BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005300
(703 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 22/115 (19%)
Query: 127 CGSHSPDSPLLLFLPGIDGVGVGLTRQHQRLGKIFDVWSLHIP-------------VKDR 173
C SP+ P++L + GI + GL Q L + + P V
Sbjct: 19 CSWGSPEHPVVLCIHGI--LEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLEMVTSY 76
Query: 174 TSFTGLVQLIERTIRSEHNHSPNKPIYLVGESLGACFALAVAARNPH--IDLVLV 226
+S T L Q I+R I+ P++P+ LVG S+GA A A+A+ P +L+LV
Sbjct: 77 SSLTFLAQ-IDRVIQ----ELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILV 126
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 174 TSFTGLVQLIERTIRSEHNHSPNKPIYLVGESLGACFALAVAARNP-HIDLV-----LVL 227
+ F V+ + + + S P P++L+G S+G A+ AA P H + LVL
Sbjct: 109 SDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVL 168
Query: 228 SNPATSFSMSVLQSTI 243
+NP ++ + VL + +
Sbjct: 169 ANPESATTFKVLAAKV 184
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 174 TSFTGLVQLIERTIRSEHNHSPNKPIYLVGESLGACFALAVAARNP-HIDLV-----LVL 227
+ F V+ + + + S P P++L+G S+G A+ AA P H + LVL
Sbjct: 108 SDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVL 167
Query: 228 SNPATSFSMSVLQSTI 243
+NP ++ + VL + +
Sbjct: 168 ANPESATTFKVLAAKV 183
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 80/197 (40%), Gaps = 21/197 (10%)
Query: 182 LIERTIRSEHNHSPNKPIYLVGESLGACFALAVAARNPHIDLVLVLSNPATSFSMSVLQS 241
L R ++S + I+L+G S+G ++A + P LVL T
Sbjct: 92 LNARILKSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTG-------- 143
Query: 242 TISLLEFIPGQMTLTLCHILSSMTGDPLKMAIDNVVKGISVPPTIQDLSTYL--SVLADI 299
+SL +P + L + T + LK+ +D V S DL+ L + L ++
Sbjct: 144 GMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTS------DLTDALFEARLNNM 197
Query: 300 LPN----ETLLWKLELLKSASAYANARLHSVKAQTLILYSGKDQMMPSEEEGQRLSRELP 355
L E + LE RL +KAQTLI++ D+ +P + G RL +
Sbjct: 198 LSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPM-DAGLRLLSGIA 256
Query: 356 NCQTRRFDDNGHFLLLE 372
+ F D GH+ E
Sbjct: 257 GSELHIFRDCGHWAQWE 273
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 174 TSFTGLVQLIERTIRSEHNHSPNKPIYLVGESLGACFALAVAARNP-HIDLV-----LVL 227
+ F V+ + + + S P P++L+G S+G A+ AA P H + LVL
Sbjct: 91 SDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVL 150
Query: 228 SNPATSFSMSVLQSTI 243
+NP ++ + VL + +
Sbjct: 151 ANPESATTFKVLAAKV 166
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 174 TSFTGLVQLIERTIRSEHNHSPNKPIYLVGESLGACFALAVAARNP-HID---LV--LVL 227
+ F V+ + + + S P P++L+G S G A+ AA P H L+ LVL
Sbjct: 108 SDFHVFVRDVLQHVDSXQKDYPGLPVFLLGHSXGGAIAILTAAERPGHFAGXVLISPLVL 167
Query: 228 SNPATSFSMSVLQSTI 243
+NP ++ + VL + +
Sbjct: 168 ANPESATTFKVLAAKV 183
>pdb|4AM3|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
pdb|4AM3|B Chain B, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
pdb|4AM3|C Chain C, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
Length = 717
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 624 KIPGRFYYYFGKPIETKGRKQELRDRKKSQKLYLQVKGEVENCIAYLKEKRQNDP 678
KIPG F+ G+P E + L DR K EV+ + L+ +NDP
Sbjct: 77 KIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLENDP 131
>pdb|4AIM|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
Length = 726
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 624 KIPGRFYYYFGKPIETKGRKQELRDRKKSQKLYLQVKGEVENCIAYLKEKRQNDP 678
KIPG F+ G+P E + L DR K EV+ + L+ +NDP
Sbjct: 86 KIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLENDP 140
>pdb|4AID|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
pdb|4AID|B Chain B, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
pdb|4AID|C Chain C, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
Length = 726
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 624 KIPGRFYYYFGKPIETKGRKQELRDRKKSQKLYLQVKGEVENCIAYLKEKRQNDP 678
KIPG F+ G+P E + L DR K EV+ + L+ +NDP
Sbjct: 86 KIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLENDP 140
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/45 (22%), Positives = 28/45 (62%)
Query: 330 TLILYSGKDQMMPSEEEGQRLSRELPNCQTRRFDDNGHFLLLEEG 374
TL+++ DQ++P + G++ ++ +PN + + ++ + H + + G
Sbjct: 215 TLVVHGDDDQVVPIDATGRKSAQIIPNAELKVYEGSSHGIAMVPG 259
>pdb|2XHY|A Chain A, Crystal Structure Of E.Coli Bgla
pdb|2XHY|B Chain B, Crystal Structure Of E.Coli Bgla
pdb|2XHY|C Chain C, Crystal Structure Of E.Coli Bgla
pdb|2XHY|D Chain D, Crystal Structure Of E.Coli Bgla
Length = 479
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 21/109 (19%)
Query: 503 VGGVPASAVNLYKLLSSKSHVMLHPGGMREALHRKGEEYK--LFWPESSEFVRMSSTFGA 560
+ G S N Y + +S + P G+R AL E Y+ LF E+ FGA
Sbjct: 332 ISGFEGSVPNPY-VKASDWGWQIDPVGLRYALCELYERYQRPLFIVENG--------FGA 382
Query: 561 KIIPFGAVGEDDIAQIVLDYNDQMKIPFLKSQIEEMNKRVVKLRTDITG 609
+ V ED ND +I +L++ IEEM K V D+ G
Sbjct: 383 ----YDKVEEDG------SINDDYRIDYLRAHIEEMKKAVTYDGVDLMG 421
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,778,161
Number of Sequences: 62578
Number of extensions: 821635
Number of successful extensions: 1749
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1741
Number of HSP's gapped (non-prelim): 14
length of query: 703
length of database: 14,973,337
effective HSP length: 106
effective length of query: 597
effective length of database: 8,340,069
effective search space: 4979021193
effective search space used: 4979021193
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)