BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005299
(703 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 557 bits (1435), Expect = e-157, Method: Compositional matrix adjust.
Identities = 279/582 (47%), Positives = 396/582 (68%), Gaps = 21/582 (3%)
Query: 125 SNELPPVEELKVLPSDESFSWANENYNSWQRIIDVWSFVLSLQIRILFDNAKWAYLGGFS 184
S LPP + L ++ + W NY+ +R ID+W FVL+L + + KW+Y GG++
Sbjct: 15 SESLPP-QRRSPLEAEGRYRWNRGNYSITRRRIDIWGFVLTLLYQFWLNGKKWSYAGGYT 73
Query: 185 EDKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSP 244
E+K + RRR+ A W+RE++L LGPTFIK+GQL STRSDLFP E+V+EL+KLQD VPAFS
Sbjct: 74 EEKLQQRRRRQAKWIRENLLSLGPTFIKVGQLFSTRSDLFPAEYVEELSKLQDEVPAFSY 133
Query: 245 EKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFD 304
E+A I+ ELG PI +L+++F+ P+AAASLGQVH+A LH GE VVVKVQRPGLK+LF
Sbjct: 134 EQAAGIIEEELGKPIAKLYRSFDPVPLAAASLGQVHKAQLHTGEDVVVKVQRPGLKKLFT 193
Query: 305 IDLRNLKLIAEYFQRSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNI 364
IDL LK IA+YFQ +G RDW GIY+EC IL+QE DY+ EG++AD FRR+FR
Sbjct: 194 IDLAILKKIAQYFQNHPKWGR-GRDWNGIYEECCKILWQETDYLREGRSADTFRRNFRGE 252
Query: 365 KWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTG 424
WV+VP V+W YT+T++LTLEY+PG+KI+ AL+ G R ++A AYL Q+L G
Sbjct: 253 DWVKVPRVYWRYTSTQILTLEYLPGIKISHYDALEAAGLERKELAQLGARAYLFQLLNHG 312
Query: 425 FFHADPHPGNLAVDLDEA-LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLID 483
FFHADPHPGNLAV + LI+YDFGMMGEI T+ +L+D + V EK+A++++ L+
Sbjct: 313 FFHADPHPGNLAVSPEAGELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSLVA 372
Query: 484 LEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFV 543
L AL+ T DM +RRSVQF LDN + + P ++Q++ I +DL+ IA DQPFRFP+TFTFV
Sbjct: 373 LGALKETEDMGPIRRSVQFLLDNFMDK-PFEEQSITKISDDLYEIAYDQPFRFPATFTFV 431
Query: 544 IRAFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTM 603
+RAFSTLEG+G LDPDF+F+ VA P+A ++++ +++++ +QA +S +
Sbjct: 432 MRAFSTLEGVGKGLDPDFNFMAVAQPFALQIMNNSNGFNPAGNIMDELGRQAVQVGNSAL 491
Query: 604 SMPSRVQRIEEFVKQLEAGDLKLRVRVLESERAARKATILQMATMYTVCGGTLLNLGVTF 663
+P +RIE+ + +L+ GD+++RVR E++R R+ +QM T Y + L+ L T
Sbjct: 492 GLP---RRIEDSLDRLDRGDIRVRVRSTETDRLLRRMGTMQMGTNYVLFTCALV-LSATL 547
Query: 664 TGQGSQIIANGSFIGAGVFFTL-------LLRSMQRVKKLDK 698
+ N F+ A V + L R ++R+++ D+
Sbjct: 548 ------LFVNNYFMAAAVVLLMSLVPAFALWRLLKRLERQDR 583
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 201/533 (37%), Positives = 313/533 (58%), Gaps = 22/533 (4%)
Query: 139 SDESFSWANENYNSWQRIIDVWSFVLSLQIRILFDNAKWAYLGGFSEDKQKNRRRKTASW 198
+D SW+ + W+R + V L + +D + + RR + A W
Sbjct: 9 ADRPLSWSGLSRRPWRRQLAVTRVFLLFVFFLSWDR--------LTAPRSAQRRYRRAQW 60
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
L + +L LGPTFIK+GQ STR+D+ P E+++ +LQDRVP F +A I+ EL
Sbjct: 61 LVQQLLYLGPTFIKIGQSLSTRADIIPAEYIEAFTQLQDRVPPFDSRQAIAVIEQELHGA 120
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDL----RNLKLIA 314
I+++F+ FE P+A+ASLGQVHRA+L GE VVVKVQRPGL L ++D + L+L
Sbjct: 121 IDEIFQQFEVTPLASASLGQVHRAVLPTGEAVVVKVQRPGLDSLLNLDFELLHQTLRLAK 180
Query: 315 EYFQRSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFW 374
+ + IY E ++L+ EIDYI+EGKNA+RFR++F + VRVP ++W
Sbjct: 181 RWLPGFRRLAQ-KYEIEAIYQEFFSLLFLEIDYIHEGKNAERFRQNFADYPRVRVPEIYW 239
Query: 375 DYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGN 434
YT VLTLEY+PG+K+++ +AL+ G N + I AYL Q+L GFF +DPHPGN
Sbjct: 240 QYTTRMVLTLEYLPGIKVDDRQALETAGINLDLVIQTGICAYLKQLLVDGFFQSDPHPGN 299
Query: 435 LAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMS 494
+AVD LI+YDFG M E+K +++++ F+AV KD +V++ LI + ++P GD+S
Sbjct: 300 MAVDSQGDLIFYDFGTMAEVKIIAKDQMVQTFFAVLRKDTNQVLEALIYMGLVEPKGDLS 359
Query: 495 SVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIG 554
++R + F LDN P + +GE+++A+ Q QPFR P TF++++ STL+GI
Sbjct: 360 PIKRIINFLLDN-FRDKPIDIKAFDQVGEEVYAMFQQQPFRLPPQMTFILKSISTLDGIA 418
Query: 555 NILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMSMPSRVQR-IE 613
LDP ++ + + P+ Q + + ++ L++Q+++ A D ++ PSR Q+ ++
Sbjct: 419 RALDPRYNLIAASQPFIQSITVAQPKRSLAMALLQQVKQFALD----QLNRPSRNQQFLQ 474
Query: 614 EFVKQLEAGDLKLRVRVLESERAARKATILQMATMYTVC--GGTLLNLGVTFT 664
E +LE G+L+ R E +R RK L + ++ C G TLL+ V +
Sbjct: 475 ELAAKLERGELQFATRSPEGDRLLRKIH-LALKSLIFACLTGFTLLSATVLLS 526
>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1919 PE=3 SV=1
Length = 566
Score = 279 bits (714), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 163/443 (36%), Positives = 249/443 (56%), Gaps = 12/443 (2%)
Query: 153 WQRIIDVWSFVLSLQIRILFDNAKWAYLGGFSEDKQKNRRRKTASWLRESVLQLGPTFIK 212
W+ + VWSF L +L+D +W + + +R+ A LRE + +LGPTFIK
Sbjct: 37 WRALEVVWSFGFFLTC-LLWD--QWT-------GQVEYYKRQRAEDLRELLTKLGPTFIK 86
Query: 213 LGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAPIEQLFKTFEDRPIA 272
+GQ STR DL R+F++EL KLQD++P F + A ++ +LG +++ ++ P+A
Sbjct: 87 VGQALSTRPDLVRRDFLEELIKLQDQLPPFDNDLAFQLMEEQLGMKVDEAYREISAHPVA 146
Query: 273 AASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQRSETFGGPTRDWIG 332
AASLGQV+RA+L +GE+V VKVQRP L+ +DL ++L A+ F R D
Sbjct: 147 AASLGQVYRAMLFSGEEVAVKVQRPNLRPRLSLDLYLMRLGAQKFGRFLPLNL-GHDLTL 205
Query: 333 IYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKI 392
I DE L++EIDY+NEG+NA++F +F V+VP ++W Y+ KVLTLE++ G K+
Sbjct: 206 IVDEFGIKLFEEIDYLNEGRNAEKFAENFHGDAEVKVPCIYWQYSNQKVLTLEWIQGFKL 265
Query: 393 NELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMG 452
+ + G + S I + + L Q+L+ GFFHADPHPGNL LD + Y DFGMM
Sbjct: 266 TDTDKIRAAGLDPSDIIRIGVTSGLRQLLEHGFFHADPHPGNLFATLDGRMAYIDFGMMD 325
Query: 453 EIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSP 512
+++ T+E + + KD + + I L L P D++ + +++ + + QS
Sbjct: 326 QLEPGTKETIASSIVQLINKDYLALTEDFIALGFLAPNTDITPIIPALENVFGSAIGQSV 385
Query: 513 DQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSFVKVAAPYAQ 572
Q I +D + D PFR P+ F +IR+ T EG+ LDP+F V+VA PY
Sbjct: 386 -QDFNFKTITDDFSELMYDYPFRVPAKFALIIRSLVTQEGLALSLDPNFKIVEVAYPYVA 444
Query: 573 ELLDLKQQQQSGTQLVEQIRKQA 595
L + Q QL++ + K
Sbjct: 445 RRLLTGESPQLRRQLIDVLFKNG 467
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 275 bits (702), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 158/439 (35%), Positives = 243/439 (55%), Gaps = 13/439 (2%)
Query: 163 VLSLQIRILFDNAK------WAYLGGFSEDKQKNRRRKTASWLRESVLQLGPTFIKLGQL 216
VL I ILF + W L G K R A LRE + LGPT+IK+GQ
Sbjct: 69 VLGRLINILFPLLRFILGIWWEKLRG----KDPTVSRAKAIQLRELLTNLGPTYIKVGQA 124
Query: 217 SSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAPIEQLFKTFEDRPIAAASL 276
STR DL P F+DEL LQD++P+F E A FI+ ELGAP E+++ PIAAASL
Sbjct: 125 LSTRPDLVPPVFLDELTTLQDQLPSFPNEVAYRFIEEELGAPAEEIYAELSPEPIAAASL 184
Query: 277 GQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQRSETFGGPTRDWIGIYDE 336
GQV++ L GE V VKVQRP L R +D+ ++ ++ + +RS D + I DE
Sbjct: 185 GQVYKGKLKTGEAVAVKVQRPDLVRRITLDIYIMRSLSLWARRS--VKRLRSDLVAITDE 242
Query: 337 CATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELK 396
A+ +++E++Y E N ++F + + ++ + VP ++W YT +VLT+E+V G+K+ +K
Sbjct: 243 LASRVFEEMNYYQEAINGEKFAQLYGSLPEIYVPSIYWQYTGRRVLTMEWVEGIKLTNIK 302
Query: 397 ALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKS 456
A+ QG + + + ++ L Q+L+ GFFHADPHPGNL D L Y DFGMM I+
Sbjct: 303 AIQAQGIDATHLVEVGVQCSLRQLLEHGFFHADPHPGNLLAMADGRLAYLDFGMMSTIQP 362
Query: 457 FTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQ 516
+ R L++ + +D + + + L+ L+P D+ + ++ N L S +
Sbjct: 363 YQRYGLIEAVVHLVNRDFDSLAKDYVKLDFLKPDTDLKPIIPALGQVFGNALGAS-VAEL 421
Query: 517 TLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSFVKVAAPYAQELLD 576
+I + + A+ + PFR P+ + +IR+ TLEGI +DP+F + A PY + L
Sbjct: 422 NFKSITDQMSAMMYEFPFRVPAYYALIIRSMVTLEGIAIGIDPNFKVLSKAYPYIAKRLL 481
Query: 577 LKQQQQSGTQLVEQIRKQA 595
Q ++ T L E + K+
Sbjct: 482 TDQSEELRTSLKELLFKEG 500
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 252 bits (643), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 148/406 (36%), Positives = 232/406 (57%), Gaps = 13/406 (3%)
Query: 180 LGGFS-----EDKQKN---RRRKTASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDE 231
LGGF+ + KQ N +K A LR +LGPTF+KLGQ STR DL P ++++E
Sbjct: 123 LGGFALKLGIDQKQGNLEKNMKKRAIELRRIFTRLGPTFVKLGQGLSTRPDLCPPDYLEE 182
Query: 232 LAKLQDRVPAFSPEKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAIL-HNGEKV 290
LA+LQD +P F +A I+ EL +E +F + PIAAASLGQV++A L ++G+ V
Sbjct: 183 LAELQDALPTFPDAEAFACIERELDLSLETIFSSVSPEPIAAASLGQVYKAQLRYSGQVV 242
Query: 291 VVKVQRPGLKRLFDIDLRNLKLIAEYFQRSETFGGPTRDWIGIYDECATILYQEIDYINE 350
VKVQRPG++ +D ++ + + + F T D + + DE A +YQE++Y+ E
Sbjct: 243 AVKVQRPGIEEAIGLDFYLIRGVGKLINKYVDF--ITTDVLTLIDEFACRVYQELNYVQE 300
Query: 351 GKNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAS 410
+NA RF++ + + V VP +FWDYT+ KVLT+E+V G K+NE A++ QG + +
Sbjct: 301 AQNARRFKKLYADKADVLVPDIFWDYTSRKVLTMEWVEGTKLNEQLAIESQGLKVLDLVN 360
Query: 411 RAIEAYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVY 470
I+ L Q+L+ GFFHADPHPGNL D L + DFGMM E R ++ +
Sbjct: 361 TGIQCSLRQLLEYGFFHADPHPGNLLATPDGKLAFLDFGMMSETPEEARFAIIGHVVHLV 420
Query: 471 EKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQ 530
+D + + + L+ L P D++ + +++ F D+ L+ + + + + L A+
Sbjct: 421 NRDYEAMARDYYALKFLSPDVDVTPIIPALRDFFDDALNYTV-SELNFKTLVDGLGAVFY 479
Query: 531 DQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSFVKVAAPY-AQELL 575
PF P + ++R+ + LEG+ DP+F + + PY A+ LL
Sbjct: 480 QYPFNVPPYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLL 525
>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810,
chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1
SV=1
Length = 692
Score = 234 bits (598), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/397 (35%), Positives = 225/397 (56%), Gaps = 21/397 (5%)
Query: 196 ASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNEL 255
A+ LR+ +++LGP ++K+ Q S+R DL P ++DEL+ LQD++ FS E A + I++EL
Sbjct: 120 AAELRKLLVELGPAYVKIAQAVSSRPDLIPPIYLDELSLLQDQITPFSTEVAFNMIEDEL 179
Query: 256 GAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVV-VKVQRPGLKRLFDIDLRNLKLIA 314
G PI++LF P+AAASLGQV++A L KVV VKVQRPG++ +D L+ IA
Sbjct: 180 GLPIDELFSEISPEPVAAASLGQVYQARLRRSGKVVAVKVQRPGVRAAIALDTLILRYIA 239
Query: 315 EYFQRSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFW 374
+++ F D + DE AT L++E+DY+NE +N +FR+ + IK V VP ++
Sbjct: 240 GLIKKAGRFNS---DLEAVVDEWATSLFKEMDYLNEAQNGIKFRKLYGGIKDVLVPKMYT 296
Query: 375 DYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGN 434
+Y+ +KVL +E+V G K+NE+ L L + Q+L+ GF+HADPHPGN
Sbjct: 297 EYSTSKVLVMEWVEGQKLNEVNDLYL--------VEVGVYCSFNQLLEYGFYHADPHPGN 348
Query: 435 LAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMS 494
D L Y DFGMMG+ + R+ ++ + +D K + + + L L PT + S
Sbjct: 349 FLRTYDGQLAYLDFGMMGDFRPELRDGFMEACLHLVNRDFKALAKDFVTLGLLPPTAEKS 408
Query: 495 SVRRSVQFFLDNLLSQSPDQ---QQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLE 551
+V +++ + +S+ L +G+ ++ FR P F+ VIR+ + LE
Sbjct: 409 AVTKALTDVFQDAISRGVRNISFGDLLGDLGKTMYRFK----FRIPPYFSLVIRSLAVLE 464
Query: 552 GIGNILDPDFSFVKVAAPY-AQELL-DLKQQQQSGTQ 586
GI + P++ + P+ A+++L D Q +S Q
Sbjct: 465 GIAIGISPNYKVLGSTYPWIARKILTDSSPQLKSSLQ 501
>sp|Q46189|YHG1_CLOPA Uncharacterized protein in hydrogenase 1 5'region (Fragment)
OS=Clostridium pasteurianum PE=3 SV=1
Length = 530
Score = 232 bits (592), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 130/398 (32%), Positives = 217/398 (54%), Gaps = 7/398 (1%)
Query: 177 WAYLG-GFSEDKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKL 235
AY G GF D + N +K+ LR++ +LGPTFIK+GQ+ STR DL P ++ EL+KL
Sbjct: 13 LAYYGFGFIVDSKLNGNKKSPENLRKAFEELGPTFIKIGQILSTRPDLLPLPYIKELSKL 72
Query: 236 QDRVPAFSPEKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQ 295
Q+ VP + + EL + I+ F F+ PI +AS+ QVH AIL +G V+VK+Q
Sbjct: 73 QNNVPPENFIDIENLFFEELSSTIDNTFLYFDKTPIGSASIAQVHDAILKDGRFVIVKIQ 132
Query: 296 RPGLKRLFDIDLRNLKLIAEYFQRSET-FGGPTRDWIGIYDECATILYQEIDYINEGKNA 354
RPG+ + D L +I + ++T F D DE QE+D+INE N
Sbjct: 133 RPGIAEMMKTD---LSIIKKLLNITKTKFTDALIDPKEAIDELFISTTQELDFINEINNI 189
Query: 355 DRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIE 414
+F++ ++K+VR P K++ +E + G+KI+ LK L +GY+ ++ +
Sbjct: 190 KKFKKLNEDVKFVRTPYTIDKLCTEKIIVMEKIVGIKIDNLKKLLNEGYDLEELGKKLTL 249
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
+Y Q+ + GFFH DPHPGNL + + + Y DFG+MG I + L D AV D
Sbjct: 250 SYFKQVFQDGFFHGDPHPGNLLIR-ENHICYIDFGIMGTISKSLKISLNDAILAVAYHDV 308
Query: 475 KKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPF 534
K+I ++ + + + +S+ S+++ DN +S S + ++ + +++F I+++
Sbjct: 309 NKMISVIMSIGVKKGYVNRNSLYESIEYLFDNYISVSL-KNIKISVMLQEIFQISKNNNI 367
Query: 535 RFPSTFTFVIRAFSTLEGIGNILDPDFSFVKVAAPYAQ 572
+ P T ++++ +EG+ + P+ S V V PY +
Sbjct: 368 KLPKELTMLLKSTLMIEGVIARISPELSIVDVLIPYVK 405
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 226 bits (576), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 135/425 (31%), Positives = 219/425 (51%), Gaps = 5/425 (1%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP FIK GQ+ STR DL P ++ ELAKLQD+VP F +R I+ LG
Sbjct: 54 LRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSLGQS 113
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQ 318
IE+L+ FE PIA+AS+ QVH+A LH+GE+V VKV RP L L + DL ++ A + +
Sbjct: 114 IEKLYAEFETEPIASASIAQVHKARLHSGERVAVKVLRPNLLPLIEQDLSLMRFGAAWVE 173
Query: 319 RSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTA 378
R + G + + + E L+ E+D + E NA + R+F N + VP VF+DY
Sbjct: 174 RLFSDGRRLKP-LEVVAEFDKYLHDELDLMREAANAGQLGRNFHNSNMLIVPKVFYDYCT 232
Query: 379 TKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVD 438
+ VLT+E++ G + ++ L G + ++A +E + Q+ + GFFHAD HPGN+ V
Sbjct: 233 SDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNILVA 292
Query: 439 LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRR 498
D I DFG++G + + + L F A + +D ++V I+ + +
Sbjct: 293 ADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEELEA 352
Query: 499 SVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILD 558
+V+ + + ++ P Q + + LF +++ + + +EG+G LD
Sbjct: 353 AVRAVCEPVFNK-PISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQLD 411
Query: 559 PDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMSMPSRVQRIEEFVKQ 618
PD K A P+ L+ Q L ++ +A D S+P ++ + + +Q
Sbjct: 412 PDLDLWKTAKPF---LVKWMNGQVGPKALWRNLKNEAPDWAQIIPSLPRKISALIDENRQ 468
Query: 619 LEAGD 623
E D
Sbjct: 469 QEMRD 473
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/427 (31%), Positives = 222/427 (51%), Gaps = 9/427 (2%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP FIK GQ+ STR DL P ++ ELAKLQD+VP F +R I+ LG
Sbjct: 54 LRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSLGQS 113
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQ 318
IE+L+ FE PIA+AS+ QVH+A LH+GE+V VKV RP L + + DL ++ A + +
Sbjct: 114 IEKLYAEFETEPIASASIAQVHKARLHSGEQVAVKVLRPNLLPVIEQDLSLMRFGAGWVE 173
Query: 319 RSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDY 376
R G R+ + +D+ L+ E+D + E NA + R+F+N + VP VF+DY
Sbjct: 174 RLFADGKRLKPREVVAEFDK---YLHDELDLMREAANASQLGRNFQNSDMLIVPKVFYDY 230
Query: 377 TATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLA 436
+ VLT+E++ G ++++ L G + ++A +E + Q+ + GFFHAD HPGN+
Sbjct: 231 CTSDVLTIEWMDGTPVSDIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNIL 290
Query: 437 VDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSV 496
V D I DFG++G + + + L F A + +D ++V I+ + +
Sbjct: 291 VAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEEL 350
Query: 497 RRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNI 556
+V+ + + ++ P Q + + LF +++ + + +EG+G
Sbjct: 351 EAAVRAVCEPVFNK-PISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQ 409
Query: 557 LDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMSMPSRVQRIEEFV 616
LDPD K A P+ L+ Q L ++ +A D S+P ++ + +
Sbjct: 410 LDPDLDLWKTAKPF---LVKWMNGQVGPKALWRNLKNEAPDWAQIIPSLPRKISALIDEN 466
Query: 617 KQLEAGD 623
+Q E D
Sbjct: 467 RQQEMRD 473
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 138/451 (30%), Positives = 223/451 (49%), Gaps = 17/451 (3%)
Query: 164 LSLQIRILFDNAKWAYLGGFSEDKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSDL 223
L ++I F A W F + K R LR ++ +LGP F+K GQ+ STR DL
Sbjct: 28 LPTPLKIFFLLAPWHL---FPQPKLSRGDR-----LRLALEELGPVFVKFGQILSTRRDL 79
Query: 224 FPREFVDELAKLQDRVPAFSPEKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAI 283
P + + L +LQDRVP F E+AR I+ LGAP+ +LF F P+A+AS+ QVH A
Sbjct: 80 LPDDMAESLKQLQDRVPPFPSEQARGIIEKSLGAPVSELFAEFSPDPMASASVAQVHAAT 139
Query: 284 LHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQRSETFGGPTRDWIGIYDECATILYQ 343
L NG+KVVVKV RPG++++ DL + L+A ++ + G + D +TI +
Sbjct: 140 LPNGQKVVVKVLRPGIEKVIRQDLGLMYLMAGLLEKYWSEGKRLHPVEVVADYDSTI-HD 198
Query: 344 EIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGY 403
E+D E NA + RR+F N + +P + WDYT VL +E + G+ I ++ AL+ G
Sbjct: 199 ELDLQREAANASQLRRNFENSPLIYIPFIDWDYTRKSVLVMERIHGIPIADVPALEKAGV 258
Query: 404 NRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTR 459
N +A + +E + Q+ + FFHAD HPGN+ VD+ D I DFG++G + +
Sbjct: 259 NMRVLAEKGVEIFFTQVFRDSFFHADMHPGNIFVDVSNPADPKYIAIDFGIVGTLAPDDQ 318
Query: 460 ERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLA 519
L A + +D ++V Q I + P ++ +++ + + + P + +
Sbjct: 319 SYLARNLLAFFRRDYRQVAQLHIQSGWVPPETRVNEFEAAIRTVCEPIF-ERPLKDISFG 377
Query: 520 AIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQ 579
LF A+ + + +EG+G L PD A P+ L D +
Sbjct: 378 HFLLRLFQTARRFNMEVQPQLVLLQKTLLNVEGLGRQLYPDLDLWSTAQPF---LEDWMR 434
Query: 580 QQQSGTQLVEQIRKQADDARSSTMSMPSRVQ 610
++ + L++ ++ + MP V
Sbjct: 435 KRIGPSGLIKSLQNHLPSWLEQSPEMPQLVH 465
>sp|Q9PCE8|UBIB_XYLFA Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain 9a5c) GN=ubiB PE=3 SV=1
Length = 552
Score = 214 bits (546), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 151/513 (29%), Positives = 253/513 (49%), Gaps = 30/513 (5%)
Query: 184 SEDKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFS 243
+E +++R R+ LR ++ +LGP F+K GQ+ STR DL P++ DEL LQDRV F
Sbjct: 44 AEIVEQSRGRR----LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFE 99
Query: 244 PEKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLF 303
+ AR I+ LG +E F F+ P+A+AS+ QVH A LH+G +VVVKV RP ++
Sbjct: 100 GQTARIIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDGREVVVKVLRPDIEHQI 159
Query: 304 DIDLRNLKLIAEYFQRSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRN 363
D+ LK +A + + R I E T L E+D EG NA RR +
Sbjct: 160 SDDIALLKSLATLVEHTHPNADKIRP-CEIVAEIETTLAAELDLQREGANASVLRRFWEA 218
Query: 364 IKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKT 423
+ VP V W +TA +VLTLE + G+ +++ LD G +R ++S+ I + Q+ +
Sbjct: 219 SDDIYVPEVIWSHTAEQVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRD 278
Query: 424 GFFHADPHPGNLAVDLDEA------LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKV 477
FFHAD H GN+ VD D A I DFG+MG++ + L + F A++ KD +++
Sbjct: 279 NFFHADAHSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENFMAIFHKDYRRI 338
Query: 478 IQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFP 537
+ ++ + P + + + + + ++ P Q +LA + LF +A+
Sbjct: 339 AELHVEAGWIPPHVRIEELEAAARSVCEPYFTR-PLSQISLAEVLMKLFHVARRYQLTLQ 397
Query: 538 STFTFVIRAFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADD 597
+ + +EG+G LDP+ VA P + +L + + S ++++ K+ +
Sbjct: 398 PQLILLQKTLLNIEGVGRQLDPELDIWVVARPVLERIL---RARYSPRHALKELNKRLPE 454
Query: 598 ARSSTMSMPSRVQRIEEFVKQLEA---GDLKL-RVRVLESERAARKATILQMATMYTVCG 653
+ P + V+Q+E+ D+ L ++R L A LQ + + G
Sbjct: 455 IMTHAPDTPRLIH--TWLVQQVESRKQNDVYLQQIRAL-----AMTLQGLQRRVVNAIVG 507
Query: 654 GTLLNLGVTFTGQGSQIIANGSFIGAGVFFTLL 686
LL G + +G ++GA ++L+
Sbjct: 508 SGLLVAAAVLYG----LHPDGLYLGAIPVWSLI 536
>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1
Length = 525
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 145/474 (30%), Positives = 240/474 (50%), Gaps = 32/474 (6%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP F+K GQ+ STR DL P + DELAKLQD+VP F A ++N LGAP
Sbjct: 52 LRLALESLGPIFVKFGQVLSTRRDLLPVDIADELAKLQDQVPPFESAVAIRLVENALGAP 111
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL----HNGEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
++ LF FE P+A+AS+ QVH A + H G+ V VKV RP + + D DL L+ IA
Sbjct: 112 VDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ +R G R+ + +D+ L+ E+D + E N + RR+F + + VP +
Sbjct: 172 VWAERLWADGKRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
+W++ VL +E + GV I++++ L G + ++A +E + Q+ + GFFHAD HP
Sbjct: 229 YWEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQ 488
GN+ V LD A I DFG++G + F + L F A +++D +V ++ +
Sbjct: 289 GNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 489 PTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVI 544
PT + S++R + + D L + +L + LF+ ++ +
Sbjct: 349 PTTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQ 403
Query: 545 RAFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQ-LVEQIRKQADDARSSTM 603
+ +EG+G LDP+ K A PY + ++ +Q G + E+++ +A +
Sbjct: 404 KTMLNVEGLGRSLDPELDLWKTAKPYLERWMN----EQIGLRGWYERLKIEAPQWSKTLP 459
Query: 604 SMPSRVQR--IEEFVKQLEAGDLKLRVRVLESERAARKATILQMATMYTVCGGT 655
+P + E + A D +R +LE +R R +LQ ++ V G
Sbjct: 460 QLPRLIHHALAERHDNKRGANDDMIRQILLEQKRTNR---LLQGLLLFGVAVGV 510
>sp|Q87CN1|UBIB_XYLFT Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=ubiB PE=3 SV=1
Length = 552
Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 131/401 (32%), Positives = 207/401 (51%), Gaps = 18/401 (4%)
Query: 184 SEDKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFS 243
+E +++R R+ LR ++ +LGP F+K GQ+ STR DL P++ DEL LQDRV F
Sbjct: 44 AEIVEQSRGRR----LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFE 99
Query: 244 PEKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLF 303
+ AR I+ LG +E F F+ P+A+AS+ QVH A LH+ VVVKV RP ++
Sbjct: 100 GQTARSIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRRAVVVKVLRPDIEHQI 159
Query: 304 DIDLRNLKLIAEYFQRSETFGGPTRDWI---GIYDECATILYQEIDYINEGKNADRFRRD 360
D+ LK +A + + P D I I E T L E+D EG NA RR
Sbjct: 160 SDDIALLKSLATLVEHTH----PNADKIRPREIVAEIETTLAAELDLQREGANASVLRRF 215
Query: 361 FRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQI 420
+ + VP V W +TA +VLTLE + G+ +++ LD G +R ++S+ I + Q+
Sbjct: 216 WEASDDIYVPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQV 275
Query: 421 LKTGFFHADPHPGNLAVDLDEA------LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
+ FFHAD H GN+ VD D A I DFG+MG++ + L + F A++ KD
Sbjct: 276 FRDNFFHADAHSGNIWVDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDY 335
Query: 475 KKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPF 534
+++ + ++ + P + + + + + ++ P Q +LA + LF +A+
Sbjct: 336 RRIAELHVEAGWIPPHVRIEELEAAARSVCEPYFTR-PLSQISLAEVMMKLFHVARRYQL 394
Query: 535 RFPSTFTFVIRAFSTLEGIGNILDPDFSFVKVAAPYAQELL 575
+ + +EG+G LDP+ VA P + +L
Sbjct: 395 TLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARPVLERIL 435
>sp|B2I583|UBIB_XYLF2 Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M23) GN=ubiB PE=3 SV=1
Length = 552
Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 131/401 (32%), Positives = 207/401 (51%), Gaps = 18/401 (4%)
Query: 184 SEDKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFS 243
+E +++R R+ LR ++ +LGP F+K GQ+ STR DL P++ DEL LQDRV F
Sbjct: 44 AEIVEQSRGRR----LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFE 99
Query: 244 PEKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLF 303
+ AR I+ LG +E F F+ P+A+AS+ QVH A LH+ VVVKV RP ++
Sbjct: 100 GQTARSIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRRAVVVKVLRPDIEHQI 159
Query: 304 DIDLRNLKLIAEYFQRSETFGGPTRDWI---GIYDECATILYQEIDYINEGKNADRFRRD 360
D+ LK +A + + P D I I E T L E+D EG NA RR
Sbjct: 160 SDDIALLKSLATLVEHTH----PNADKIRPREIVAEIETTLAAELDLQREGANASVLRRF 215
Query: 361 FRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQI 420
+ + VP V W +TA +VLTLE + G+ +++ LD G +R ++S+ I + Q+
Sbjct: 216 WEASDDIYVPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQV 275
Query: 421 LKTGFFHADPHPGNLAVDLDEA------LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
+ FFHAD H GN+ VD D A I DFG+MG++ + L + F A++ KD
Sbjct: 276 FRDNFFHADAHSGNIWVDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDY 335
Query: 475 KKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPF 534
+++ + ++ + P + + + + + ++ P Q +LA + LF +A+
Sbjct: 336 RRIAELHVEAGWIPPHVRIEELEAAARSVCEPYFTR-PLSQISLAEVMMKLFHVARRYQL 394
Query: 535 RFPSTFTFVIRAFSTLEGIGNILDPDFSFVKVAAPYAQELL 575
+ + +EG+G LDP+ VA P + +L
Sbjct: 395 TLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARPVLERIL 435
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 210 bits (534), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 142/476 (29%), Positives = 233/476 (48%), Gaps = 49/476 (10%)
Query: 170 ILFDNAKWAYLGGFSEDKQKNRRRKTASW---------------LRESVLQLGPTFIKLG 214
IL+ L GF K+RR + W LR ++ QLGP F+K G
Sbjct: 14 ILYHGLDQLALSGF-----KSRRIRALVWVLTLGRRQTRPRGERLRLALEQLGPIFVKFG 68
Query: 215 QLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAPIEQLFKTFEDRPIAAA 274
Q+ STR DL P + DELAKLQDRVP F P+ A ++ LG P+ LF F+ P+A+A
Sbjct: 69 QVLSTRRDLLPPDVADELAKLQDRVPPFDPKIAAAIVERSLGKPLSALFHRFDHHPVASA 128
Query: 275 SLGQVHRAILH----NGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQRSETFGG--PTR 328
S+ QVH A L +G +V VKV RPG+ + D DL ++ +A + ++ G R
Sbjct: 129 SIAQVHFATLRGGPDDGREVAVKVLRPGMLPVIDSDLALMRDVATWMEKLWADGKRLKPR 188
Query: 329 DWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVP 388
+ + +D+ L+ E+D + E NA + RR+F + + VP VFWD+ ++V +E +
Sbjct: 189 EVVAEFDK---YLHDELDLMREAANASQLRRNFAKSELLLVPEVFWDWCTSEVFVMERMH 245
Query: 389 GVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVDL-DEAL---I 444
GV+++ L G + ++A +E + Q+ + GFFHAD HPGN+ V + E+L I
Sbjct: 246 GVRVSHADELRAAGVDTHKLARDGVEIFFTQVFRDGFFHADMHPGNILVSVAPESLGRYI 305
Query: 445 YYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDM------SSVRR 498
DFG++G + F + L F A +++D +V L+ +E+ + ++R
Sbjct: 306 ALDFGIVGALSEFDKNYLAQNFLAFFQRDYHRVA--LLHVESGWAPEETRVEELEGAIRA 363
Query: 499 SVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILD 558
+ + D P + +L + LF ++ + + +EG+G LD
Sbjct: 364 CCEPYFDR-----PLGEISLGLVLMRLFQTSRRFNVEVQPQLVLLQKTLLNVEGLGRQLD 418
Query: 559 PDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMSMPSRVQRIEE 614
PD K A P+ + + +Q LV++++ +A + P +I E
Sbjct: 419 PDLDLWKTAKPFLERWM---HEQIGWRGLVDRLKIEAPQWANMLPDFPRLAHQILE 471
>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
xenovorans (strain LB400) GN=ubiB PE=3 SV=1
Length = 525
Score = 209 bits (532), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 145/482 (30%), Positives = 240/482 (49%), Gaps = 32/482 (6%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP F+K GQ+ STR DL P + +ELAKLQD+VP F A ++ LGAP
Sbjct: 52 LRLALESLGPIFVKFGQVLSTRRDLLPVDIANELAKLQDQVPPFDSAVAIGLVEKSLGAP 111
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL----HNGEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
++ LF FE P+A+AS+ QVH A + H G+ V VKV RP + + D DL L+ IA
Sbjct: 112 VDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ +R G R+ + +D+ L+ E+D + E N + RR+F + + VP +
Sbjct: 172 VWAERLWADGKRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
+W++ VL +E + GV I++++ L G + ++A +E + Q+ + GFFHAD HP
Sbjct: 229 YWEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQ 488
GN+ V LD A I DFG++G + F + L F A +++D +V ++ +
Sbjct: 289 GNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 489 PTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVI 544
PT + S++R + + D L + +L + LF+ ++ +
Sbjct: 349 PTTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQ 403
Query: 545 RAFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQ-LVEQIRKQADDARSSTM 603
+ +EG+G LDP+ K A PY + ++ +Q G + E+++ +A +
Sbjct: 404 KTMLNVEGLGRSLDPELDLWKTAKPYLERWMN----EQIGLRGWYERLKIEAPQWSKTLP 459
Query: 604 SMPSRVQR--IEEFVKQLEAGDLKLRVRVLESERAARKATILQMATMYTVCGGTLLNLGV 661
+P + E A D +R +LE +R R +LQ ++ V G L
Sbjct: 460 QLPRLIHHALAERHDHTRGANDEMIRQILLEQKRTNR---LLQGLLLFGVAVGVGAALAR 516
Query: 662 TF 663
F
Sbjct: 517 VF 518
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 209 bits (532), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 142/474 (29%), Positives = 235/474 (49%), Gaps = 31/474 (6%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP F+K GQ+ STR DL + ELAKLQD+VP F A I+ LGAP
Sbjct: 52 LRLALESLGPIFVKFGQVLSTRRDLLRPDIATELAKLQDQVPPFDSAVAIAIIEKSLGAP 111
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL----HNGEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
++ +F FE P+A+AS+ QVH A L H G++V VKV RP + + D DL L+ IA
Sbjct: 112 VDTIFDDFERVPVASASIAQVHFATLKIGQHAGKQVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ +R G R+ + +D+ L+ E+D + E N + RR+F + + VP +
Sbjct: 172 VWAERLWADGKRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
+W+Y VL +E + GV I+++ L + G + ++A +E + Q+ + GFFHAD HP
Sbjct: 229 YWEYCTANVLVMERMVGVPISQVDTLRVAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQ 488
GN+ V LD A I DFG++G + F + L F A +++D +V ++ +
Sbjct: 289 GNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 489 PTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVI 544
T + S++R + + D L + +L + LF+ ++ +
Sbjct: 349 ATTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQ 403
Query: 545 RAFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMS 604
+ +EG+G LDP+ K A PY + ++ +Q E+++ +A +
Sbjct: 404 KTMLNVEGLGRSLDPELDLWKTAKPYLERWMN---EQIGAKGWYERLKIEAPQWSKTLPQ 460
Query: 605 MPSRVQRI---EEFVKQLEAGDLKLRVRVLESERAARKATILQMATMYTVCGGT 655
+P + + +Q D +R +LE +R R +LQ M+ V G
Sbjct: 461 LPRLIHHVLAQRHDAQQRGINDETIRQILLEQKRTNR---LLQGLLMFGVAVGV 511
>sp|B0RLZ0|UBIB_XANCB Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain B100) GN=ubiB PE=3
SV=1
Length = 557
Score = 207 bits (528), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 147/494 (29%), Positives = 240/494 (48%), Gaps = 29/494 (5%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ +LGP F+K GQ+ STR DL P + +EL LQDRV F E AR ++ LG P
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVKPFDGEAARLIVERALGLP 114
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL---HNG--EKVVVKVQRPGLKRLFDIDLRNLKLI 313
+ F F+ P+A+AS+ QVH A L NG +VVVKV RP ++R D D+ L +
Sbjct: 115 VSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLHSL 174
Query: 314 AEYFQRSETFGGPTRDWIGIYDECATI---LYQEIDYINEGKNADRFRRDFRNIKWVRVP 370
A +R+ P D I + A I L E+D EG NA RR + + VP
Sbjct: 175 ATLVERTH----PRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEGSDDLYVP 230
Query: 371 LVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADP 430
V W +TA + LTLE V G+ +++ LD G +R +A++ + + Q+ + FFHAD
Sbjct: 231 EVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADA 290
Query: 431 HPGNLAVD------LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDL 484
H GN+ VD L+ I DFG+MG++ + L + F A++ KD +++ + ++
Sbjct: 291 HAGNIWVDSDPERCLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEA 350
Query: 485 EALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVI 544
+ + + + + + ++ P + +LA + LF +AQ +
Sbjct: 351 GWMPSNVRIDELEAAARSVCEPYFTR-PLSEISLAEVLIKLFRVAQRYELTLQPQLILLQ 409
Query: 545 RAFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMS 604
+ +EG+G LDP VA P + +L +++ S +++ ++RK+ + +
Sbjct: 410 KTLLNIEGVGRQLDPKLDIWAVARPVLERIL---RERYSPRRVLGELRKRLPEIMTHAPD 466
Query: 605 MPSRVQRIEEFVKQLEAGDLKLRVRVLESERAARKATILQMATMYTVCGGTLLNLGVTFT 664
MP V ++KQ G +L +R E LQ + + G LL +
Sbjct: 467 MPRLVH---SWLKQQVEGRHQLDIRSSELRALDLSLRKLQTRVVTAITGSGLLVVAAVLY 523
Query: 665 GQGSQIIANGSFIG 678
G + NG ++G
Sbjct: 524 G----LHPNGWYLG 533
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 207 bits (526), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 128/402 (31%), Positives = 209/402 (51%), Gaps = 9/402 (2%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP FIK GQL STR DL P + DELA+LQD+VP F ++A I+ +LGAP
Sbjct: 59 LRLALEDLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQLGAP 118
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQ 318
+ QLF F+ +P+A+AS+ QVH A L +GE+VVVKV RPGLK + DL L L+A +
Sbjct: 119 VSQLFARFDSQPLASASVAQVHAAQLKSGEEVVVKVVRPGLKPVIRQDLAWLFLLARIAE 178
Query: 319 RSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTA 378
R+ R + + + ++ E+D + E NA + RR+F + VP V+WD
Sbjct: 179 RASADARRLRP-VEVVSDYEKTIFDELDLLREAANASQLRRNFEGSPLLYVPQVYWDLCR 237
Query: 379 TKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVD 438
+VL +E + GV + +L L Q + +A R +E + Q+ + FFHAD HPGN+ V
Sbjct: 238 HQVLVMERIYGVPVTDLATLADQRTDMKLLAERGVEIFFTQVFRDSFFHADMHPGNIFVS 297
Query: 439 ----LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMS 494
I D G++G + ++ L A +++D +KV Q ID + ++
Sbjct: 298 TRTPWSPQYIAIDCGIIGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPADTKVN 357
Query: 495 SVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIG 554
+++ + + + P + + + LF A+ + + +EG+G
Sbjct: 358 EFEAAIRTVCEPIF-EKPLKDISFGQLLLRLFQTARRFNMEVQPQLVLLQKTLLNIEGLG 416
Query: 555 NILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQAD 596
L PD A P+ + + +++ S L+ +++QA+
Sbjct: 417 RQLYPDLDLWSTAQPFLERWM---RERVSPLHLLRNLQQQAE 455
>sp|A5WA47|UBIB_PSEP1 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1
Length = 540
Score = 207 bits (526), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 197/381 (51%), Gaps = 6/381 (1%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP FIK GQL STR DL P + DEL LQDRVP F P+KA I+ +LGA
Sbjct: 60 LRLALQDLGPIFIKFGQLLSTRRDLLPPDIADELMLLQDRVPPFDPKKAVALIEEQLGAK 119
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQ 318
+ ++F F+ P+A+AS+ QVH A L GE+VVVKV RPGLK + DL L LIA+ +
Sbjct: 120 VGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDLAWLFLIAKAAE 179
Query: 319 RSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTA 378
R+ + I + +Y E+D + E NA + RR+F + + + VP V+WD
Sbjct: 180 RASADARRLHP-VEIVGDYEKTIYDELDLLREAANASQLRRNFEDSELMYVPQVYWDLCR 238
Query: 379 TKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVD 438
KVL +E + GV + ++ L Q + +A R +E + Q+ + FFHAD HPGN+ V
Sbjct: 239 PKVLVMERIYGVPVTDMATLADQRTDMKLLAERGVEVFFTQVFRDSFFHADMHPGNIFVS 298
Query: 439 ----LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMS 494
I D G++G + + ++ L +A +++D ++V Q ID + ++
Sbjct: 299 TVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLFAFFKRDYRRVAQLHIDSGWVPANTKVN 358
Query: 495 SVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIG 554
+++ + + + P + + + LF A+ + + +EG+G
Sbjct: 359 EFEAAIRTVCEPIF-EKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLG 417
Query: 555 NILDPDFSFVKVAAPYAQELL 575
L PD A PY + +
Sbjct: 418 RQLYPDLDLWSTAKPYLERWM 438
>sp|B0U2R2|UBIB_XYLFM Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M12) GN=ubiB PE=3 SV=1
Length = 552
Score = 206 bits (525), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 130/401 (32%), Positives = 207/401 (51%), Gaps = 18/401 (4%)
Query: 184 SEDKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFS 243
+E +++R R+ LR ++ +LGP F+K GQ+ STR DL P++ DEL LQDRV F
Sbjct: 44 AEIVEQSRGRR----LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFE 99
Query: 244 PEKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLF 303
+ AR I+ LG +E F F+ P+A+AS+ QVH A LH+ +VVVKV RP ++
Sbjct: 100 GQTARIIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRREVVVKVLRPDIEHQI 159
Query: 304 DIDLRNLKLIAEYFQRSETFGGPTRDWI---GIYDECATILYQEIDYINEGKNADRFRRD 360
D+ LK +A + + P D I I E T L E+D EG NA RR
Sbjct: 160 SDDIALLKSLATLVEHTH----PNADKIRPREIVAEIETTLAAELDLQREGANASVLRRF 215
Query: 361 FRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQI 420
+ + VP V W +TA +VLTLE + G+ +++ LD G +R ++S+ I + Q+
Sbjct: 216 WEASDDIYVPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQV 275
Query: 421 LKTGFFHADPHPGNLAVDLDEA------LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
+ FFHAD H GN+ VD D A I DFG+MG++ + L + F A++ KD
Sbjct: 276 FRDNFFHADAHSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENFMAIFHKDY 335
Query: 475 KKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPF 534
+++ + ++ + + + + + + ++ P Q +LA + LF +A+
Sbjct: 336 RRIAELHVEAGWIPQHVRIEELEAAARSVCEPYFTR-PLSQISLAEVLMKLFHVARRYQL 394
Query: 535 RFPSTFTFVIRAFSTLEGIGNILDPDFSFVKVAAPYAQELL 575
+ + +EG+G LDP+ VA P + +L
Sbjct: 395 TLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARPVLERIL 435
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 206 bits (525), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 202/388 (52%), Gaps = 22/388 (5%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP F+K GQ+ STR DL P +F +ELAKLQD+VP F A ++ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL----HNGEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
I+ LF FE P+A+AS+ QVH A L H G+ V VKV RP + + D DL ++ IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ +R G R+ + +D+ L+ E+D + E N + RR+F + + VP +
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
FWDY+ VL +E + GV I+++ L G + ++A +E + Q+ + GFFHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQ 488
GN+ V LD I DFG++G + F + L F A +++D +V ++ +
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 489 PTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVI 544
P + S++R + + D L + +L + LF+ ++ +
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQ 403
Query: 545 RAFSTLEGIGNILDPDFSFVKVAAPYAQ 572
+ +EG+G LDP+ K A PY +
Sbjct: 404 KTMLNVEGLGRSLDPELDLWKTAKPYLE 431
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 206 bits (525), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 202/388 (52%), Gaps = 22/388 (5%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP F+K GQ+ STR DL P +F +ELAKLQD+VP F A ++ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL----HNGEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
I+ LF FE P+A+AS+ QVH A L H G+ V VKV RP + + D DL ++ IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ +R G R+ + +D+ L+ E+D + E N + RR+F + + VP +
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
FWDY+ VL +E + GV I+++ L G + ++A +E + Q+ + GFFHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQ 488
GN+ V LD I DFG++G + F + L F A +++D +V ++ +
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 489 PTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVI 544
P + S++R + + D L + +L + LF+ ++ +
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQ 403
Query: 545 RAFSTLEGIGNILDPDFSFVKVAAPYAQ 572
+ +EG+G LDP+ K A PY +
Sbjct: 404 KTMLNVEGLGRSLDPELDLWKTAKPYLE 431
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 206 bits (525), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 202/388 (52%), Gaps = 22/388 (5%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP F+K GQ+ STR DL P +F +ELAKLQD+VP F A ++ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL----HNGEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
I+ LF FE P+A+AS+ QVH A L H G+ V VKV RP + + D DL ++ IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ +R G R+ + +D+ L+ E+D + E N + RR+F + + VP +
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
FWDY+ VL +E + GV I+++ L G + ++A +E + Q+ + GFFHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQ 488
GN+ V LD I DFG++G + F + L F A +++D +V ++ +
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 489 PTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVI 544
P + S++R + + D L + +L + LF+ ++ +
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQ 403
Query: 545 RAFSTLEGIGNILDPDFSFVKVAAPYAQ 572
+ +EG+G LDP+ K A PY +
Sbjct: 404 KTMLNVEGLGRSLDPELDLWKTAKPYLE 431
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 206 bits (525), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 202/388 (52%), Gaps = 22/388 (5%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP F+K GQ+ STR DL P +F +ELAKLQD+VP F A ++ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL----HNGEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
I+ LF FE P+A+AS+ QVH A L H G+ V VKV RP + + D DL ++ IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ +R G R+ + +D+ L+ E+D + E N + RR+F + + VP +
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
FWDY+ VL +E + GV I+++ L G + ++A +E + Q+ + GFFHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQ 488
GN+ V LD I DFG++G + F + L F A +++D +V ++ +
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 489 PTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVI 544
P + S++R + + D L + +L + LF+ ++ +
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQ 403
Query: 545 RAFSTLEGIGNILDPDFSFVKVAAPYAQ 572
+ +EG+G LDP+ K A PY +
Sbjct: 404 KTMLNVEGLGRSLDPELDLWKTAKPYLE 431
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 206 bits (525), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 202/388 (52%), Gaps = 22/388 (5%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP F+K GQ+ STR DL P +F +ELAKLQD+VP F A ++ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL----HNGEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
I+ LF FE P+A+AS+ QVH A L H G+ V VKV RP + + D DL ++ IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ +R G R+ + +D+ L+ E+D + E N + RR+F + + VP +
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
FWDY+ VL +E + GV I+++ L G + ++A +E + Q+ + GFFHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQ 488
GN+ V LD I DFG++G + F + L F A +++D +V ++ +
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 489 PTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVI 544
P + S++R + + D L + +L + LF+ ++ +
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQ 403
Query: 545 RAFSTLEGIGNILDPDFSFVKVAAPYAQ 572
+ +EG+G LDP+ K A PY +
Sbjct: 404 KTMLNVEGLGRSLDPELDLWKTAKPYLE 431
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 206 bits (525), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 202/388 (52%), Gaps = 22/388 (5%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP F+K GQ+ STR DL P +F +ELAKLQD+VP F A ++ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL----HNGEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
I+ LF FE P+A+AS+ QVH A L H G+ V VKV RP + + D DL ++ IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ +R G R+ + +D+ L+ E+D + E N + RR+F + + VP +
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
FWDY+ VL +E + GV I+++ L G + ++A +E + Q+ + GFFHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQ 488
GN+ V LD I DFG++G + F + L F A +++D +V ++ +
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 489 PTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVI 544
P + S++R + + D L + +L + LF+ ++ +
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQ 403
Query: 545 RAFSTLEGIGNILDPDFSFVKVAAPYAQ 572
+ +EG+G LDP+ K A PY +
Sbjct: 404 KTMLNVEGLGRSLDPELDLWKTAKPYLE 431
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 206 bits (525), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 202/388 (52%), Gaps = 22/388 (5%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP F+K GQ+ STR DL P +F +ELAKLQD+VP F A ++ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL----HNGEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
I+ LF FE P+A+AS+ QVH A L H G+ V VKV RP + + D DL ++ IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ +R G R+ + +D+ L+ E+D + E N + RR+F + + VP +
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
FWDY+ VL +E + GV I+++ L G + ++A +E + Q+ + GFFHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQ 488
GN+ V LD I DFG++G + F + L F A +++D +V ++ +
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 489 PTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVI 544
P + S++R + + D L + +L + LF+ ++ +
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQ 403
Query: 545 RAFSTLEGIGNILDPDFSFVKVAAPYAQ 572
+ +EG+G LDP+ K A PY +
Sbjct: 404 KTMLNVEGLGRSLDPELDLWKTAKPYLE 431
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 206 bits (525), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 202/388 (52%), Gaps = 22/388 (5%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP F+K GQ+ STR DL P +F +ELAKLQD+VP F A ++ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL----HNGEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
I+ LF FE P+A+AS+ QVH A L H G+ V VKV RP + + D DL ++ IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ +R G R+ + +D+ L+ E+D + E N + RR+F + + VP +
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
FWDY+ VL +E + GV I+++ L G + ++A +E + Q+ + GFFHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQ 488
GN+ V LD I DFG++G + F + L F A +++D +V ++ +
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 489 PTGDM----SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVI 544
P + S++R + + D L + +L + LF+ ++ +
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRAL-----KDISLGQVLMRLFSTSRRFNVEIQPQLVLLQ 403
Query: 545 RAFSTLEGIGNILDPDFSFVKVAAPYAQ 572
+ +EG+G LDP+ K A PY +
Sbjct: 404 KTMLNVEGLGRSLDPELDLWKTAKPYLE 431
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 206 bits (525), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 197/381 (51%), Gaps = 6/381 (1%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP FIK GQ+ STR DL P + DEL LQDRVP F+P+++ I+ +LGA
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVPPFNPQQSVALIEEQLGAR 119
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQ 318
+++ F F+ P+A+AS+ QVH A L GE+VVVKV RPGLK + DL L L A +
Sbjct: 120 VDEAFARFDSEPLASASVAQVHAAQLKTGEEVVVKVVRPGLKAVIRQDLAWLYLFARLAE 179
Query: 319 RSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTA 378
R+ T + + + +Y E+D + E NA + +R+F + VP ++WD+
Sbjct: 180 RAST-EARRLHLVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQIYWDWCR 238
Query: 379 TKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVD 438
KVL +E + GV + +L AL QG + +A R +E + Q+ + FFHAD HPGN+ V
Sbjct: 239 PKVLVMERIYGVPVTDLAALVDQGTDLKLLAERGVEIFFTQVFRDSFFHADMHPGNIFVS 298
Query: 439 ----LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMS 494
D I D G++G + ++ L A +++D +KV Q ID + ++
Sbjct: 299 TRQPWDPQYIAIDCGIVGSLTPQDQDYLARNLLAFFKRDYRKVAQLHIDSGWVPADTQVN 358
Query: 495 SVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIG 554
+++ + + + P + + + LF A+ + + +EG+G
Sbjct: 359 EFEAAIRTVCEPIF-EKPLKDISFGQLLLRLFQTARRFNMEVQPQLVLLQKTLLNIEGLG 417
Query: 555 NILDPDFSFVKVAAPYAQELL 575
L P+ A P+ + +
Sbjct: 418 RQLYPELDLWTTAKPFLERWM 438
>sp|Q8PDW1|UBIB_XANCP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=ubiB PE=3 SV=1
Length = 557
Score = 205 bits (522), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 146/494 (29%), Positives = 240/494 (48%), Gaps = 29/494 (5%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ +LGP F+K GQ+ STR DL P + +EL LQDRV F E AR ++ LG P
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVKPFDGEAARLIVERALGLP 114
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL---HNG--EKVVVKVQRPGLKRLFDIDLRNLKLI 313
+ F F+ P+A+AS+ QVH A L NG +VVVKV RP ++R D D+ L +
Sbjct: 115 VSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLHSL 174
Query: 314 AEYFQRSETFGGPTRDWIGIYDECATI---LYQEIDYINEGKNADRFRRDFRNIKWVRVP 370
A +R+ P D I + A I L E+D EG NA RR + + VP
Sbjct: 175 ATLVERTH----PRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEGSDDLYVP 230
Query: 371 LVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADP 430
V W +TA + LTLE V G+ +++ LD G +R +A++ + + Q+ + FFHAD
Sbjct: 231 EVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADA 290
Query: 431 HPGNLAVD------LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDL 484
H GN+ VD L+ I DFG+MG++ + L + F A++ KD +++ + ++
Sbjct: 291 HAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEA 350
Query: 485 EALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVI 544
+ + + + + + ++ P + +LA + LF +AQ +
Sbjct: 351 GWMPSNVRIDELEAAARSVCEPYFTR-PLSEISLAEVLIKLFRVAQRYELTLQPQLILLQ 409
Query: 545 RAFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMS 604
+ +EG+G LDP VA P + +L +++ S +++ ++RK+ + +
Sbjct: 410 KTLLNIEGVGRQLDPKLDIWAVARPVLERIL---RERYSPRRVLGELRKRLPEIMTHAPD 466
Query: 605 MPSRVQRIEEFVKQLEAGDLKLRVRVLESERAARKATILQMATMYTVCGGTLLNLGVTFT 664
MP V ++KQ G +L +R E LQ + + G LL +
Sbjct: 467 MPRLVH---SWLKQQVEGRHQLDIRSSELRALDLSLRKLQTRVVTAITGSGLLVVAAVLY 523
Query: 665 GQGSQIIANGSFIG 678
G + +G ++G
Sbjct: 524 G----LHPDGWYLG 533
>sp|Q4V052|UBIB_XANC8 Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain 8004) GN=ubiB PE=3
SV=1
Length = 557
Score = 205 bits (522), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 146/494 (29%), Positives = 240/494 (48%), Gaps = 29/494 (5%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ +LGP F+K GQ+ STR DL P + +EL LQDRV F E AR ++ LG P
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVKPFDGEAARLIVERALGLP 114
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL---HNG--EKVVVKVQRPGLKRLFDIDLRNLKLI 313
+ F F+ P+A+AS+ QVH A L NG +VVVKV RP ++R D D+ L +
Sbjct: 115 VSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLHSL 174
Query: 314 AEYFQRSETFGGPTRDWIGIYDECATI---LYQEIDYINEGKNADRFRRDFRNIKWVRVP 370
A +R+ P D I + A I L E+D EG NA RR + + VP
Sbjct: 175 ATLVERTH----PRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEGSDDLYVP 230
Query: 371 LVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADP 430
V W +TA + LTLE V G+ +++ LD G +R +A++ + + Q+ + FFHAD
Sbjct: 231 EVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADA 290
Query: 431 HPGNLAVD------LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDL 484
H GN+ VD L+ I DFG+MG++ + L + F A++ KD +++ + ++
Sbjct: 291 HAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEA 350
Query: 485 EALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVI 544
+ + + + + + ++ P + +LA + LF +AQ +
Sbjct: 351 GWMPSNVRIDELEAAARSVCEPYFTR-PLSEISLAEVLIKLFRVAQRYELTLQPQLILLQ 409
Query: 545 RAFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMS 604
+ +EG+G LDP VA P + +L +++ S +++ ++RK+ + +
Sbjct: 410 KTLLNIEGVGRQLDPKLDIWAVARPVLERIL---RERYSPRRVLGELRKRLPEIMTHAPD 466
Query: 605 MPSRVQRIEEFVKQLEAGDLKLRVRVLESERAARKATILQMATMYTVCGGTLLNLGVTFT 664
MP V ++KQ G +L +R E LQ + + G LL +
Sbjct: 467 MPRLVH---SWLKQQVEGRHQLDIRSSELRALDLSLRKLQTRVVTAITGSGLLVVAAVLY 523
Query: 665 GQGSQIIANGSFIG 678
G + +G ++G
Sbjct: 524 G----LHPDGWYLG 533
>sp|Q1I3S8|UBIB_PSEE4 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
entomophila (strain L48) GN=ubiB PE=3 SV=1
Length = 537
Score = 203 bits (517), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 126/402 (31%), Positives = 205/402 (50%), Gaps = 9/402 (2%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP FIK GQL STR DL P + DEL LQDRVP F P+ A I+ +LGA
Sbjct: 60 LRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQHAVALIEEQLGAK 119
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQ 318
+ ++F F+ P+A+AS+ QVH A L +GE+VVVKV RPGLK + DL L LIA+ +
Sbjct: 120 VGEVFSRFDVEPLASASVAQVHAARLKSGEEVVVKVVRPGLKPVIAQDLAWLFLIAKAAE 179
Query: 319 RSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTA 378
R+ + I + +Y E+D + E NA + RR+F + + VP V+WD
Sbjct: 180 RASADARRLHP-VEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQVYWDLCR 238
Query: 379 TKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVD 438
KVL +E + GV + ++ L Q + +A R +E + Q+ + FFHAD HPGN+ V
Sbjct: 239 PKVLVMERIYGVPVTDMATLADQRTDMKMLAERGVEVFFTQVFRDSFFHADMHPGNIFVS 298
Query: 439 ----LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMS 494
I D G++G + + ++ L A +++D ++V Q ID + ++
Sbjct: 299 TVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRVAQLHIDSGWVPAQTKVN 358
Query: 495 SVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIG 554
+++ + + + P + + + LF A+ + + +EG+G
Sbjct: 359 EFEAAIRTVCEPIF-EKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLG 417
Query: 555 NILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQAD 596
L PD A P+ + + +++ S ++ + QA+
Sbjct: 418 RQLYPDLDLWSTAKPFLERWM---RERMSPKAVIGNLYNQAE 456
>sp|B8CI04|UBIB_SHEPW Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=ubiB PE=3 SV=1
Length = 549
Score = 203 bits (517), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 140/506 (27%), Positives = 248/506 (49%), Gaps = 18/506 (3%)
Query: 187 KQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEK 246
+ K++ + L+ ++ +LGP +IK GQ+ STR DL E+ +ELA LQDRVP F
Sbjct: 45 RNKHKDKVGGERLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAEELAMLQDRVPPFDSAI 104
Query: 247 ARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILH-NGEKVVVKVQRPGLKRLFDI 305
AR I+ EL APIE F FED P+A+AS+ QVH A L NG KVV+KV RP +++
Sbjct: 105 ARESIEQELNAPIETYFDDFEDTPLASASISQVHTATLKSNGAKVVLKVLRPDVEQKVHA 164
Query: 306 DLRNLKLIAEYFQRSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIK 365
D++ + A + + R + ++ T + E++ E NA + R +F +
Sbjct: 165 DIQLMSQAANFLESLLGANNRLRP-AEVVEDYRTTIEGELNLKLEALNAIKLRNNFLDSN 223
Query: 366 WVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGF 425
+ +P ++ + T+++ +E + GV +++ AL+ QG N +A R +E + Q+ + F
Sbjct: 224 ALYIPYMYEELCFTRLIVMERIDGVPVSDKAALEAQGTNLKLLAERGVELFFTQVFRDNF 283
Query: 426 FHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRL 481
FHAD HPGN+ V D I D G+MG + + L + F A + +D +++ Q
Sbjct: 284 FHADMHPGNIFVSREHPNDPFYIGLDCGIMGTLTDEDKRYLAENFLAFFNRDYRRIAQLY 343
Query: 482 IDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFT 541
I+ + D+S+ ++V+ + + ++ P + + + +LF A+
Sbjct: 344 IESGWVSADTDISAFEQAVKVVCEPMFNK-PLDEISFGHVLLELFRTARRFDMVVQPQLV 402
Query: 542 FVIRAFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSS 601
+ + +EG+G L P + A P+ + D +Q + +I++Q
Sbjct: 403 LLEKTLLYIEGLGRQLYPQLDLWQTAKPFLE---DWMAEQVGPKAMAGKIKQQLPYWADQ 459
Query: 602 TMSMPSRVQRIEEFVKQLEAGDLKLRVRVLESERAARKATILQMAT-MYTVCGGTLLNLG 660
+P + + + L KL R L+ ++ A K+ L + + + +CG LLN
Sbjct: 460 LPELPELIYDNLKMGRNLAKTHNKLLDRYLKHQQKAHKSNYLLITSAILVICGTILLN-- 517
Query: 661 VTFTGQGSQIIANGSFIGAGVFFTLL 686
Q + + A+ IG G+ +L
Sbjct: 518 -----QDATLWASYGSIGTGLILWVL 538
>sp|B9ME24|UBIB_ACIET Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax ebreus
(strain TPSY) GN=ubiB PE=3 SV=1
Length = 521
Score = 203 bits (517), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 133/435 (30%), Positives = 226/435 (51%), Gaps = 30/435 (6%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LRE++ LGP F+K GQ+ STR DL P + DELA LQDRVP F P+ A I+ P
Sbjct: 53 LREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRP 112
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHN----GEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
I ++F +F+ +P+A+AS+ QVH A++ + +V VKV RPG+ + D DL ++++A
Sbjct: 113 IGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMRMMA 172
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ + G R+ + +D L+ E+D + E NA + RR+ + + V +P V
Sbjct: 173 GWVESLSADGKRLKPREVVAEFD---NYLHDELDLVREAANAAQLRRNMQGLDLVLIPEV 229
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
FWD+ +VL +E + GV IN+++ L G + ++A + + Q+ + GFFHAD HP
Sbjct: 230 FWDFCHAEVLVMERMKGVPINQVERLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHP 289
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLID---LE 485
GN+ V L I DFG++G + F +E L F A + +D K+V + I+ +
Sbjct: 290 GNIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIESGWVP 349
Query: 486 ALQPTGDMSSVRRSV-QFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVI 544
A ++ + R+V + + D P ++ +L + LF ++ +
Sbjct: 350 AHTRVNELEAAIRTVCEPYFDR-----PLKEISLGMVLLRLFQTSRRFQVEIQPQLVLLQ 404
Query: 545 RAFSTLEGIGNILDPDFSFVKVAAPYAQE-LLDLKQQQQSGTQLVEQIRKQADDARSSTM 603
+ +EG+G LDPD A P+ ++ +LD Q +L ++R +A
Sbjct: 405 KTLLNIEGLGRQLDPDLDLWSTAKPFLEKWMLD----QLGPQRLWRELRAEAPHYAKILP 460
Query: 604 SMPSRVQRIEEFVKQ 618
+P + + +F++Q
Sbjct: 461 DLP---RLLHDFLRQ 472
>sp|A9BP42|UBIB_DELAS Probable ubiquinone biosynthesis protein UbiB OS=Delftia
acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1
Length = 521
Score = 203 bits (517), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 126/419 (30%), Positives = 220/419 (52%), Gaps = 17/419 (4%)
Query: 186 DKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPE 245
DK + +R LRE++ +LGP F+K GQ+ STRSDL P + +ELA+LQDRVP F +
Sbjct: 46 DKPRGQR------LREALEELGPIFVKFGQVLSTRSDLMPPDVAEELARLQDRVPPFDSQ 99
Query: 246 KARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAIL--HNG--EKVVVKVQRPGLKR 301
A I+ ++Q+F +FE P+A+AS+ QVH A++ NG V VKV RPG+K
Sbjct: 100 IAVDTIERAFRKKLDQIFVSFEREPVASASIAQVHFAVISDRNGVQRDVAVKVLRPGMKT 159
Query: 302 LFDIDLRNLKLIAEYFQRSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDF 361
+ D DL + ++A + +R G + + E L+ E+D I E NA + RR+
Sbjct: 160 VIDKDLALMHMMARWVERLSADGKRLKP-RQVVAEFDNYLHDELDLIREASNAAQLRRNM 218
Query: 362 RNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQIL 421
+ V +P V+WD+ + V+ ++ + GV I++++ L G + ++A + + Q+
Sbjct: 219 EGLDLVLIPEVYWDFCRSDVMVMQRMTGVPISQVERLREAGVDIPKLARDGVTIFFTQVF 278
Query: 422 KTGFFHADPHPGNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKV 477
+ GFFHAD HPGN+ V L+ I DFG++G + + +E L F A + +D K+V
Sbjct: 279 RDGFFHADMHPGNIMVSLEPETFGRYISLDFGIVGTLTEYDKEYLAQNFTAFFRRDYKRV 338
Query: 478 IQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFP 537
+ I+ + P+ + + +++ + + P + +L + LF ++
Sbjct: 339 AELHIESGWVPPSTRVDELEAAIRAVCEPYFDR-PLAEISLGMVLMRLFQTSRRFQVEIQ 397
Query: 538 STFTFVIRAFSTLEGIGNILDPDFSFVKVAAPYAQE-LLDLKQQQQSGTQLVEQIRKQA 595
+ + +EG+G LDP+ A P+ ++ +LD Q+ +L+ + + A
Sbjct: 398 PQLVLLQKTLLNIEGLGRQLDPNLDLWSTAKPFLEKWMLDQMGPQRLWRELLAEAPRYA 456
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 203 bits (516), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 121/401 (30%), Positives = 211/401 (52%), Gaps = 9/401 (2%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ +LGP F+K GQ+ STR DL P + +ELAKLQDRVP F + +R + LG P
Sbjct: 53 LRMALERLGPIFVKFGQVLSTRRDLIPHDIANELAKLQDRVPPFPSDVSRAAVVQSLGRP 112
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQ 318
IE++F +F+ P+A+AS+ QVH +LH+G +V VKV RP + + + DL L++ A + +
Sbjct: 113 IEEVFASFDADPVASASIAQVHFGVLHDGREVAVKVLRPNVLNIIEADLALLRVAAAWLE 172
Query: 319 RSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTA 378
R G R + E L+ E+D E NA + RR+ + + +P + WD ++
Sbjct: 173 RLSPDGRRLRP-REVVAEFDNYLHDELDLGREAANAAQLRRNMGGLDLIMLPEMIWDLSS 231
Query: 379 TKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVD 438
+VL +E + GV I++++ L G + ++A + + Q+ + GFFHAD HPGN+ V
Sbjct: 232 AEVLVMERMHGVPISQIETLRAAGIDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIMVS 291
Query: 439 LDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMS 494
A I DFG++G + S +E L F A + +D ++V + I+ + + +
Sbjct: 292 TAPATFGRYIALDFGIVGTLDSRDKEYLAQNFLAFFRRDYRRVAELHIESGWVPASTRVD 351
Query: 495 SVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIG 554
+ +V+ + + P + +L + LF ++ + + +EG+G
Sbjct: 352 ELEGAVRAVCEPHFDR-PLKDISLGQVLLRLFQTSRRFNVEIQPQLVLLQKTLLNVEGLG 410
Query: 555 NILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQA 595
LDP+ + A P+ + ++ +Q L+ I+ +A
Sbjct: 411 RQLDPELDLWQTAKPFLERWMN---EQVGWRALLGSIKDEA 448
>sp|B0KM38|UBIB_PSEPG Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain GB-1) GN=ubiB PE=3 SV=1
Length = 540
Score = 202 bits (515), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 124/381 (32%), Positives = 195/381 (51%), Gaps = 6/381 (1%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP FIK GQL STR DL P + DEL LQDRVP F P+KA I+ +LGA
Sbjct: 60 LRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQKAVALIEEQLGAK 119
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQ 318
+ ++F F+ P+A+AS+ QVH A L GE+VVVKV RPGLK + DL L LIA+ +
Sbjct: 120 VGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDLAWLFLIAKAAE 179
Query: 319 RSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTA 378
R+ + I + +Y E+D + E NA + RR+F + + VP V+WD
Sbjct: 180 RASADARRLHP-VEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQVYWDLCR 238
Query: 379 TKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVD 438
KVL +E + GV + ++ L Q + +A R +E + Q+ + FFHAD HPGN+ V
Sbjct: 239 PKVLVMERIYGVPVTDMVTLADQRTDMKLLAERGVEVFFTQVFRDSFFHADMHPGNIFVS 298
Query: 439 ----LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMS 494
I D G++G + + ++ L A +++D ++V Q ID + ++
Sbjct: 299 TVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRVAQLHIDSGWVPAHTKVN 358
Query: 495 SVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIG 554
+++ + + + P + + + LF A+ + + +EG+G
Sbjct: 359 EFEAAIRTVCEPIF-EKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLG 417
Query: 555 NILDPDFSFVKVAAPYAQELL 575
L PD A P+ + +
Sbjct: 418 RQLYPDLDLWSTAKPFLERWM 438
>sp|Q5H616|UBIB_XANOR Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain KACC10331 / KXO85) GN=ubiB PE=3 SV=1
Length = 557
Score = 202 bits (515), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 146/497 (29%), Positives = 245/497 (49%), Gaps = 35/497 (7%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ +LGP F+K GQ+ STR DL P + +EL LQDRV F E AR ++ LG P
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGEAARLIVERALGLP 114
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL---HNG--EKVVVKVQRPGLKRLFDIDLRNLKLI 313
+ F +F+ P+A+AS+ QVH A L NG +VVVKV RP ++R D D+ L +
Sbjct: 115 VSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLHSL 174
Query: 314 AEYFQRSETFGGPTRDWIGIYDECATI---LYQEIDYINEGKNADRFRRDFRNIKWVRVP 370
A +R+ P D I + A I L E+D EG NA RR + + VP
Sbjct: 175 ATLVERTH----PRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEGSDDLYVP 230
Query: 371 LVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADP 430
V W +TA + LTLE V G+ +++ LD G +R +A++ + + Q+ + FFHAD
Sbjct: 231 EVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADA 290
Query: 431 HPGNLAVD------LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDL 484
H GN+ VD L+ I DFG+MG++ + L + F A++ KD +++ + ++
Sbjct: 291 HAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEA 350
Query: 485 EALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVI 544
+ + + + + + ++ P + +LA + LF +AQ +
Sbjct: 351 GWMPSNVRIDELEAAARSVCEPYFTR-PLSEISLAQVLIKLFRVAQRYELTLQPQLILLQ 409
Query: 545 RAFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMS 604
+ +EG+G LDP VA P + +L +++ S +++ ++ K+ + +
Sbjct: 410 KTLLNIEGVGRQLDPKLDIWAVARPVLERIL---RERYSPRRVLRELSKRLPEIMTHAPD 466
Query: 605 MPSRVQRIEEFVKQLEAGDLKLRVR---VLESERAARKATILQMATMYTVCGGTLLNLGV 661
MP V ++KQ G ++ +R +L + + RK LQ + + G LL +
Sbjct: 467 MPRLVH---SWLKQQVEGRHQIDIRSTELLALDLSLRK---LQTRVVTAITGSGLLVVAA 520
Query: 662 TFTGQGSQIIANGSFIG 678
G + +G ++G
Sbjct: 521 VLYG----LHPDGWYLG 533
>sp|B2ST34|UBIB_XANOP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain PXO99A) GN=ubiB PE=3 SV=1
Length = 557
Score = 202 bits (515), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 146/497 (29%), Positives = 245/497 (49%), Gaps = 35/497 (7%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ +LGP F+K GQ+ STR DL P + +EL LQDRV F E AR ++ LG P
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGEAARLIVERALGLP 114
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL---HNG--EKVVVKVQRPGLKRLFDIDLRNLKLI 313
+ F +F+ P+A+AS+ QVH A L NG +VVVKV RP ++R D D+ L +
Sbjct: 115 VSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLHSL 174
Query: 314 AEYFQRSETFGGPTRDWIGIYDECATI---LYQEIDYINEGKNADRFRRDFRNIKWVRVP 370
A +R+ P D I + A I L E+D EG NA RR + + VP
Sbjct: 175 ATLVERTH----PRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEGSDDLYVP 230
Query: 371 LVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADP 430
V W +TA + LTLE V G+ +++ LD G +R +A++ + + Q+ + FFHAD
Sbjct: 231 EVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADA 290
Query: 431 HPGNLAVD------LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDL 484
H GN+ VD L+ I DFG+MG++ + L + F A++ KD +++ + ++
Sbjct: 291 HAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEA 350
Query: 485 EALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVI 544
+ + + + + + ++ P + +LA + LF +AQ +
Sbjct: 351 GWMPSNVRIDELEAAARSVCEPYFTR-PLSEISLAQVLIKLFRVAQRYELTLQPQLILLQ 409
Query: 545 RAFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMS 604
+ +EG+G LDP VA P + +L +++ S +++ ++ K+ + +
Sbjct: 410 KTLLNIEGVGRQLDPKLDIWAVARPVLERIL---RERYSPRRVLRELSKRLPEIMTHAPD 466
Query: 605 MPSRVQRIEEFVKQLEAGDLKLRVR---VLESERAARKATILQMATMYTVCGGTLLNLGV 661
MP V ++KQ G ++ +R +L + + RK LQ + + G LL +
Sbjct: 467 MPRLVH---SWLKQQVEGRHQIDIRSTELLALDLSLRK---LQTRVVTAITGSGLLVVAA 520
Query: 662 TFTGQGSQIIANGSFIG 678
G + +G ++G
Sbjct: 521 VLYG----LHPDGWYLG 533
>sp|Q2P8Q0|UBIB_XANOM Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain MAFF 311018) GN=ubiB PE=3 SV=1
Length = 557
Score = 202 bits (515), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 146/497 (29%), Positives = 245/497 (49%), Gaps = 35/497 (7%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ +LGP F+K GQ+ STR DL P + +EL LQDRV F E AR ++ LG P
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGEAARLIVERALGLP 114
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL---HNG--EKVVVKVQRPGLKRLFDIDLRNLKLI 313
+ F +F+ P+A+AS+ QVH A L NG +VVVKV RP ++R D D+ L +
Sbjct: 115 VSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLHSL 174
Query: 314 AEYFQRSETFGGPTRDWIGIYDECATI---LYQEIDYINEGKNADRFRRDFRNIKWVRVP 370
A +R+ P D I + A I L E+D EG NA RR + + VP
Sbjct: 175 ATLVERTH----PRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEGSDDLYVP 230
Query: 371 LVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADP 430
V W +TA + LTLE V G+ +++ LD G +R +A++ + + Q+ + FFHAD
Sbjct: 231 EVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADA 290
Query: 431 HPGNLAVD------LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDL 484
H GN+ VD L+ I DFG+MG++ + L + F A++ KD +++ + ++
Sbjct: 291 HAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEA 350
Query: 485 EALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVI 544
+ + + + + + ++ P + +LA + LF +AQ +
Sbjct: 351 GWMPSNVRIDELEAAARSVCEPYFTR-PLSEISLAQVLIKLFRVAQRYELTLQPQLILLQ 409
Query: 545 RAFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMS 604
+ +EG+G LDP VA P + +L +++ S +++ ++ K+ + +
Sbjct: 410 KTLLNIEGVGRQLDPKLDIWAVARPVLERIL---RERYSPRRVLRELSKRLPEIMTHAPD 466
Query: 605 MPSRVQRIEEFVKQLEAGDLKLRVR---VLESERAARKATILQMATMYTVCGGTLLNLGV 661
MP V ++KQ G ++ +R +L + + RK LQ + + G LL +
Sbjct: 467 MPRLVH---SWLKQQVEGRHQIDIRSTELLALDLSLRK---LQTRVVTAITGSGLLVVAA 520
Query: 662 TFTGQGSQIIANGSFIG 678
G + +G ++G
Sbjct: 521 VLYG----LHPDGWYLG 533
>sp|A1W4D7|UBIB_ACISJ Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax sp.
(strain JS42) GN=ubiB PE=3 SV=1
Length = 521
Score = 202 bits (515), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 133/435 (30%), Positives = 225/435 (51%), Gaps = 30/435 (6%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LRE++ LGP F+K GQ+ STR DL P + DELA LQDRVP F P+ A I+ P
Sbjct: 53 LREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRP 112
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHN----GEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
I ++F +F+ +P+A+AS+ QVH A++ + +V VKV RPG+ + D DL ++++A
Sbjct: 113 IGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMRMMA 172
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ + G R+ + +D L+ E+D + E NA + RR+ + + V +P V
Sbjct: 173 GWVESLSADGKRLKPREVVAEFD---NYLHDELDLVREAANAAQLRRNMQGLDLVLIPEV 229
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
FWD+ +VL +E + GV IN++ L G + ++A + + Q+ + GFFHAD HP
Sbjct: 230 FWDFCHAEVLVMERMKGVPINQVDRLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHP 289
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLID---LE 485
GN+ V L I DFG++G + F +E L F A + +D K+V + I+ +
Sbjct: 290 GNIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIESGWVP 349
Query: 486 ALQPTGDMSSVRRSV-QFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVI 544
A ++ + R+V + + D P ++ +L + LF ++ +
Sbjct: 350 AHTRVNELEAAIRTVCEPYFDR-----PLKEISLGMVLLRLFQTSRRFQVEIQPQLVLLQ 404
Query: 545 RAFSTLEGIGNILDPDFSFVKVAAPYAQE-LLDLKQQQQSGTQLVEQIRKQADDARSSTM 603
+ +EG+G LDPD A P+ ++ +LD Q +L ++R +A
Sbjct: 405 KTLLNIEGLGRQLDPDLDLWSTAKPFLEKWMLD----QLGPQRLWRELRAEAPHYAKILP 460
Query: 604 SMPSRVQRIEEFVKQ 618
+P + + +F++Q
Sbjct: 461 DLP---RLLHDFLRQ 472
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 202 bits (513), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 225/429 (52%), Gaps = 18/429 (4%)
Query: 192 RRKTASWL----RESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKA 247
RR T++ L R ++ LGP F+K GQ+ STR DL P E+ DELA LQDRVP F + A
Sbjct: 41 RRDTSAPLPQRVRLALESLGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPPFDGDIA 100
Query: 248 RHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHN-----GEKVVVKVQRPGLKRL 302
R ++ LG +E+LF F+ +P+A+AS+ QVH+A L G +V VKV RPG+ +
Sbjct: 101 RQVVERSLGRKVEELFVDFDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLRPGILPV 160
Query: 303 FDIDLRNLKLIAEYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRD 360
+ DL ++ +A + ++ G R+ + +D+ L+ E+D ++E NA + RR+
Sbjct: 161 IEQDLSLMRTLAGWVEKLFADGKRLKPREVVAEFDKY---LHDELDMMHEAANASQLRRN 217
Query: 361 FRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQI 420
F+ + VP VF+DY++ +VLTLE++ G+ + +++ L G + +++ +E + Q+
Sbjct: 218 FKGSDMLIVPEVFYDYSSREVLTLEWMHGIPVGQIERLREAGVDLQKLSRFGVEIFFTQV 277
Query: 421 LKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQR 480
+ GFFHAD HPGN+ V D I DFG++G + + L F A + +D +V
Sbjct: 278 FRHGFFHADMHPGNIFVAADGRYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRVATA 337
Query: 481 LIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTF 540
I+ + + +V+ + + + P + + + LF ++
Sbjct: 338 HIESGWVPRDTRAEELEAAVRTVCEPIF-EKPLSEISFGMVLLRLFETSRRFNVEIQPQL 396
Query: 541 TFVIRAFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARS 600
+ + +EG+G LDP+ A P+ + ++ +Q L+ ++ +A +
Sbjct: 397 VLLQKTLLNIEGLGRQLDPELDLWDTAKPFLTKWMN---EQIGWRGLLRTLKHEAPQWAT 453
Query: 601 STMSMPSRV 609
+ ++P ++
Sbjct: 454 TLPTLPRKL 462
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 130/406 (32%), Positives = 208/406 (51%), Gaps = 18/406 (4%)
Query: 177 WAYLGGFSEDKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQ 236
+ +L G E+ R R+ LR + LGP+FIK GQ+ + R D+ ++++EL LQ
Sbjct: 152 YDFLVGRDEEVVPFRARQ----LRNLLCNLGPSFIKAGQVLANRPDIIREDYMNELCILQ 207
Query: 237 DRVPAFSPEKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILH-NGEKVVVKVQ 295
D VP F E A + I+ ELG P+E +F + IAAASLGQV+RA L GE V +KVQ
Sbjct: 208 DDVPPFPNEVAFNIIEEELGQPLENIFSKISSQTIAAASLGQVYRATLRATGEDVAIKVQ 267
Query: 296 RPGLKRLFDIDLRNLKLIAEYFQRSETFGGPTRDWIG-----IYDECATILYQEIDYINE 350
RP ++ + DL + +A + G + +G I DE L +E+DY E
Sbjct: 268 RPQIEPIIYRDLFLFRTLASFLN------GFSLQKLGCNAELIVDEFGEKLLEELDYTLE 321
Query: 351 GKNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAS 410
+N + F +F++ V++P V+ + +VL +E++ G++ + +A+ G + + +
Sbjct: 322 ARNIEDFLENFKDDPTVKIPGVYKNLCGPRVLVMEWIDGIRCTDPQAIKDAGIDLNGFLT 381
Query: 411 RAIEAYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVY 470
+ A L Q+L+ G FH DPHPGN+ D + Y DFG + + ++ L+D
Sbjct: 382 VGVSAALRQLLEFGLFHGDPHPGNIFAMQDGRIAYVDFGNVAVLSQQNKQILIDAVVHAV 441
Query: 471 EKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQ 530
+D ++ L L D+S + +++ N + + G+ +
Sbjct: 442 NEDYGEMANDFTRLGFLAKDTDVSPIVPALEAIWQNSAGKGLADFNFRSVTGQ-FNKLVY 500
Query: 531 DQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSFVKVAAPY-AQELL 575
D P R P F+ VIR+ T EGI L PDF F++VA PY A+ LL
Sbjct: 501 DFPIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLL 546
>sp|Q3BZ34|UBIB_XANC5 Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. vesicatoria (strain 85-10) GN=ubiB PE=3
SV=1
Length = 557
Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 145/497 (29%), Positives = 245/497 (49%), Gaps = 35/497 (7%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ +LGP F+K GQ+ STR DL P + +EL LQDRV F + AR ++ LG P
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGQAARLIVEAALGLP 114
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL---HNG--EKVVVKVQRPGLKRLFDIDLRNLKLI 313
+ F +F+ P+A+AS+ QVH A L NG +VVVKV RP ++R D D+ L +
Sbjct: 115 VSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPDIERQIDADIALLHSL 174
Query: 314 AEYFQRSETFGGPTRDWIGIYDECATI---LYQEIDYINEGKNADRFRRDFRNIKWVRVP 370
A +R+ P D I + A I L E+D EG NA RR + + VP
Sbjct: 175 ATLVERTH----PRADKIRPREVVAEIEGTLAAELDLQREGANASVLRRFWEGSDDLYVP 230
Query: 371 LVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADP 430
V W +TA + LTLE V G+ +++ LD G +R +A++ + + Q+ + FFHAD
Sbjct: 231 EVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADA 290
Query: 431 HPGNLAVD------LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDL 484
H GN+ VD L+ I DFG+MG++ + L + F A++ KD +++ + ++
Sbjct: 291 HAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEA 350
Query: 485 EALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVI 544
+ + + + + + ++ P + +LA + LF +AQ +
Sbjct: 351 GWMPSNVRIDELEAAARSVCEPYFTR-PLSEISLAQVLIKLFRVAQRYELTLQPQLILLQ 409
Query: 545 RAFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMS 604
+ +EG+G LDP VA P + +L +++ S +++ ++ K+ + +
Sbjct: 410 KTLLNIEGVGRQLDPKLDIWAVARPVLERIL---RERYSPRRVLRELGKRLPEIMTHAPD 466
Query: 605 MPSRVQRIEEFVKQLEAGDLKLRVR---VLESERAARKATILQMATMYTVCGGTLLNLGV 661
MP V ++KQ G ++ +R +L + + RK LQ + + G LL +
Sbjct: 467 MPRLVH---SWLKQQVEGRHQIDIRSPELLALDLSLRK---LQTRVVTAITGSGLLVVAA 520
Query: 662 TFTGQGSQIIANGSFIG 678
G + +G ++G
Sbjct: 521 VLYG----LHPDGWYLG 533
>sp|Q12S25|UBIB_SHEDO Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
GN=ubiB PE=3 SV=1
Length = 549
Score = 200 bits (509), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 140/509 (27%), Positives = 251/509 (49%), Gaps = 16/509 (3%)
Query: 181 GGFSEDKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVP 240
G F + +++ + A L+ ++ +LGP +IKLGQ+ STR DL E+ +LA LQDRVP
Sbjct: 39 GCFFWIRNQHKDKSAAERLKLAMQELGPVYIKLGQMLSTRRDLLDDEWAYQLAMLQDRVP 98
Query: 241 AFSPEKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILH-NGEKVVVKVQRPGL 299
F AR I+ EL A I+ LF F+D P+A+AS+ QVH A L NG+ VV+KV RP +
Sbjct: 99 PFDSALAREAIETELNASIDSLFDDFDDVPLASASIAQVHSATLKSNGKAVVLKVLRPNV 158
Query: 300 KRLFDIDLRNLKLIAEYFQRSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRR 359
+ L DL+ + A +R G R I D TIL E++ E NA + R
Sbjct: 159 EALILADLQLMSHCAALLERILGDGNRLRPAEVIEDYRLTIL-GELNLKLEALNAIKLRN 217
Query: 360 DFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQ 419
+F + + VP ++ D + T+++ +E + G+ +++L AL QG N +A R +E + Q
Sbjct: 218 NFLDSDALYVPYIYEDLSFTRLIVMERIYGIAVSDLSALKAQGTNLKLLAERGVELFFTQ 277
Query: 420 ILKTGFFHADPHPGNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAK 475
+ + FFHAD HPGN+ + D I D G+MG + + L + F A + +D +
Sbjct: 278 VFRDNFFHADMHPGNIFISRDHPDNPYYIGLDCGIMGTLTDVDKRYLAENFLAFFNRDYQ 337
Query: 476 KVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFR 535
++ Q ++ + D+ + ++++ + + ++ P + + + LF A+
Sbjct: 338 RIAQLHLESGWVSEHTDIVAFEQAIKIVCEPMFNK-PLAEISFGHVLLALFRTARQFNMV 396
Query: 536 FPSTFTFVIRAFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQA 595
+ + +EG+G L P + A P+ ++ + +Q L ++ + A
Sbjct: 397 VQPQLVLLQKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWM---AKQVGPKALFDKFKSNA 453
Query: 596 DDARSSTMSMPSRVQRIEEFVKQLEAGDLKLRVRVLESERAARKATILQMAT-MYTVCGG 654
+P V + ++L ++ + L+ + A K+ L + + ++ +CG
Sbjct: 454 PFWAEKLPELPELVYDNLKLGRKLLGTQQQMLDKYLKYQHKAHKSNYLLITSAVFVICGT 513
Query: 655 TLLNLGVTFTGQGSQIIANGSFIGAGVFF 683
L VT + ++ G+ GAG++
Sbjct: 514 ILFTQAVTL---WASLLCLGT--GAGLWL 537
>sp|B1J2S6|UBIB_PSEPW Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain W619) GN=ubiB PE=3 SV=1
Length = 539
Score = 200 bits (509), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 196/381 (51%), Gaps = 6/381 (1%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP FIK GQL STR DL P + DEL LQDRVP F P++A I+++LGA
Sbjct: 59 LRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPKQAVALIESQLGAK 118
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQ 318
+ ++F F+ P+A+AS+ QVH A L GE+VVVKV RPGLK + DL L LIA+ +
Sbjct: 119 VGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDLAWLFLIAKGAE 178
Query: 319 RSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTA 378
R+ + I + +Y E+D + E NA + RR+F + + VP V+WD
Sbjct: 179 RASADARRLHP-VEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQVYWDLCR 237
Query: 379 TKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVD 438
KVL +E + GV + ++ L Q + +A R +E + Q+ + FFHAD HPGN+ V
Sbjct: 238 PKVLVMERIYGVPVTDMATLADQRTDMKLLAERGVEVFFTQVFRHSFFHADMHPGNIFVS 297
Query: 439 ----LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMS 494
I D G++G + + ++ L A +++D ++V + ID + ++
Sbjct: 298 TVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRVAELHIDSGWVPAHTKVN 357
Query: 495 SVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIG 554
+++ + + + P + + + LF A+ + + +EG+G
Sbjct: 358 EFEAAIRTVCEPIF-EKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLG 416
Query: 555 NILDPDFSFVKVAAPYAQELL 575
L PD A P+ + +
Sbjct: 417 RQLYPDLDLWSTAKPFLERWM 437
>sp|A1TTA2|UBIB_ACIAC Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax
citrulli (strain AAC00-1) GN=ubiB PE=3 SV=1
Length = 522
Score = 200 bits (509), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 125/391 (31%), Positives = 205/391 (52%), Gaps = 22/391 (5%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LRE++ +LGP F+K GQ+ STR DL P + +ELA LQDRVP F P+ A I+ P
Sbjct: 53 LREALERLGPIFVKFGQVLSTRRDLLPPDIANELALLQDRVPPFDPDVAVATIERAFRRP 112
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL---HNGEK-VVVKVQRPGLKRLFDIDLRNLKLIA 314
+ ++F +FE P+A+AS+ QVH AI+ H E+ V VKV RPG+ + D DL ++ +A
Sbjct: 113 VGEVFVSFERVPVASASIAQVHFAIVRDRHGVEREVAVKVLRPGMLPVIDNDLGLMRAMA 172
Query: 315 EYFQRSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFW 374
+ + S + G + E L+ E+D I E NA + RR+ + VR+P + W
Sbjct: 173 GWVE-SLSADGKRLKPRQVVAEFDNYLHDELDLIREAANAAQLRRNMERLGLVRIPEILW 231
Query: 375 DYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGN 434
D+ +VL +E + GV I++++ L G + Q+A + + Q+ + GFFHAD HPGN
Sbjct: 232 DFCHPEVLVMERMKGVPISQIERLRAAGVDIRQLARDGVTIFFTQVFRDGFFHADMHPGN 291
Query: 435 LAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPT 490
+ V L+ I DFG++G + F +E L F A + +D K+V + + +E+
Sbjct: 292 IQVSLEPGSFGRYISLDFGIVGSLTEFDKEYLAQNFTAFFRRDYKRVAE--LHVESGWVP 349
Query: 491 GDM------SSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVI 544
D S++R + + D P ++ +L + LF ++ +
Sbjct: 350 ADTRINELESAIRAVCEPYFDR-----PLKEISLGMVLMRLFQTSRRFHVEIQPQLVLLQ 404
Query: 545 RAFSTLEGIGNILDPDFSFVKVAAPYAQELL 575
+ +EG+G LDP+ A P+ ++ +
Sbjct: 405 KTLLNIEGLGRQLDPELDLWSTAKPFLEKWM 435
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 199 bits (506), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 138/450 (30%), Positives = 220/450 (48%), Gaps = 22/450 (4%)
Query: 163 VLSLQIRILFDNAKWAYLGGFSEDKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSD 222
+L +R+L W +L + + R LR ++ LGP FIK GQ+ STR D
Sbjct: 30 MLPWWLRLLGATLPWRWLPRRKLELTRGAR------LRLALQDLGPIFIKFGQILSTRRD 83
Query: 223 LFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRA 282
L P + +ELA LQD+VP F PE A I+ +LGA IEQ+F FE P+A+AS+ QVH A
Sbjct: 84 LLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAA 143
Query: 283 ILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQRSETFGGPTRDWIGIYDECATILY 342
L +GE+VVVKV RP L+ + D+ L ++A +R + + + + +
Sbjct: 144 RLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEARRLHP-VEVVSDYEKTIV 202
Query: 343 QEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQG 402
E+D + E NA + RR+F + VP V+WD+ KVL +E + G+ + +L+ L Q
Sbjct: 203 DELDLLREAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQR 262
Query: 403 YNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVD----LDEALIYYDFGMMGEIKSFT 458
+ +A R +E + Q+ + FFHAD HPGN+ V I D G++G +
Sbjct: 263 TDFKALAERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDED 322
Query: 459 RERLLDLFYAVYEKDAKKVIQRLID---LEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQ 515
++ L A +++D +KV Q ID + A D + R+V + + P +
Sbjct: 323 QDYLARNLIAFFKRDYRKVAQLHIDSGWVPAETKVNDFEAAIRTVC----EPIFEKPLKD 378
Query: 516 QTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSFVKVAAPYAQ--- 572
+ + LF A+ + + +EG+G L P+ A P+ +
Sbjct: 379 ISFGQVLLRLFQTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLERWM 438
Query: 573 -ELLDLKQQQQSGTQLVEQIRKQADDARSS 601
E + KQ ++ Q VEQ+ + AR +
Sbjct: 439 RERVSPKQLLRNFQQQVEQVPHLSQMARDT 468
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 199 bits (505), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 138/450 (30%), Positives = 220/450 (48%), Gaps = 22/450 (4%)
Query: 163 VLSLQIRILFDNAKWAYLGGFSEDKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSD 222
+L +R+L W +L + + R LR ++ LGP FIK GQ+ STR D
Sbjct: 30 MLPWWLRLLGATLPWRWLPRRKLELTRGAR------LRLALQDLGPIFIKFGQILSTRRD 83
Query: 223 LFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRA 282
L P + +ELA LQD+VP F PE A I+ +LGA IEQ+F FE P+A+AS+ QVH A
Sbjct: 84 LLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAA 143
Query: 283 ILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQRSETFGGPTRDWIGIYDECATILY 342
L +GE+VVVKV RP L+ + D+ L ++A +R + + + + +
Sbjct: 144 RLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEARRLHP-VEVVSDYEKTIV 202
Query: 343 QEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQG 402
E+D + E NA + RR+F + VP V+WD+ KVL +E + G+ + +L+ L Q
Sbjct: 203 DELDLLREAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQR 262
Query: 403 YNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVD----LDEALIYYDFGMMGEIKSFT 458
+ +A R +E + Q+ + FFHAD HPGN+ V I D G++G +
Sbjct: 263 TDFKALAERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDED 322
Query: 459 RERLLDLFYAVYEKDAKKVIQRLID---LEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQ 515
++ L A +++D +KV Q ID + A D + R+V + + P +
Sbjct: 323 QDYLARNLIAFFKRDYRKVAQLHIDSGWVPAETKVNDFEAAIRTVC----EPIFEKPLKD 378
Query: 516 QTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSFVKVAAPYAQ--- 572
+ + LF A+ + + +EG+G L P+ A P+ +
Sbjct: 379 ISFGQVLLRLFQTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLERWM 438
Query: 573 -ELLDLKQQQQSGTQLVEQIRKQADDARSS 601
E + KQ ++ Q VEQ+ + AR +
Sbjct: 439 RERVSPKQLLRNFQQQVEQVPHLSQMARDT 468
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 251,963,016
Number of Sequences: 539616
Number of extensions: 10615236
Number of successful extensions: 31110
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 30380
Number of HSP's gapped (non-prelim): 254
length of query: 703
length of database: 191,569,459
effective HSP length: 125
effective length of query: 578
effective length of database: 124,117,459
effective search space: 71739891302
effective search space used: 71739891302
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)