC--CCccccccccCCeec---CCCCCcCCCCCEEEEeeCC
Q 005297 604 VQEFPT----SSTVMDLLERAGRGSSRWSP--Y--GF--PLKEELRPRLNHKAV---GDPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 604 v~~LP~----GsTvlDfAy~i~~~~~~~~~--~--g~--~~~~~igakVNg~~v---~~l~~~Lk~GDvVEIit~~ 666 (703)
.+++|. ++|+.|+--.+-........ + +- .+...+-+-|||+.+ ..++|+|++||+|.|+++.
T Consensus 24 ~v~l~~~~g~~~TV~dLl~~L~~~~~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fistl 99 (110)
T 2k9x_A 24 SLQLDGVVPTGTNLNGLVQLLKTNYVKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFISTL 99 (110)
T ss_dssp EECCCCSCGGGCCHHHHHHHHTTTTCCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEEECC
T ss_pred EEEeCCcCCCCccHHHHHHHHHHHccccchhhEecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEEeCCC
Confidence 567884 35999987655333211000 0 00 011223467999866 3589999999999999854
No 48
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=59.12 E-value=7.2 Score=37.74 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=25.0
Q ss_pred chhHHHHHHHHHHH----HhCCCHH-HHHHHHhhccccc
Q 005297 222 PYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLDD 255 (703)
Q Consensus 222 PYI~Hpl~VA~ILa----~lg~D~~-tIaAALLHDvVED 255 (703)
..+.|.+.||.+.. .+|+|++ ..+||||||+=.-
T Consensus 26 ~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK~ 64 (196)
T 2ogi_A 26 KRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKE 64 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCCc
Confidence 35689999987554 4678754 5689999998553
No 49
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=55.56 E-value=6.6 Score=33.41 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=21.1
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 005297 639 RPRLNHKAVGDPRCKLKMGDVVELT 663 (703)
Q Consensus 639 gakVNg~~v~~l~~~Lk~GDvVEIi 663 (703)
.++|||+.+ ..+++|+.||+|+|.
T Consensus 27 ~V~VNg~~~-~~~~~v~~gd~I~v~ 50 (92)
T 2k6p_A 27 AVWLNGSCA-KASKEVKAGDTISLH 50 (92)
T ss_dssp CCEETTEEC-CTTCBCCTTCEEEEC
T ss_pred cEEECCEEc-CCCCCcCCCCEEEEE
Confidence 468999998 589999999999985
No 50
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=55.42 E-value=9.1 Score=36.71 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHH----HhCCCHH-HHHHHHhhccccc
Q 005297 223 YLLHCVETAMLLA----AIGANST-VVAAGLLHDTLDD 255 (703)
Q Consensus 223 YI~Hpl~VA~ILa----~lg~D~~-tIaAALLHDvVED 255 (703)
.+.|.+.||.+.. .+|+|++ ..+||||||+=.-
T Consensus 20 ~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk~ 57 (190)
T 3ccg_A 20 RYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKK 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC
Confidence 4689999987554 4578754 5689999998553
No 51
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=55.23 E-value=9.2 Score=36.61 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=25.0
Q ss_pred chhHHHHHHHHHHH----HhCCCHH-HHHHHHhhccccc
Q 005297 222 PYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLDD 255 (703)
Q Consensus 222 PYI~Hpl~VA~ILa----~lg~D~~-tIaAALLHDvVED 255 (703)
..+.|.+.||.+.. .+|+|.+ ..+||||||+=.-
T Consensus 18 ~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk~ 56 (188)
T 2o08_A 18 HRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKF 56 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 35689999987554 4578754 5689999998553
No 52
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=52.26 E-value=20 Score=35.41 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhc--CCcccc-------CcchhHHHHHHHHHHH---Hh---CCCH-HHHHHHHhhcccc
Q 005297 199 DFVIKAFYEAERAHR--GQMRAS-------GDPYLLHCVETAMLLA---AI---GANS-TVVAAGLLHDTLD 254 (703)
Q Consensus 199 ~~I~kA~~~A~~aH~--GQ~Rks-------GePYI~Hpl~VA~ILa---~l---g~D~-~tIaAALLHDvVE 254 (703)
+.+.+-+.|...+++ .+.|.+ .|.--.|-..||.+.. +. ++|. .++..||+||+.|
T Consensus 8 ~~l~~~~~Fl~~~~~LK~i~R~~~~~~~~r~EsVAeHS~~vAliA~~la~~~~~~vd~~r~~~maL~HDl~E 79 (200)
T 3kh1_A 8 SRLAAQMSFVVEIDKLKTILRQTLLTDSSRRENDAEHSWHIATMAFLLAEYADEAVQIGRVARMLLIHDIVE 79 (200)
T ss_dssp HHHHHHHHHHHHGGGGGGCEEEEECTTSSSEEEHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHhhCcCCcCCCcCCCCCCccHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHhcChHH
Confidence 345566666655543 333322 2556789999997643 32 3674 6888999999999
No 53
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=51.96 E-value=12 Score=35.91 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=26.8
Q ss_pred CcchhHHHHHHHHHH---HH------hCCCHH-HHHHHHhhccccc
Q 005297 220 GDPYLLHCVETAMLL---AA------IGANST-VVAAGLLHDTLDD 255 (703)
Q Consensus 220 GePYI~Hpl~VA~IL---a~------lg~D~~-tIaAALLHDvVED 255 (703)
.+.-..|-+.||.+. +. -+.|.. ++.+|||||+.|.
T Consensus 30 ~esvaeHs~rVa~~A~~la~~~~~~~~~~d~~~v~~~aLlHD~~E~ 75 (177)
T 2cqz_A 30 PESIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLAEA 75 (177)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHH
Confidence 355678999988765 43 357766 5889999999873
No 54
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=51.05 E-value=8.7 Score=34.25 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=36.4
Q ss_pred EecCCCCCHhhhhHh---hccCCCCCCCCCCCCccccc-------------cccCCeecCC--CCCcCCCCCEEEEe
Q 005297 605 QEFPTSSTVMDLLER---AGRGSSRWSPYGFPLKEELR-------------PRLNHKAVGD--PRCKLKMGDVVELT 663 (703)
Q Consensus 605 ~~LP~GsTvlDfAy~---i~~~~~~~~~~g~~~~~~ig-------------akVNg~~v~~--l~~~Lk~GDvVEIi 663 (703)
+. |.|+|++|+.-+ |..+-+.+|+ |...|. -++||++... -+++|++||.|++.
T Consensus 25 v~-t~g~tL~dvLk~~~~ve~e~s~~G~----fITsI~G~~ad~~~~~yW~~~vng~~~~~Ga~~~~v~dGD~i~~~ 96 (101)
T 3u7z_A 25 FD-TDAKYLGEVLESENLVDGESGEYGL----FITTVDEETADDSKQQWWCITKGGEQVNTSADQTPVSDGDAFELT 96 (101)
T ss_dssp EE-ECCSBHHHHHHHTTCEEEECCTTSC----EEEEETTEECCGGGTEEEEEEETTEECCSCGGGCBCCTTCEEEEE
T ss_pred Ec-CCccHHHHHHHHcCccccccccccc----eEEEEcCEecCCCCCCEEEEEECCEEhhhchhheEecCCCEEEEE
Confidence 55 999999999854 4444444442 344443 2478997621 35899999999986
No 55
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=50.90 E-value=11 Score=40.85 Aligned_cols=33 Identities=33% Similarity=0.350 Sum_probs=25.1
Q ss_pred chhHHHHHHHHHHH----HhCCCHH-HHHHHHhhcccc
Q 005297 222 PYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 254 (703)
Q Consensus 222 PYI~Hpl~VA~ILa----~lg~D~~-tIaAALLHDvVE 254 (703)
.-++|.++||.+.. .+|++++ +-+||||||+=-
T Consensus 75 tRl~HSl~Va~iar~ia~~l~l~~~l~~~a~LlHDiGh 112 (376)
T 2dqb_A 75 TRLTHTLEVAQVSRSIARALGLNEDLTEAIALSHDLGH 112 (376)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTTC
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCC
Confidence 34689999998654 5788866 458899999863
No 56
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=45.15 E-value=42 Score=33.25 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=52.6
Q ss_pred CcchhHHHHHHHHHHHHh---CCCH-HHHHHHHhhccccc--cCCCHHHHHHhhCHHHH-----HHHHHhhcccccchhH
Q 005297 220 GDPYLLHCVETAMLLAAI---GANS-TVVAAGLLHDTLDD--AFLSYDYIFRTFGAGVA-----DLVEGVSKLSQLSKLA 288 (703)
Q Consensus 220 GePYI~Hpl~VA~ILa~l---g~D~-~tIaAALLHDvVED--T~vT~eeI~~~FG~eVA-----~LV~gVTKl~~l~~~~ 288 (703)
.+.--.|-+.||.+..-+ ++|. .++..||+||+.|- +++|+- +..+.+.- ..++.+. ..++
T Consensus 43 ~ESVAEHS~~vAliA~~l~~~~vD~~r~~~maL~HDl~E~~tGDitp~---k~~~~~~k~~~E~~A~~~l~--~~LP--- 114 (204)
T 4dmb_A 43 PESVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECIVGDIAPA---DNIPKEEKHRREEEAMKQIT--QLLP--- 114 (204)
T ss_dssp CCBHHHHHHHHHHHHHHSCCTTSCHHHHHHHHHHTTTTHHHHCCCCGG---GCCCHHHHHHHHHHHHHHHH--TTSC---
T ss_pred CCcHHHHHHHHHHHHHHHccccCCHHHHHHHHHhcchHHhhcCCCccc---cccchhhhHHHHHHHHHHHH--HhCC---
Confidence 466778999999765544 3674 67889999999993 234421 00111100 1111111 1111
Q ss_pred hhccccchHHHHHHHHHHHhhc---CCceeehhhhhhhHhhcc
Q 005297 289 RENNTASKTVEADRLHTMFLAM---ADARAVLIKLADRLHNMM 328 (703)
Q Consensus 289 r~~~~~~~~~qaE~lRkmLLAm---aD~RVvLIKLADRLhNMR 328 (703)
..+.+.++.++.-. ..+.+.+||-||++.-+-
T Consensus 115 --------~~~~~e~~~Lw~Eye~~~t~Ea~~vK~aDkle~ll 149 (204)
T 4dmb_A 115 --------EDLRKELYELWEEYETQSSAEAKFVKQLDQCEMIL 149 (204)
T ss_dssp --------HHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 11234555555433 367899999999997664
No 57
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=44.94 E-value=8 Score=32.14 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=20.8
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 005297 639 RPRLNHKAVGDPRCKLKMGDVVELT 663 (703)
Q Consensus 639 gakVNg~~v~~l~~~Lk~GDvVEIi 663 (703)
.++|||+.+....++++.||+|+|-
T Consensus 47 ~V~VNG~~v~~~~~~v~~gd~I~v~ 71 (79)
T 1p9k_A 47 QVKVDGAVETRKRCKIVAGQTVSFA 71 (79)
T ss_dssp HHEETTBCCCCSSCCCCSSEEEEET
T ss_pred EEEECCEEecCCCCCCCCCCEEEEC
Confidence 4789999875578999999999873
No 58
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=40.95 E-value=22 Score=35.46 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=28.5
Q ss_pred CcchhHHHHHHHHHHHHh--CCCHHHHHHHHhhccccc
Q 005297 220 GDPYLLHCVETAMLLAAI--GANSTVVAAGLLHDTLDD 255 (703)
Q Consensus 220 GePYI~Hpl~VA~ILa~l--g~D~~tIaAALLHDvVED 255 (703)
-+.--.|.+.||.+...+ +.|...+.+||+||+.|-
T Consensus 53 ~eSVAeHS~~va~ia~~l~~~~~~r~~~~aL~HD~~E~ 90 (207)
T 2gz4_A 53 AFTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEY 90 (207)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTCCHHHHHHHHTTTTTHH
T ss_pred CccHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCchHh
Confidence 355678999999876543 467889999999999984
No 59
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=39.77 E-value=15 Score=33.90 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=21.1
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 005297 639 RPRLNHKAVGDPRCKLKMGDVVELT 663 (703)
Q Consensus 639 gakVNg~~v~~l~~~Lk~GDvVEIi 663 (703)
.++|||+.+ ..++.|+.||+|+|.
T Consensus 35 ~V~VNG~~v-k~s~~V~~GD~I~I~ 58 (133)
T 1dm9_A 35 KVHYNGQRS-KPSKIVELNATLTLR 58 (133)
T ss_dssp CEEETTEEC-CTTCBCCTTCEEEEE
T ss_pred cEEECCEEc-CCCCEeCCCCEEEEE
Confidence 368999998 589999999999986
No 60
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=39.71 E-value=11 Score=34.38 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.3
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 005297 639 RPRLNHKAVGDPRCKLKMGDVVELT 663 (703)
Q Consensus 639 gakVNg~~v~~l~~~Lk~GDvVEIi 663 (703)
|..|||+.|. -.++|++||+|.|=
T Consensus 91 gt~VNG~~V~-~~~~L~~GD~I~lG 114 (124)
T 3fm8_A 91 RTFVNGSSVS-SPIQLHHGDRILWG 114 (124)
T ss_dssp CEEETTEECC-SCEEECTTCEEEET
T ss_pred CEEECCEEcC-CcEECCCCCEEEEC
Confidence 5689999994 56899999999874
No 61
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=38.92 E-value=19 Score=38.74 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=26.7
Q ss_pred cchhHHHHHHHHHHH----HhCCCH--HHHHHHHhhccccc
Q 005297 221 DPYLLHCVETAMLLA----AIGANS--TVVAAGLLHDTLDD 255 (703)
Q Consensus 221 ePYI~Hpl~VA~ILa----~lg~D~--~tIaAALLHDvVED 255 (703)
...+.|.+.||.+.. .++.+. ...+||||||+-.-
T Consensus 49 ~~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~~ 89 (371)
T 2hek_A 49 HTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHP 89 (371)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCC
T ss_pred CChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcc
Confidence 456899999987554 467775 57799999998764
No 62
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=35.21 E-value=16 Score=34.37 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.3
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 005297 639 RPRLNHKAVGDPRCKLKMGDVVELT 663 (703)
Q Consensus 639 gakVNg~~v~~l~~~Lk~GDvVEIi 663 (703)
|..|||+.|. -.+.|++||+|.|=
T Consensus 111 gt~VNG~~i~-~~~~L~~GD~I~~G 134 (154)
T 4ejq_A 111 DTYVNGKKVT-EPSILRSGNRIIMG 134 (154)
T ss_dssp CEEETTEECC-SCEECCTTCEEEET
T ss_pred ceEECCEEcC-CceECCCCCEEEEC
Confidence 6789999984 56889999999884
No 63
>4a5p_A Protein MXIA, protein VIRH; protein transport, type three secretion, export apparatus; HET: MLY; 3.15A {Shigella flexneri}
Probab=34.40 E-value=51 Score=35.71 Aligned_cols=190 Identities=12% Similarity=0.180 Sum_probs=107.2
Q ss_pred CCHHHHHHHHhhccccccC---CCHHHHHH---hhCHHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHH---hh
Q 005297 239 ANSTVVAAGLLHDTLDDAF---LSYDYIFR---TFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMF---LA 309 (703)
Q Consensus 239 ~D~~tIaAALLHDvVEDT~---vT~eeI~~---~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~~~~qaE~lRkmL---LA 309 (703)
.|+.+++|.-|..++.... ++.+|++. ...++-.+||+.+.+.-.+.. -.+-||++| ++
T Consensus 173 vd~~tViaTHLsevik~~a~ellg~QEvq~LLd~L~~~~P~LVeEl~~~l~l~~------------i~~VLq~LL~E~Vs 240 (383)
T 4a5p_A 173 XSAQDEFYHQLSQALLNNINEIFGIQETKNMLDQFENRYPDLLXEVFRHVTIQR------------ISEVLQRLLGENIS 240 (383)
T ss_dssp BCHHHHHHHHHHHHHHTTGGGTSCHHHHHHHHHHHHTTCHHHHHHHHTTCCHHH------------HHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHHHhHHHHhCHHHHHHHHHHHHHhChHHHHHHHccCCHHH------------HHHHHHHHHhCCCC
Confidence 4888888888888887643 56665443 234444456666643222211 134566655 23
Q ss_pred cCCceeehhhhhhhHhhcccccCCCHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHhhhhhccCcchhhHHHHHHHhhh
Q 005297 310 MADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF 389 (703)
Q Consensus 310 maD~RVvLIKLADRLhNMRtL~~~~~ekq~riA~ETl~IYaPLA~RLGi~~iK~ELEDLafryL~P~~y~~i~~~l~~~~ 389 (703)
+.|.|.++=-|||.-..-+....+.+.-|.++++-.-.-|++- +.|-+..+-.++|++-...+....-.. .+. .
T Consensus 241 IRdlrtIlEtLae~a~~~kD~~~LtE~VR~aL~R~I~~~~~~~-~~L~vi~L~p~lE~~l~~si~~t~~g~---~la--L 314 (383)
T 4a5p_A 241 VRNLKLIMESLALWAPREXDVITLVEHVRASLSRYICSKIAVS-GEIXVVMLSGYIEDAIRXGIRQTSGGS---FLN--M 314 (383)
T ss_dssp CSCHHHHHHHHHHHTTTCCCHHHHHHHHHHHTHHHHHHHHCBT-TEEEEEECCHHHHHHHHHTEECC---------C--C
T ss_pred cccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCC-CeEEEEEeCHHHHHHHHHHhcccCCCC---ccC--C
Confidence 4488888888888877666666677777888887655445443 556667788888887665554321100 010 0
Q ss_pred hhhhHHHHHHHHHHHHH---hcCCceecccccccChHHHHHHHhhcCC------CCCcccccEEEEEE
Q 005297 390 DEAMVTSAIEKLEQALK---DKNISFLVLCGRHKSLYSIHCKMLKKKL------TMDEIHDIYGLRLI 448 (703)
Q Consensus 390 ~e~~i~~v~~~L~~~L~---~~gI~~~~V~gR~K~~ySI~~Km~rk~~------~~~~I~Dl~giRII 448 (703)
.....+.+++.+++.++ ..|....-++.- .+=...+|+.++.. ++.||.+=.-++++
T Consensus 315 ~P~~~~~l~~~l~~~~~~~~~~g~~pVLLts~--~iR~~lrrlle~~~p~l~VLS~~EI~~~~~i~~v 380 (383)
T 4a5p_A 315 DIEVSDEVMETLAHALRELRNAXXNFVLLVSV--DIRRFVXRLIDNRFXSILVISYAEIDEAYTINVL 380 (383)
T ss_dssp EECCCHHHHHHHHHHHHHHHSSSCCCEEEECT--TTHHHHHHHHHTTCSSSCEEETTSCCSSCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCeEEEcCH--HHHHHHHHHHHHhcCCceEEeHHHcCCCCceEEE
Confidence 11222333444444333 235433223322 13346677777653 47889887777765
No 64
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=34.17 E-value=45 Score=34.72 Aligned_cols=53 Identities=19% Similarity=0.138 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCC-HHHHHHHHhhcc
Q 005297 200 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGAN-STVVAAGLLHDT 252 (703)
Q Consensus 200 ~I~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D-~~tIaAALLHDv 252 (703)
-|.+|++.-.......-.....|=|.|.++.|+....-+-+ .=...+||+||.
T Consensus 76 tIweA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~pp~dW~qLtGLiHDL 129 (289)
T 2huo_A 76 TIMEAVGMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDL 129 (289)
T ss_dssp CHHHHHHHGGGCCCSSCTTCCSCHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTG
T ss_pred cHHHHHHHHHHhcCCcCCccchhHHHHHHHHHHHHHHhCCCcchheeeeecccc
Confidence 47777777666655554456789999999999999877877 446688999997
No 65
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=31.91 E-value=24 Score=33.44 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=21.6
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEee
Q 005297 639 RPRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 639 gakVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
.++|||+.|..+.+.++.||+|+|..
T Consensus 77 ~V~VNG~~v~~ps~~V~~gD~I~V~~ 102 (159)
T 1c05_A 77 HILVDGSRVNIPSYRVKPGQTIAVRE 102 (159)
T ss_dssp CEEETTEECCCSSCBCCTTCEEEECG
T ss_pred CEEECCEEeCcCCcEeCCCCEEEEeC
Confidence 36899999844799999999999863
No 66
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=31.10 E-value=17 Score=31.63 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=19.7
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 005297 639 RPRLNHKAVGDPRCKLKMGDVVELT 663 (703)
Q Consensus 639 gakVNg~~v~~l~~~Lk~GDvVEIi 663 (703)
|..|||+.+. ....|++||+|.|=
T Consensus 70 Gt~vng~~i~-~~~~L~~Gd~i~~G 93 (106)
T 3gqs_A 70 GVIVEGRKIE-HQSTLSANQVVALG 93 (106)
T ss_dssp CCEETTEECS-SEEECCTTCCEEET
T ss_pred CeEECCEECC-CCeECCCCCEEEEC
Confidence 6689999885 45799999999874
No 67
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=30.90 E-value=72 Score=36.03 Aligned_cols=79 Identities=9% Similarity=0.027 Sum_probs=45.7
Q ss_pred EEEeCCccceEecCCCCCHhhhhHhhccCCCCC-C-----C-CCCCCccccccccCCe-ecCCCCCcCCCCCEEEEeeCC
Q 005297 595 IMIENDKMSVQEFPTSSTVMDLLERAGRGSSRW-S-----P-YGFPLKEELRPRLNHK-AVGDPRCKLKMGDVVELTPAI 666 (703)
Q Consensus 595 ~~~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~~-~-----~-~g~~~~~~igakVNg~-~v~~l~~~Lk~GDvVEIit~~ 666 (703)
|+++| ..+++|+|.|++|.|.++|-.+... + . .| ..-.| -+.|||+ ++..=.+++..|.+|+ |..
T Consensus 4 ~~ing---~~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G-~Cg~C-~V~v~g~~~~~aC~t~v~~gm~V~--T~~ 76 (574)
T 3c8y_A 4 IIING---VQFNTDEDTTILKFARDNNIDISALCFLNNCNNDIN-KCEIC-TVEVEGTGLVTACDTLIEDGMIIN--TNS 76 (574)
T ss_dssp EEETT---EEEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSS-CCCTT-EEEETTTEEEEGGGCBCCTTCEEE--SSC
T ss_pred EEECC---EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcc-cCCCC-EEEeCCCcccccCCCCcccceeEE--ecc
Confidence 44555 4778999999999999886533221 1 0 11 00011 2578998 6643346777777655 322
Q ss_pred CCccHHHHHHHHHHHH
Q 005297 667 PDKSLTEYREEIQRMY 682 (703)
Q Consensus 667 p~~~l~~~r~~i~rm~ 682 (703)
.-....|+.+++++
T Consensus 77 --~~~~~~r~~~lell 90 (574)
T 3c8y_A 77 --DAVNEKIKSRISQL 90 (574)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --hhhhhhHHHHHHHH
Confidence 22456666666666
No 68
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=30.60 E-value=19 Score=32.18 Aligned_cols=25 Identities=8% Similarity=0.179 Sum_probs=20.3
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEee
Q 005297 639 RPRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 639 gakVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
|..|||+.|. -.++|++||+|.|=.
T Consensus 81 gt~vNg~~i~-~~~~L~~GD~I~iG~ 105 (120)
T 1wln_A 81 ETYVDGQRIS-ETTMLQSGMRLQFGT 105 (120)
T ss_dssp CEEETSCBCS-SCEEECTTCEEEETT
T ss_pred CEEECCEEcC-CCEECCCCCEEEECC
Confidence 5689999985 456999999998853
No 69
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=29.15 E-value=22 Score=30.54 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=19.5
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 005297 639 RPRLNHKAVGDPRCKLKMGDVVELT 663 (703)
Q Consensus 639 gakVNg~~v~~l~~~Lk~GDvVEIi 663 (703)
|..|||+.+. .++|++||+|.|=
T Consensus 66 Gt~vng~~i~--~~~L~~gd~i~iG 88 (100)
T 3po8_A 66 GTTVNNAPVQ--EWQLADGDVIRLG 88 (100)
T ss_dssp CCEETTEECS--EEECCTTCEEEET
T ss_pred CEEECCEECc--eEECCCCCEEEEC
Confidence 5689999884 6899999999873
No 70
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=28.74 E-value=46 Score=32.25 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=26.7
Q ss_pred CcchhHHHHHHHHH---HHH------hCCCHH-HHHHHHhhcccc
Q 005297 220 GDPYLLHCVETAML---LAA------IGANST-VVAAGLLHDTLD 254 (703)
Q Consensus 220 GePYI~Hpl~VA~I---La~------lg~D~~-tIaAALLHDvVE 254 (703)
.+.-..|-+.||.+ |+. -++|.+ ++..||+||+.|
T Consensus 35 ~EsvAeHS~~vA~ia~~la~~~~~~~~~~d~~r~~~~aL~HDl~E 79 (184)
T 1xx7_A 35 PESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGE 79 (184)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHcCcHH
Confidence 35567899998874 454 367875 788999999998
No 71
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=28.40 E-value=73 Score=26.39 Aligned_cols=69 Identities=9% Similarity=0.100 Sum_probs=38.5
Q ss_pred eEEEEEeCCccceEe-cCCCCCHhhhhHhhccCCCCCCCCCCCCcccccccc-----CCeecCCCCCcCCCCCEEEEeeC
Q 005297 592 VFVIMIENDKMSVQE-FPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRL-----NHKAVGDPRCKLKMGDVVELTPA 665 (703)
Q Consensus 592 vfV~~~~g~~~~v~~-LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakV-----Ng~~v~~l~~~Lk~GDvVEIit~ 665 (703)
|+|-++.|. .++. |+..+|+.|+.-.|....+ +......+......|. +++.+ -++-|++|++|-+...
T Consensus 3 i~vr~~~G~--~~v~~l~~~~Tv~~Lk~~I~~~~g-i~~~~qrL~~~~p~k~l~l~~~~~tL--~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 3 VRCKAKGGT--HLLQGLSSRTRLRELQGQIAAITG-IAPGSQRILVGYPPECLDLSDRDITL--GDLPIQSGDMLIVEED 77 (86)
T ss_dssp EEEEETTEE--EEECSCCTTCBHHHHHHHHHHHTC-CCTTTCCCEESSCCCCCCCCCSSCBT--TTSSCCTTCEEECCCC
T ss_pred EEEEcCCCC--EEeeecCCCCCHHHHHHHHHHHhC-CCccceEEEeCCCCcccccCCCCCCH--HHcCCCCCCEEEEEeC
Confidence 456666664 4566 9999999999988743322 1100000110000111 34444 3678999999877753
No 72
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=27.80 E-value=29 Score=34.39 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=21.4
Q ss_pred cccCCeecCCCCCcCCCCCEEEEee
Q 005297 640 PRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 640 akVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
++|||+.|..+.+.++.||+|+|..
T Consensus 126 V~VNG~~v~~ps~~V~~gD~I~V~~ 150 (209)
T 2vqe_D 126 ITVNGRRVDLPSYRVRPGDEIAVAE 150 (209)
T ss_dssp EEETTEECCCTTCBCCTTCEEEECG
T ss_pred EEECCEEeCcCCcCcCCCCEEEEcC
Confidence 6899999844799999999999963
No 73
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=27.76 E-value=97 Score=29.83 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=26.2
Q ss_pred cchhHHHHHHHHH---HHH-hCCCH----HHHHHHHhhcccc
Q 005297 221 DPYLLHCVETAML---LAA-IGANS----TVVAAGLLHDTLD 254 (703)
Q Consensus 221 ePYI~Hpl~VA~I---La~-lg~D~----~tIaAALLHDvVE 254 (703)
+.--.|-..||.+ |+. .++|. .++..||+||+.|
T Consensus 37 EsVAeHS~~vA~iA~~la~~~~vd~~~~~r~~~maL~HDl~E 78 (173)
T 1ynb_A 37 ESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLHE 78 (173)
T ss_dssp CBHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTH
T ss_pred CcHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHcchHH
Confidence 5567899999887 665 36776 4577899999998
No 74
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=27.11 E-value=35 Score=29.97 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=21.0
Q ss_pred ccccCCeecCC-CCCcCCCCCEEEEeeC
Q 005297 639 RPRLNHKAVGD-PRCKLKMGDVVELTPA 665 (703)
Q Consensus 639 gakVNg~~v~~-l~~~Lk~GDvVEIit~ 665 (703)
|..|||+.+.. -.++|++||+|.|-..
T Consensus 69 Gt~vng~~l~~~~~~~L~~GD~i~~G~~ 96 (116)
T 1lgp_A 69 GTVINKLKVVKKQTCPLQTGDVIYLVYR 96 (116)
T ss_dssp CCCCCCCCCCCSSCCCCCTTCEEEEECC
T ss_pred CcEECCEEcCCCCcEECCCCCEEEEecc
Confidence 56799998741 1489999999999864
No 75
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=25.94 E-value=27 Score=38.20 Aligned_cols=32 Identities=28% Similarity=0.276 Sum_probs=23.1
Q ss_pred chhHHHHHHHHHHHH----hC-----CC----HHHHHHHHhhccc
Q 005297 222 PYLLHCVETAMLLAA----IG-----AN----STVVAAGLLHDTL 253 (703)
Q Consensus 222 PYI~Hpl~VA~ILa~----lg-----~D----~~tIaAALLHDvV 253 (703)
.-+.|.++|+.+... ++ ++ ..+.+||||||+=
T Consensus 55 tRf~HSLgV~~la~~l~~~l~~~~~~~~~~d~~~~~~AaLlHDiG 99 (410)
T 2q14_A 55 TRFQHSLGAFYLMSEAITQLTSKGNFIFDSEAEAVQAAILLHDIG 99 (410)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTTT
T ss_pred CeeehHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC
Confidence 458999999986653 33 23 3467999999984
No 76
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=25.76 E-value=31 Score=31.48 Aligned_cols=23 Identities=35% Similarity=0.754 Sum_probs=18.6
Q ss_pred ccccCCeecCCCC--CcCCCCCEEEE
Q 005297 639 RPRLNHKAVGDPR--CKLKMGDVVEL 662 (703)
Q Consensus 639 gakVNg~~v~~l~--~~Lk~GDvVEI 662 (703)
|-.|||+.++ .. ++|++||+|.|
T Consensus 95 GT~vNg~ri~-~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 95 GTFLNKTRIP-PRTYCRVHVGHVVRF 119 (130)
T ss_dssp CEEETTEECC-TTCCEECCTTCEEEE
T ss_pred ceEECCEECC-CCceeECCCCCEEEE
Confidence 6789999885 33 47999999987
No 77
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=25.17 E-value=18 Score=36.00 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=21.2
Q ss_pred cccCCeecCCCCCcCCCCCEEEEee
Q 005297 640 PRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 640 akVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
++|||+.|..+++.++.||+|+|-.
T Consensus 122 V~VNG~~V~~ps~~Vk~GD~I~V~~ 146 (205)
T 3r8n_D 122 IMVNGRVVNIASYQVSPNDVVSIRE 146 (205)
T ss_dssp CBSSSSBCCCTTCBCCTTBCCBCCS
T ss_pred EEECCEEEccCCcCcCCCCEEEecC
Confidence 5899998844799999999998854
No 78
>4f43_A Protelomerase; recombination-DNA complex; HET: DNA; 2.35A {Agrobacterium tumefaciens} PDB: 4f41_A*
Probab=25.06 E-value=83 Score=33.26 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=24.6
Q ss_pred hhhhhhccccccCCCCcccccCCcccccCCchhhhhh
Q 005297 128 FVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDE 164 (703)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (703)
=|||||-.|.+-+-|-.+. +|++|.+.+|
T Consensus 74 ~~~n~l~~~~~~~hp~l~~--------~~~~~~~~~~ 102 (320)
T 4f43_A 74 KYRNAIREAFGDDHPMLKI--------ATGDAAMYDE 102 (320)
T ss_dssp HHHHHHHHHTCTTCTHHHH--------SCCCHHHHHH
T ss_pred HHHHHHHHHhCCCCchHhh--------ccCCHHHHhH
Confidence 4899999999988887774 7889998885
No 79
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=25.06 E-value=58 Score=33.98 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=24.5
Q ss_pred cCcchh-HHHHHHHHHHH----HhCCCH----H-HHHHHHhhccc
Q 005297 219 SGDPYL-LHCVETAMLLA----AIGANS----T-VVAAGLLHDTL 253 (703)
Q Consensus 219 sGePYI-~Hpl~VA~ILa----~lg~D~----~-tIaAALLHDvV 253 (703)
...+|. .|.+.||.+.. .+|++. . ...||||||+=
T Consensus 162 ~~~~~~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDIG 206 (328)
T 3tm8_A 162 NTDKTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYG 206 (328)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTGG
T ss_pred hcCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCC
Confidence 445555 69999987654 457764 3 45699999984
No 80
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=24.96 E-value=38 Score=33.44 Aligned_cols=38 Identities=37% Similarity=0.426 Sum_probs=32.3
Q ss_pred HHHHHHHhCC---CHHHHHHHHhhccccccCCCHHHHHHhhCHHH
Q 005297 230 TAMLLAAIGA---NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGV 271 (703)
Q Consensus 230 VA~ILa~lg~---D~~tIaAALLHDvVEDT~vT~eeI~~~FG~eV 271 (703)
|+.+|+++|. |.|.++ |++++.....+++|.+.||+++
T Consensus 25 v~~~l~~~g~~vidaD~ia----~~l~~~~~~~~~~i~~~fG~~~ 65 (210)
T 4i1u_A 25 VADLFAARGASLVDTDLIA----HRITAPAGLAMPAIEQTFGPAF 65 (210)
T ss_dssp HHHHHHHTTCEEEEHHHHH----HHHTSTTCTTHHHHHHHHCGGG
T ss_pred HHHHHHHCCCcEEECcHHH----HHHhcCCcHHHHHHHHHhChhh
Confidence 5778888885 788877 8999988889999999999885
No 81
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=24.90 E-value=31 Score=34.24 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=21.4
Q ss_pred cccCCeecCCCCCcCCCCCEEEEee
Q 005297 640 PRLNHKAVGDPRCKLKMGDVVELTP 664 (703)
Q Consensus 640 akVNg~~v~~l~~~Lk~GDvVEIit 664 (703)
++|||+.|..+.+.++.||+|+|-.
T Consensus 116 V~VNG~~V~~pS~~V~~gD~I~V~~ 140 (201)
T 3bbn_D 116 ILVNGRIVDIPSYRCKPQDTIMARD 140 (201)
T ss_dssp EEETTEECCCTTCBCCTTEEEEECS
T ss_pred EEeCCEEEeecceecCCCCEEEEcc
Confidence 5899998855799999999999863
No 82
>3ssb_I IMPI alpha, inducible metalloproteinase inhibitor protein; thermolysin fold - family I8 fold, metalloprotease thermoLys inhibitor; 1.80A {Galleria mellonella}
Probab=24.72 E-value=12 Score=26.59 Aligned_cols=15 Identities=27% Similarity=0.853 Sum_probs=12.5
Q ss_pred hhhhhhhhccccccC
Q 005297 126 NGFVRNALGSCVDYD 140 (703)
Q Consensus 126 ~~~~~~~~~~~~~~~ 140 (703)
.|||||.-|.||--+
T Consensus 11 ~G~vrn~~G~CV~~~ 25 (32)
T 3ssb_I 11 DGYARDVNGKCIPIK 25 (32)
T ss_dssp TTEEECTTSCEEEGG
T ss_pred CCcEECCCCCEECHH
Confidence 689999999998543
No 83
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=23.69 E-value=24 Score=32.21 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=19.8
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 005297 639 RPRLNHKAVGDPRCKLKMGDVVELT 663 (703)
Q Consensus 639 gakVNg~~v~~l~~~Lk~GDvVEIi 663 (703)
|..|||+.+. .+.|++||+|.|=
T Consensus 83 GT~vNg~~i~--~~~L~~GD~I~iG 105 (131)
T 3hx1_A 83 GLMINGKKVQ--EHIIQTGDEIVMG 105 (131)
T ss_dssp CEEETTEEES--EEECCTTCEEECS
T ss_pred ceEECCEEeE--eEECCCCCEEEEC
Confidence 6789999985 4999999999875
No 84
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A*
Probab=23.34 E-value=32 Score=38.45 Aligned_cols=31 Identities=26% Similarity=0.259 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHh----C------------CCH----HHHHHHHhhccc
Q 005297 223 YLLHCVETAMLLAAI----G------------ANS----TVVAAGLLHDTL 253 (703)
Q Consensus 223 YI~Hpl~VA~ILa~l----g------------~D~----~tIaAALLHDvV 253 (703)
=+.|.++|+.+...+ + .+. .+.+||||||+=
T Consensus 87 Rf~HSLgV~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~~v~~AaLlHDIG 137 (480)
T 3irh_A 87 RFSHSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVG 137 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSBHHHHGGGSBCGGGHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCccccccccCCCHHHHHHHHHHHHHhccC
Confidence 378999998766432 1 221 256999999974
No 85
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=23.17 E-value=43 Score=33.74 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHh----CCCH-HHHHHHHhhccccc
Q 005297 224 LLHCVETAMLLAAI----GANS-TVVAAGLLHDTLDD 255 (703)
Q Consensus 224 I~Hpl~VA~ILa~l----g~D~-~tIaAALLHDvVED 255 (703)
+.|.++|+.....+ +.|. .+.+||||||+...
T Consensus 27 ~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 27 VCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 68999998877654 4454 46789999999764
No 86
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=22.38 E-value=29 Score=30.79 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=18.9
Q ss_pred cccCCeecC-CCCCcCCCCCEEEEee
Q 005297 640 PRLNHKAVG-DPRCKLKMGDVVELTP 664 (703)
Q Consensus 640 akVNg~~v~-~l~~~Lk~GDvVEIit 664 (703)
+.+||+.+. +..++|++||+++|+.
T Consensus 66 ~~vng~~l~k~~~~~L~~GD~l~Ll~ 91 (102)
T 3kt9_A 66 TSIDSVVIGKDQEVKLQPGQVLHMVN 91 (102)
T ss_dssp CEETTEECCBTCEEEECTTCCEEEET
T ss_pred CeECCEEcCCCCeEEeCCCCEEEEcc
Confidence 456777662 3449999999999986
No 87
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=21.95 E-value=68 Score=34.84 Aligned_cols=184 Identities=15% Similarity=0.227 Sum_probs=104.1
Q ss_pred CCHHHHHHHHhhccccccC---CCHHHHHH---hhCHHHHHHHHHhh-cccccchhHhhccccchHHHHHHHHHHH---h
Q 005297 239 ANSTVVAAGLLHDTLDDAF---LSYDYIFR---TFGAGVADLVEGVS-KLSQLSKLARENNTASKTVEADRLHTMF---L 308 (703)
Q Consensus 239 ~D~~tIaAALLHDvVEDT~---vT~eeI~~---~FG~eVA~LV~gVT-Kl~~l~~~~r~~~~~~~~~qaE~lRkmL---L 308 (703)
.|+.+++|.-|..++.... ++.+|++. ...++--.||+.+. +.-.+.. -.+-|+++| +
T Consensus 179 vd~~tViaTHLsevi~~~a~ellg~qEvq~LLd~L~~~~p~LVeEl~p~~l~l~~------------i~~VLq~LL~E~V 246 (389)
T 3a5i_A 179 VEASTVVATHLNHLIGQFSAELFGRQEAQQLLDRVSQEMPKLTEDLVPGVVTLTT------------LHKVLQNLLAEKV 246 (389)
T ss_dssp EEHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHTTCHHHHHTTTTTTSCHHH------------HHHHHHHHHHTTC
T ss_pred EcHHHHHHHHHHHHHHHhHHHHhCHHHHHHHHHHHHHHChHHHHHhccCCcCHHH------------HHHHHHHHHhCCC
Confidence 3788888887777777543 55555443 34444455666653 3222221 234566655 2
Q ss_pred hcCCceeehhhhhhhHhhcccccCCCHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHhhhhhccCcchhhHHHHHHHhh
Q 005297 309 AMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC 388 (703)
Q Consensus 309 AmaD~RVvLIKLADRLhNMRtL~~~~~ekq~riA~ETl~IYaPLA~RLGi~~iK~ELEDLafryL~P~~y~~i~~~l~~~ 388 (703)
++.|.|.++=-|||.-..-+....+.+.-|.++++-.-.-|++-.+.|-+..+--++|++-. +.++..
T Consensus 247 sIRdlrtIlEaLae~a~~~kD~~~LtE~VR~aL~R~I~~~~~~~~~~L~vi~L~p~lE~~l~------------~si~qt 314 (389)
T 3a5i_A 247 PIRDMRTILETLAEHAPLQSDPHELTAVVRVALGRAITQQWFPGNEEVQVIGLDTALERLLL------------QALQGG 314 (389)
T ss_dssp CCCCHHHHHHHHHHHGGGCCCHHHHHHHHHHHTHHHHHHHHSCTTCCEECBCCCTTHHHHHH------------HHHHSS
T ss_pred CcccHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCHHHHHHHH------------HHhccc
Confidence 34488888888999887767666677777888887665555554455666666666666443 233222
Q ss_pred --hhhhhHHHHHHHHHHHHH---hcCCceecccccccChHHHHHHHhhcCC------CCCcccccEEEEEE
Q 005297 389 --FDEAMVTSAIEKLEQALK---DKNISFLVLCGRHKSLYSIHCKMLKKKL------TMDEIHDIYGLRLI 448 (703)
Q Consensus 389 --~~e~~i~~v~~~L~~~L~---~~gI~~~~V~gR~K~~ySI~~Km~rk~~------~~~~I~Dl~giRII 448 (703)
......+.+++.+++.++ ..|....-++ .-.+=...+|+.++.. ++.||.+=.-++++
T Consensus 315 ~GL~P~~~~~l~~~l~~~~~~~~~~g~~pVLL~--s~~iR~~lr~lle~~~p~l~VLS~~EI~~~~~I~~v 383 (389)
T 3a5i_A 315 GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLV--NHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMT 383 (389)
T ss_dssp SCCCTTHHHHHHHHHHHHHHHHHHHTCCCEEEE--CTTTHHHHHHHHTTTCTTCEEEETTTSCTTCCEECC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEEe--CHHHHHHHHHHHHHHCCCCEEEehHhcCCCCeeEEE
Confidence 112233344444444432 3344332233 2233356778777654 46888876666653
No 88
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Probab=21.43 E-value=36 Score=38.42 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHh-----------CCCH----HHHHHHHhhccc
Q 005297 223 YLLHCVETAMLLAAI-----------GANS----TVVAAGLLHDTL 253 (703)
Q Consensus 223 YI~Hpl~VA~ILa~l-----------g~D~----~tIaAALLHDvV 253 (703)
=+.|.++|+.+...+ +.+. .+.+||||||+=
T Consensus 66 Rf~HSLgV~~la~~i~~~l~~~~~~~~~~~~d~~~v~~AaLlHDiG 111 (528)
T 3u1n_A 66 RFEHSLGVGYLAGCLVHALGEKQPELQISERDVLCVQIAGLCHDLG 111 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcccCCCHHHHHHHHHHHHHhccC
Confidence 489999998766433 1222 256899999974
No 89
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=21.26 E-value=36 Score=33.67 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=20.9
Q ss_pred ccccCCeecCCCCCcCCCCCEEEEe
Q 005297 639 RPRLNHKAVGDPRCKLKMGDVVELT 663 (703)
Q Consensus 639 gakVNg~~v~~l~~~Lk~GDvVEIi 663 (703)
..+|||+.+...+++|+.||+|+|-
T Consensus 29 ~V~VNG~~v~~~~~~v~~gD~I~v~ 53 (234)
T 1ksk_A 29 RVTVDGEIVRNAAFKLLPEHDVAYD 53 (234)
T ss_dssp CEEETTEECCCTTCEECTTCCEEET
T ss_pred eEEECCEEeCCCCCCCCCCCEEEEe
Confidence 3689999884378999999999984
No 90
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=20.44 E-value=43 Score=33.55 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=21.8
Q ss_pred cccCCeecCCCCCcCCCCCEEEE
Q 005297 640 PRLNHKAVGDPRCKLKMGDVVEL 662 (703)
Q Consensus 640 akVNg~~v~~l~~~Lk~GDvVEI 662 (703)
.+||||.+.+..+++.-+|||+|
T Consensus 36 I~VDGKvr~d~~ypvG~mDVIsI 58 (213)
T 3kbg_A 36 VKVDGKTVREKKFAVGFMDVIEI 58 (213)
T ss_dssp EEETTEECCCTTCEECTTCEEEE
T ss_pred EEECCEEecccCCCccceeEEEe
Confidence 58999999889999999999999
No 91
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=20.43 E-value=42 Score=32.57 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=19.4
Q ss_pred cccCCeecCCCCCcCCCCCEEEEe
Q 005297 640 PRLNHKAVGDPRCKLKMGDVVELT 663 (703)
Q Consensus 640 akVNg~~v~~l~~~Lk~GDvVEIi 663 (703)
..|||+.|. -.+.|++||+|-+=
T Consensus 142 t~VNG~~I~-~~~~L~~GDrI~lG 164 (184)
T 4egx_A 142 TYVNGKKVT-EPSILRSGNRIIMG 164 (184)
T ss_dssp EEETTEECC-SCEECCTTCEEEET
T ss_pred EEEcCEEcc-ccEEcCCCCEEEEC
Confidence 569999994 67899999999764
No 92
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=20.37 E-value=32 Score=30.36 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=19.2
Q ss_pred ccccCCeecCCC--CCcCCCCCEEEEe
Q 005297 639 RPRLNHKAVGDP--RCKLKMGDVVELT 663 (703)
Q Consensus 639 gakVNg~~v~~l--~~~Lk~GDvVEIi 663 (703)
|..|||+.+. . .+.|++||+|.|=
T Consensus 77 GT~vng~~l~-~~~~~~L~~gd~i~lG 102 (118)
T 1uht_A 77 GTLLNSNALD-PETSVNLGDGDVIKLG 102 (118)
T ss_dssp CCEESSSBCC-TTCEEECCTTEEEEET
T ss_pred CeEECCEECC-CCCeEEcCCCCEEEEC
Confidence 5689999874 3 5789999999874
Done!