Query 005302
Match_columns 703
No_of_seqs 314 out of 2768
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 21:19:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2274 SunT ABC-type bacterio 100.0 3E-108 7E-113 950.1 67.3 565 95-684 83-656 (709)
2 KOG0058 Peptide exporter, ABC 100.0 1E-108 2E-113 921.9 60.7 515 168-685 133-652 (716)
3 TIGR01193 bacteriocin_ABC ABC- 100.0 7.3E-98 2E-102 881.1 71.2 587 92-695 80-671 (708)
4 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.7E-97 6E-102 876.7 69.7 582 95-695 83-674 (710)
5 TIGR03375 type_I_sec_LssB type 100.0 2E-96 4E-101 867.0 71.8 582 97-695 72-662 (694)
6 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.8E-95 4E-100 857.8 71.9 562 95-684 69-635 (686)
7 TIGR01846 type_I_sec_HlyB type 100.0 1.5E-92 3.3E-97 833.8 71.9 577 97-695 71-654 (694)
8 TIGR02868 CydC thiol reductant 100.0 4.3E-89 9.3E-94 781.5 67.5 507 172-683 3-516 (529)
9 KOG0055 Multidrug/pheromone ex 100.0 2E-89 4.3E-94 804.2 63.8 522 170-695 652-1187(1228)
10 TIGR00958 3a01208 Conjugate Tr 100.0 4.9E-88 1.1E-92 796.3 69.9 547 145-694 122-675 (711)
11 PRK11174 cysteine/glutathione 100.0 6E-87 1.3E-91 772.9 70.6 509 169-683 9-531 (588)
12 PRK11176 lipid transporter ATP 100.0 8.9E-84 1.9E-88 745.6 71.8 529 164-695 7-541 (582)
13 COG1132 MdlB ABC-type multidru 100.0 5.9E-84 1.3E-88 744.9 67.8 507 170-684 4-512 (567)
14 PTZ00265 multidrug resistance 100.0 1.9E-83 4.1E-88 798.7 70.2 522 170-695 813-1421(1466)
15 TIGR02857 CydD thiol reductant 100.0 7.5E-83 1.6E-87 729.9 69.7 511 181-695 2-519 (529)
16 PRK11160 cysteine/glutathione 100.0 9.6E-83 2.1E-87 735.2 70.2 521 170-695 4-536 (574)
17 TIGR02203 MsbA_lipidA lipid A 100.0 1.1E-82 2.3E-87 734.8 69.0 510 171-683 3-515 (571)
18 PRK10790 putative multidrug tr 100.0 2.4E-81 5.1E-86 726.7 71.9 523 165-695 6-537 (592)
19 PRK13657 cyclic beta-1,2-gluca 100.0 2.5E-80 5.5E-85 717.5 72.6 511 168-683 5-517 (588)
20 KOG0055 Multidrug/pheromone ex 100.0 2.6E-83 5.5E-88 752.7 47.3 459 226-685 76-537 (1228)
21 TIGR02204 MsbA_rel ABC transpo 100.0 2.1E-80 4.6E-85 716.6 70.0 514 169-683 5-522 (576)
22 TIGR01192 chvA glucan exporter 100.0 5.2E-80 1.1E-84 713.6 72.6 523 167-694 4-531 (585)
23 PRK10789 putative multidrug tr 100.0 1.3E-78 2.8E-83 700.3 67.2 500 191-694 4-511 (569)
24 TIGR01842 type_I_sec_PrtD type 100.0 1.3E-77 2.8E-82 688.8 68.8 507 178-694 2-515 (544)
25 KOG0057 Mitochondrial Fe/S clu 100.0 3.7E-78 7.9E-83 655.7 52.0 494 183-682 31-532 (591)
26 TIGR00957 MRP_assoc_pro multi 100.0 3.8E-76 8.2E-81 739.7 67.8 489 189-683 972-1467(1522)
27 KOG0056 Heavy metal exporter H 100.0 2.2E-79 4.7E-84 651.2 32.1 497 191-694 224-734 (790)
28 PTZ00265 multidrug resistance 100.0 1.1E-75 2.4E-80 729.2 69.3 521 172-695 49-642 (1466)
29 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.1E-75 2.4E-80 673.9 62.5 511 169-694 4-532 (555)
30 COG4988 CydD ABC-type transpor 100.0 7.5E-75 1.6E-79 639.2 63.8 457 226-686 45-505 (559)
31 PLN03130 ABC transporter C fam 100.0 2E-74 4.3E-79 724.1 68.1 500 184-694 917-1434(1622)
32 PTZ00243 ABC transporter; Prov 100.0 6.4E-74 1.4E-78 718.4 68.7 459 233-694 1010-1506(1560)
33 PLN03232 ABC transporter C fam 100.0 7.8E-74 1.7E-78 717.9 66.4 452 226-683 955-1417(1495)
34 COG4987 CydC ABC-type transpor 100.0 2.4E-73 5.3E-78 617.8 57.5 499 180-683 14-520 (573)
35 COG4618 ArpD ABC-type protease 100.0 5.8E-74 1.2E-78 617.3 47.6 492 177-683 18-518 (580)
36 COG5265 ATM1 ABC-type transpor 100.0 3.6E-74 7.7E-79 606.9 34.7 443 241-686 2-448 (497)
37 TIGR01271 CFTR_protein cystic 100.0 9.5E-70 2.1E-74 680.2 68.3 455 233-694 937-1413(1490)
38 PRK10522 multidrug transporter 100.0 1E-68 2.3E-73 615.4 62.8 499 173-694 4-511 (547)
39 KOG0054 Multidrug resistance-a 100.0 1E-68 2.2E-73 643.0 56.2 489 188-682 823-1320(1381)
40 PLN03232 ABC transporter C fam 100.0 6.4E-67 1.4E-71 655.5 67.0 480 177-680 296-783 (1495)
41 PLN03130 ABC transporter C fam 100.0 4.2E-66 9.1E-71 648.9 67.6 480 176-682 295-786 (1622)
42 TIGR00954 3a01203 Peroxysomal 100.0 3.5E-66 7.6E-71 604.5 61.6 515 166-695 75-641 (659)
43 TIGR00957 MRP_assoc_pro multi 100.0 3E-60 6.4E-65 596.3 67.3 485 176-682 311-805 (1522)
44 TIGR01271 CFTR_protein cystic 100.0 6.7E-57 1.5E-61 564.5 66.7 494 177-694 75-609 (1490)
45 PTZ00243 ABC transporter; Prov 100.0 4.2E-55 9.2E-60 548.8 64.4 484 175-679 237-824 (1560)
46 KOG0054 Multidrug resistance-a 100.0 4.2E-55 9.1E-60 525.7 58.9 484 177-681 196-687 (1381)
47 COG4178 ABC-type uncharacteriz 100.0 8.8E-42 1.9E-46 383.0 55.1 449 216-682 81-560 (604)
48 cd03289 ABCC_CFTR2 The CFTR su 100.0 7E-44 1.5E-48 375.0 21.5 183 498-684 1-185 (275)
49 COG1117 PstB ABC-type phosphat 100.0 1.6E-43 3.5E-48 346.2 15.1 180 498-685 6-197 (253)
50 COG1126 GlnQ ABC-type polar am 100.0 2.2E-43 4.8E-48 346.7 15.9 175 499-685 2-184 (240)
51 COG4615 PvdE ABC-type sideroph 100.0 2.4E-39 5.1E-44 339.5 46.3 485 174-687 5-502 (546)
52 cd03244 ABCC_MRP_domain2 Domai 100.0 8.6E-42 1.9E-46 347.9 22.2 184 498-684 1-186 (221)
53 cd03252 ABCC_Hemolysin The ABC 100.0 1.1E-41 2.3E-46 350.9 21.1 194 500-695 1-199 (237)
54 COG1135 AbcC ABC-type metal io 100.0 2.9E-42 6.2E-47 354.6 16.2 177 500-685 2-189 (339)
55 cd03254 ABCC_Glucan_exporter_l 100.0 2.7E-41 5.9E-46 346.0 21.0 195 498-695 1-200 (229)
56 PRK14257 phosphate ABC transpo 100.0 2.2E-41 4.9E-46 364.7 20.8 181 496-684 77-272 (329)
57 cd03245 ABCC_bacteriocin_expor 100.0 5.6E-41 1.2E-45 341.6 22.0 196 498-695 1-201 (220)
58 cd03248 ABCC_TAP TAP, the Tran 100.0 6.7E-41 1.5E-45 342.6 21.0 199 496-695 8-211 (226)
59 cd03253 ABCC_ATM1_transporter 100.0 7.6E-41 1.7E-45 344.3 21.2 193 500-695 1-198 (236)
60 cd03251 ABCC_MsbA MsbA is an e 100.0 9.9E-41 2.2E-45 343.0 21.4 194 500-695 1-199 (234)
61 cd03288 ABCC_SUR2 The SUR doma 100.0 1.8E-40 3.9E-45 346.4 22.9 198 495-695 15-217 (257)
62 COG1120 FepC ABC-type cobalami 100.0 5.7E-41 1.2E-45 344.4 17.9 190 499-700 2-206 (258)
63 COG1116 TauB ABC-type nitrate/ 100.0 8.2E-41 1.8E-45 337.5 17.0 168 499-683 3-176 (248)
64 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.5E-40 5.4E-45 341.0 20.8 195 500-695 1-200 (238)
65 TIGR00960 3a0501s02 Type II (G 100.0 2.8E-40 6E-45 335.8 19.4 186 500-695 2-200 (216)
66 COG1125 OpuBA ABC-type proline 100.0 7.7E-41 1.7E-45 334.8 14.5 174 500-686 2-184 (309)
67 COG2884 FtsE Predicted ATPase 100.0 1E-40 2.2E-45 321.2 14.2 176 500-686 2-186 (223)
68 COG1136 SalX ABC-type antimicr 100.0 3.7E-40 8.1E-45 332.2 18.8 177 500-685 2-190 (226)
69 COG3839 MalK ABC-type sugar tr 100.0 2.7E-40 5.9E-45 351.4 18.1 174 499-686 3-182 (338)
70 cd03250 ABCC_MRP_domain1 Domai 100.0 9.4E-40 2E-44 329.1 20.5 180 500-694 1-189 (204)
71 TIGR02314 ABC_MetN D-methionin 100.0 1.2E-39 2.7E-44 352.3 20.3 187 500-695 2-203 (343)
72 cd03260 ABC_PstB_phosphate_tra 100.0 1.9E-39 4.1E-44 332.1 19.8 186 500-695 1-202 (227)
73 cd03290 ABCC_SUR1_N The SUR do 100.0 2.9E-39 6.3E-44 328.9 20.8 191 501-695 2-204 (218)
74 cd03261 ABC_Org_Solvent_Resist 100.0 4.3E-39 9.2E-44 331.3 20.8 184 500-695 1-199 (235)
75 cd03225 ABC_cobalt_CbiO_domain 100.0 3.9E-39 8.5E-44 326.0 18.9 187 501-697 1-198 (211)
76 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.1E-39 6.7E-44 330.0 18.2 172 499-685 4-187 (254)
77 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 4.1E-39 8.9E-44 327.5 19.0 188 500-696 1-204 (218)
78 COG3638 ABC-type phosphate/pho 100.0 2.9E-39 6.4E-44 321.4 17.3 186 499-695 3-210 (258)
79 TIGR02673 FtsE cell division A 100.0 7.5E-39 1.6E-43 324.6 20.5 186 500-696 2-200 (214)
80 PRK13650 cbiO cobalt transport 100.0 3.5E-39 7.5E-44 340.7 18.7 188 499-695 4-203 (279)
81 cd03226 ABC_cobalt_CbiO_domain 100.0 4.2E-39 9.2E-44 324.6 18.2 182 501-696 1-189 (205)
82 TIGR02211 LolD_lipo_ex lipopro 100.0 5.5E-39 1.2E-43 327.2 18.7 186 500-694 2-203 (221)
83 PRK13631 cbiO cobalt transport 100.0 2E-38 4.3E-43 340.7 23.8 191 499-696 21-239 (320)
84 PRK11629 lolD lipoprotein tran 100.0 7E-39 1.5E-43 329.4 19.5 188 499-695 5-208 (233)
85 cd03292 ABC_FtsE_transporter F 100.0 9.1E-39 2E-43 323.9 20.0 185 500-695 1-198 (214)
86 cd03259 ABC_Carb_Solutes_like 100.0 8.6E-39 1.9E-43 324.1 19.2 183 500-696 1-194 (213)
87 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.5E-38 3.3E-43 321.0 20.6 168 498-684 5-172 (207)
88 cd03266 ABC_NatA_sodium_export 100.0 1.8E-38 3.9E-43 322.8 20.5 186 500-695 2-198 (218)
89 cd03263 ABC_subfamily_A The AB 100.0 1.6E-38 3.4E-43 323.6 19.6 185 500-695 1-194 (220)
90 PRK13647 cbiO cobalt transport 100.0 2.1E-38 4.6E-43 333.8 21.1 186 499-695 4-200 (274)
91 COG1122 CbiO ABC-type cobalt t 100.0 1.4E-38 3.1E-43 325.7 19.1 189 499-698 3-204 (235)
92 PRK10908 cell division protein 100.0 2.6E-38 5.7E-43 322.7 20.6 187 500-697 2-201 (222)
93 PRK14269 phosphate ABC transpo 100.0 1.5E-38 3.2E-43 329.8 18.4 188 499-694 2-202 (246)
94 PRK11650 ugpC glycerol-3-phosp 100.0 1.5E-38 3.2E-43 346.2 19.3 183 499-694 3-196 (356)
95 TIGR02315 ABC_phnC phosphonate 100.0 3.3E-38 7.2E-43 326.0 20.8 186 500-696 2-209 (243)
96 COG3842 PotA ABC-type spermidi 100.0 5.3E-39 1.1E-43 343.3 15.0 175 498-686 4-185 (352)
97 cd03256 ABC_PhnC_transporter A 100.0 3.1E-38 6.8E-43 325.7 20.2 186 500-696 1-208 (241)
98 cd03264 ABC_drug_resistance_li 100.0 2.6E-38 5.6E-43 320.1 19.1 181 500-694 1-190 (211)
99 cd03235 ABC_Metallic_Cations A 100.0 1.6E-38 3.5E-43 322.1 17.6 180 501-697 1-196 (213)
100 PRK11153 metN DL-methionine tr 100.0 2.6E-38 5.6E-43 343.1 20.2 192 500-700 2-208 (343)
101 cd03268 ABC_BcrA_bacitracin_re 100.0 3.1E-38 6.7E-43 318.9 19.3 183 500-696 1-189 (208)
102 PRK13635 cbiO cobalt transport 100.0 2.4E-38 5.2E-43 334.3 18.8 187 499-695 5-203 (279)
103 cd03224 ABC_TM1139_LivF_branch 100.0 4.2E-38 9.2E-43 320.8 19.8 190 500-697 1-196 (222)
104 cd03301 ABC_MalK_N The N-termi 100.0 2E-38 4.4E-43 321.2 17.3 182 500-695 1-193 (213)
105 cd03219 ABC_Mj1267_LivG_branch 100.0 3.1E-38 6.6E-43 324.9 18.7 192 500-697 1-207 (236)
106 cd03231 ABC_CcmA_heme_exporter 100.0 4.8E-38 1E-42 316.3 19.6 170 500-683 1-171 (201)
107 cd03262 ABC_HisP_GlnQ_permease 100.0 4.1E-38 8.8E-43 318.9 19.2 185 500-696 1-198 (213)
108 PRK13632 cbiO cobalt transport 100.0 3.9E-38 8.4E-43 331.3 19.6 187 499-695 7-205 (271)
109 COG3840 ThiQ ABC-type thiamine 100.0 1.8E-38 3.9E-43 303.4 15.3 170 500-685 2-177 (231)
110 cd03293 ABC_NrtD_SsuB_transpor 100.0 4.2E-38 9.1E-43 320.8 19.0 183 500-696 1-195 (220)
111 PRK10584 putative ABC transpor 100.0 6.5E-38 1.4E-42 321.0 19.9 188 499-695 6-209 (228)
112 PRK14250 phosphate ABC transpo 100.0 1.5E-37 3.2E-42 321.3 22.6 185 499-695 3-194 (241)
113 cd03296 ABC_CysA_sulfate_impor 100.0 7.8E-38 1.7E-42 322.9 20.1 183 499-695 2-199 (239)
114 PRK13637 cbiO cobalt transport 100.0 9.4E-38 2E-42 331.0 21.0 188 499-695 2-207 (287)
115 PRK11432 fbpC ferric transport 100.0 4.4E-38 9.5E-43 341.6 18.7 171 499-683 6-182 (351)
116 PRK14242 phosphate transporter 100.0 7.2E-38 1.6E-42 325.7 19.6 187 499-695 6-210 (253)
117 PRK13643 cbiO cobalt transport 100.0 9.6E-38 2.1E-42 331.1 20.7 187 500-695 2-206 (288)
118 PRK11247 ssuB aliphatic sulfon 100.0 1.4E-37 3.1E-42 324.5 21.6 180 499-696 12-197 (257)
119 TIGR00972 3a0107s01c2 phosphat 100.0 9.6E-38 2.1E-42 323.7 20.2 190 500-697 2-207 (247)
120 PRK10744 pstB phosphate transp 100.0 1.1E-37 2.5E-42 325.8 20.8 189 497-695 11-217 (260)
121 PRK14273 phosphate ABC transpo 100.0 8.2E-38 1.8E-42 325.6 19.6 189 499-695 7-211 (254)
122 cd03246 ABCC_Protease_Secretio 100.0 6.8E-38 1.5E-42 307.8 17.7 154 500-695 1-158 (173)
123 TIGR01189 ccmA heme ABC export 100.0 6.7E-38 1.4E-42 314.3 18.0 171 500-683 1-173 (198)
124 cd03258 ABC_MetN_methionine_tr 100.0 5.8E-38 1.2E-42 322.4 17.9 187 500-695 2-203 (233)
125 PRK13540 cytochrome c biogenes 100.0 1E-37 2.2E-42 313.6 19.3 171 500-683 2-173 (200)
126 PRK11124 artP arginine transpo 100.0 7.3E-38 1.6E-42 323.6 18.1 185 499-695 2-203 (242)
127 PRK13646 cbiO cobalt transport 100.0 1.3E-37 2.7E-42 330.0 20.4 190 499-695 2-208 (286)
128 PRK09536 btuD corrinoid ABC tr 100.0 1.3E-37 2.8E-42 342.4 21.1 190 499-700 3-206 (402)
129 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.3E-37 2.7E-42 321.9 19.7 186 500-696 1-199 (242)
130 PRK13642 cbiO cobalt transport 100.0 1.2E-37 2.6E-42 328.6 19.8 188 499-695 4-203 (277)
131 TIGR03608 L_ocin_972_ABC putat 100.0 6.6E-38 1.4E-42 315.7 17.0 181 502-694 1-195 (206)
132 PRK13634 cbiO cobalt transport 100.0 7E-38 1.5E-42 332.5 18.0 189 499-695 2-208 (290)
133 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.4E-37 2.9E-42 314.9 19.0 180 500-695 1-191 (211)
134 PRK10247 putative ABC transpor 100.0 1.7E-37 3.7E-42 317.6 19.8 184 499-695 7-200 (225)
135 cd03265 ABC_DrrA DrrA is the A 100.0 2.3E-37 5E-42 315.4 20.7 183 500-695 1-194 (220)
136 cd03294 ABC_Pro_Gly_Bertaine T 100.0 9.7E-38 2.1E-42 328.0 18.3 183 501-695 26-223 (269)
137 cd03291 ABCC_CFTR1 The CFTR su 100.0 4.5E-37 9.7E-42 324.5 23.3 201 472-695 15-221 (282)
138 PRK14235 phosphate transporter 100.0 1.8E-37 4E-42 325.5 20.1 192 497-696 17-225 (267)
139 PRK13652 cbiO cobalt transport 100.0 1.5E-37 3.2E-42 327.9 19.5 185 500-695 4-200 (277)
140 PRK10575 iron-hydroxamate tran 100.0 2.4E-37 5.3E-42 324.2 20.9 185 499-695 11-210 (265)
141 cd03247 ABCC_cytochrome_bd The 100.0 8.9E-38 1.9E-42 308.3 16.5 156 500-695 1-159 (178)
142 cd03218 ABC_YhbG The ABC trans 100.0 1.3E-37 2.8E-42 319.4 18.3 186 500-695 1-195 (232)
143 TIGR02982 heterocyst_DevA ABC 100.0 1.7E-37 3.7E-42 316.4 18.8 186 500-694 2-203 (220)
144 TIGR03005 ectoine_ehuA ectoine 100.0 1.5E-37 3.2E-42 323.3 18.3 183 500-694 1-208 (252)
145 COG1127 Ttg2A ABC-type transpo 100.0 1.1E-37 2.3E-42 311.0 16.1 177 498-686 7-194 (263)
146 TIGR03265 PhnT2 putative 2-ami 100.0 1.3E-37 2.9E-42 338.3 18.4 182 499-694 4-196 (353)
147 PRK13636 cbiO cobalt transport 100.0 3.7E-37 8E-42 325.9 21.1 186 499-695 5-204 (283)
148 PRK13538 cytochrome c biogenes 100.0 3.3E-37 7.2E-42 310.8 19.9 183 500-695 2-191 (204)
149 PRK09452 potA putrescine/sperm 100.0 1.6E-37 3.4E-42 339.7 18.7 172 499-684 14-191 (375)
150 cd03269 ABC_putative_ATPase Th 100.0 2.4E-37 5.3E-42 312.8 18.8 180 500-695 1-190 (210)
151 PRK10851 sulfate/thiosulfate t 100.0 1.6E-37 3.5E-42 337.6 18.7 182 499-694 2-198 (353)
152 PRK14259 phosphate ABC transpo 100.0 5.2E-37 1.1E-41 322.4 21.9 193 498-700 12-220 (269)
153 PRK11231 fecE iron-dicitrate t 100.0 3.9E-37 8.4E-42 320.8 20.7 184 500-695 3-200 (255)
154 PRK13644 cbiO cobalt transport 100.0 2.3E-37 5.1E-42 325.9 19.1 185 500-695 2-198 (274)
155 PRK13640 cbiO cobalt transport 100.0 2.9E-37 6.3E-42 326.5 19.7 188 499-696 5-207 (282)
156 PRK11000 maltose/maltodextrin 100.0 1.8E-37 3.9E-42 339.5 18.7 183 499-695 3-196 (369)
157 COG4619 ABC-type uncharacteriz 100.0 4.4E-38 9.6E-43 296.9 11.8 169 502-683 6-179 (223)
158 TIGR01186 proV glycine betaine 100.0 7.8E-38 1.7E-42 340.2 15.5 172 515-695 6-192 (363)
159 PRK09493 glnQ glutamine ABC tr 100.0 3.9E-37 8.5E-42 317.7 19.9 184 500-695 2-198 (240)
160 PRK14247 phosphate ABC transpo 100.0 3.1E-37 6.8E-42 320.4 19.2 189 499-695 3-207 (250)
161 PRK14267 phosphate ABC transpo 100.0 2.7E-37 5.8E-42 321.4 18.7 189 499-695 4-210 (253)
162 cd03257 ABC_NikE_OppD_transpor 100.0 9.3E-37 2E-41 312.0 22.0 190 500-696 2-209 (228)
163 PRK13638 cbiO cobalt transport 100.0 4.4E-37 9.5E-42 323.3 20.0 189 500-700 2-203 (271)
164 KOG0060 Long-chain acyl-CoA tr 100.0 2.5E-34 5.4E-39 314.5 42.1 460 216-687 117-620 (659)
165 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3.3E-37 7.2E-42 317.6 18.6 185 500-695 2-195 (236)
166 PRK13633 cobalt transporter AT 100.0 3.1E-37 6.6E-42 326.0 18.7 188 499-695 4-207 (280)
167 PRK11614 livF leucine/isoleuci 100.0 2.6E-37 5.6E-42 318.5 17.6 187 499-694 5-198 (237)
168 PRK11831 putative ABC transpor 100.0 5.2E-37 1.1E-41 322.4 20.3 185 499-695 7-206 (269)
169 PRK13548 hmuV hemin importer A 100.0 8.1E-37 1.7E-41 319.1 21.5 185 500-696 3-204 (258)
170 PRK14240 phosphate transporter 100.0 5.7E-37 1.2E-41 318.4 20.3 189 498-694 2-206 (250)
171 PRK14237 phosphate transporter 100.0 5E-37 1.1E-41 322.3 19.9 189 497-695 18-224 (267)
172 TIGR01277 thiQ thiamine ABC tr 100.0 4.3E-37 9.4E-42 311.9 18.6 180 500-695 1-191 (213)
173 TIGR03411 urea_trans_UrtD urea 100.0 7.2E-37 1.6E-41 316.0 20.6 182 500-695 3-204 (242)
174 TIGR01166 cbiO cobalt transpor 100.0 2.6E-37 5.7E-42 307.9 16.5 160 515-683 5-173 (190)
175 PRK13649 cbiO cobalt transport 100.0 7.3E-37 1.6E-41 323.0 20.7 189 500-696 3-208 (280)
176 PRK13651 cobalt transporter AT 100.0 6.4E-37 1.4E-41 327.0 20.4 187 499-694 2-226 (305)
177 TIGR03258 PhnT 2-aminoethylpho 100.0 2.6E-37 5.6E-42 336.7 17.6 173 497-683 3-183 (362)
178 PRK13648 cbiO cobalt transport 100.0 4.4E-37 9.5E-42 322.9 18.7 186 499-694 7-204 (269)
179 PRK14249 phosphate ABC transpo 100.0 1.1E-36 2.3E-41 316.7 21.2 188 499-696 4-209 (251)
180 cd03230 ABC_DR_subfamily_A Thi 100.0 8.4E-37 1.8E-41 300.1 19.3 153 500-696 1-158 (173)
181 PRK14236 phosphate transporter 100.0 9E-37 2E-41 321.1 20.9 189 497-695 23-229 (272)
182 PRK11300 livG leucine/isoleuci 100.0 1.2E-36 2.5E-41 316.9 21.2 194 499-700 5-221 (255)
183 TIGR03873 F420-0_ABC_ATP propo 100.0 1E-36 2.2E-41 317.8 20.8 186 500-697 2-201 (256)
184 PRK14248 phosphate ABC transpo 100.0 7.2E-37 1.6E-41 321.1 19.7 191 499-697 21-227 (268)
185 cd03233 ABC_PDR_domain1 The pl 100.0 4.2E-37 9E-42 309.8 17.0 157 499-683 3-164 (202)
186 PRK11264 putative amino-acid A 100.0 4.5E-37 9.7E-42 319.1 17.7 186 500-695 4-206 (250)
187 TIGR03410 urea_trans_UrtE urea 100.0 1.7E-36 3.7E-41 310.9 21.6 183 500-695 1-194 (230)
188 cd03229 ABC_Class3 This class 100.0 1.1E-36 2.5E-41 300.5 19.3 155 500-695 1-163 (178)
189 PRK14254 phosphate ABC transpo 100.0 1.6E-36 3.5E-41 321.3 21.6 191 498-696 38-242 (285)
190 PRK10253 iron-enterobactin tra 100.0 1.1E-36 2.4E-41 319.2 20.0 186 498-695 6-206 (265)
191 PRK13539 cytochrome c biogenes 100.0 8.7E-37 1.9E-41 308.5 18.4 169 500-683 3-173 (207)
192 PRK14239 phosphate transporter 100.0 1.2E-36 2.6E-41 316.2 20.0 187 499-695 5-209 (252)
193 PRK14251 phosphate ABC transpo 100.0 7.2E-37 1.5E-41 317.9 18.3 189 499-695 4-208 (251)
194 PRK11607 potG putrescine trans 100.0 6.6E-37 1.4E-41 335.2 18.9 172 498-683 18-195 (377)
195 PRK11248 tauB taurine transpor 100.0 1.6E-36 3.5E-41 316.3 20.7 180 500-696 2-192 (255)
196 PRK13645 cbiO cobalt transport 100.0 1.6E-36 3.4E-41 322.0 21.0 191 497-695 4-213 (289)
197 cd03234 ABCG_White The White s 100.0 3.7E-37 7.9E-42 315.2 15.2 188 500-693 4-203 (226)
198 PRK14274 phosphate ABC transpo 100.0 1.3E-36 2.9E-41 317.5 19.7 188 499-694 12-215 (259)
199 PRK10895 lipopolysaccharide AB 100.0 7.2E-37 1.6E-41 316.0 17.5 186 499-694 3-198 (241)
200 TIGR02769 nickel_nikE nickel i 100.0 9.2E-37 2E-41 319.8 18.5 188 500-695 3-213 (265)
201 PRK10619 histidine/lysine/argi 100.0 1.8E-36 3.9E-41 316.1 20.4 188 498-696 4-215 (257)
202 PRK14243 phosphate transporter 100.0 1.8E-36 3.9E-41 317.5 20.5 191 499-697 10-214 (264)
203 PRK14260 phosphate ABC transpo 100.0 1.4E-36 3E-41 317.4 19.6 190 498-695 6-211 (259)
204 PRK15079 oligopeptide ABC tran 100.0 1.5E-36 3.4E-41 327.4 20.5 190 499-696 8-225 (331)
205 cd03300 ABC_PotA_N PotA is an 100.0 5.1E-37 1.1E-41 315.5 15.9 182 500-695 1-193 (232)
206 PRK14253 phosphate ABC transpo 100.0 1.5E-36 3.3E-41 315.1 19.5 189 499-695 3-206 (249)
207 TIGR01288 nodI ATP-binding ABC 100.0 1.7E-36 3.8E-41 323.8 20.3 185 499-696 4-198 (303)
208 PRK14256 phosphate ABC transpo 100.0 2.4E-36 5.1E-41 314.3 20.6 190 498-695 3-209 (252)
209 PRK13641 cbiO cobalt transport 100.0 2.1E-36 4.5E-41 320.8 20.5 188 499-695 2-207 (287)
210 PRK14262 phosphate ABC transpo 100.0 1.5E-36 3.3E-41 315.2 19.1 187 499-695 3-207 (250)
211 PRK14245 phosphate ABC transpo 100.0 1.4E-36 3.1E-41 315.5 18.8 187 499-695 3-207 (250)
212 PRK10771 thiQ thiamine transpo 100.0 2.1E-36 4.5E-41 310.9 19.8 180 500-695 2-192 (232)
213 PRK14261 phosphate ABC transpo 100.0 1.2E-36 2.7E-41 316.6 18.3 186 499-694 6-209 (253)
214 cd03228 ABCC_MRP_Like The MRP 100.0 1.4E-36 3.1E-41 297.9 17.7 153 500-694 1-156 (171)
215 COG1124 DppF ABC-type dipeptid 100.0 8.6E-37 1.9E-41 305.9 15.9 176 499-684 3-188 (252)
216 TIGR00968 3a0106s01 sulfate AB 100.0 1.9E-36 4.2E-41 312.3 19.1 181 500-694 1-192 (237)
217 PRK14268 phosphate ABC transpo 100.0 1.7E-36 3.7E-41 316.6 18.9 190 499-696 12-216 (258)
218 cd03223 ABCD_peroxisomal_ALDP 100.0 1.8E-36 4E-41 295.9 17.9 148 500-694 1-149 (166)
219 PRK13537 nodulation ABC transp 100.0 2.3E-36 4.9E-41 323.1 19.8 185 499-696 7-201 (306)
220 PRK14270 phosphate ABC transpo 100.0 3.4E-36 7.4E-41 312.9 20.3 188 499-694 4-207 (251)
221 TIGR01978 sufC FeS assembly AT 100.0 2.8E-36 6E-41 311.6 19.5 188 500-697 1-208 (243)
222 PRK14241 phosphate transporter 100.0 2.5E-36 5.3E-41 315.3 19.2 189 499-695 4-209 (258)
223 PRK13639 cbiO cobalt transport 100.0 3.3E-36 7.1E-41 317.4 20.3 185 500-695 2-199 (275)
224 PRK10070 glycine betaine trans 100.0 2.1E-36 4.6E-41 332.6 19.5 173 516-697 42-229 (400)
225 PRK14271 phosphate ABC transpo 100.0 6.4E-36 1.4E-40 315.3 21.6 187 499-695 21-224 (276)
226 PRK14238 phosphate transporter 100.0 3.8E-36 8.3E-41 316.2 19.8 187 499-695 24-228 (271)
227 PRK14244 phosphate ABC transpo 100.0 1.9E-36 4E-41 314.9 17.2 185 500-694 6-209 (251)
228 PRK14265 phosphate ABC transpo 100.0 6.5E-36 1.4E-40 315.0 21.4 191 499-697 20-224 (274)
229 PRK14255 phosphate ABC transpo 100.0 3.5E-36 7.6E-41 312.9 19.1 189 499-695 5-209 (252)
230 PRK14266 phosphate ABC transpo 100.0 5E-36 1.1E-40 311.4 19.4 188 499-694 3-206 (250)
231 PRK14275 phosphate ABC transpo 100.0 4.7E-36 1E-40 317.9 19.6 190 499-696 39-244 (286)
232 PRK13543 cytochrome c biogenes 100.0 6.9E-36 1.5E-40 303.5 19.8 181 499-694 11-198 (214)
233 PRK13541 cytochrome c biogenes 100.0 4.5E-36 9.9E-41 300.4 17.7 166 500-682 2-168 (195)
234 PRK09984 phosphonate/organopho 100.0 9.7E-36 2.1E-40 311.5 20.7 186 499-696 4-216 (262)
235 PRK15112 antimicrobial peptide 100.0 1.2E-35 2.6E-40 311.8 21.4 189 499-696 4-213 (267)
236 PRK14258 phosphate ABC transpo 100.0 9.2E-36 2E-40 311.6 20.4 190 498-695 6-213 (261)
237 TIGR03522 GldA_ABC_ATP gliding 100.0 8E-36 1.7E-40 318.4 20.3 183 500-695 3-194 (301)
238 PRK14264 phosphate ABC transpo 100.0 9.2E-36 2E-40 318.4 20.4 188 498-695 44-261 (305)
239 PRK11144 modC molybdate transp 100.0 9.3E-36 2E-40 324.3 20.5 180 500-695 2-191 (352)
240 PRK13547 hmuV hemin importer A 100.0 8.2E-36 1.8E-40 313.7 19.3 182 500-695 2-217 (272)
241 cd03215 ABC_Carb_Monos_II This 100.0 9.5E-36 2.1E-40 295.0 18.7 155 499-696 4-167 (182)
242 PRK11308 dppF dipeptide transp 100.0 7.3E-36 1.6E-40 321.8 19.1 190 499-696 5-218 (327)
243 TIGR02324 CP_lyasePhnL phospho 100.0 1.4E-35 3.1E-40 302.9 20.0 189 500-696 2-212 (224)
244 PRK14252 phosphate ABC transpo 100.0 1.2E-35 2.7E-40 311.2 20.1 188 497-694 14-221 (265)
245 cd03299 ABC_ModC_like Archeal 100.0 7.7E-36 1.7E-40 307.4 18.2 180 500-694 1-191 (235)
246 PRK14263 phosphate ABC transpo 100.0 1.4E-35 2.9E-40 310.4 19.9 189 499-695 8-210 (261)
247 PRK14272 phosphate ABC transpo 100.0 1.4E-35 3.1E-40 308.2 19.2 188 499-694 4-208 (252)
248 PRK13536 nodulation factor exp 100.0 1.6E-35 3.4E-40 320.5 20.2 189 499-696 41-235 (340)
249 TIGR03740 galliderm_ABC gallid 100.0 1.7E-35 3.7E-40 302.2 19.1 181 500-696 1-187 (223)
250 TIGR01188 drrA daunorubicin re 100.0 1E-35 2.2E-40 317.7 17.9 180 508-700 2-191 (302)
251 PRK15056 manganese/iron transp 100.0 3E-35 6.5E-40 309.6 20.7 183 499-695 6-204 (272)
252 cd03213 ABCG_EPDR ABCG transpo 100.0 1.2E-35 2.6E-40 297.4 16.3 159 499-693 3-171 (194)
253 PRK11022 dppD dipeptide transp 100.0 1.6E-35 3.5E-40 319.1 18.2 191 499-695 3-216 (326)
254 cd03232 ABC_PDR_domain2 The pl 100.0 1.1E-35 2.4E-40 297.0 15.8 159 499-694 3-169 (192)
255 COG1118 CysA ABC-type sulfate/ 100.0 5.6E-36 1.2E-40 307.4 13.4 174 499-686 2-186 (345)
256 PRK14246 phosphate ABC transpo 100.0 2.7E-35 6E-40 307.4 18.6 189 499-695 10-214 (257)
257 PRK09580 sufC cysteine desulfu 100.0 1.7E-35 3.7E-40 306.7 16.9 189 500-696 2-208 (248)
258 cd03297 ABC_ModC_molybdenum_tr 100.0 4.5E-35 9.7E-40 297.3 19.3 179 501-696 3-195 (214)
259 PRK11701 phnK phosphonate C-P 100.0 4.4E-35 9.4E-40 305.9 19.6 188 499-695 6-214 (258)
260 PRK10419 nikE nickel transport 100.0 2.1E-35 4.5E-40 310.2 17.1 190 499-695 3-214 (268)
261 TIGR02142 modC_ABC molybdenum 100.0 4.9E-35 1.1E-39 318.9 19.8 178 504-696 4-195 (354)
262 TIGR03415 ABC_choXWV_ATP choli 100.0 4E-35 8.7E-40 320.5 18.7 181 504-696 29-228 (382)
263 PRK10418 nikD nickel transport 100.0 6.3E-35 1.4E-39 304.0 19.3 187 499-700 4-208 (254)
264 PRK09544 znuC high-affinity zi 100.0 6.5E-35 1.4E-39 303.5 19.1 173 499-696 4-184 (251)
265 PRK15093 antimicrobial peptide 100.0 7.1E-35 1.5E-39 314.8 19.6 190 499-697 3-223 (330)
266 PRK09473 oppD oligopeptide tra 100.0 8.6E-35 1.9E-39 313.8 19.8 190 499-696 12-225 (330)
267 CHL00131 ycf16 sulfate ABC tra 100.0 1.7E-34 3.7E-39 300.1 20.5 188 499-696 7-214 (252)
268 TIGR02323 CP_lyasePhnK phospho 100.0 9.5E-35 2.1E-39 302.3 18.3 188 499-695 3-211 (253)
269 COG1131 CcmA ABC-type multidru 100.0 1.1E-34 2.3E-39 308.1 18.9 190 499-700 4-204 (293)
270 cd03214 ABC_Iron-Siderophores_ 100.0 1.2E-34 2.7E-39 286.5 16.3 156 501-696 1-161 (180)
271 cd03216 ABC_Carb_Monos_I This 100.0 1.6E-34 3.4E-39 281.4 16.6 138 500-694 1-143 (163)
272 PRK15439 autoinducer 2 ABC tra 100.0 3.4E-34 7.4E-39 326.9 21.9 190 499-700 11-207 (510)
273 PRK13549 xylose transporter AT 100.0 1.8E-34 3.9E-39 329.0 18.8 191 499-699 5-209 (506)
274 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.5E-34 5.5E-39 289.1 17.4 158 500-695 1-166 (200)
275 PRK09700 D-allose transporter 100.0 2.5E-34 5.5E-39 328.1 19.0 187 499-697 5-209 (510)
276 PRK11288 araG L-arabinose tran 100.0 6.1E-34 1.3E-38 324.2 21.2 188 499-696 4-203 (501)
277 PRK10762 D-ribose transporter 100.0 3.1E-34 6.6E-39 326.7 18.6 192 499-700 4-208 (501)
278 cd03267 ABC_NatA_like Similar 100.0 4.6E-34 9.9E-39 294.5 17.8 171 515-695 34-216 (236)
279 TIGR01184 ntrCD nitrate transp 100.0 1E-33 2.2E-38 290.8 18.7 166 518-697 1-179 (230)
280 PRK10982 galactose/methyl gala 100.0 1.2E-33 2.6E-38 321.1 20.0 189 502-700 1-201 (491)
281 PRK03695 vitamin B12-transport 100.0 1.6E-33 3.5E-38 292.5 19.2 180 500-696 1-196 (248)
282 PRK10938 putative molybdenum t 100.0 1.6E-33 3.4E-38 320.1 19.8 182 500-696 4-198 (490)
283 PRK10261 glutathione transport 100.0 2.8E-33 6.1E-38 326.1 21.4 193 499-700 313-531 (623)
284 TIGR02633 xylG D-xylose ABC tr 100.0 2E-33 4.4E-38 319.9 19.1 187 500-696 2-204 (500)
285 PLN03211 ABC transporter G-25; 100.0 4E-33 8.7E-38 325.3 19.4 171 515-694 81-267 (659)
286 TIGR02770 nickel_nikD nickel i 100.0 2.2E-33 4.8E-38 288.1 15.1 169 517-695 1-188 (230)
287 PRK10261 glutathione transport 100.0 4.8E-33 1E-37 324.2 18.9 194 499-700 12-236 (623)
288 PRK10535 macrolide transporter 100.0 7.2E-33 1.6E-37 323.9 20.0 187 499-694 4-205 (648)
289 PF00005 ABC_tran: ABC transpo 100.0 1.7E-33 3.7E-38 264.9 11.8 134 518-666 1-137 (137)
290 TIGR00955 3a01204 The Eye Pigm 100.0 1.1E-33 2.4E-38 329.1 12.9 187 499-694 17-227 (617)
291 PRK15134 microcin C ABC transp 100.0 9.8E-33 2.1E-37 316.3 20.5 192 499-696 5-220 (529)
292 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 6.6E-33 1.4E-37 283.7 17.0 174 500-696 23-205 (224)
293 COG4525 TauB ABC-type taurine 100.0 1.5E-33 3.2E-38 272.3 11.4 168 500-682 4-177 (259)
294 PRK15134 microcin C ABC transp 100.0 5.5E-33 1.2E-37 318.4 18.0 189 499-697 275-490 (529)
295 PRK09700 D-allose transporter 100.0 5.9E-33 1.3E-37 316.9 17.6 185 499-695 265-471 (510)
296 PRK13549 xylose transporter AT 100.0 3.9E-33 8.4E-38 318.0 15.7 190 499-695 259-467 (506)
297 COG4181 Predicted ABC-type tra 100.0 8.1E-33 1.8E-37 262.1 14.3 178 499-685 6-194 (228)
298 TIGR03269 met_CoM_red_A2 methy 100.0 1.5E-32 3.3E-37 314.2 19.4 193 499-697 279-492 (520)
299 TIGR03269 met_CoM_red_A2 methy 100.0 1.3E-32 2.8E-37 314.7 18.4 185 500-696 1-232 (520)
300 TIGR03771 anch_rpt_ABC anchore 100.0 1.5E-32 3.3E-37 280.7 16.1 159 523-695 1-175 (223)
301 COG1123 ATPase components of v 100.0 1.3E-32 2.9E-37 305.6 16.3 179 499-686 280-478 (539)
302 COG0410 LivF ABC-type branched 100.0 2.3E-32 4.9E-37 272.3 15.9 178 499-685 3-184 (237)
303 TIGR02633 xylG D-xylose ABC tr 100.0 1.8E-32 3.8E-37 312.2 17.2 200 499-700 257-470 (500)
304 COG4555 NatA ABC-type Na+ tran 100.0 9.2E-33 2E-37 268.3 11.4 186 500-694 2-194 (245)
305 TIGR01257 rim_protein retinal- 100.0 6.8E-32 1.5E-36 338.4 21.9 188 498-696 927-1123(2272)
306 cd03237 ABC_RNaseL_inhibitor_d 100.0 5.3E-32 1.2E-36 280.8 17.4 167 507-696 1-179 (246)
307 cd03236 ABC_RNaseL_inhibitor_d 100.0 4.2E-32 9.2E-37 282.9 15.0 181 503-695 4-201 (255)
308 PRK15064 ABC transporter ATP-b 100.0 1.7E-31 3.7E-36 306.2 21.4 179 499-700 319-502 (530)
309 COG4559 ABC-type hemin transpo 100.0 1.2E-31 2.6E-36 262.5 17.0 187 500-698 2-206 (259)
310 PRK11819 putative ABC transpor 100.0 1.1E-31 2.5E-36 309.1 19.9 181 499-695 6-222 (556)
311 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.1E-31 2.3E-36 256.3 16.2 127 500-694 1-128 (144)
312 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.8E-31 3.9E-36 307.4 21.1 183 499-696 4-221 (552)
313 TIGR00956 3a01205 Pleiotropic 100.0 8.2E-32 1.8E-36 336.3 19.1 186 499-695 759-964 (1394)
314 PRK13545 tagH teichoic acids e 100.0 2E-31 4.3E-36 297.3 20.1 176 499-696 21-206 (549)
315 COG4608 AppF ABC-type oligopep 100.0 4.2E-32 9.2E-37 277.6 13.2 148 499-686 4-158 (268)
316 PRK15064 ABC transporter ATP-b 100.0 1.7E-31 3.6E-36 306.2 19.6 182 500-697 2-216 (530)
317 COG4175 ProV ABC-type proline/ 100.0 2.4E-32 5.3E-37 280.9 11.2 179 499-686 4-213 (386)
318 PRK10762 D-ribose transporter 100.0 8.7E-32 1.9E-36 306.6 16.3 183 499-696 257-458 (501)
319 PRK13546 teichoic acids export 100.0 3.7E-31 8.1E-36 277.2 19.0 175 499-695 4-205 (264)
320 PRK10938 putative molybdenum t 100.0 8.5E-32 1.8E-36 305.9 15.1 185 499-695 260-464 (490)
321 PRK11288 araG L-arabinose tran 100.0 1.5E-31 3.2E-36 304.7 16.3 184 499-696 257-459 (501)
322 COG4598 HisP ABC-type histidin 100.0 5.5E-32 1.2E-36 258.1 9.8 174 499-684 6-199 (256)
323 COG1129 MglA ABC-type sugar tr 100.0 3.7E-31 8E-36 292.4 16.9 178 499-686 8-194 (500)
324 TIGR01257 rim_protein retinal- 100.0 8.4E-31 1.8E-35 328.6 21.3 189 498-697 1936-2134(2272)
325 COG1123 ATPase components of v 100.0 4.5E-31 9.8E-36 293.4 16.0 179 499-684 5-201 (539)
326 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2E-30 4.4E-35 250.5 17.6 139 501-696 1-143 (157)
327 COG4148 ModC ABC-type molybdat 100.0 4E-31 8.7E-36 267.8 11.7 159 519-687 15-178 (352)
328 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.4E-30 7.5E-35 296.7 21.0 177 499-697 322-504 (552)
329 PRK11819 putative ABC transpor 100.0 4.3E-30 9.3E-35 296.1 21.1 176 499-696 324-505 (556)
330 PLN03140 ABC transporter G fam 100.0 3.1E-30 6.7E-35 321.5 21.2 188 498-695 866-1081(1470)
331 PRK10982 galactose/methyl gala 100.0 2E-30 4.4E-35 294.7 17.7 191 499-700 250-458 (491)
332 COG0444 DppD ABC-type dipeptid 100.0 1.1E-30 2.5E-35 272.4 14.0 177 500-685 2-201 (316)
333 PRK15439 autoinducer 2 ABC tra 100.0 1.8E-30 3.8E-35 296.4 16.7 182 499-695 268-465 (510)
334 PRK11147 ABC transporter ATPas 100.0 6.2E-30 1.4E-34 298.8 20.9 174 499-695 319-499 (635)
335 COG0411 LivG ABC-type branched 100.0 7.5E-31 1.6E-35 263.3 11.2 172 500-685 5-197 (250)
336 COG1137 YhbG ABC-type (unclass 100.0 2.3E-31 4.9E-36 258.4 6.4 181 498-685 3-187 (243)
337 PRK15177 Vi polysaccharide exp 100.0 4E-30 8.7E-35 261.2 15.7 159 517-696 2-166 (213)
338 PRK13409 putative ATPase RIL; 100.0 8.9E-30 1.9E-34 293.8 19.9 170 499-695 340-516 (590)
339 cd03222 ABC_RNaseL_inhibitor T 100.0 6.7E-30 1.5E-34 251.8 16.1 126 503-695 4-134 (177)
340 PLN03073 ABC transporter F fam 100.0 1.2E-29 2.6E-34 298.0 20.9 176 499-697 508-688 (718)
341 TIGR01187 potA spermidine/putr 100.0 1.8E-30 4E-35 279.9 12.9 152 533-695 1-163 (325)
342 COG3845 ABC-type uncharacteriz 100.0 8.2E-30 1.8E-34 276.5 15.2 184 499-692 4-195 (501)
343 COG4136 ABC-type uncharacteriz 100.0 8.7E-30 1.9E-34 236.7 13.1 168 499-680 2-177 (213)
344 COG4172 ABC-type uncharacteriz 100.0 1.6E-29 3.4E-34 266.8 16.8 178 499-685 276-474 (534)
345 PRK10636 putative ABC transpor 100.0 2.5E-29 5.4E-34 293.5 20.2 173 499-695 312-489 (638)
346 COG4161 ArtP ABC-type arginine 100.0 5.5E-30 1.2E-34 240.5 10.6 175 499-685 2-189 (242)
347 COG1119 ModF ABC-type molybden 100.0 3.4E-29 7.3E-34 251.5 15.9 177 499-686 31-220 (257)
348 TIGR00956 3a01205 Pleiotropic 100.0 3.2E-29 7E-34 313.0 16.2 171 515-693 74-270 (1394)
349 PRK10636 putative ABC transpor 100.0 1.3E-28 2.8E-33 287.5 20.1 180 500-695 2-208 (638)
350 PRK13409 putative ATPase RIL; 100.0 2.1E-29 4.5E-34 290.8 12.6 177 504-696 78-274 (590)
351 COG1101 PhnK ABC-type uncharac 100.0 2.7E-29 5.8E-34 246.5 10.2 167 514-680 18-191 (263)
352 KOG0064 Peroxisomal long-chain 100.0 2.2E-25 4.7E-30 241.4 39.9 314 363-695 306-671 (728)
353 PRK11147 ABC transporter ATPas 100.0 7.8E-28 1.7E-32 281.2 20.4 179 500-694 4-214 (635)
354 PLN03140 ABC transporter G fam 100.0 1.5E-28 3.2E-33 306.5 13.0 176 515-693 178-397 (1470)
355 KOG0061 Transporter, ABC super 100.0 3.9E-28 8.5E-33 280.9 15.2 189 498-694 24-231 (613)
356 cd03238 ABC_UvrA The excision 100.0 6.7E-28 1.4E-32 237.4 14.5 137 514-695 7-151 (176)
357 COG4604 CeuD ABC-type enteroch 100.0 1.4E-28 3E-33 238.4 8.5 174 500-685 2-183 (252)
358 COG4133 CcmA ABC-type transpor 100.0 2.6E-28 5.6E-33 235.6 10.3 169 500-681 3-174 (209)
359 PF00664 ABC_membrane: ABC tra 99.9 3.6E-24 7.7E-29 218.7 40.0 270 185-454 2-275 (275)
360 COG0488 Uup ATPase components 99.9 5.7E-27 1.2E-31 264.9 18.8 170 499-685 3-201 (530)
361 PLN03073 ABC transporter F fam 99.9 6.5E-27 1.4E-31 274.9 14.6 191 499-694 177-402 (718)
362 COG4167 SapF ABC-type antimicr 99.9 4.6E-27 9.9E-32 225.0 10.1 160 515-684 26-196 (267)
363 COG0488 Uup ATPase components 99.9 2.6E-25 5.6E-30 251.5 22.1 168 498-687 320-489 (530)
364 COG4778 PhnL ABC-type phosphon 99.9 1.7E-26 3.7E-31 218.9 8.2 176 499-682 4-197 (235)
365 COG4172 ABC-type uncharacteriz 99.9 3E-25 6.4E-30 234.6 14.0 179 499-685 6-205 (534)
366 COG4152 ABC-type uncharacteriz 99.9 5.1E-25 1.1E-29 220.0 11.5 173 499-686 2-179 (300)
367 COG0396 sufC Cysteine desulfur 99.9 3.9E-24 8.5E-29 212.7 15.8 179 499-686 3-193 (251)
368 cd03278 ABC_SMC_barmotin Barmo 99.9 1E-24 2.2E-29 219.0 10.6 148 519-694 14-177 (197)
369 COG4107 PhnK ABC-type phosphon 99.9 2E-23 4.3E-28 198.7 13.1 173 499-683 6-197 (258)
370 KOG0927 Predicted transporter 99.9 7.2E-24 1.6E-28 231.3 10.3 170 498-685 388-557 (614)
371 COG4674 Uncharacterized ABC-ty 99.9 1.2E-23 2.6E-28 203.9 9.7 174 499-684 5-194 (249)
372 COG4586 ABC-type uncharacteriz 99.9 1.7E-23 3.7E-28 212.2 9.9 160 515-685 37-204 (325)
373 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.8E-23 3.8E-28 216.2 9.6 165 499-684 3-209 (243)
374 cd03279 ABC_sbcCD SbcCD and ot 99.9 2.6E-23 5.6E-28 211.2 10.0 171 499-694 5-194 (213)
375 cd03270 ABC_UvrA_I The excisio 99.9 2.5E-23 5.4E-28 213.4 9.3 168 515-695 8-201 (226)
376 COG1134 TagH ABC-type polysacc 99.9 4.6E-22 9.9E-27 200.4 16.6 163 514-696 39-210 (249)
377 cd03271 ABC_UvrA_II The excisi 99.9 7.5E-23 1.6E-27 213.3 8.7 169 516-695 9-234 (261)
378 KOG0059 Lipid exporter ABCA1 a 99.9 7.5E-22 1.6E-26 237.8 12.3 187 498-695 563-756 (885)
379 cd03273 ABC_SMC2_euk Eukaryoti 99.9 4.8E-22 1E-26 206.9 8.9 154 528-683 25-216 (251)
380 cd03274 ABC_SMC4_euk Eukaryoti 99.8 4.5E-22 9.8E-27 202.1 4.6 159 499-684 5-178 (212)
381 KOG0065 Pleiotropic drug resis 99.8 1.5E-21 3.3E-26 231.6 9.3 184 501-694 789-991 (1391)
382 cd03240 ABC_Rad50 The catalyti 99.8 5.1E-21 1.1E-25 193.3 9.3 136 522-684 17-169 (204)
383 COG1129 MglA ABC-type sugar tr 99.8 8.9E-20 1.9E-24 202.3 12.8 184 499-689 263-453 (500)
384 KOG0066 eIF2-interacting prote 99.8 1.1E-19 2.3E-24 193.2 12.3 167 499-688 586-755 (807)
385 cd03275 ABC_SMC1_euk Eukaryoti 99.8 4E-19 8.7E-24 184.6 8.6 157 529-685 23-207 (247)
386 KOG0927 Predicted transporter 99.8 3.1E-18 6.7E-23 187.6 14.8 187 497-693 73-279 (614)
387 COG3845 ABC-type uncharacteriz 99.8 2.5E-18 5.4E-23 187.5 12.4 176 499-685 257-451 (501)
388 COG4138 BtuD ABC-type cobalami 99.8 2.6E-19 5.7E-24 170.9 4.1 164 500-682 4-177 (248)
389 PRK00635 excinuclease ABC subu 99.8 3E-18 6.4E-23 213.3 14.1 180 499-695 600-874 (1809)
390 KOG0062 ATPase component of AB 99.8 2.5E-18 5.3E-23 187.4 11.0 168 498-687 361-532 (582)
391 PRK00349 uvrA excinuclease ABC 99.7 5.8E-18 1.3E-22 202.8 12.9 188 499-695 614-895 (943)
392 KOG0062 ATPase component of AB 99.7 5.3E-18 1.1E-22 184.8 9.8 164 497-684 78-245 (582)
393 cd03276 ABC_SMC6_euk Eukaryoti 99.7 1.2E-17 2.6E-22 168.0 11.1 141 518-683 12-159 (198)
394 COG1245 Predicted ATPase, RNas 99.7 2E-17 4.3E-22 177.9 11.0 153 504-683 340-501 (591)
395 cd00820 PEPCK_HprK Phosphoenol 99.7 6.5E-18 1.4E-22 152.0 6.2 76 515-598 2-77 (107)
396 TIGR00630 uvra excinuclease AB 99.7 3.9E-17 8.5E-22 195.4 12.5 178 499-695 612-893 (924)
397 COG2401 ABC-type ATPase fused 99.7 1E-16 2.2E-21 170.5 11.3 171 495-684 353-554 (593)
398 KOG0065 Pleiotropic drug resis 99.7 5.7E-17 1.2E-21 193.2 7.4 179 515-696 128-319 (1391)
399 KOG2355 Predicted ABC-type tra 99.6 7.9E-16 1.7E-20 150.7 11.8 168 497-681 11-191 (291)
400 cd03239 ABC_SMC_head The struc 99.6 1.1E-15 2.4E-20 151.1 10.8 58 622-683 83-144 (178)
401 cd03277 ABC_SMC5_euk Eukaryoti 99.6 5.6E-16 1.2E-20 157.6 8.2 150 519-683 15-176 (213)
402 cd03242 ABC_RecF RecF is a rec 99.6 2.2E-14 4.8E-19 151.1 13.4 173 518-691 12-246 (270)
403 cd03280 ABC_MutS2 MutS2 homolo 99.6 6.6E-15 1.4E-19 148.2 8.9 122 518-694 17-152 (200)
404 cd03241 ABC_RecN RecN ATPase i 99.6 8.9E-15 1.9E-19 154.6 10.3 58 637-694 170-234 (276)
405 COG4170 SapD ABC-type antimicr 99.5 1.6E-14 3.5E-19 141.8 8.8 177 501-685 5-206 (330)
406 COG1245 Predicted ATPase, RNas 99.5 1.8E-14 3.8E-19 155.4 7.9 161 504-684 79-260 (591)
407 cd03283 ABC_MutS-like MutS-lik 99.5 1.9E-14 4E-19 144.9 5.7 131 515-695 14-150 (199)
408 cd03227 ABC_Class2 ABC-type Cl 99.5 2.1E-13 4.7E-18 132.7 11.5 120 522-695 15-143 (162)
409 TIGR00606 rad50 rad50. This fa 99.5 2E-13 4.3E-18 171.8 12.0 109 587-700 1153-1277(1311)
410 PTZ00132 GTP-binding nuclear p 99.5 7.1E-14 1.5E-18 141.8 6.4 145 530-685 11-205 (215)
411 cd01128 rho_factor Transcripti 99.4 1E-13 2.3E-18 143.9 7.3 152 517-681 6-181 (249)
412 cd03285 ABC_MSH2_euk MutS2 hom 99.4 4.6E-13 1E-17 137.1 9.9 131 515-696 17-156 (222)
413 PRK00635 excinuclease ABC subu 99.3 5.9E-12 1.3E-16 157.8 13.4 156 517-683 1505-1748(1809)
414 cd03243 ABC_MutS_homologs The 99.3 4.5E-12 9.8E-17 127.8 8.6 128 521-697 22-155 (202)
415 COG0178 UvrA Excinuclease ATPa 99.3 7.8E-12 1.7E-16 143.2 10.9 56 628-684 812-872 (935)
416 cd03282 ABC_MSH4_euk MutS4 hom 99.3 8.6E-12 1.9E-16 126.1 10.0 137 515-700 16-158 (204)
417 TIGR02858 spore_III_AA stage I 99.3 1.7E-11 3.7E-16 128.8 11.7 119 529-695 112-231 (270)
418 PRK00064 recF recombination pr 99.3 1.9E-11 4.1E-16 134.1 12.6 47 637-683 273-328 (361)
419 KOG0063 RNAse L inhibitor, ABC 99.2 3.8E-11 8.3E-16 128.9 11.4 153 506-683 342-502 (592)
420 PRK10733 hflB ATP-dependent me 99.2 1.2E-12 2.6E-17 153.3 -1.6 164 356-553 39-210 (644)
421 TIGR00767 rho transcription te 99.2 2.1E-10 4.6E-15 125.1 13.2 81 468-555 104-195 (415)
422 TIGR03238 dnd_assoc_3 dnd syst 99.1 2.2E-11 4.7E-16 134.7 4.1 68 515-585 19-87 (504)
423 cd03284 ABC_MutS1 MutS1 homolo 99.1 3E-10 6.6E-15 115.9 10.3 126 515-695 18-155 (216)
424 PF02463 SMC_N: RecF/RecN/SMC 99.1 1E-10 2.3E-15 119.1 6.6 48 637-684 136-187 (220)
425 KOG0066 eIF2-interacting prote 99.1 2.9E-10 6.2E-15 122.1 9.1 157 499-681 264-456 (807)
426 TIGR01069 mutS2 MutS2 family p 99.1 1.6E-09 3.4E-14 129.1 15.6 147 498-696 294-448 (771)
427 cd03281 ABC_MSH5_euk MutS5 hom 99.0 2E-09 4.2E-14 109.7 11.6 131 516-698 17-159 (213)
428 PRK14079 recF recombination pr 99.0 7.6E-09 1.6E-13 113.1 15.0 47 637-683 263-318 (349)
429 PRK11098 microcin B17 transpor 99.0 7E-06 1.5E-10 90.8 37.9 251 216-481 133-396 (409)
430 PRK12369 putative transporter; 99.0 1.2E-05 2.5E-10 87.1 38.8 239 227-480 69-321 (326)
431 cd03287 ABC_MSH3_euk MutS3 hom 98.9 1.7E-09 3.8E-14 110.6 8.5 133 515-696 18-157 (222)
432 PRK06002 fliI flagellum-specif 98.9 3.3E-09 7.1E-14 117.9 10.5 116 497-634 137-259 (450)
433 PRK07721 fliI flagellum-specif 98.9 7.9E-09 1.7E-13 115.5 13.0 141 515-684 146-296 (438)
434 TIGR00630 uvra excinuclease AB 98.9 2E-09 4.3E-14 129.8 8.3 75 620-695 469-551 (924)
435 PRK00300 gmk guanylate kinase; 98.9 6.7E-10 1.5E-14 111.8 3.7 93 526-628 3-117 (205)
436 PRK00349 uvrA excinuclease ABC 98.9 2.6E-09 5.6E-14 129.0 8.7 59 636-694 488-552 (943)
437 TIGR02788 VirB11 P-type DNA tr 98.9 1E-08 2.3E-13 110.2 11.6 121 521-697 137-257 (308)
438 PRK06793 fliI flagellum-specif 98.9 3.5E-09 7.6E-14 117.5 7.8 137 498-684 129-273 (432)
439 PF06472 ABC_membrane_2: ABC t 98.9 1.9E-05 4.1E-10 84.0 35.7 196 215-414 60-263 (281)
440 smart00534 MUTSac ATPase domai 98.9 2.8E-09 6E-14 106.1 6.1 58 636-696 60-125 (185)
441 PRK08533 flagellar accessory p 98.8 2.5E-08 5.4E-13 102.8 11.3 131 499-683 7-149 (230)
442 PF13748 ABC_membrane_3: ABC t 98.8 1.8E-05 3.9E-10 80.5 31.4 168 176-354 4-171 (237)
443 KOG0063 RNAse L inhibitor, ABC 98.8 7.6E-09 1.6E-13 111.5 5.8 154 526-694 98-274 (592)
444 cd01130 VirB11-like_ATPase Typ 98.8 5.5E-08 1.2E-12 96.9 11.6 126 516-696 13-138 (186)
445 smart00382 AAA ATPases associa 98.7 1.2E-07 2.6E-12 86.9 12.3 97 527-677 1-100 (148)
446 PRK00409 recombination and DNA 98.7 1.7E-07 3.7E-12 112.1 14.6 64 636-700 389-457 (782)
447 cd01131 PilT Pilus retraction 98.7 6.5E-08 1.4E-12 97.4 9.4 108 530-695 3-111 (198)
448 PRK01889 GTPase RsgA; Reviewed 98.7 1.4E-08 3.1E-13 111.2 4.0 133 517-655 184-321 (356)
449 PHA02562 46 endonuclease subun 98.7 1.7E-08 3.7E-13 117.0 4.8 75 609-684 433-526 (562)
450 PRK08149 ATP synthase SpaL; Va 98.6 8.9E-08 1.9E-12 106.3 8.0 100 515-633 139-245 (428)
451 PRK13695 putative NTPase; Prov 98.6 6.8E-08 1.5E-12 95.0 6.1 56 637-692 78-135 (174)
452 PRK07196 fliI flagellum-specif 98.6 3.4E-08 7.3E-13 109.8 4.3 81 515-596 143-233 (434)
453 PRK10078 ribose 1,5-bisphospho 98.4 2.4E-07 5.3E-12 92.2 5.6 55 528-585 2-56 (186)
454 TIGR02524 dot_icm_DotB Dot/Icm 98.4 2.5E-07 5.5E-12 101.3 5.9 88 526-616 132-234 (358)
455 cd01120 RecA-like_NTPases RecA 98.4 6.4E-07 1.4E-11 85.3 7.7 101 530-672 1-102 (165)
456 PRK06995 flhF flagellar biosyn 98.4 1.6E-07 3.5E-12 105.9 4.1 61 520-599 248-308 (484)
457 PF13304 AAA_21: AAA domain; P 98.4 4E-07 8.7E-12 91.9 6.5 55 637-691 236-297 (303)
458 PRK09825 idnK D-gluconate kina 98.4 1.9E-07 4.1E-12 92.3 3.7 65 527-597 2-68 (176)
459 TIGR00235 udk uridine kinase. 98.4 3.8E-07 8.2E-12 92.4 5.1 44 526-590 4-47 (207)
460 PF05992 SbmA_BacA: SbmA/BacA- 98.4 0.0063 1.4E-07 64.7 37.0 218 250-478 81-311 (315)
461 cd03286 ABC_MSH6_euk MutS6 hom 98.4 1.5E-06 3.3E-11 88.8 9.3 37 515-551 17-53 (218)
462 cd02023 UMPK Uridine monophosp 98.3 3.6E-07 7.9E-12 91.6 4.5 108 530-670 1-113 (198)
463 PLN02796 D-glycerate 3-kinase 98.3 1.8E-07 3.9E-12 100.9 2.1 62 515-576 79-151 (347)
464 TIGR03263 guanyl_kin guanylate 98.3 3.2E-07 7E-12 90.3 3.6 77 528-614 1-89 (180)
465 TIGR02322 phosphon_PhnN phosph 98.3 9.3E-07 2E-11 87.1 6.8 63 528-591 1-79 (179)
466 TIGR01420 pilT_fam pilus retra 98.3 4.2E-06 9.2E-11 91.4 12.0 114 525-696 119-233 (343)
467 PRK05480 uridine/cytidine kina 98.3 1.2E-06 2.6E-11 88.7 7.1 69 526-615 4-77 (209)
468 cd00071 GMPK Guanosine monopho 98.3 3.5E-07 7.5E-12 86.7 2.9 72 531-612 2-86 (137)
469 TIGR03497 FliI_clade2 flagella 98.3 1.9E-06 4E-11 95.9 8.4 99 515-633 125-231 (413)
470 PRK10869 recombination and rep 98.3 1E-06 2.2E-11 101.9 6.2 57 637-693 430-493 (553)
471 TIGR00634 recN DNA repair prot 98.2 1.1E-06 2.4E-11 102.1 6.0 48 637-684 440-491 (563)
472 TIGR02903 spore_lon_C ATP-depe 98.2 2.9E-06 6.2E-11 99.4 9.2 110 527-683 174-292 (615)
473 PRK06315 type III secretion sy 98.2 1.1E-06 2.4E-11 98.1 4.6 102 515-618 152-276 (442)
474 PRK15494 era GTPase Era; Provi 98.2 9.4E-07 2E-11 96.3 3.9 57 494-552 13-76 (339)
475 cd01124 KaiC KaiC is a circadi 98.2 3.1E-06 6.8E-11 83.5 7.3 47 636-682 70-125 (187)
476 PRK06067 flagellar accessory p 98.2 3.1E-06 6.8E-11 87.2 7.0 105 524-670 21-135 (234)
477 cd01136 ATPase_flagellum-secre 98.1 3.3E-06 7.1E-11 91.1 6.8 105 515-634 57-164 (326)
478 PRK03846 adenylylsulfate kinas 98.1 1.6E-06 3.6E-11 87.1 4.1 56 526-585 22-78 (198)
479 PRK13830 conjugal transfer pro 98.1 7E-06 1.5E-10 99.3 10.2 43 652-694 649-696 (818)
480 PRK07960 fliI flagellum-specif 98.1 3.9E-06 8.4E-11 93.6 6.3 100 516-633 164-269 (455)
481 PLN03046 D-glycerate 3-kinase; 98.1 2.3E-06 5.1E-11 93.9 3.7 49 529-577 213-264 (460)
482 PRK01156 chromosome segregatio 98.1 4.8E-06 1E-10 102.1 6.5 46 636-681 800-851 (895)
483 PRK09862 putative ATP-dependen 98.0 3.7E-06 7.9E-11 95.7 4.8 65 502-569 187-251 (506)
484 TIGR01026 fliI_yscN ATPase Fli 98.0 8.5E-06 1.8E-10 91.5 7.7 142 515-684 151-301 (440)
485 PF13558 SbcCD_C: Putative exo 98.0 8.4E-06 1.8E-10 71.7 5.9 47 636-682 31-90 (90)
486 cd01876 YihA_EngB The YihA (En 98.0 1.8E-05 3.9E-10 75.3 8.5 42 637-682 122-168 (170)
487 PRK07594 type III secretion sy 98.0 4E-06 8.8E-11 93.4 4.3 69 498-569 128-196 (433)
488 PRK09270 nucleoside triphospha 98.0 5.5E-06 1.2E-10 85.3 4.9 54 527-584 32-89 (229)
489 TIGR02546 III_secr_ATP type II 98.0 5E-06 1.1E-10 93.0 4.7 54 515-569 133-186 (422)
490 PRK00454 engB GTP-binding prot 98.0 3.7E-06 8.1E-11 83.4 3.2 43 636-682 146-191 (196)
491 TIGR00618 sbcc exonuclease Sbc 98.0 6.3E-06 1.4E-10 102.6 5.4 65 636-700 949-1027(1042)
492 PRK10246 exonuclease subunit S 98.0 6.4E-06 1.4E-10 102.2 5.4 49 636-684 948-1004(1047)
493 TIGR02168 SMC_prok_B chromosom 98.0 7.3E-06 1.6E-10 102.8 5.9 48 637-684 1089-1140(1179)
494 PRK05688 fliI flagellum-specif 97.9 1.2E-05 2.5E-10 90.1 6.4 103 515-633 156-262 (451)
495 TIGR00101 ureG urease accessor 97.9 9.7E-06 2.1E-10 81.8 5.2 57 530-587 3-59 (199)
496 PRK03918 chromosome segregatio 97.9 9.9E-06 2.1E-10 99.1 6.3 47 637-683 788-840 (880)
497 PRK10416 signal recognition pa 97.9 5.4E-06 1.2E-10 89.5 3.5 62 526-587 112-179 (318)
498 PRK08472 fliI flagellum-specif 97.9 1.2E-05 2.5E-10 89.9 6.1 106 515-633 145-250 (434)
499 PRK13891 conjugal transfer pro 97.9 0.00014 3E-09 88.6 15.9 37 648-684 680-717 (852)
500 PRK05922 type III secretion sy 97.9 2E-05 4.4E-10 87.8 7.3 106 515-633 145-251 (434)
No 1
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.1e-108 Score=950.15 Aligned_cols=565 Identities=29% Similarity=0.422 Sum_probs=514.3
Q ss_pred CCCcccceeeeecCcEEEeCCCCCCCCcceeechhHHHHHHHHHHHHhcCCCCCCCCCchHHHHhhcCcccHHHHHHHHH
Q 005302 95 RCCHFHPLKSSSINGFSVQNDSLEHFDGEVNVDFNEKIRRWIRFIQSILPGGSWWSFDDDVEVKIMAKPVTLWRALGKMW 174 (703)
Q Consensus 95 ~~nhfvvl~~v~~~~~~i~dp~~~~a~g~r~~~~~e~~~~ftg~alel~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (703)
+.+||||++++++++++|.|| +.|.++++.+|+.+++||+++.+.|+.. ++.++.++. .+.+++
T Consensus 83 ~~~h~vVl~~~~~~~~~v~dp----~~g~~~l~~~e~~~~~tg~~l~l~~~~~--------~~~~~~~~~----~~~~f~ 146 (709)
T COG2274 83 NGNHFVVLYKIDKNKVVVLDP----AKGIRRLSLEEFEKLWTGIALLLAPTAS--------RKFKDIPPF----GLSWFI 146 (709)
T ss_pred cCCcEEEEEEecCCeEEEEeC----CCCcEEcCHHHHHHhhheeEEEEecccc--------ccccccccc----chHhHH
Confidence 556999999999999999999 9999999999999999999999999863 111222232 246677
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 005302 175 DLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILL-------CVTSGICSGLRGCCFGI 247 (703)
Q Consensus 175 ~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l-------~~~~~~~~~lr~~~~~~ 247 (703)
+.+.++++.+..+++.+++..+++++.|++.+.++ |.+++..+...+.++ .+...++..+|+++..+
T Consensus 147 ~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~vi------D~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~ 220 (709)
T COG2274 147 PLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVI------DKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAH 220 (709)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999988885 444554444444333 33456788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005302 248 ANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCT 327 (703)
Q Consensus 248 ~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~ 327 (703)
++.++..++..++|+|++++|++||++|++||+++|+. +.++|+++++..+..++.|++++++.+++|++|||+|++++
T Consensus 221 ~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~ 299 (709)
T COG2274 221 LGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIV 299 (709)
T ss_pred HHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997 67999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 328 LMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFW 407 (703)
Q Consensus 328 l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~ 407 (703)
++.+++++++..++.+..++..++..+..++.++.+.|++.|++|||+.+.|++...+|++...++.+...+..+.....
T Consensus 300 l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 379 (709)
T COG2274 300 LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALIL 379 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999997766666666655555557999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccc
Q 005302 408 NLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFM 487 (703)
Q Consensus 408 ~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~ 487 (703)
+.+..++..+..++++|+|+++|++|++|+|+++||.++.++|.+|+.++++.+.++++...+.+|+.|+++.|+|++.+
T Consensus 380 ~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~ 459 (709)
T COG2274 380 NTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD 459 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999986522
Q ss_pred cccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC
Q 005302 488 SKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK 567 (703)
Q Consensus 488 ~~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~ 567 (703)
......++..|+|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+|+|+|+|+|++|+|++||.|++
T Consensus 460 ~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~ 538 (709)
T COG2274 460 KTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN 538 (709)
T ss_pred cccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHH
Confidence 2123445567899999999999976 478999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHH
Q 005302 568 EVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQR 645 (703)
Q Consensus 568 ~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQR 645 (703)
++++.++|++||||+||++||+|||+|||++++| ++++|++++||+.||+||||++||+||||.||| .+||||||||
T Consensus 539 ~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p-~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQr 617 (709)
T COG2274 539 DIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP-EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQR 617 (709)
T ss_pred hcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHH
Confidence 9999999999999999999999999999999987 999999999999999999999999999999999 4999999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
|+|||||++||+||||||||||||++||++|.++|.+..
T Consensus 618 lalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~ 656 (709)
T COG2274 618 LALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL 656 (709)
T ss_pred HHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998766
No 2
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-108 Score=921.90 Aligned_cols=515 Identities=43% Similarity=0.665 Sum_probs=485.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 168 RALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQS-SEI-AVFHRNVRLLILLCVTSGICSGLRGCCF 245 (703)
Q Consensus 168 ~~~~~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~-~d~-~~~~~~~~ll~~l~~~~~~~~~lr~~~~ 245 (703)
..+++++++.+++++.+..++++++++++..+++|.+++.+++.... .|. ..+......+..+.++.+++.++|.+++
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999887765433 222 2344455666777778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005302 246 GIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGL 325 (703)
Q Consensus 246 ~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lal 325 (703)
...+.++..++|..+|+++++++++|||+.++||++||+++|++.+.+.++..+...+.+.++.++.+++|+.+||.|++
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltl 292 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTL 292 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 326 CTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYG 405 (703)
Q Consensus 326 v~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~ 405 (703)
++++.+|+++++..+|+++.++..++.+++.|+.++...|.+.+|+|||+|+.|++|.+||.++.++..+...|.....+
T Consensus 293 v~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~ 372 (716)
T KOG0058|consen 293 VTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYG 372 (716)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 005302 406 FWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQ 485 (703)
Q Consensus 406 ~~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~ 485 (703)
.+.+..++..++..+.++++|++++.+|+||.|.+++|+.|..++..++..++..+.++|++.++.+|++|++|.+|..+
T Consensus 373 ~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~ 452 (716)
T KOG0058|consen 373 IFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIP 452 (716)
T ss_pred HhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred ccccccccc-CCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE
Q 005302 486 FMSKGKKLQ-RLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF 564 (703)
Q Consensus 486 ~~~~~~~~~-~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~ 564 (703)
. ++...| ...|.|+|+||+|+||.+++.+||||+||+|+|||+||+||||||||||+++||++||+|++|+|++||+
T Consensus 453 ~--~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~ 530 (716)
T KOG0058|consen 453 L--TGTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGV 530 (716)
T ss_pred C--CCccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCe
Confidence 2 243223 5689999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCC--CCChHH
Q 005302 565 PIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD--LLSGGQ 642 (703)
Q Consensus 565 di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~--~LSGGQ 642 (703)
||+++++.+||++||+|.|||.||+|||+|||+||.+ ++++|+|++||++|++||||.++|+||||.|||+ +|||||
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ 609 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ 609 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence 9999999999999999999999999999999999988 9999999999999999999999999999999994 999999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 643 kQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
||||||||||+|||+||||||||||||+++|..|+++|.++.+
T Consensus 610 KQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~ 652 (716)
T KOG0058|consen 610 KQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ 652 (716)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999975543
No 3
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=7.3e-98 Score=881.09 Aligned_cols=587 Identities=23% Similarity=0.291 Sum_probs=509.8
Q ss_pred CCCCCCcccceeeeecCcEEEeCCCCCCCCcceeechhHHHHHHHHHHHHhcCCCCCCCCCchHHHHhhcCcccHHHHHH
Q 005302 92 SSKRCCHFHPLKSSSINGFSVQNDSLEHFDGEVNVDFNEKIRRWIRFIQSILPGGSWWSFDDDVEVKIMAKPVTLWRALG 171 (703)
Q Consensus 92 ~~~~~nhfvvl~~v~~~~~~i~dp~~~~a~g~r~~~~~e~~~~ftg~alel~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (703)
.+.++||||||+++++++++|+|| +.|.|+++++.+|+.++|||+++++.|++. |++.+.+ + ..++
T Consensus 80 ~~~~~~H~vVl~~~~~~~~~i~dP--~~~~g~~~~~~~ef~~~~~g~~l~~~~~~~-------~~~~~~~-~----~~~~ 145 (708)
T TIGR01193 80 KNGKLPHYYVVYGVTKNHLIIADP--DPTVGITKISKEDFYEEWTGIAIFISPTPE-------YKPIKEK-E----NSLL 145 (708)
T ss_pred cCCCCCcEEEEEEEeCCEEEEEcC--CcccCCEEecHHHHHhhCCCEEEEEEeccc-------ccccccc-c----chHH
Confidence 345789999999999999999999 557899999999999999999999999875 5432221 1 2355
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 172 KMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSS-EIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANM 250 (703)
Q Consensus 172 ~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~-d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~ 250 (703)
+++++++++++.+..+++++++..++.++.|++++.+++..... +..........++++.++..++.++++++...++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (708)
T TIGR01193 146 KFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQ 225 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788889999999999999999999999999998876543211 11111111112233344466788999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005302 251 ILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMI 330 (703)
Q Consensus 251 ~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~ 330 (703)
++..++|.++|+|++++|++||+++++||+++|++ |++.++++++..+...+.++++.++++++|++++|++++++++.
T Consensus 226 ~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~ 304 (708)
T TIGR01193 226 RLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLS 304 (708)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999998 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 331 CSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLC 410 (703)
Q Consensus 331 ~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~ 410 (703)
+++++++..++.+..++..++..+..++.++.+.|+++|+++||++|.|+.+.++|++...++.+...+..+.......+
T Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (708)
T TIGR01193 305 IPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAI 384 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988887777777777777777778999999999999999999999999999999999998888888887777766777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccccc
Q 005302 411 FNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKG 490 (703)
Q Consensus 411 ~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~~ 490 (703)
..++..+..++++++|++++.+|++|+|++++|..|..++..|+.++.+.+.+++++..+.+|+.++++.++|.......
T Consensus 385 ~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~ 464 (708)
T TIGR01193 385 KAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKR 464 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccc
Confidence 77777788889999999999999999999999999999999999999999999999999999999999887664311111
Q ss_pred ccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC
Q 005302 491 KKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD 570 (703)
Q Consensus 491 ~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~ 570 (703)
...++..+.|+++||+|+|++ ++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+|+++++
T Consensus 465 ~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~ 542 (708)
T TIGR01193 465 TELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDID 542 (708)
T ss_pred cCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcC
Confidence 112234578999999999974 357999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHH
Q 005302 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAI 648 (703)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaL 648 (703)
.+++|++||||+||++||+|||+|||++++++++++|++++||+.|+++|+|++||+||||.||| .+|||||||||+|
T Consensus 543 ~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRial 622 (708)
T TIGR01193 543 RHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIAL 622 (708)
T ss_pred HHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999423899999999999999999999999999999998 5899999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC--cEEEEecchhH
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSNG--LLVKSLHFLSL 695 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~--~~~~~~~~~~~ 695 (703)
||||+++|+|||||||||+||+++|++|.++|++.. -.+---|-++.
T Consensus 623 ARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~ 671 (708)
T TIGR01193 623 ARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSV 671 (708)
T ss_pred HHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHH
Confidence 999999999999999999999999999999999863 23444466553
No 4
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.7e-97 Score=876.72 Aligned_cols=582 Identities=23% Similarity=0.319 Sum_probs=508.6
Q ss_pred CCCcccceeeeecCcEEEeCCCCCCCCcceeechhHHHHHHHHHHHHhcCCCCCCCCCchHHHHhhcCcccHHHHHHHHH
Q 005302 95 RCCHFHPLKSSSINGFSVQNDSLEHFDGEVNVDFNEKIRRWIRFIQSILPGGSWWSFDDDVEVKIMAKPVTLWRALGKMW 174 (703)
Q Consensus 95 ~~nhfvvl~~v~~~~~~i~dp~~~~a~g~r~~~~~e~~~~ftg~alel~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (703)
++||||||+++++++++|+|| |.|+++++.+|+.++|+|+++++.|+.. |++.+. ++ ..+++++
T Consensus 83 ~~~h~vvl~~~~~~~~~i~dP----~~g~~~~~~~e~~~~~~g~~l~~~~~~~-------~~~~~~-~~----~~~~~~~ 146 (710)
T TIGR03796 83 NFNHFVVVEGFRGGRVYLNDP----ALGPRTVSLEEFDESFTGVVLTFEPGPE-------FQKGGR-KP----SLLRALW 146 (710)
T ss_pred cCCcEEEEEEEeCCEEEEECC----CCCCEEccHHHHHhhCCCeEEEEEECcc-------ccccCc-Cc----ccHHHHH
Confidence 789999999999999999999 9999999999999999999999999875 533221 11 2456777
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 175 DLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQS-SEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILV 253 (703)
Q Consensus 175 ~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~-~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~ 253 (703)
++++++++.+..+++++++..++.++.|++++..++.... .+..........++++.++..++.++++++...++.++.
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (710)
T TIGR03796 147 RRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLA 226 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999998887653311 111111111122223344466788999999999999999
Q ss_pred HHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005302 254 KRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSA 333 (703)
Q Consensus 254 ~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~~~l 333 (703)
.+++.++|+|++++|+++|+++++||+++|+++| +.++++++..+..++.+++++++++++|+.++|++++++++.+++
T Consensus 227 ~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~ 305 (710)
T TIGR03796 227 VGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAI 305 (710)
T ss_pred HHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988 889999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 334 LAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNM 413 (703)
Q Consensus 334 ~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 413 (703)
++++..++.+..++..++..+..++.++.+.|+++|+++||++|.|+.+.+||.+...+..+...+..+.......+..+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (710)
T TIGR03796 306 NVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTL 385 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777777777766777778899999999999999999999999999999999999888888888777777777788
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccc----c
Q 005302 414 LYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMS----K 489 (703)
Q Consensus 414 l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~----~ 489 (703)
+..+..++++++|++++.+|++|+|++++|..|...+..|+..+.+.+.++.++..+.+|+.++++.++|..... .
T Consensus 386 i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~ 465 (710)
T TIGR03796 386 LTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPA 465 (710)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccc
Confidence 888888999999999999999999999999999999999999999999999999999999999998876643111 0
Q ss_pred -cccc-cCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC
Q 005302 490 -GKKL-QRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK 567 (703)
Q Consensus 490 -~~~~-~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~ 567 (703)
.... +...+.|+++||+|+|++. ++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+|++
T Consensus 466 ~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 544 (710)
T TIGR03796 466 AGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPRE 544 (710)
T ss_pred cccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHH
Confidence 0111 2235689999999999864 368999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHH
Q 005302 568 EVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQR 645 (703)
Q Consensus 568 ~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQR 645 (703)
+++.+++|++||||+||++||+|||+|||+++++ ++++|++++||+.++++|+|.+||+||||.+|| .+||||||||
T Consensus 545 ~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~-~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQR 623 (710)
T TIGR03796 545 EIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP-TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQR 623 (710)
T ss_pred HCCHHHHHhheeEEecCChhhhccHHHHhhCCCC-CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHH
Confidence 9999999999999999999999999999999976 899999999999999999999999999999998 4999999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcE-EEEecchhH
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGLL-VKSLHFLSL 695 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~-~~~~~~~~~ 695 (703)
|+|||||+++|+||||||||||||+++|++|.++|++.+.- +-.-|-++.
T Consensus 624 iaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~ 674 (710)
T TIGR03796 624 LEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLST 674 (710)
T ss_pred HHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 99999999999999999999999999999999999885432 233465554
No 5
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2e-96 Score=866.99 Aligned_cols=582 Identities=25% Similarity=0.305 Sum_probs=507.6
Q ss_pred CcccceeeeecCc-EEEeCCCCCCCCc--ceeechhHHHHHHHHHHHHhcCCCCCCCCCchHHHHhhcCcccHHHHHHHH
Q 005302 97 CHFHPLKSSSING-FSVQNDSLEHFDG--EVNVDFNEKIRRWIRFIQSILPGGSWWSFDDDVEVKIMAKPVTLWRALGKM 173 (703)
Q Consensus 97 nhfvvl~~v~~~~-~~i~dp~~~~a~g--~r~~~~~e~~~~ftg~alel~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (703)
|||||++++++++ ++|+|| |.| +|+++.+|++++|||+++++.|+.. |++.+++++. ...++++
T Consensus 72 ~h~vvl~~~~~~~~~~i~DP----~~g~~~~~~~~~e~~~~~~g~~l~~~~~~~-------~~~~~~~~~~--~~~~~~~ 138 (694)
T TIGR03375 72 GRACVLLGIDEDGKARVLLP----ETGDGEQELSLDALEALYSGYAIFVRPQFR-------FDARADELIS--PRPKHWF 138 (694)
T ss_pred CcEEEEEEEcCCCcEEEEcc----CCCCCceEecHHHHHhhcCCeEEEEecccc-------cccccccccc--cccchHH
Confidence 8999999999999 999999 999 9999999999999999999999875 4332221000 1235667
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 174 WDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQ-SSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMIL 252 (703)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~-~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l 252 (703)
+++++++++.+..+++++++..++.++.|++++..++... ..+..........++++.++..++.++++++....+.++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (694)
T TIGR03375 139 WSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKA 218 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888889999999999999999999999999888765432 111111111111222234446678899999999999999
Q ss_pred HHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005302 253 VKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICS 332 (703)
Q Consensus 253 ~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~~~ 332 (703)
..++|.++|+|++++|++| +++++||+++|+ +|++.++++++..+...+.++++.++++++|++++|++++++++.++
T Consensus 219 ~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 296 (694)
T TIGR03375 219 DLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIP 296 (694)
T ss_pred HHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999998 789999999999 69999999999999899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 333 ALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFN 412 (703)
Q Consensus 333 l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~ 412 (703)
+++++..++.++.++..++..+..++.++.+.|+++|+++||.++.|+.+.++|++..++..+...+..+.......+..
T Consensus 297 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (694)
T TIGR03375 297 LILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQ 376 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777777777777777899999999999999999999999999999999999999988888877777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccccccc
Q 005302 413 MLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKK 492 (703)
Q Consensus 413 ~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~~~~ 492 (703)
++..+..++++++|++++.+|++|+|++++|+.|..++..|+.++.+.+.++..+..+.+|+.++++.++|.+.......
T Consensus 377 ~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~ 456 (694)
T TIGR03375 377 FIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLH 456 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Confidence 88888888999999999999999999999999999999999999999999999999999999999998776431111111
Q ss_pred ccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChH
Q 005302 493 LQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK 572 (703)
Q Consensus 493 ~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~ 572 (703)
.++..+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+++++.+
T Consensus 457 ~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~ 535 (694)
T TIGR03375 457 RPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPA 535 (694)
T ss_pred CCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHH
Confidence 22335689999999999864 36899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHH
Q 005302 573 WLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIAR 650 (703)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLAR 650 (703)
++|++|+||+||+++|+|||+|||+++++ ++++|++++|++.++++|+|++||+||||.+|| .+|||||||||+|||
T Consensus 536 ~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalAR 614 (694)
T TIGR03375 536 DLRRNIGYVPQDPRLFYGTLRDNIALGAP-YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALAR 614 (694)
T ss_pred HHHhccEEECCChhhhhhhHHHHHhCCCC-CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999976 899999999999999999999999999999999 499999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC---CcEEEEecchhH
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVATLSN---GLLVKSLHFLSL 695 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~---~~~~~~~~~~~~ 695 (703)
||+++|+|||||||||+||+++|++|+++|+++ .-.+---|-++.
T Consensus 615 all~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~ 662 (694)
T TIGR03375 615 ALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSL 662 (694)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 999999999999999999999999999999987 344445576653
No 6
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.8e-95 Score=857.82 Aligned_cols=562 Identities=22% Similarity=0.290 Sum_probs=492.7
Q ss_pred CCCcccceeeeecCcEEEeCCCCCCCCcce-eechhHHHHHHHHHHHHhcCCCCCCCCCchHHHHhhcCcccHHHHHHHH
Q 005302 95 RCCHFHPLKSSSINGFSVQNDSLEHFDGEV-NVDFNEKIRRWIRFIQSILPGGSWWSFDDDVEVKIMAKPVTLWRALGKM 173 (703)
Q Consensus 95 ~~nhfvvl~~v~~~~~~i~dp~~~~a~g~r-~~~~~e~~~~ftg~alel~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (703)
+.||||||+++++++++|+|| |.|++ +++.+|++++ ||+++++.|+ - + + ++... +++
T Consensus 69 ~~~h~vvl~~~~~~~~~i~dP----~~g~~~~~~~~e~~~~-~g~~~~~~~~-~--------~--~--~~~~~----~~~ 126 (686)
T TIGR03797 69 EDGRPVALLPVSRGGYEIFDP----ATGTRRRVDAAMAATL-APEAYMFYRP-L--------P--D--KALGL----RDL 126 (686)
T ss_pred CCCCEEEEEEEcCCEEEEECC----CCCCCcccCHHHHHhc-CCEEEEEecC-C--------c--c--ccccH----HHH
Confidence 379999999999999999999 99998 9999999999 9999999987 1 1 1 11222 333
Q ss_pred HHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 174 WDL-VSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQS-SEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMI 251 (703)
Q Consensus 174 ~~~-~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~-~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~ 251 (703)
+++ ++++++.+..+++++++..++.++.|++++.+++.... .+..........++++.++..++.++++++...++.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (686)
T TIGR03797 127 LRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETR 206 (686)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 56788888889999999999999999998887653321 1111111111222333444667889999999999999
Q ss_pred HHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005302 252 LVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMIC 331 (703)
Q Consensus 252 l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~~ 331 (703)
+..++|.++|+|++++|++||+++++||+++|++ |++.+++.++..+...+.++++.++++++|+.++|++++++++++
T Consensus 207 ~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 285 (686)
T TIGR03797 207 MDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALA 285 (686)
T ss_pred HHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999997 679999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 332 SALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCF 411 (703)
Q Consensus 332 ~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~ 411 (703)
++++++..++.+..++..++..+..++.++.+.|+++|+++||++|.|+++.++|++..++..+...+..+.......+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (686)
T TIGR03797 286 LVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFN 365 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887776777776777667777788999999999999999999999999999999999999998888887777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccccc
Q 005302 412 NMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGK 491 (703)
Q Consensus 412 ~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~~~ 491 (703)
.++..+..++++++|++++.+|.+|+|++++|..+..++..|+..+.+.+.+++++..+.+|+.++++.++|... ...
T Consensus 366 ~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~--~~~ 443 (686)
T TIGR03797 366 AVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE--AKT 443 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc--CcC
Confidence 788888889999999999999999999999999999999999999999999999999999999999987765431 111
Q ss_pred cccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCh
Q 005302 492 KLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI 571 (703)
Q Consensus 492 ~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~ 571 (703)
.+.+..+.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+++++.
T Consensus 444 ~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~ 522 (686)
T TIGR03797 444 DPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDV 522 (686)
T ss_pred CCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCH
Confidence 122235689999999999754 3689999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHH
Q 005302 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIA 649 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLA 649 (703)
+++|++||||+||++||+|||+|||+++++ +++|++++|++.|+++|+|++||+||||.+|| .+|||||||||+||
T Consensus 523 ~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialA 600 (686)
T TIGR03797 523 QAVRRQLGVVLQNGRLMSGSIFENIAGGAP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIA 600 (686)
T ss_pred HHHHhccEEEccCCccCcccHHHHHhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999964 89999999999999999999999999999998 49999999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 650 RAILRDPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 650 RAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
|||+++|+|||||||||+||+++|++|.++|++.+
T Consensus 601 RAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~ 635 (686)
T TIGR03797 601 RALVRKPRILLFDEATSALDNRTQAIVSESLERLK 635 (686)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999874
No 7
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.5e-92 Score=833.83 Aligned_cols=577 Identities=26% Similarity=0.325 Sum_probs=502.7
Q ss_pred CcccceeeeecCcEEEeCCCCCCCCc-ceeechhHHHHHHHHHHHHhcCCCCCCCCCchHHHHhhcCcccHHHHHHHHHH
Q 005302 97 CHFHPLKSSSINGFSVQNDSLEHFDG-EVNVDFNEKIRRWIRFIQSILPGGSWWSFDDDVEVKIMAKPVTLWRALGKMWD 175 (703)
Q Consensus 97 nhfvvl~~v~~~~~~i~dp~~~~a~g-~r~~~~~e~~~~ftg~alel~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 175 (703)
||||||+++++++++|+|| +.| +++++.+|+.++|||+++++.|+. ++.+ +++ ..++++++
T Consensus 71 ~~~vvl~~~~~~~~~i~Dp----~~g~~~~i~~~e~~~~~~g~~l~~~~~~--------~~~~--~~~----~~~~~~~~ 132 (694)
T TIGR01846 71 GGWFVLGKLTANGVTIYDP----PGDAPEVLSREVLEALWSGTVILLATRS--------VAGK--ALK----FGFSWFIP 132 (694)
T ss_pred CcEEEEEEEcCCEEEEEcC----CCCCceeeCHHHHHhhCCCeEEEEecCc--------cccc--ccc----CcHHHHHH
Confidence 7999999999999999999 998 889999999999999999999874 2111 111 12456777
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 176 LVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQS-SEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVK 254 (703)
Q Consensus 176 ~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~-~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~ 254 (703)
+++++++.+...++++++..++.++.|++++.+++.... .+..........++++.++..++.+++.++...++.++..
T Consensus 133 ~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (694)
T TIGR01846 133 AIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDV 212 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888899999999999999999998887654321 1111111111222333444667889999999999999999
Q ss_pred HHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005302 255 RMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSAL 334 (703)
Q Consensus 255 ~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~ 334 (703)
++|.++|+|++++|++||+++++||+++|+ +|++.++++++..+..++.++++.++++++|++++|+++++++++++++
T Consensus 213 ~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~ 291 (694)
T TIGR01846 213 ELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCY 291 (694)
T ss_pred HHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 5899999999999998898999888889999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 335 AGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNML 414 (703)
Q Consensus 335 ~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~l 414 (703)
+++..++.+..++..++..+..++.++.+.|+++|+++||++|.|+.+.+||++..+++.+...+..+.......+..++
T Consensus 292 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 371 (694)
T TIGR01846 292 ALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELI 371 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776666666666666666678899999999999999999999999999999999999998888887777777777788
Q ss_pred HHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccccccccc
Q 005302 415 YHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKLQ 494 (703)
Q Consensus 415 ~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~~~~~~ 494 (703)
..+..++++++|++++.+|++|+|++++|..+...+..|+..+.+.+..++++..+.+|+.++++.++|... ......+
T Consensus 372 ~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~-~~~~~~~ 450 (694)
T TIGR01846 372 QKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS-AGLAALP 450 (694)
T ss_pred HHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC-CCCCCCC
Confidence 888889999999999999999999999999999999999999999999999999999999999988766431 1111122
Q ss_pred CCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHh
Q 005302 495 RLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL 574 (703)
Q Consensus 495 ~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~l 574 (703)
...+.|+++||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+++++.+++
T Consensus 451 ~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~ 529 (694)
T TIGR01846 451 ELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWL 529 (694)
T ss_pred CCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHH
Confidence 345689999999999864 3679999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHh
Q 005302 575 RGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAI 652 (703)
Q Consensus 575 R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL 652 (703)
|++|+||+||+++|+|||+|||+++++ +++++++++||+.++++|+|.+||+||||.+|+ .+|||||||||+|||||
T Consensus 530 r~~i~~v~q~~~lf~~ti~eNi~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARal 608 (694)
T TIGR01846 530 RRQMGVVLQENVLFSRSIRDNIALCNP-GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARAL 608 (694)
T ss_pred HHhCeEEccCCeehhhhHHHHHhcCCC-CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999976 899999999999999999999999999999998 49999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC---CcEEEEecchhH
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSN---GLLVKSLHFLSL 695 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~---~~~~~~~~~~~~ 695 (703)
+++|+|||||||||+||+++|+++.++|++. .-.+-.-|-++.
T Consensus 609 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 654 (694)
T TIGR01846 609 VGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLST 654 (694)
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHH
Confidence 9999999999999999999999999999887 334555566654
No 8
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=4.3e-89 Score=781.46 Aligned_cols=507 Identities=23% Similarity=0.268 Sum_probs=440.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 005302 172 KMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRL--LILLCVTSGICSGLRGCCFGIAN 249 (703)
Q Consensus 172 ~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~~~~~~~~~l--l~~l~~~~~~~~~lr~~~~~~~~ 249 (703)
+++++.+++++.++..++++++..++.+..|++++..++.....+. .......+ +.++.++..++.+++.++....+
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (529)
T TIGR02868 3 RILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAA 81 (529)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888999999999999998887654321111 11000011 11233445667788888888899
Q ss_pred HHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005302 250 MILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLM 329 (703)
Q Consensus 250 ~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~ 329 (703)
.++..++|.++|+|++++|.++|++.++|++++|+++|++.+++.+...+..++.+++..++++++|+.++|++++++++
T Consensus 82 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~ 161 (529)
T TIGR02868 82 LRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAA 161 (529)
T ss_pred HHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 330 ICSALAGLM-LIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWN 408 (703)
Q Consensus 330 ~~~l~~~i~-~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~ 408 (703)
.++++.++. .+..+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.+|+++..+++.+...+..+......
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (529)
T TIGR02868 162 GLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGA 241 (529)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877766554 4444444555566666678899999999999999999999999999999999999998888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccc
Q 005302 409 LCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMS 488 (703)
Q Consensus 409 ~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~ 488 (703)
.+..++..+..++++++|++++.+|.+|+|++++++.|...+..++..+.+.+..+..+..+.+|+.++++.+++.....
T Consensus 242 ~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 321 (529)
T TIGR02868 242 AAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV 321 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC
Confidence 77777777888888999999999999999999999999999999999999999999999999999999998776532111
Q ss_pred c--cccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeC
Q 005302 489 K--GKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI 566 (703)
Q Consensus 489 ~--~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di 566 (703)
. .....+..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+|+
T Consensus 322 ~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i 399 (529)
T TIGR02868 322 VPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSV 399 (529)
T ss_pred CCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEh
Confidence 1 11111234579999999999853 4699999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHH
Q 005302 567 KEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQ 644 (703)
Q Consensus 567 ~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQ 644 (703)
+++ .+++|++||||+|||+||+|||+|||++|++ ++++|++++|++.|+++|||.+||+||||.||| .+|||||||
T Consensus 400 ~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQ 477 (529)
T TIGR02868 400 SSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRP-DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQ 477 (529)
T ss_pred hhH-HHHHHhheEEEccCcccccccHHHHHhccCC-CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHH
Confidence 999 9999999999999999999999999999976 899999999999999999999999999999999 489999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 645 RIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 645 RIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
||+|||||+++|+||||||||||||++||++|+++++++
T Consensus 478 RiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 478 RLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999876
No 9
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-89 Score=804.22 Aligned_cols=522 Identities=33% Similarity=0.476 Sum_probs=451.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhcchhhH-HHH---HHHHHHHHHHHHHHHHHHHHH
Q 005302 170 LGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFL---TASIFTAQSSEIA-VFH---RNVRLLILLCVTSGICSGLRG 242 (703)
Q Consensus 170 ~~~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~---~~~i~~~~~~d~~-~~~---~~~~ll~~l~~~~~~~~~lr~ 242 (703)
+.+++++.+++|+.++++.+++++... ..|.+- ..++..-...|.. ... ....++++++++..++.+++.
T Consensus 652 ~~~i~k~~~pe~~~l~lG~i~a~i~G~---~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~ 728 (1228)
T KOG0055|consen 652 FWRIFKLNKPEWPYLLLGSLGAAIRGA---TYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQH 728 (1228)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777799999988877776555544 455442 2222111111211 111 112233445566778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccc-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005302 243 CCFGIANMILVKRMRETLYSALLLQDISFFDSE-TVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSW 321 (703)
Q Consensus 243 ~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r-~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~ 321 (703)
+++.+++.++..++|...|+++++++.+|||.. ++|.+.+|+.+|...++..+...+..++.++..+++.+++.|+|+|
T Consensus 729 ~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W 808 (1228)
T KOG0055|consen 729 YFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGW 808 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999773 4599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Q 005302 322 PLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQS 401 (703)
Q Consensus 322 ~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~ 401 (703)
+|++++++..|++++....+.++.+...+...+..++.+....|++.+|+||++|+.|+++.+.|.+.+++..+...|..
T Consensus 809 ~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~ 888 (1228)
T KOG0055|consen 809 RLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRG 888 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888888888878899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 005302 402 AAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLM 481 (703)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~ 481 (703)
.+.++..++.+.+..+...+.+|+|++++.+|.+++..++-.+.....-...+........++..+..++.+++++++++
T Consensus 889 ~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~ 968 (1228)
T KOG0055|consen 889 LISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRK 968 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999999998766544443444455566677788999999999999999999
Q ss_pred CCCcccc-ccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEE
Q 005302 482 PSDQFMS-KGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQIL 560 (703)
Q Consensus 482 ~e~~~~~-~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~ 560 (703)
|+.+... .+...++..|+|+|+||+|+||.+++.+||+|+||+|++||++||||||||||||++.||.|+|+|++|+|.
T Consensus 969 ~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~ 1048 (1228)
T KOG0055|consen 969 PTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVK 1048 (1228)
T ss_pred CCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 8654221 233345578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCC
Q 005302 561 IDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLL 638 (703)
Q Consensus 561 idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~L 638 (703)
|||+|+++++++++|++||.|+|||.||++||||||+||.+ +++++||++||+.|++|+||.+||+||||.||| .+|
T Consensus 1049 IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~-~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QL 1127 (1228)
T KOG0055|consen 1049 IDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE-EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQL 1127 (1228)
T ss_pred ECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC-CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcC
Confidence 99999999999999999999999999999999999999965 599999999999999999999999999999998 499
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcE---EEEecchhH
Q 005302 639 SGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGLL---VKSLHFLSL 695 (703)
Q Consensus 639 SGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~---~~~~~~~~~ 695 (703)
|||||||||||||++|||+||+|||||||||.++|+.||+||++...- +---|-||.
T Consensus 1128 SGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLST 1187 (1228)
T KOG0055|consen 1128 SGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLST 1187 (1228)
T ss_pred CchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhh
Confidence 999999999999999999999999999999999999999999876543 333455553
No 10
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=4.9e-88 Score=796.31 Aligned_cols=547 Identities=38% Similarity=0.563 Sum_probs=473.0
Q ss_pred CCCCCCCCchHHHHh--hcCcccHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhhHHHH
Q 005302 145 GGSWWSFDDDVEVKI--MAKPVTLWRALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQ-SSEIAVFH 221 (703)
Q Consensus 145 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~-~~d~~~~~ 221 (703)
+..|+.+.|+-..++ ++++.+.+..+++++++.+++++.+..++++.++..++.++.|++++.+++... ..+...+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~ 201 (711)
T TIGR00958 122 AALWAVLSSAGASEKEAEQGQSETADLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALA 201 (711)
T ss_pred HHHHHhhCCccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 345666666422210 022444566788899999999999999999999999999999999888776432 11211222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 222 RNVRLLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNL 301 (703)
Q Consensus 222 ~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~ 301 (703)
....++.++.++..++.++++++..+.+.++..++|.++|++++++|++||++.++||+++|+++|++.+++.+...+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~ 281 (711)
T TIGR00958 202 SAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNV 281 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334444555677788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHH
Q 005302 302 ILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQ 381 (703)
Q Consensus 302 ~i~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~ 381 (703)
++.+++++++++++|+.++|++++++++.+++++++...+.++.++..++.++..++.++.+.|+++|+++||+|+.|++
T Consensus 282 ~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~ 361 (711)
T TIGR00958 282 LLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEG 361 (711)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHH
Confidence 99999999999999999999999999999998888877888888888888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 382 EVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNL 461 (703)
Q Consensus 382 ~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~ 461 (703)
+.++|++..++..+...+.............++..+..++++++|++++.+|++|+|.+++++.|..++..++..+.+.+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~ 441 (711)
T TIGR00958 362 EASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVY 441 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887777666666666666777778888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCccccccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcH
Q 005302 462 SSLMQSVGASEKVFQLMDLMPSDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGK 541 (703)
Q Consensus 462 ~~l~~~~~~~~Ri~dil~~~~e~~~~~~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGK 541 (703)
.+++++..+.+|+.++++.+++.+. .....+.+..+.|+|+||+|+||+++++++|+|+||+|+|||++||||||||||
T Consensus 442 ~~~~~~~~a~~ri~~~l~~~~~~~~-~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGK 520 (711)
T TIGR00958 442 SGMMQAVGASEKVFEYLDRKPNIPL-TGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGK 520 (711)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCC-CCCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCH
Confidence 9999999999999999988765431 111122234568999999999986544689999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHH
Q 005302 542 STLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDF 621 (703)
Q Consensus 542 STLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~ 621 (703)
|||+|+|+|+|+|++|+|++||+|+++++.+++|++|+||+|||++|+|||+|||+++++ ++++|++++|++.|+++||
T Consensus 521 STLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~-~~~~e~i~~al~~a~l~~~ 599 (711)
T TIGR00958 521 STVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT-DTPDEEIMAAAKAANAHDF 599 (711)
T ss_pred HHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCC-CCCHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999976 8899999999999999999
Q ss_pred HHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC--cEEEEecchh
Q 005302 622 IMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG--LLVKSLHFLS 694 (703)
Q Consensus 622 I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~--~~~~~~~~~~ 694 (703)
|++||+||||.+|| .+|||||||||+|||||+|+|+|||||||||+||+++|++|++ ....+ -.+---|-++
T Consensus 600 i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~~~~~TvIiItHrl~ 675 (711)
T TIGR00958 600 IMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRSRASRTVLLIAHRLS 675 (711)
T ss_pred HHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhccCCCeEEEEeccHH
Confidence 99999999999998 4999999999999999999999999999999999999999998 33322 2334446554
No 11
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6e-87 Score=772.92 Aligned_cols=509 Identities=20% Similarity=0.243 Sum_probs=435.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 169 ALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQ--SSEIAVFHRNVRLLILLCVTSGICSGLRGCCFG 246 (703)
Q Consensus 169 ~~~~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~--~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~ 246 (703)
.+++++++.+++++.++.+++++++..++.+..|++++..++... ..+..........+.++.++..++.+++.++..
T Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 9 LTRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999999999999887765321 111111111122233344456677888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005302 247 IANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLC 326 (703)
Q Consensus 247 ~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv 326 (703)
..+.++..++|..+|+|++++|+++|+++++|++++|+++|++.+++.+...+..++.+++++++++++|+.++|+++++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 168 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLI 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 327 TLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGF 406 (703)
Q Consensus 327 ~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~ 406 (703)
+++.+|+.+++...+.+..++..++..+..++.++.+.|.++|+++||+|+.|+.+.+++++..+++.+...+..+....
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK11174 169 LLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFL 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888777777777777777777777889999999999999999999999999999999999999887777766665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005302 407 WNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQL---------TKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQL 477 (703)
Q Consensus 407 ~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l---------~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~di 477 (703)
...+..++..+..+++++++++.+ .|.+|+|.+ ++++.|...+..|+..+...+..+.++..+.+|+.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 327 (588)
T PRK11174 249 SSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTF 327 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555555555545555555544 488888754 3334677788899999999999999999999999999
Q ss_pred hhcCCCCcccccccccc-CCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc
Q 005302 478 MDLMPSDQFMSKGKKLQ-RLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN 556 (703)
Q Consensus 478 l~~~~e~~~~~~~~~~~-~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~s 556 (703)
++.++++.. ......+ ...+.|+|+||+|.|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+| |++
T Consensus 328 l~~~~~~~~-~~~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 328 LETPLAHPQ-QGEKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred HcCCCcccC-CCccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 987664321 1111111 123579999999988743 57999999999999999999999999999999999999 999
Q ss_pred ceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC-
Q 005302 557 GQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD- 635 (703)
Q Consensus 557 G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe- 635 (703)
|+|++||+|+++++.+++|++|+||+|||+||+|||+|||++|++ ++++|++++||+.|+++|||++||+||||.|||
T Consensus 404 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~-~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 404 GSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP-DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC-CCCHHHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 999999999999999999999999999999999999999999976 899999999999999999999999999999999
Q ss_pred -CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 636 -DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 636 -~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
.+|||||||||+|||||++||+||||||||||||++||++|+++|+++
T Consensus 483 G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~ 531 (588)
T PRK11174 483 AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA 531 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999886
No 12
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=8.9e-84 Score=745.58 Aligned_cols=529 Identities=28% Similarity=0.437 Sum_probs=457.6
Q ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 164 VTLWRALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSE-IAVFHRNVRLLILLCVTSGICSGLRG 242 (703)
Q Consensus 164 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d-~~~~~~~~~ll~~l~~~~~~~~~lr~ 242 (703)
.+.|+.+++++++++++++.++..+++.++..++..+.|++++..++.....+ ..........++++.++..++.+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 86 (582)
T PRK11176 7 LSTWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISS 86 (582)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888888888887777777777778887776654322111 11111111112234445667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005302 243 CCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWP 322 (703)
Q Consensus 243 ~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~ 322 (703)
++..+++.++..++|..+|++++++|+++|+++++|++++|+++|++.+++.+...+..++.++++++++++++++++|+
T Consensus 87 ~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (582)
T PRK11176 87 YCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 323 LGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSA 402 (703)
Q Consensus 323 Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~ 402 (703)
+++++++.+++++++...+.+..++..++.++..++..+.+.|.++|+++||++|.|+.+.++|++..+++.+...+..+
T Consensus 167 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T PRK11176 167 LSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888777777777777777777778788999999999999999999999999999999999999998888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 005302 403 AYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMP 482 (703)
Q Consensus 403 ~~~~~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~ 482 (703)
.......+..++..+..++++++|++.+.+|.+|+|+++++..+..++..|+..+...+..+..+..+.+|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~ 326 (582)
T PRK11176 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQ 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 77777777777777888888999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCccccccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEEC
Q 005302 483 SDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILID 562 (703)
Q Consensus 483 e~~~~~~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~id 562 (703)
+.+. +....++..+.|+++||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++|
T Consensus 327 ~~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~ 403 (582)
T PRK11176 327 EKDE--GKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLD 403 (582)
T ss_pred cCCC--CCcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEEC
Confidence 5321 111122234579999999999864 3689999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCCh
Q 005302 563 GFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSG 640 (703)
Q Consensus 563 G~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSG 640 (703)
|+|+++++.+++|++|+||+||+++|+|||+|||++++++++++|+++++++.++++|+|++||+||||.+|| .+|||
T Consensus 404 g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSG 483 (582)
T PRK11176 404 GHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSG 483 (582)
T ss_pred CEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCH
Confidence 9999999999999999999999999999999999999753589999999999999999999999999999999 48999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC---CcEEEEecchhH
Q 005302 641 GQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN---GLLVKSLHFLSL 695 (703)
Q Consensus 641 GQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~---~~~~~~~~~~~~ 695 (703)
||||||+|||||+|+|+||||||||||||++||++|.++|+++ .-++---|-++.
T Consensus 484 GqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~ 541 (582)
T PRK11176 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST 541 (582)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHH
Confidence 9999999999999999999999999999999999999999886 234444465543
No 13
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=5.9e-84 Score=744.86 Aligned_cols=507 Identities=37% Similarity=0.579 Sum_probs=443.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 170 LGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIAN 249 (703)
Q Consensus 170 ~~~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~ 249 (703)
+++++.+.+ ++ .+..+.++.++..++.+..|.++...++... .+.........++.++.++..++.++..+...+.+
T Consensus 4 ~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (567)
T COG1132 4 LRRLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLG 80 (567)
T ss_pred HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566 67 7788888888888899899988876654332 11111122223333444455667777777888888
Q ss_pred HHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005302 250 MILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLM 329 (703)
Q Consensus 250 ~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~ 329 (703)
.++..++|.++|++++++|+++|++.++|++++|+++|++.+++.+......+...+++.++.+++++..+|.+++++++
T Consensus 81 ~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 160 (567)
T COG1132 81 QKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLL 160 (567)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998885555557888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 330 ICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNL 409 (703)
Q Consensus 330 ~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~ 409 (703)
+.|++.+....+.++.++..+..++..++.++.+.|+++|+++||+|+.++.+.+++++..+...+...+..+.......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (567)
T COG1132 161 ILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAP 240 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888777776667777778887899999999999999999999999999999999888888887777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccc
Q 005302 410 CFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSK 489 (703)
Q Consensus 410 ~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~ 489 (703)
....+..+..++++++|++.+..|.+++|.+++|+.|..++..++..+...+..+..+..+.+|+.++++.+++..+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~ 320 (567)
T COG1132 241 LMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD 320 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC
Confidence 77888888899999999999999999999999999999999999999999999999999999999999998775432111
Q ss_pred cccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC
Q 005302 490 GKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV 569 (703)
Q Consensus 490 ~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i 569 (703)
......++|+|+||+|+|++ ++++|+|+||+|+|||++||||||||||||++|+|+|+|+|++|+|++||+|++++
T Consensus 321 --~~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i 396 (567)
T COG1132 321 --PLKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDI 396 (567)
T ss_pred --CCCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhc
Confidence 12234577999999999985 36899999999999999999999999999999999999999999999999999999
Q ss_pred ChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHH
Q 005302 570 DIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIA 647 (703)
Q Consensus 570 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIa 647 (703)
+.+++|++||+|+||++||+|||+|||++|++ ++++||+++||+.|++||||+++|+||||.||| .+|||||||||+
T Consensus 397 ~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~-~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrla 475 (567)
T COG1132 397 SLDSLRKRIGIVSQDPLLFSGTIRENIALGRP-DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLA 475 (567)
T ss_pred CHHHHHHhccEEcccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHH
Confidence 99999999999999999999999999999987 899999999999999999999999999999998 499999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 648 IARAILRDPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 648 LARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
||||++|||+|||||||||+||++||+.|+++++++.
T Consensus 476 iARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~ 512 (567)
T COG1132 476 IARALLRNPPILILDEATSALDTETEALIQDALKKLL 512 (567)
T ss_pred HHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999997543
No 14
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.9e-83 Score=798.65 Aligned_cols=522 Identities=25% Similarity=0.325 Sum_probs=431.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 170 LGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIA--VFHRNVRLLILLCVTSGICSGLRGCCFGI 247 (703)
Q Consensus 170 ~~~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~~--~~~~~~~ll~~l~~~~~~~~~lr~~~~~~ 247 (703)
+.+++++++++++.++.+++++++..++..+.|+++...+......+.. .......++++++++..++.+++.|+..+
T Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~ 892 (1466)
T PTZ00265 813 LRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNV 892 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777788888888888888888888877765432111110 01111223344455667788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchhhcc--cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005302 248 ANMILVKRMRETLYSALLLQDISFFDS--ETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGL 325 (703)
Q Consensus 248 ~~~~l~~~lr~~lf~~Ll~lp~~~fe~--r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lal 325 (703)
.+.++..++|..+|+|++++|++||++ .++|++++|+++|++.+++.+...+..++..+++++++++++++++|++++
T Consensus 893 ~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l 972 (1466)
T PTZ00265 893 IGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAA 972 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999986 789999999999999999999999998899999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHH-----------------HHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHH
Q 005302 326 CTLMICSALAGLMLIYGLYQKKA-AKL-----------------VQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYK 387 (703)
Q Consensus 326 v~l~~~~l~~~i~~~~~~~~~~~-~~~-----------------~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~ 387 (703)
+++++++ ++...+.++.+.. .+. ..+..++.++.+.|+++|+++||+|+.|+++.++|+
T Consensus 973 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~ 1049 (1466)
T PTZ00265 973 VLTGTYF---IFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIE 1049 (1466)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHH
Confidence 7654332 2222332322211 111 122245567889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 388 HWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQS 467 (703)
Q Consensus 388 ~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~ 467 (703)
+..+...+...+.....+.+..+.+++..+..++++|+|++++..|.+|+|++++++.+......++..+...+.++..+
T Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a 1129 (1466)
T PTZ00265 1050 KAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENA 1129 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888777777777777778888888899999999999999999999998877554445677788889999999
Q ss_pred HHHHHHHHHhhhcCCCCcccc-cccc---ccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHH
Q 005302 468 VGASEKVFQLMDLMPSDQFMS-KGKK---LQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKST 543 (703)
Q Consensus 468 ~~~~~Ri~dil~~~~e~~~~~-~~~~---~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKST 543 (703)
..+.+|+.++++.+++.+... .+.. ++...+.|+|+||+|+||++++.+||+|+||+|+|||+|||||||||||||
T Consensus 1130 ~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKST 1209 (1466)
T PTZ00265 1130 KLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKST 1209 (1466)
T ss_pred HHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHH
Confidence 999999999999876432111 1111 122457899999999998654468999999999999999999999999999
Q ss_pred HHHHHhcCCCC------------------------------------------------------CcceEEECCEeCCCC
Q 005302 544 LVNLLLRLYEP------------------------------------------------------TNGQILIDGFPIKEV 569 (703)
Q Consensus 544 LlkLLlgly~p------------------------------------------------------~sG~I~idG~di~~i 569 (703)
|++||+|+|+| ++|+|++||+|++++
T Consensus 1210 l~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~ 1289 (1466)
T PTZ00265 1210 VMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDY 1289 (1466)
T ss_pred HHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhC
Confidence 99999999999 699999999999999
Q ss_pred ChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHH
Q 005302 570 DIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIA 647 (703)
Q Consensus 570 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIa 647 (703)
+.+++|++||||+|||+||+|||+|||+||++ ++++|++++||+.|++||||.+||+||||.||| .+||||||||||
T Consensus 1290 ~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~-~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIa 1368 (1466)
T PTZ00265 1290 NLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE-DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIA 1368 (1466)
T ss_pred CHHHHHhhccEeCCCCccccccHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHH
Confidence 99999999999999999999999999999976 899999999999999999999999999999999 489999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 648 IARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 648 LARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
|||||+|+|+||||||||||||+++|+.|+++|++.. -.+---|-++.
T Consensus 1369 IARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlst 1421 (1466)
T PTZ00265 1369 IARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS 1421 (1466)
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHH
Confidence 9999999999999999999999999999999999862 23445565543
No 15
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=7.5e-83 Score=729.94 Aligned_cols=511 Identities=24% Similarity=0.320 Sum_probs=438.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 181 RWIIFAAFSALIIAALSEIFIPHFLTASIFTAQ-SS-EIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKRMRE 258 (703)
Q Consensus 181 ~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~-~~-d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~ 258 (703)
|+.+..+++++++..++.+..|++++..++... .. +.........++.++.++..++.+++.++....+.++..++|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888889999999999888776431 11 1111111122233444556778899999999999999999999
Q ss_pred HHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005302 259 TLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAGLM 338 (703)
Q Consensus 259 ~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~~~i~ 338 (703)
++|+|++++|.++|+++++||+++|+++|++.+++.+...+..++.++++.++++++++.++|++++++++.+|+..++.
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~ 161 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFM 161 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999988888777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 339 LIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHST 418 (703)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~ 418 (703)
..+.++.++..++..+..++..+.+.|+++|+++||+|+.|+++.++|++..+++.+...+..+.......+..++..+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (529)
T TIGR02857 162 ILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLS 241 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666777888999999999999999999999999999999999998888777766666666666666666
Q ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccccCCCC
Q 005302 419 QVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKLQRLMG 498 (703)
Q Consensus 419 ~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~~~~~~~~~g 498 (703)
.+++++++++.+.+|.+|+|.+++++.|..++..|+..+...+..+..+..+.+|+.++++.++++.. .........+
T Consensus 242 ~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~--~~~~~~~~~~ 319 (529)
T TIGR02857 242 VALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG--KAPVTAAPAP 319 (529)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--CcCCCCCCCC
Confidence 66666778888889999999999999999999999999999999999999999999999986543221 1111111235
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+|+++++.+++|++|
T Consensus 320 ~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 320 SLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred eEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 79999999999865 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCC
Q 005302 579 GFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDP 656 (703)
Q Consensus 579 ~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p 656 (703)
+||+|||++|+|||+|||+++++ ++++|+++++++.++++|||+++|+||||.+|| .+|||||||||+|||||+++|
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIRLARP-DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred EEEcCCCcccCcCHHHHHhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999976 789999999999999999999999999999998 499999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 657 TILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
+|||||||||+||+++|++|.+++++.. -.+---|-++.
T Consensus 478 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 519 (529)
T TIGR02857 478 PLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLAL 519 (529)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 9999999999999999999999999863 23334455543
No 16
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=9.6e-83 Score=735.15 Aligned_cols=521 Identities=20% Similarity=0.243 Sum_probs=444.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhh--HHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 005302 170 LGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQ-SSEI--AVFHR--NVRLLILLCVTSGICSGLRGCC 244 (703)
Q Consensus 170 ~~~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~-~~d~--~~~~~--~~~ll~~l~~~~~~~~~lr~~~ 244 (703)
+++++++.+++++.++.+++++++..++.+..|.++++.++... ..+. ..+.. ....+.++.++..++.++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (574)
T PRK11160 4 LLPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLV 83 (574)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888998999999999999999999998888765321 1110 00100 0112223344566778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005302 245 FGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLG 324 (703)
Q Consensus 245 ~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~La 324 (703)
....+.++..++|.++|+|++++|+++|+++++||+++|+++|++.+++++...+..++.++++.++++++|+.+||+++
T Consensus 84 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 84 SHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 325 LCTLMICSALAGL-MLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAA 403 (703)
Q Consensus 325 lv~l~~~~l~~~i-~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~ 403 (703)
+++++++|++.++ ..++.+..++..++.++..++.++.+.|.++|+++||+||.|+++.+++++..+++.+...+..+.
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988877766544 455566666777777777889999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 005302 404 YGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWL-IYSTWWVGDNLSSLMQSVGASEKVFQLMDLMP 482 (703)
Q Consensus 404 ~~~~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~-~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~ 482 (703)
......+..++..+..++++++|++++ +|.+|+|.+++|+.|.... ..++..+...+..+.++..+.+|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~ 322 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKP 322 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 777777777777777788889999984 8999999999998886553 45777788888899999999999999999876
Q ss_pred CCccccccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEEC
Q 005302 483 SDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILID 562 (703)
Q Consensus 483 e~~~~~~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~id 562 (703)
+...+ +.....+..+.|+++||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++|
T Consensus 323 ~~~~~-~~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~ 400 (574)
T PRK11160 323 EVTFP-TTSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLN 400 (574)
T ss_pred CCCCC-cccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 53211 111112234679999999999864 2579999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCCh
Q 005302 563 GFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSG 640 (703)
Q Consensus 563 G~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSG 640 (703)
|+|+++++.+++|++|+||+||++||+|||+|||+++++ ++++|++++|++.++++|||++ |+||||.+|| .+|||
T Consensus 401 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSg 478 (574)
T PRK11160 401 GQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP-NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSG 478 (574)
T ss_pred CEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCC-ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCH
Confidence 999999999999999999999999999999999999986 8999999999999999999999 9999999999 48999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 641 GQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 641 GQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
||||||+|||||+++|+|||||||||+||+++|++|+++|++.. -.+-.-|-++.
T Consensus 479 GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~ 536 (574)
T PRK11160 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTG 536 (574)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhH
Confidence 99999999999999999999999999999999999999998763 23444565553
No 17
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.1e-82 Score=734.83 Aligned_cols=510 Identities=32% Similarity=0.483 Sum_probs=453.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 171 GKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSS-EIAVFHRNVRLLILLCVTSGICSGLRGCCFGIAN 249 (703)
Q Consensus 171 ~~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~-d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~ 249 (703)
++++++.+++++.++.+++++++..++....|+++...++..... +.........+++++.++..++.+++.++....+
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 3 RRLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667788888888888899999999989998887665433211 1111111122233444556778889999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005302 250 MILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLM 329 (703)
Q Consensus 250 ~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~ 329 (703)
.++..++|..+|+++++.|.++|++.+.|++++|+++|++.+++.+...+..++.+++.++++++++++++|++++++++
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~ 162 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVV 162 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 330 ICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNL 409 (703)
Q Consensus 330 ~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~ 409 (703)
++++++++..++.+..++..++..+..++..+.+.|+++|+++||.+|.|+++.+++++..++..+...+..+.......
T Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (571)
T TIGR02203 163 MLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSP 242 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888777777777877788887889999999999999999999999999999999999999988888877887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccc
Q 005302 410 CFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSK 489 (703)
Q Consensus 410 ~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~ 489 (703)
+.+++..+..++++++|++++.+|.+|+|.++++..|..++..|+..+.+.+..+.++..+.+|+.++++.+++.+. .
T Consensus 243 ~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~--~ 320 (571)
T TIGR02203 243 ITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT--G 320 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC--C
Confidence 77888888888999999999999999999999999999999999999999999999999999999999987665331 1
Q ss_pred cccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC
Q 005302 490 GKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV 569 (703)
Q Consensus 490 ~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i 569 (703)
.....+..++|+++||+|+|+++ ++++|+|+||+|++||++||||+||||||||+|+|+|+|+|++|+|++||+|++++
T Consensus 321 ~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~ 399 (571)
T TIGR02203 321 TRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADY 399 (571)
T ss_pred CCCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhc
Confidence 11112234679999999999865 36899999999999999999999999999999999999999999999999999999
Q ss_pred ChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHH
Q 005302 570 DIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIA 647 (703)
Q Consensus 570 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIa 647 (703)
+.+++|++|+||+|||++|+|||+|||+++++++.++++++++++.+++++++.+||+||||.+|| .+|||||||||+
T Consensus 400 ~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRia 479 (571)
T TIGR02203 400 TLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLA 479 (571)
T ss_pred CHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 999999999999999999999999999999754789999999999999999999999999999998 489999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 648 IARAILRDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 648 LARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
||||++++|+||+||||||+||+++|++|.+.|++.
T Consensus 480 LARall~~~~illLDEpts~LD~~~~~~i~~~L~~~ 515 (571)
T TIGR02203 480 IARALLKDAPILILDEATSALDNESERLVQAALERL 515 (571)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999886
No 18
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.4e-81 Score=726.72 Aligned_cols=523 Identities=28% Similarity=0.340 Sum_probs=438.2
Q ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHH--HHHHHHHHHHHHHHHHHHHH
Q 005302 165 TLWRALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQS-SEIAVFH--RNVRLLILLCVTSGICSGLR 241 (703)
Q Consensus 165 ~~~~~~~~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~-~d~~~~~--~~~~ll~~l~~~~~~~~~lr 241 (703)
.+|+.++++..+.+++++.+...++++++..++.+..|+++...++.... .+..... ....+++++.++..++.+++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (592)
T PRK10790 6 QLWPTLKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQ 85 (592)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888888888999999999999998877653311 1110100 00111222223455667888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005302 242 GCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSW 321 (703)
Q Consensus 242 ~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~ 321 (703)
.++....+.++..++|.++|++++++|+++|+++++|++++|+++|++.+++.+...+..++.+++.++++++++++++|
T Consensus 86 ~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (592)
T PRK10790 86 SLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDW 165 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Q 005302 322 PLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQS 401 (703)
Q Consensus 322 ~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~ 401 (703)
++++++++++|+.+++..++.+..++..++..+..++.++.+.|+++|+++||.||.|+++.+++.+..++..+...+..
T Consensus 166 ~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (592)
T PRK10790 166 RMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTL 245 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888877666666676677777776667888999999999999999999999999999998888777766655
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005302 402 AAYGFW-NLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDL 480 (703)
Q Consensus 402 ~~~~~~-~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~ 480 (703)
+..... ..+..++..+..++++++++. +..|.+|+|.+++++.|...+..|+..+...+..+.++..+.+|+.++++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~ 324 (592)
T PRK10790 246 RLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDG 324 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 544432 233334444433444444444 689999999999999999999999999999999999999999999999987
Q ss_pred CCCCccccccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEE
Q 005302 481 MPSDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQIL 560 (703)
Q Consensus 481 ~~e~~~~~~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~ 560 (703)
++++. ... ..+...+.|+++||+|+|+++ +++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|+
T Consensus 325 ~~~~~--~~~-~~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 399 (592)
T PRK10790 325 PRQQY--GND-DRPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399 (592)
T ss_pred CCccC--CCC-ccCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 65432 111 112234679999999999852 5799999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCC
Q 005302 561 IDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLL 638 (703)
Q Consensus 561 idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~L 638 (703)
+||+|+++++.+++|++|+||+|||+||+|||+|||++|+ ++++++++++++.+|++|+|+++|+||||.+|| .+|
T Consensus 400 idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~--~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~L 477 (592)
T PRK10790 400 LDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477 (592)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC--CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence 9999999999999999999999999999999999999995 689999999999999999999999999999998 489
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC---CcEEEEecchhH
Q 005302 639 SGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN---GLLVKSLHFLSL 695 (703)
Q Consensus 639 SGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~---~~~~~~~~~~~~ 695 (703)
||||||||+|||||+++|+|||||||||+||++||++|.+.|+++ .-.+---|-++.
T Consensus 478 SGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~ 537 (592)
T PRK10790 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLST 537 (592)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHH
Confidence 999999999999999999999999999999999999999999876 234444565543
No 19
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.5e-80 Score=717.53 Aligned_cols=511 Identities=24% Similarity=0.322 Sum_probs=437.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 168 RALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGI 247 (703)
Q Consensus 168 ~~~~~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~ 247 (703)
+.+++++++++++++.+...++++++..++.+..|+++...++...... .......++.++.+...+..++..++...
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (588)
T PRK13657 5 RLYARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG--DIFPLLAAWAGFGLFNIIAGVLVARHADR 82 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677788888888888899999999999999998877765332111 01111111122222233344455555556
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005302 248 ANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCT 327 (703)
Q Consensus 248 ~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~ 327 (703)
...++..+++.++|+|++++|+++|++.+.|++++|+++|++.+.+.+...+...+..++..++.+++++.++|++++++
T Consensus 83 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 162 (588)
T PRK13657 83 LAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVL 162 (588)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677778999999999999999999999999999999999988888888888888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 328 LMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFW 407 (703)
Q Consensus 328 l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~ 407 (703)
++++++++++...+.+..++..++..+..++.++.+.|.++|+++||.||.++.+.+++.+..++..+...+..+.....
T Consensus 163 l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (588)
T PRK13657 163 VVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALA 242 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888887777777777777777777777888999999999999999999999999999999999999888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccc
Q 005302 408 NLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFM 487 (703)
Q Consensus 408 ~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~ 487 (703)
..+..++..+..++++++|++++.+|.+|+|.+++++.|...+..++..+...+..+..+..+.+|+.++++.+++.+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 322 (588)
T PRK13657 243 SVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP 322 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence 77777777778888999999999999999999999999999999999999999999999999999999998875543211
Q ss_pred cccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC
Q 005302 488 SKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK 567 (703)
Q Consensus 488 ~~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~ 567 (703)
.+....++..+.|+++||+|+|+++ +++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|++
T Consensus 323 ~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~ 400 (588)
T PRK13657 323 PGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIR 400 (588)
T ss_pred CCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhh
Confidence 1111112234579999999999853 56999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHH
Q 005302 568 EVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQR 645 (703)
Q Consensus 568 ~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQR 645 (703)
+++.+++|++|+||+|||++|+|||+|||+++++ ++++|+++++++.++++++|.++|+|+||.+|+ .+||||||||
T Consensus 401 ~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QR 479 (588)
T PRK13657 401 TVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQR 479 (588)
T ss_pred hCCHHHHHhheEEEecCcccccccHHHHHhcCCC-CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHH
Confidence 9999999999999999999999999999999976 889999999999999999999999999999998 4899999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
|+|||||+++|+|||||||||+||+++|++|.++|++.
T Consensus 480 ialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~ 517 (588)
T PRK13657 480 LAIARALLKDPPILILDEATSALDVETEAKVKAALDEL 517 (588)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876
No 20
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.6e-83 Score=752.72 Aligned_cols=459 Identities=35% Similarity=0.530 Sum_probs=416.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 226 LLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRN 305 (703)
Q Consensus 226 ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~ 305 (703)
.+..+.++..+..+++..++.+.+.+...++|..+++.++|++++|||+.+.|++.+|+++|++.|++.+.+.+..++..
T Consensus 76 ~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~ 155 (1228)
T KOG0055|consen 76 YFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQL 155 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHH
Confidence 34455556677888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHH
Q 005302 306 VLQGTGALIYLIVLSWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKR 385 (703)
Q Consensus 306 ~l~~i~~li~m~~~s~~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r 385 (703)
+.+++..+++.|++.|+|+++++...|+.++....+.+...+..+..+++.+++.+...|++.++|||.+|+.|+++.+|
T Consensus 156 ~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~r 235 (1228)
T KOG0055|consen 156 LATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIER 235 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHH
Confidence 99999999999999999999999999999988888888777777777777899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 386 YKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLM 465 (703)
Q Consensus 386 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~ 465 (703)
|++.++...+..++...+.++..++..++..+.....+|+|+.+++.|..+.|.++..+.....-...+......+..+.
T Consensus 236 y~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~ 315 (1228)
T KOG0055|consen 236 YSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFA 315 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHh
Confidence 99999999999999888888888888888888899999999999999999999876644333223334445556777888
Q ss_pred HHHHHHHHHHHhhhcCCCCcccc-ccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHH
Q 005302 466 QSVGASEKVFQLMDLMPSDQFMS-KGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTL 544 (703)
Q Consensus 466 ~~~~~~~Ri~dil~~~~e~~~~~-~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL 544 (703)
.+..++.++++.++..|+..... ++.......|.|+|+||+|+||.+++.+||+|+||+||+||+|||||||||||||+
T Consensus 316 ~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~ 395 (1228)
T KOG0055|consen 316 KARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTL 395 (1228)
T ss_pred ccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHH
Confidence 89999999999999888754221 12233346789999999999999988899999999999999999999999999999
Q ss_pred HHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHc
Q 005302 545 VNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMS 624 (703)
Q Consensus 545 lkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~ 624 (703)
++||+|||+|++|+|+|||.|+++++.+++|++||.|.|||.||++||+|||+||+| +++++++++|||+|++||||.+
T Consensus 396 i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~-dat~~~i~~a~k~ana~~fi~~ 474 (1228)
T KOG0055|consen 396 IQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKP-DATREEIEEAAKAANAHDFILK 474 (1228)
T ss_pred HHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCC-cccHHHHHHHHHHccHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999987 9999999999999999999999
Q ss_pred CCCCcccccCCC--CCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 625 LPSGYETLVDDD--LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 625 LP~GydT~vGe~--~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
||+||||.+||+ .|||||||||||||||+|||+||+|||||||||+++|+.|+++|++..+
T Consensus 475 lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~ 537 (1228)
T KOG0055|consen 475 LPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK 537 (1228)
T ss_pred hHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc
Confidence 999999999994 7999999999999999999999999999999999999999999987654
No 21
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.1e-80 Score=716.56 Aligned_cols=514 Identities=33% Similarity=0.506 Sum_probs=445.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 169 ALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQ-SSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGI 247 (703)
Q Consensus 169 ~~~~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~-~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~ 247 (703)
.++.++++.+++++.+...++++++..++.+..|++++..++... ..+...+.....+++++.+...++.+++.++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 5 PLAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788888888888888899999999999998887765421 1111111112222233333455667888899999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005302 248 ANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCT 327 (703)
Q Consensus 248 ~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~ 327 (703)
++.++..++|..++++++++|.++|++.+.|++++|+++|++.+++.+...+..++.+++++++++++++.++|++++++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 328 LMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFW 407 (703)
Q Consensus 328 l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~ 407 (703)
++.+++++++..++.+..++..++..+..++..+.+.|.++|+++||.++.|+++.+++++..++..+...+..+.....
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888877776667777777777777778889999999999999999999999999999999998888777776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccc
Q 005302 408 NLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFM 487 (703)
Q Consensus 408 ~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~ 487 (703)
..+..++..+..++++++|++++.+|.+|+|++++++.|..++..|+..+...+.++..+..+.+|+.++++.+++.+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 66666666667778889999999999999999999999999999999999999999999999999999999876542211
Q ss_pred ccccc-ccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeC
Q 005302 488 SKGKK-LQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI 566 (703)
Q Consensus 488 ~~~~~-~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di 566 (703)
..... ..+..+.|+++||+|+|++++++++|+|+||+|+|||++||+|+||||||||+|+|+|+|+|++|+|++||+|+
T Consensus 325 ~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i 404 (576)
T TIGR02204 325 AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDL 404 (576)
T ss_pred CCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEH
Confidence 11111 11224579999999999864336799999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHH
Q 005302 567 KEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQ 644 (703)
Q Consensus 567 ~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQ 644 (703)
++++.+++|++|+||||||++|+|||+|||+++++ +.++++++++++.+++++++.++|+|+||.+|| .+|||||||
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~-~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPVLFAASVMENIRYGRP-DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HhcCHHHHHHhceEEccCCccccccHHHHHhcCCC-CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 99999999999999999999999999999999976 789999999999999999999999999999998 489999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 645 RIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 645 RIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
||+||||++++|+|||||||||+||+++|+.|.+.+++.
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~ 522 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETL 522 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999886
No 22
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=5.2e-80 Score=713.64 Aligned_cols=523 Identities=24% Similarity=0.295 Sum_probs=444.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 167 WRALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICSGLRGCCFG 246 (703)
Q Consensus 167 ~~~~~~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~ 246 (703)
.+.+++++++++++++.++..++++++..++.++.|++++..++.....+.... ...++++..++..+..+++.++..
T Consensus 4 ~~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 81 (585)
T TIGR01192 4 FQVYVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSDVLP--TLALWAGFGVFNTIAYVLVAREAD 81 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888899999999999999999999999999998887654322111100 011111122223334445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005302 247 IANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLC 326 (703)
Q Consensus 247 ~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv 326 (703)
.++.++..++|.++|+|++++|++||+++++|++++|+++|++.+++.+...+...+..+++.++++++|+.+||+++++
T Consensus 82 ~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 161 (585)
T TIGR01192 82 RLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIV 161 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777899999999999999999999999999999999999998888888888888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 327 TLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGF 406 (703)
Q Consensus 327 ~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~ 406 (703)
+++.+|+++++...+.++.++..+...+..++..+.+.|+++|+++||+||.|+.+.+++++..+++.+...+..+....
T Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (585)
T TIGR01192 162 LMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWAL 241 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888777777777777777777788899999999999999999999999999999999988887777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 005302 407 WNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQF 486 (703)
Q Consensus 407 ~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~ 486 (703)
...+..++..+..++++++|++++.+|++|+|.+++++.|...+..++..+.+.+..+..+..+.+|+.++.+.+++.+.
T Consensus 242 ~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 321 (585)
T TIGR01192 242 ASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE 321 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC
Confidence 66666677777788889999999999999999999999999999999999999999999999999999999987654321
Q ss_pred ccccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeC
Q 005302 487 MSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI 566 (703)
Q Consensus 487 ~~~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di 566 (703)
.......+...+.|+++||+|+|+++ .++++|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+
T Consensus 322 ~~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~ 399 (585)
T TIGR01192 322 PADAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDI 399 (585)
T ss_pred CccCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEh
Confidence 11111112234579999999999853 4699999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHH
Q 005302 567 KEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQ 644 (703)
Q Consensus 567 ~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQ 644 (703)
++++.+++|++++||+||+++|++||+|||+++++ ++++++++++++.+++++++.++|+||||.+|+ .+|||||||
T Consensus 400 ~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~q 478 (585)
T TIGR01192 400 NTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE-GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQ 478 (585)
T ss_pred hhCCHHHHHhheEEEccCCccCcccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHH
Confidence 99999999999999999999999999999999976 789999999999999999999999999999998 489999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC---CcEEEEecchh
Q 005302 645 RIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN---GLLVKSLHFLS 694 (703)
Q Consensus 645 RIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~---~~~~~~~~~~~ 694 (703)
||+|||||+++|++||||||||+||+++|+.|.+.|++. .-.+-.-|-++
T Consensus 479 rl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~ 531 (585)
T TIGR01192 479 RLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLS 531 (585)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChH
Confidence 999999999999999999999999999999999999876 23444445544
No 23
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.3e-78 Score=700.34 Aligned_cols=500 Identities=27% Similarity=0.413 Sum_probs=424.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 005302 191 LIIAALSEIFIPHFLTASIFTAQSS--EIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQD 268 (703)
Q Consensus 191 ~ll~~l~~l~~P~~~~~~i~~~~~~--d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp 268 (703)
.++..++.++.|++++..++..... +...+.....+++++.++..++.+++.++....+.++..++|.++|+|++++|
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3456667778888888776543211 11011111122223333455667788888888899999999999999999999
Q ss_pred chhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 269 ISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYL-IVLSWPLGLCTLMICSALAGLMLIYGLYQKK 347 (703)
Q Consensus 269 ~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m-~~~s~~Lalv~l~~~~l~~~i~~~~~~~~~~ 347 (703)
+++|+++++|++++|+++|++.++..+...+..++..+++.+++++++ +.++|++++++++++|+++++...+.+..++
T Consensus 84 ~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 84 PEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887777777777666666666666 5899999999998888887777667777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 348 AAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGG 427 (703)
Q Consensus 348 ~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~iiil~~g~ 427 (703)
..++.++..++.++.+.|+++|+++||+||.|+.+.+||.+..++..+...+..+...........+..+..++++++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777788999999999999999999999999999999999988888887777776666666666677788889999
Q ss_pred HHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccccCCCCcEEEEEEEE
Q 005302 428 MFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKLQRLMGRIDFVDVSF 507 (703)
Q Consensus 428 ~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~~~~~~~~~g~I~~~nVsF 507 (703)
+++.+|.+|+|.+++++.|..++..|+..+.+.+..+..+..+.+|+.++++.+++.+. .....++..+.|+++||+|
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~--~~~~~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKD--GSEPVPEGRGELDVNIRQF 321 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC--CCCCCCCCCCcEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999987665321 1111222346799999999
Q ss_pred EcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCcc
Q 005302 508 RYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKL 587 (703)
Q Consensus 508 ~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~L 587 (703)
+|+++ +.++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+|+++++.+++|++|+||+|++++
T Consensus 322 ~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 322 TYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred ECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 99864 36799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCC
Q 005302 588 FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEAT 665 (703)
Q Consensus 588 F~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ILILDEaT 665 (703)
|+|||+|||+++++ ++++++++++++.++++|++.++|+||||.+|+ .+|||||||||+|||||+++|+||||||||
T Consensus 401 f~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt 479 (569)
T PRK10789 401 FSDTVANNIALGRP-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479 (569)
T ss_pred ccccHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 99999999999976 789999999999999999999999999999998 489999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhC---CcEEEEecchh
Q 005302 666 SALDAESEHNIKVATLSN---GLLVKSLHFLS 694 (703)
Q Consensus 666 SaLD~~tE~~I~~al~~~---~~~~~~~~~~~ 694 (703)
|+||+++|++|.+.|++. .-.+-.-|-++
T Consensus 480 s~LD~~~~~~i~~~l~~~~~~~tii~itH~~~ 511 (569)
T PRK10789 480 SAVDGRTEHQILHNLRQWGEGRTVIISAHRLS 511 (569)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEecchh
Confidence 999999999999999875 23344455544
No 24
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.3e-77 Score=688.83 Aligned_cols=507 Identities=22% Similarity=0.262 Sum_probs=427.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 178 SKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQ-SSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKRM 256 (703)
Q Consensus 178 ~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~-~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~l 256 (703)
+++++.+...++++++..++.++.|++++..++... ..+..........++++.++..++.+++.++....+.++..++
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888999999999999888765332 1111111111222233344466778899999999999999999
Q ss_pred HHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005302 257 RETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAG 336 (703)
Q Consensus 257 r~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~~~ 336 (703)
|.++|+|++++|++ +.++..+++.+|++.+++.+.......+.+.+..++.+++|+.++|+++++++++++++++
T Consensus 82 r~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~ 156 (544)
T TIGR01842 82 NQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGGAVVLVG 156 (544)
T ss_pred HHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999984 2356788899999999998877444444454455555678899999999999888887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 337 LMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYH 416 (703)
Q Consensus 337 i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~ 416 (703)
+..++.+..++..+...+..++.++.+.|+++|+++||+||.|+.+.+||++..+++.+...+..+..+....+..++..
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (544)
T TIGR01842 157 LALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRI 236 (544)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66566666666666777778889999999999999999999999999999999999888887777777766666667777
Q ss_pred HHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccccCC
Q 005302 417 STQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKLQRL 496 (703)
Q Consensus 417 ~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~~~~~~~~ 496 (703)
+..++++++|++++.+|++|+|.+++++.|...+..|+..+.+.+..+..+..+.+|+.++++.+++... ....+..
T Consensus 237 ~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~~~ 313 (544)
T TIGR01842 237 VLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMPLPEP 313 (544)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCCCCCC
Confidence 7778889999999999999999999999999999999999999999999999999999999987665321 1111223
Q ss_pred CCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhc
Q 005302 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRG 576 (703)
Q Consensus 497 ~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~ 576 (703)
.+.|+++||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|.+||+|+++++.+++|+
T Consensus 314 ~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 314 EGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK 392 (544)
T ss_pred CCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhh
Confidence 4579999999999854 367999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcC
Q 005302 577 RIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILR 654 (703)
Q Consensus 577 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r 654 (703)
+|+||+||+++|++||+|||+++++ ++++++++++++.++++|+++++|+||||.+|+ .+|||||||||+|||||++
T Consensus 393 ~i~~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 393 HIGYLPQDVELFPGTVAENIARFGE-NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred heEEecCCcccccccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998865 789999999999999999999999999999998 4999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchh
Q 005302 655 DPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLS 694 (703)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~ 694 (703)
+|++||||||||+||+++|++|.+.++++. -.+-.-|-++
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~ 515 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS 515 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH
Confidence 999999999999999999999999998762 2445556665
No 25
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-78 Score=655.75 Aligned_cols=494 Identities=29% Similarity=0.412 Sum_probs=418.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 183 IIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEI--AVFH---RNVRLLILLCVTSGICSGLRGCCFGIANMILVKRMR 257 (703)
Q Consensus 183 ~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~--~~~~---~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr 257 (703)
..+.++++.+.+-++....|+++...++.....|. ..+. .......++-++..++..++..++.++.+++.....
T Consensus 31 ~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~ 110 (591)
T KOG0057|consen 31 RVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSS 110 (591)
T ss_pred hHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555568888999998777665421111 1121 222223344455677889999999999999999999
Q ss_pred HHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHH
Q 005302 258 ETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGAL-IYLIVLSWPLGLCTLMICSALAG 336 (703)
Q Consensus 258 ~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~l-i~m~~~s~~Lalv~l~~~~l~~~ 336 (703)
.++|+|++.++.++|.++.+|++.+.+...+..|...+...+..++..++-+.... .+-.-+.+..++++++.+..|..
T Consensus 111 ~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a 190 (591)
T KOG0057|consen 111 SDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAA 190 (591)
T ss_pred HHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhe
Confidence 99999999999999999999999999999988899888777766665554433333 22234577888888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 337 LMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYH 416 (703)
Q Consensus 337 i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~ 416 (703)
..+....++.+..++...+..+....+.|++.+.++||.||.|++|.+||.....++.+...+.....++.+.....++.
T Consensus 191 ~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFs 270 (591)
T KOG0057|consen 191 FTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFS 270 (591)
T ss_pred eEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHH
Confidence 75555566666667777777788889999999999999999999999999999999999999988888888888888888
Q ss_pred HHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccccCC
Q 005302 417 STQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKLQRL 496 (703)
Q Consensus 417 ~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~~~~~~~~ 496 (703)
.....+++.|..-+.+|.+|+|+++....+..|+..+++.|+..+.++.++....+.++...+.+.+.++ ...++...
T Consensus 271 v~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~--~~~~i~~~ 348 (591)
T KOG0057|consen 271 VALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE--AALPIELF 348 (591)
T ss_pred HHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh--ccCCcccC
Confidence 8888888899888999999999999999999999999999999999999988888777665444332221 11223335
Q ss_pred CCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhc
Q 005302 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRG 576 (703)
Q Consensus 497 ~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~ 576 (703)
.+.|+|+||+|.|++ +++||+++||+|++||+|||||+|||||||++++|+||++ ++|+|+|||+|+++++++++|+
T Consensus 349 ~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~ 425 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQ 425 (591)
T ss_pred CCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhh
Confidence 678999999999985 3679999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHhcC
Q 005302 577 RIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD--LLSGGQKQRIAIARAILR 654 (703)
Q Consensus 577 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~--~LSGGQkQRIaLARAL~r 654 (703)
.|||||||..||++||.+||.||++ ++++||+.++||.|++||-|.++|+||+|.|||+ .||||||||++||||++|
T Consensus 426 ~Ig~VPQd~~LFndTIl~NI~YGn~-sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK 504 (591)
T KOG0057|consen 426 SIGVVPQDSVLFNDTILYNIKYGNP-SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK 504 (591)
T ss_pred heeEeCCcccccchhHHHHhhcCCC-CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc
Confidence 9999999999999999999999998 9999999999999999999999999999999994 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 005302 655 DPTILILDEATSALDAESEHNIKVATLS 682 (703)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~al~~ 682 (703)
||||+++|||||+||.+||+.|.+++.+
T Consensus 505 da~Il~~DEaTS~LD~~TE~~i~~~i~~ 532 (591)
T KOG0057|consen 505 DAPILLLDEATSALDSETEREILDMIMD 532 (591)
T ss_pred CCCeEEecCcccccchhhHHHHHHHHHH
Confidence 9999999999999999999999999987
No 26
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.8e-76 Score=739.71 Aligned_cols=489 Identities=20% Similarity=0.291 Sum_probs=402.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 005302 189 SALIIAALSEIFIPHFLTASIFTAQ-SSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQ 267 (703)
Q Consensus 189 ~~~ll~~l~~l~~P~~~~~~i~~~~-~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~l 267 (703)
++.++.+++.+..|+++..+..... ..+..........+.++.++..++.+++.++....+.+...++|.++++++++.
T Consensus 972 ~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~ 1051 (1522)
T TIGR00957 972 FLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRS 1051 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3334455556667777665543211 000000111122344455556667777888888889999999999999999999
Q ss_pred CchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 268 DISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAGLMLIYGLYQKK 347 (703)
Q Consensus 268 p~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~~~i~~~~~~~~~~ 347 (703)
|++||+++++|++++|+++|++.+++.+...+..++..++..++.+++++..+|+++++++..++++.++..+|.+..+.
T Consensus 1052 p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 1131 (1522)
T TIGR00957 1052 PMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQ 1131 (1522)
T ss_pred ChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998899988776666666666556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 348 AAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGG 427 (703)
Q Consensus 348 ~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~iiil~~g~ 427 (703)
..+...+..+...+++.|+++|+++||+||.|+++.+++.+..+...+..........++....+++ ..++++++|+
T Consensus 1132 ~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 1208 (1522)
T TIGR00957 1132 LKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECV---GNCIVLFAAL 1208 (1522)
T ss_pred HHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 6666666678889999999999999999999998888888877776665544443344444333333 2334555566
Q ss_pred HHHH-hCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccccc-cc--cCCCCcEEEE
Q 005302 428 MFIM-RGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGK-KL--QRLMGRIDFV 503 (703)
Q Consensus 428 ~lv~-~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~~~-~~--~~~~g~I~~~ 503 (703)
+.+. .|.+++|.+.+++.|..++..++..++..+.++..+..+.+|+.++.+.++|+....++. .+ .+..|.|+|+
T Consensus 1209 ~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~ 1288 (1522)
T TIGR00957 1209 FAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFR 1288 (1522)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEE
Confidence 6665 588999999999999999999999999999999999999999999998876643111111 11 1345789999
Q ss_pred EEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEcc
Q 005302 504 DVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQ 583 (703)
Q Consensus 504 nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Q 583 (703)
||+|+|+++ .++||+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+|+++++++++|++|++|||
T Consensus 1289 nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQ 1367 (1522)
T TIGR00957 1289 NYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQ 1367 (1522)
T ss_pred EEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECC
Confidence 999999865 3679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCCEEEE
Q 005302 584 EPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILIL 661 (703)
Q Consensus 584 d~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ILIL 661 (703)
||+||+|||||||..+ . +++||++++|++.|+++|+|.++|+||||.||| .+|||||||||||||||+|+|+||||
T Consensus 1368 dp~LF~gTIr~NLdp~-~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiL 1445 (1522)
T TIGR00957 1368 DPVLFSGSLRMNLDPF-S-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVL 1445 (1522)
T ss_pred CCcccCccHHHHcCcc-c-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999965 2 689999999999999999999999999999998 59999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhC
Q 005302 662 DEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 662 DEaTSaLD~~tE~~I~~al~~~ 683 (703)
|||||+||.+||+.|+++|++.
T Consensus 1446 DEaTSalD~~Te~~Iq~~l~~~ 1467 (1522)
T TIGR00957 1446 DEATAAVDLETDNLIQSTIRTQ 1467 (1522)
T ss_pred ECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 27
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-79 Score=651.20 Aligned_cols=497 Identities=27% Similarity=0.391 Sum_probs=402.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH-HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 191 LIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLL-ILLCV------TSGICSGLRGCCFGIANMILVKRMRETLYSA 263 (703)
Q Consensus 191 ~ll~~l~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll-~~l~~------~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~ 263 (703)
.++.-++....|.+..+.++.....+. +..+..+. +.+-+ +.++++-+|+++...+.+-...++..++|+|
T Consensus 224 l~i~rli~~~~pi~~k~iv~~ltap~~--~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrH 301 (790)
T KOG0056|consen 224 LIIGRLINVSLPILSKWIVDELTAPDT--FQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRH 301 (790)
T ss_pred HHHHHHHhhhhHHhHHHHHHhhcCcch--hhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHH
Confidence 344455666788887776554332211 11111111 11111 2356778888888888888889999999999
Q ss_pred HHhCCchhhcccCHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005302 264 LLLQDISFFDSETVGDLTSRLGSDCQQVS--RVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAGLMLIY 341 (703)
Q Consensus 264 Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~--~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~~~i~~~~ 341 (703)
+..+++.|+-.|++|+++.-++...+.+. +.+.-.+...+.|+...+..+ ...++||.++++++.+.+|+.+....
T Consensus 302 lh~LSlrwHL~rrtGeVLrvmdrGtssvtll~yvVF~i~PtllDl~va~vYF--~~~Fn~wFgLIVfl~m~lY~~~Ti~i 379 (790)
T KOG0056|consen 302 LHNLSLRWHLNRRTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAMVYF--FIKFNIWFGLIVFLMMLLYCYVTIKI 379 (790)
T ss_pred HHhhceeeeecccccceeehhccCcchhhHHHHHHhhcccHHHHhhhhhhhh--hhhHhHHHHHHHHHHHHHHhheeeee
Confidence 99999999999999999987765544433 223333334444444333322 23579999999999999998774433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 342 GLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVI 421 (703)
Q Consensus 342 ~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~ii 421 (703)
...+.+..+....+..+......+++-+.+|||-||+|+++.+||++...++.+.+.+......+.+...+.+.++..++
T Consensus 380 TeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~ 459 (790)
T KOG0056|consen 380 TEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLA 459 (790)
T ss_pred ehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhh
Confidence 33333444443333333444556889999999999999999999999999999988887766677777777777777776
Q ss_pred HHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccccCCCCcEE
Q 005302 422 AVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKLQRLMGRID 501 (703)
Q Consensus 422 il~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~~~~~~~~~g~I~ 501 (703)
.-.+.+|+|..+.+|+|+.+-|..|..|+..|+..++..+..++......|+++|++++++|..+.+...+.....|.|+
T Consensus 460 gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~ 539 (790)
T KOG0056|consen 460 GSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIE 539 (790)
T ss_pred hhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEE
Confidence 67778888999999999999999999999999999999999999999999999999999888654333334444678999
Q ss_pred EEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEE
Q 005302 502 FVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFV 581 (703)
Q Consensus 502 ~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V 581 (703)
|+||+|.|+++ ++||+||||+++||+++|+|||||+||||++++|.|||+.++|.|.|||+||+.+...++|++||+|
T Consensus 540 fsnvtF~Y~p~--k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVV 617 (790)
T KOG0056|consen 540 FSNVTFAYDPG--KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVV 617 (790)
T ss_pred EEEeEEecCCC--CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcc
Confidence 99999999864 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHhcCCCCEE
Q 005302 582 GQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD--LLSGGQKQRIAIARAILRDPTIL 659 (703)
Q Consensus 582 ~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~--~LSGGQkQRIaLARAL~r~p~IL 659 (703)
|||..||++||.+||.|++| ++++||+.+||+.|++||-|.++|+||+|.|||+ +||||+|||+||||+++|+|.|+
T Consensus 618 PQDtvLFNdTI~yNIryak~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iI 696 (790)
T KOG0056|consen 618 PQDTVLFNDTILYNIRYAKP-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSII 696 (790)
T ss_pred cCcceeecceeeeheeecCC-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEE
Confidence 99999999999999999987 9999999999999999999999999999999995 89999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhCCc---EEEEecchh
Q 005302 660 ILDEATSALDAESEHNIKVATLSNGL---LVKSLHFLS 694 (703)
Q Consensus 660 ILDEaTSaLD~~tE~~I~~al~~~~~---~~~~~~~~~ 694 (703)
+|||||||||..||+.|++++.++-. -+---|-||
T Consensus 697 lLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLS 734 (790)
T KOG0056|consen 697 LLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLS 734 (790)
T ss_pred EEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeeh
Confidence 99999999999999999999986533 233345554
No 28
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.1e-75 Score=729.17 Aligned_cols=521 Identities=27% Similarity=0.391 Sum_probs=444.9
Q ss_pred HHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 172 KMWDLV-SKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANM 250 (703)
Q Consensus 172 ~l~~~~-~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~ 250 (703)
++++|. +.+++.++.+++++++..++..+.|.+++..++.....+. ......++++++++..++.+++.++..+.+.
T Consensus 49 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 126 (1466)
T PTZ00265 49 LPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN--VNDIIFSLVLIGIFQFILSFISSFCMDVVTT 126 (1466)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344545 4567778888888888888888888777777653311111 1111233444555667789999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005302 251 ILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMI 330 (703)
Q Consensus 251 ~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~ 330 (703)
++..++|.++|+|++++|++||++...|++.+|+++|++.+++.+...+..++.+++++++.++++|.++|+|+++++++
T Consensus 127 ~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~ 206 (1466)
T PTZ00265 127 KILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCV 206 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 331 CSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLC 410 (703)
Q Consensus 331 ~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~ 410 (703)
+|+++++..++.++.++..+..++..++.++.+.|++.|+++||+|+.|+.+.+||++..+.+.+...+.....++...+
T Consensus 207 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~ 286 (1466)
T PTZ00265 207 FPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGM 286 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988887778888777777777777889999999999999999999999999999999999888888887777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 005302 411 FNMLYHSTQVIAVLIGGMFIMRG--------NITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMP 482 (703)
Q Consensus 411 ~~~l~~~~~iiil~~g~~lv~~G--------~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~ 482 (703)
..++..+..++++|+|++++.+| .+|+|.+++++.+.......+..+...+..+..+..+.+|+.++++.++
T Consensus 287 ~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~ 366 (1466)
T PTZ00265 287 INGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKP 366 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77777788889999999999986 5899999888766555445555666778888999999999999999877
Q ss_pred CCccccccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEE-
Q 005302 483 SDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILI- 561 (703)
Q Consensus 483 e~~~~~~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~i- 561 (703)
+.....++...+. .+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 367 ~~~~~~~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~ 445 (1466)
T PTZ00265 367 LVENNDDGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIIN 445 (1466)
T ss_pred CCCCCCCCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEe
Confidence 6431111122222 24799999999998654457999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCC----------------------------------------
Q 005302 562 DGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCT---------------------------------------- 601 (703)
Q Consensus 562 dG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~---------------------------------------- 601 (703)
||.|+++++.+++|++||+|+|+|.||++||+|||++|..
T Consensus 446 ~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (1466)
T PTZ00265 446 DSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDM 525 (1466)
T ss_pred CCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhc
Confidence 6799999999999999999999999999999999999731
Q ss_pred ----------------CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCCEEEEeC
Q 005302 602 ----------------QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDE 663 (703)
Q Consensus 602 ----------------~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ILILDE 663 (703)
++++++++++||+.+++++||.+||+||||.+|+ .+|||||||||+|||||+++|+||||||
T Consensus 526 ~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDE 605 (1466)
T PTZ00265 526 SNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDE 605 (1466)
T ss_pred ccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1357899999999999999999999999999998 4999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 664 ATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 664 aTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
|||+||+++|+.|+++|+++. -.+-.-|-++.
T Consensus 606 pTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~ 642 (1466)
T PTZ00265 606 ATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST 642 (1466)
T ss_pred cccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 999999999999999999873 34566687764
No 29
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.1e-75 Score=673.86 Aligned_cols=511 Identities=18% Similarity=0.168 Sum_probs=415.9
Q ss_pred HHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 169 ALGKMWDLVS-KDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGI 247 (703)
Q Consensus 169 ~~~~l~~~~~-~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~ 247 (703)
.+++++++++ ++++.++.+++++++..+..+..|.+++..+......+. ....+++++.++..++.+++.++...
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQ----GSLFSFGGLCLLALLFRIGADIFPAY 79 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888 999999999999999999999999887766542211110 11222344455566788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005302 248 ANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCT 327 (703)
Q Consensus 248 ~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~ 327 (703)
.+.++..++|.++|+|++++|++||+++++||+++|+++|++.+++++.. +..++.++++.++++++|++++|.+++++
T Consensus 80 ~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~ 158 (555)
T TIGR01194 80 AGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAIT 158 (555)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998864 77788888899999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 328 LMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEK--QEVKRYKHWLGKLADINLRQSAAYG 405 (703)
Q Consensus 328 l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~--~~~~r~~~~~~~~~~~~~r~~~~~~ 405 (703)
++.+|+.+++..+..++.++..++.++..++.++.+.|.++|++++|+|+.++ .+.+++.+..+++.+...+..+...
T Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T TIGR01194 159 ISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFI 238 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 88887776665555555556666666667889999999999999999999954 5567788877777776655544443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-
Q 005302 406 FWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSD- 484 (703)
Q Consensus 406 ~~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~- 484 (703)
....+..++..+...+.+++|++. |.+|+|++++|+.|...+..|+..+++.+.++..+..+.+|+.++++.++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~ 315 (555)
T TIGR01194 239 AAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPE 315 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 333333333333333344444443 7999999999999999999999999999999999999999999998642211
Q ss_pred -cc-ccc-cc----cccCCCCcEEEEEEEEEcCCCC--CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 005302 485 -QF-MSK-GK----KLQRLMGRIDFVDVSFRYSSRE--MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT 555 (703)
Q Consensus 485 -~~-~~~-~~----~~~~~~g~I~~~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~ 555 (703)
.. .++ .. ......+.|+++||+|+|++.+ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~ 395 (555)
T TIGR01194 316 PELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ 395 (555)
T ss_pred ccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 10 010 10 1112246799999999998531 246999999999999999999999999999999999999999
Q ss_pred cceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC
Q 005302 556 NGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD 635 (703)
Q Consensus 556 sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe 635 (703)
+|+|++||+|+++++.+++|+++++|+||+++|++|++||+ .+ ++++++++++++.+++++++.++|+||||.
T Consensus 396 ~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~-~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~--- 468 (555)
T TIGR01194 396 EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GE-HASLDNAQQYLQRLEIADKVKIEDGGFSTT--- 468 (555)
T ss_pred CcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---cc-chhHHHHHHHHHHcCCchhhcccccccCCc---
Confidence 99999999999999999999999999999999999999995 24 788999999999999999999999999995
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHH-h----CCcEEEEecchh
Q 005302 636 DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATL-S----NGLLVKSLHFLS 694 (703)
Q Consensus 636 ~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~-~----~~~~~~~~~~~~ 694 (703)
.+|||||||||+||||++++|+|||||||||+||+++|+.|.+.+. . ..-.+---|-++
T Consensus 469 ~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~ 532 (555)
T TIGR01194 469 TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ 532 (555)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence 7899999999999999999999999999999999999999988763 2 233444556655
No 30
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-75 Score=639.25 Aligned_cols=457 Identities=23% Similarity=0.315 Sum_probs=405.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 226 LLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRN 305 (703)
Q Consensus 226 ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~ 305 (703)
.++++.++..++.+.+.+.....+..+-..+|..+++|+.++++.+-.+.++|+..+.+...++.++.+++..++.....
T Consensus 45 ~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~ 124 (559)
T COG4988 45 LLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLS 124 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHH
Q 005302 306 VLQGTGALIYLIVLSWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKR 385 (703)
Q Consensus 306 ~l~~i~~li~m~~~s~~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r 385 (703)
.+.....++.++++||.-++|.++.+|++.+.+...++..++..+...+..+..+++|.+.++|+.|+|.||..++..++
T Consensus 125 ~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~ 204 (559)
T COG4988 125 AIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEER 204 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHH
Confidence 99999999999999999999999999999999888888888777777777899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 386 YKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMR-GNITAEQLTKFILYSEWLIYSTWWVGDNLSSL 464 (703)
Q Consensus 386 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~iiil~~g~~lv~~-G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l 464 (703)
..+..+++++..++.-+..-....+..++..+...++..+.+...+. |++|....+.++...--|..|+..++..+..-
T Consensus 205 i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~ 284 (559)
T COG4988 205 IRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAA 284 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999998888765444444666776666555555444555556 89999888888888888899999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCccccccccccC-CCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHH
Q 005302 465 MQSVGASEKVFQLMDLMPSDQFMSKGKKLQR-LMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKST 543 (703)
Q Consensus 465 ~~~~~~~~Ri~dil~~~~e~~~~~~~~~~~~-~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKST 543 (703)
+.+..+.+++..+++.|.+............ ....|+++|++|+|+++ +++++|+||+++|||++||||+|||||||
T Consensus 285 ~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKST 362 (559)
T COG4988 285 AAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKST 362 (559)
T ss_pred hhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHH
Confidence 9999999999999998876442111111111 22345566999999975 48999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHH
Q 005302 544 LVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIM 623 (703)
Q Consensus 544 LlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~ 623 (703)
|+++|+|+++|++|+|.+||+|+++++.+.||+++++|+|+|+||+|||||||+++++ ++++|++.+|++.+++.||+.
T Consensus 363 Ll~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~-~~s~e~i~~al~~a~l~~~v~ 441 (559)
T COG4988 363 LLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARP-DASDEEIIAALDQAGLLEFVP 441 (559)
T ss_pred HHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCC-cCCHHHHHHHHHHhcHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999987 899999999999999999999
Q ss_pred cCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcE
Q 005302 624 SLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGLL 686 (703)
Q Consensus 624 ~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~ 686 (703)
. |+|+||.||| ++|||||+||+++||||++++++++|||||||||.|||+.|.++|.++.+-
T Consensus 442 ~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ 505 (559)
T COG4988 442 K-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ 505 (559)
T ss_pred C-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC
Confidence 9 9999999999 499999999999999999999999999999999999999999999876553
No 31
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2e-74 Score=724.05 Aligned_cols=500 Identities=22% Similarity=0.284 Sum_probs=378.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 184 IFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSA 263 (703)
Q Consensus 184 l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~ 263 (703)
++..+++.++..++.+..|++++.+.+........ .......+.++.++..++.+++.++....+.+...++|.+++++
T Consensus 917 ~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~-~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ 995 (1622)
T PLN03130 917 VMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHG-PLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGS 995 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556666667777766554322111110 11112234445556677888999999999999999999999999
Q ss_pred HHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 264 LLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAGLMLIYGL 343 (703)
Q Consensus 264 Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~~~i~~~~~~ 343 (703)
++++|++||+++++|++++|+++|++.+++.+...+..++..++..++.+++++.++|...++++....++..+..++.+
T Consensus 996 ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~ 1075 (1622)
T PLN03130 996 ILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQS 1075 (1622)
T ss_pred HHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888888888888888888874433332222222222334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 005302 344 YQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNM-LYHSTQVIA 422 (703)
Q Consensus 344 ~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~-l~~~~~iii 422 (703)
..++..+......+...+++.|+++|+++||+|+.++++.+++.+..+. ..+.............. +..+..+++
T Consensus 1076 ~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~----~~~~~~~~~~~~~wl~~~l~~~~~~~i 1151 (1622)
T PLN03130 1076 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDN----NIRFTLVNMSSNRWLAIRLETLGGLMI 1151 (1622)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555556778899999999999999999987655544444433 33332222211111111 122223333
Q ss_pred HHHHHHHHHhCC---------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccc-ccc
Q 005302 423 VLIGGMFIMRGN---------ITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSK-GKK 492 (703)
Q Consensus 423 l~~g~~lv~~G~---------itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~-~~~ 492 (703)
++.|.+.+..+. .++|.++ +|...+...+..+...+..+.....+.+|+.++.+.++|+....+ ..+
T Consensus 1152 ~~~~~~~v~~~~~~~~~~~~~~~~G~~l---s~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~ 1228 (1622)
T PLN03130 1152 WLTASFAVMQNGRAENQAAFASTMGLLL---SYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRP 1228 (1622)
T ss_pred HHHHHHHHHcccccccchhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCC
Confidence 344444455432 3445444 455556666777777778888999999999999988776431111 111
Q ss_pred c--cCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC
Q 005302 493 L--QRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD 570 (703)
Q Consensus 493 ~--~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~ 570 (703)
+ .+..|.|+|+||+|+|+++ .++||+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+|+++++
T Consensus 1229 ~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~ 1307 (1622)
T PLN03130 1229 PPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFG 1307 (1622)
T ss_pred CCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCC
Confidence 1 1345789999999999754 368999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHH
Q 005302 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAI 648 (703)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaL 648 (703)
++++|++||+|||||+||+|||||||.+++ +++||++++|++.|+++|||.+||+||||.||| .+|||||||||||
T Consensus 1308 l~~LR~~IsiVpQdp~LF~GTIreNLd~~~--~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaL 1385 (1622)
T PLN03130 1308 LMDLRKVLGIIPQAPVLFSGTVRFNLDPFN--EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSL 1385 (1622)
T ss_pred HHHHHhccEEECCCCccccccHHHHhCcCC--CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999994 679999999999999999999999999999999 4999999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchh
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLS 694 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~ 694 (703)
||||+|+|+|||||||||+||.+||+.|+++|++.. -.+---|-++
T Consensus 1386 ARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~ 1434 (1622)
T PLN03130 1386 ARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 1434 (1622)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChH
Confidence 999999999999999999999999999999999763 2333445554
No 32
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=6.4e-74 Score=718.42 Aligned_cols=459 Identities=18% Similarity=0.240 Sum_probs=381.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 233 TSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGA 312 (703)
Q Consensus 233 ~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~ 312 (703)
+..+...++.+.....+.+...++|.++|+++++.|++||+++++|++++|+++|++.+++.+...+..++..++.+++.
T Consensus 1010 ~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~ 1089 (1560)
T PTZ00243 1010 LGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSS 1089 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666556666677889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHH
Q 005302 313 LIYLIVLSWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGK 392 (703)
Q Consensus 313 li~m~~~s~~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~ 392 (703)
+++++..+|.+.++++..+.++..+...|.+..+...+......+...+++.|+++|+++||+|+.|+++.+++.+..+.
T Consensus 1090 li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~ 1169 (1560)
T PTZ00243 1090 ILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDV 1169 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHH
Confidence 99999888865544443333444445556666666666666667888999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 393 LADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFI--MRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGA 470 (703)
Q Consensus 393 ~~~~~~r~~~~~~~~~~~~~~l~~~~~iiil~~g~~lv--~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~ 470 (703)
..+...+......+......++..+..+++.+++...+ ..+.+++|.+..++.|..++..++.+++..+.++.....+
T Consensus 1170 ~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s 1249 (1560)
T PTZ00243 1170 VYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNS 1249 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776665545555555555555554444444444443 3456899999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCcccc-------------------------cc-c----cccCCCCcEEEEEEEEEcCCCCCccccee
Q 005302 471 SEKVFQLMDLMPSDQFMS-------------------------KG-K----KLQRLMGRIDFVDVSFRYSSREMVPVLQH 520 (703)
Q Consensus 471 ~~Ri~dil~~~~e~~~~~-------------------------~~-~----~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~ 520 (703)
.+|+.++.+.+++++... .. . +.++..|.|+|+||+|+|+++ .++||+|
T Consensus 1250 ~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~ 1328 (1560)
T PTZ00243 1250 VERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRG 1328 (1560)
T ss_pred HHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeec
Confidence 999999997543321000 00 0 011134789999999999864 3679999
Q ss_pred eeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCC
Q 005302 521 VNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGC 600 (703)
Q Consensus 521 isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~ 600 (703)
+||+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+|+++++.+++|++||+|||||+||+|||||||..+
T Consensus 1329 vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~- 1407 (1560)
T PTZ00243 1329 VSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPF- 1407 (1560)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCC-CCEEEEeCCCCCCCHHHHHHHH
Q 005302 601 TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD-PTILILDEATSALDAESEHNIK 677 (703)
Q Consensus 601 ~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~-p~ILILDEaTSaLD~~tE~~I~ 677 (703)
. +++|+++++|++.|+++|+|.++|+||||.||| .+|||||||||||||||+|+ |+|||||||||+||++||+.|+
T Consensus 1408 ~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq 1486 (1560)
T PTZ00243 1408 L-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQ 1486 (1560)
T ss_pred c-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHH
Confidence 3 789999999999999999999999999999999 59999999999999999996 8999999999999999999999
Q ss_pred HHHHhCC---cEEEEecchh
Q 005302 678 VATLSNG---LLVKSLHFLS 694 (703)
Q Consensus 678 ~al~~~~---~~~~~~~~~~ 694 (703)
++|++.- -.+---|-++
T Consensus 1487 ~~L~~~~~~~TvI~IAHRl~ 1506 (1560)
T PTZ00243 1487 ATVMSAFSAYTVITIAHRLH 1506 (1560)
T ss_pred HHHHHHCCCCEEEEEeccHH
Confidence 9998752 2333445544
No 33
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.8e-74 Score=717.90 Aligned_cols=452 Identities=22% Similarity=0.304 Sum_probs=360.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 226 LLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRN 305 (703)
Q Consensus 226 ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~ 305 (703)
.+.++.++..++.+++.++....+.+...++|.+++++++++|++||+++++|++++|+++|++.+++.+...+..++..
T Consensus 955 ~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~ 1034 (1495)
T PLN03232 955 VYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQ 1034 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence 34455556677888999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHH
Q 005302 306 VLQGTGALIYLIVLSWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKR 385 (703)
Q Consensus 306 ~l~~i~~li~m~~~s~~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r 385 (703)
++..++.+++++.+++...++++....++.+...++.+..++..+......+...+++.|+++|+++||+||.++++.++
T Consensus 1035 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~ 1114 (1495)
T PLN03232 1035 LWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKI 1114 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHH
Confidence 88888888888877764433332222222222334444445555555666678889999999999999999998866555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCc----C-HHHHHHHHHHHHHHHHHHHHHHH
Q 005302 386 YKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMR-GNI----T-AEQLTKFILYSEWLIYSTWWVGD 459 (703)
Q Consensus 386 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~iiil~~g~~lv~~-G~i----t-vG~l~afi~y~~~~~~~~~~l~~ 459 (703)
+.+..+...+..........+... .+..+..+++++.|+..+.. |.+ . .+.+..++.|...+..++.++..
T Consensus 1115 ~~~~~~~~~~~~~~~~~~~~wl~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~ 1191 (1495)
T PLN03232 1115 NGKSMDNNIRFTLANTSSNRWLTI---RLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLR 1191 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444333322211111111111 11222233333444444543 432 1 23344467788888889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCcccccc-ccc--cCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcC
Q 005302 460 NLSSLMQSVGASEKVFQLMDLMPSDQFMSKG-KKL--QRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGL 536 (703)
Q Consensus 460 ~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~~-~~~--~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~ 536 (703)
.+.++..+..+.+|+.++.+.++|++...++ .++ .+..|.|+|+||+|+|+++ .++||+|+||+|+|||+|||||+
T Consensus 1192 ~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~ 1270 (1495)
T PLN03232 1192 QASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGR 1270 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECC
Confidence 9999999999999999999887764321111 111 1345789999999999754 36899999999999999999999
Q ss_pred CCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHh
Q 005302 537 SGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQA 616 (703)
Q Consensus 537 SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A 616 (703)
||||||||+++|+|+|+|++|+|+|||+|+++++.+++|++|++|||||+||+|||||||.+++ +++||++++|++.|
T Consensus 1271 SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~--~~sdeei~~al~~a 1348 (1495)
T PLN03232 1271 TGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS--EHNDADLWEALERA 1348 (1495)
T ss_pred CCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC--CCCHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999983 68999999999999
Q ss_pred chHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 617 YAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 617 ~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
+++|+|+++|+||||.||| .+|||||||||||||||+|+|+|||||||||+||++||+.|+++|++.
T Consensus 1349 ~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~ 1417 (1495)
T PLN03232 1349 HIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREE 1417 (1495)
T ss_pred CCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999998 499999999999999999999999999999999999999999999976
No 34
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-73 Score=617.83 Aligned_cols=499 Identities=20% Similarity=0.240 Sum_probs=407.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 180 DRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRL----LILLCVTSGICSGLRGCCFGIANMILVKR 255 (703)
Q Consensus 180 ~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~~~~~~~~~l----l~~l~~~~~~~~~lr~~~~~~~~~~l~~~ 255 (703)
+|+.+.++++++++..+..+.+-...+|.+......... ...++.+ .=.++++.++..|...........++...
T Consensus 14 ~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~-~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~ 92 (573)
T COG4987 14 HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLA-YIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLSA 92 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 667777777777777766665544445554221111110 1111111 11234455666677777777778889999
Q ss_pred HHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005302 256 MRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALA 335 (703)
Q Consensus 256 lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~~ 335 (703)
+|..+|+++...++.-..+.+.||+++|+..|++.+++.+-..+...+..++...++.+.+.++||++++...+.+.+..
T Consensus 93 lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~l 172 (573)
T COG4987 93 LRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLL 172 (573)
T ss_pred HHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888888888888999999987776655544
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 336 GL-MLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNML 414 (703)
Q Consensus 336 ~i-~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~l 414 (703)
++ ...+.++.++..+...+.++...+.+.|.+.|..+.+.||+++.+.+.+.+....+.+.+.+.++...+.+.+..++
T Consensus 173 li~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~ 252 (573)
T COG4987 173 LIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLI 252 (573)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 55666667777777777789999999999999999999999999999999988888888888887777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcCCCCccccccccc
Q 005302 415 YHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVG-DNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKL 493 (703)
Q Consensus 415 ~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~-~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~~~~~ 493 (703)
.++..+.++...+..+-.|..+.-+..+++........++..+. ..+..+.+...++.|+.++.++++|..++ ..+.
T Consensus 253 ~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~--~~~~ 330 (573)
T COG4987 253 AGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP--DEQT 330 (573)
T ss_pred HHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC--cccc
Confidence 76665534444455566777774333333333233344555555 66678888899999999999999886643 1112
Q ss_pred cCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHH
Q 005302 494 QRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW 573 (703)
Q Consensus 494 ~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~ 573 (703)
+.....++++||||+||++ ++++|+|+||++++||+|||+|+|||||||++++|+|.|+|++|+|..+|.|+.+++.+.
T Consensus 331 ~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~ 409 (573)
T COG4987 331 ATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQA 409 (573)
T ss_pred CCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhh
Confidence 2212279999999999986 478999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHH
Q 005302 574 LRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARA 651 (703)
Q Consensus 574 lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARA 651 (703)
+|+.|++++|.++||+||+|||+.+++| +++||+++++++++|++++++++|+||||.+|| .+||||||||++|||+
T Consensus 410 ~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~-~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~ 488 (573)
T COG4987 410 LRETISVLTQRVHLFSGTLRDNLRLANP-DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARA 488 (573)
T ss_pred HHHHHhhhccchHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHH
Confidence 9999999999999999999999999987 899999999999999999999999999999999 4999999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 652 ILRDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
|++|.|++||||||.+||++||++|.+.|.+.
T Consensus 489 LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~ 520 (573)
T COG4987 489 LLHDAPLWLLDEPTEGLDPITERQVLALLFEH 520 (573)
T ss_pred HHcCCCeEEecCCcccCChhhHHHHHHHHHHH
Confidence 99999999999999999999999999998754
No 35
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=5.8e-74 Score=617.33 Aligned_cols=492 Identities=23% Similarity=0.312 Sum_probs=433.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 005302 177 VSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLI-------LLCVTSGICSGLRGCCFGIAN 249 (703)
Q Consensus 177 ~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~-------~l~~~~~~~~~lr~~~~~~~~ 249 (703)
+...++.++.+.+++.+.-++.+..|.|+.++ .|.++.+.+...|+ ++.+.++++.++|+.+..+++
T Consensus 18 l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQV------yDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig 91 (580)
T COG4618 18 LAANRRAFIGVGLFSAVINLLALTGPLYMLQV------YDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIG 91 (580)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHH------HhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777778888888888888999997666 56666555444333 233446778999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005302 250 MILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLM 329 (703)
Q Consensus 250 ~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~ 329 (703)
.++..++...+|...++.|.. .+..|+=.+-+ .|.++++++++..-...+.|.=-.-++++++|.++|++++++++
T Consensus 92 ~~lD~~L~~~v~~a~~~~~l~---~~~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ 167 (580)
T COG4618 92 ERLDRQLNGPVFAASFSAPLL---RRGSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALA 167 (580)
T ss_pred HHHHHHhccHHHHHHHhhHHh---hcCCCccccch-hhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999877755 34556555555 48899999999977777888777788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 330 ICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNL 409 (703)
Q Consensus 330 ~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~ 409 (703)
.+.+++.+.++.....++..++..+...+.+....-+.++.++|++.|+.....+||.+....+.+.+.+.+-..+.+..
T Consensus 168 ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~ 247 (580)
T COG4618 168 GAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGA 247 (580)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 98888777666655555555555555778888999999999999999999999999999999999988888878888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccc
Q 005302 410 CFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSK 489 (703)
Q Consensus 410 ~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~ 489 (703)
+...+-.+.+..++.+|+|+|++|++|.|+++|-....+....|+...+..|.++..++.+.+|+.+.+.+.|+.. .
T Consensus 248 ~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~---~ 324 (580)
T COG4618 248 LSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA---E 324 (580)
T ss_pred HHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc---C
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999887653 2
Q ss_pred cccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC
Q 005302 490 GKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV 569 (703)
Q Consensus 490 ~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i 569 (703)
..+.|..+|.+.++++++.-|+. ++++++|+||+++|||.+|||||||||||||.++|.|.++|++|.|.+||-|++++
T Consensus 325 ~m~LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qW 403 (580)
T COG4618 325 RMPLPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQW 403 (580)
T ss_pred CCCCCCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcC
Confidence 34455567899999999987765 48999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHH
Q 005302 570 DIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIA 647 (703)
Q Consensus 570 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIa 647 (703)
+.+.+-++|||.|||..||+|||+|||+=|++ ++|+|+|.+||+.|+.||.|.++|+||||.||| ..|||||||||+
T Consensus 404 d~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~-~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIa 482 (580)
T COG4618 404 DREQLGRHIGYLPQDVELFDGTIAENIARFGE-EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIA 482 (580)
T ss_pred CHHHhccccCcCcccceecCCcHHHHHHhccc-cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHH
Confidence 99999999999999999999999999998866 899999999999999999999999999999999 499999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 648 IARAILRDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 648 LARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
||||||.+|.+++||||.||||.+-|+.+.++|.+.
T Consensus 483 LARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~ 518 (580)
T COG4618 483 LARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA 518 (580)
T ss_pred HHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999998654
No 36
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-74 Score=606.93 Aligned_cols=443 Identities=30% Similarity=0.437 Sum_probs=397.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 005302 241 RGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYL-IVL 319 (703)
Q Consensus 241 r~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m-~~~ 319 (703)
|..++...++....++-.+.|.|+.++++.|.-++.+|.+...+......|+..+...+..++..++-+....+++ ..|
T Consensus 2 r~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 4455667788888889999999999999999999999999877777766777777777776666666655544444 569
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 005302 320 SWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLR 399 (703)
Q Consensus 320 s~~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r 399 (703)
+|+.++++++.+.+|++++......+....+...++.++.++...+++-+.+++|.||.|+++..||++..+.+.+...+
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 99999999999999988866655666666777777788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005302 400 QSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMD 479 (703)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~ 479 (703)
......+.+.....++.....++.+.++..+.+|++|+|+++...+|..|+..|..-++..+.++.++....|+.+|+.+
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 88777788877778888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccccc-CCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcce
Q 005302 480 LMPSDQFMSKGKKLQ-RLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQ 558 (703)
Q Consensus 480 ~~~e~~~~~~~~~~~-~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~ 558 (703)
.+.+..+.++.++.. ...|.+.|+||+|.|.++ .++|+|+||++++|+++|||||||+||||+++||.|||++++|.
T Consensus 242 ~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~ 319 (497)
T COG5265 242 VEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319 (497)
T ss_pred cchhhccCCCCccccccccceEEEEEEEeecccc--chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence 888765433333333 345789999999999864 78999999999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCC--
Q 005302 559 ILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD-- 636 (703)
Q Consensus 559 I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~-- 636 (703)
|.+||+|+++...+++|+.||+||||..||++||..||.||.| ++++||+.+|++.|++|+||+++|+||||.|||+
T Consensus 320 I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~-~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP-DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc-cccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 9999999999999999999999999999999999999999987 9999999999999999999999999999999995
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcE
Q 005302 637 LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGLL 686 (703)
Q Consensus 637 ~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~ 686 (703)
.||||||||+||||+++|+|+||+|||||||||..||++|+.+|+....-
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~ 448 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAG 448 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCC
Confidence 89999999999999999999999999999999999999999999876543
No 37
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=9.5e-70 Score=680.16 Aligned_cols=455 Identities=19% Similarity=0.246 Sum_probs=373.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 233 TSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGA 312 (703)
Q Consensus 233 ~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~ 312 (703)
+..++.+++.++....+.+...+++.++++++++.|++||++.++|++++|+++|++.+++.+...+..++..++++++.
T Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~ 1016 (1490)
T TIGR01271 937 SVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGA 1016 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHH
Q 005302 313 LIYLIVLSWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGK 392 (703)
Q Consensus 313 li~m~~~s~~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~ 392 (703)
++++++++|+++++++..+++++++..+|.+..++..+......+...+++.|+++|+.+||+|+.++.+.+++.+..+.
T Consensus 1017 l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~ 1096 (1490)
T TIGR01271 1017 IFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNL 1096 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999988765555444444445556666666666666667888999999999999999999999999999998886
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 393 LADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASE 472 (703)
Q Consensus 393 ~~~~~~r~~~~~~~~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~ 472 (703)
.............++.....++..+..+++. ...+..+.++.|.+..+++|...+..++..+...+.++.....+.+
T Consensus 1097 ~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~---~l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~e 1173 (1490)
T TIGR01271 1097 HTANWFLYLSTLRWFQMRIDIIFVFFFIAVT---FIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVS 1173 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554333332333333333332222111111 1112223345666666677777888888889999999999999999
Q ss_pred HHHHhhhcCCCCcccccc--------------cc---ccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEc
Q 005302 473 KVFQLMDLMPSDQFMSKG--------------KK---LQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAG 535 (703)
Q Consensus 473 Ri~dil~~~~e~~~~~~~--------------~~---~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG 535 (703)
|+.++.+.++|+....+. .. ..+..|.|+|+||+|+|+++ .++||+|+||+|+|||+|||||
T Consensus 1174 Ri~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvG 1252 (1490)
T TIGR01271 1174 RVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLG 1252 (1490)
T ss_pred HHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEEC
Confidence 999999877664311110 00 11335789999999999864 4789999999999999999999
Q ss_pred CCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHH
Q 005302 536 LSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQ 615 (703)
Q Consensus 536 ~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~ 615 (703)
+||||||||+++|+|+|+ ++|+|+|||+|+++++++++|++|++|||||+||+|||||||..++ +.+|+++++|++.
T Consensus 1253 rSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~--~~tdeei~~aL~~ 1329 (1490)
T TIGR01271 1253 RTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE--QWSDEEIWKVAEE 1329 (1490)
T ss_pred CCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc--CCCHHHHHHHHHH
Confidence 999999999999999997 7999999999999999999999999999999999999999998773 6799999999999
Q ss_pred hchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEe
Q 005302 616 AYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSL 690 (703)
Q Consensus 616 A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~ 690 (703)
++++++|.++|+||||.||| .+|||||||||||||||+|+|+|||||||||+||.+||+.|++.|++.- -++---
T Consensus 1330 ~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~Ia 1409 (1490)
T TIGR01271 1330 VGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSE 1409 (1490)
T ss_pred CCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 99999999999999999998 4999999999999999999999999999999999999999999998752 233344
Q ss_pred cchh
Q 005302 691 HFLS 694 (703)
Q Consensus 691 ~~~~ 694 (703)
|-++
T Consensus 1410 HRl~ 1413 (1490)
T TIGR01271 1410 HRVE 1413 (1490)
T ss_pred cCHH
Confidence 5544
No 38
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1e-68 Score=615.40 Aligned_cols=499 Identities=18% Similarity=0.156 Sum_probs=380.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 173 MWDLVSKDRWIIFAAFSALIIAALSEIFI-PHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMI 251 (703)
Q Consensus 173 l~~~~~~~~~~l~~~~~~~ll~~l~~l~~-P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~ 251 (703)
++++++++++.++..++++++..++.+.. |++.+..++.... +. .....+.+++++..++.+++.++...++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (547)
T PRK10522 4 LRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-SL----LVLPEFLGLLLLLMAVTLGSQLALTTLGHH 78 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888888888888888775 5555555432211 10 011112222333345677888899999999
Q ss_pred HHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005302 252 LVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMIC 331 (703)
Q Consensus 252 l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~~ 331 (703)
+..++|.++|+|++++|+++|+++++||+++|+++|++.++..+. .+..++.+++++++++++|+.++|++++++++.+
T Consensus 79 ~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~ 157 (547)
T PRK10522 79 FVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIWM 157 (547)
T ss_pred HHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998765 4677888999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 332 SALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTE---KQEVKRYKHWLGKLADINLRQSAAYGFWN 408 (703)
Q Consensus 332 ~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e---~~~~~r~~~~~~~~~~~~~r~~~~~~~~~ 408 (703)
|+.+++..++.++.++..++..+..++.++.+.|.++|+++++ ++.+ +.+.+++++..+++.+...+.........
T Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (547)
T PRK10522 158 AVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAV 236 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 8877776666666666666767778899999999999999996 4443 34567777777776665555443333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccc
Q 005302 409 LCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMS 488 (703)
Q Consensus 409 ~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~ 488 (703)
.....+..+...+.+++++.. +..+.+.+.++..+...+..|+..+...+.+++.+..+.+|+.++.+.+++++. .
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~-~ 312 (547)
T PRK10522 237 NWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF-P 312 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-c
Confidence 222221111111122222211 223444444455555556789999999999999999999999999765443221 1
Q ss_pred ccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC
Q 005302 489 KGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE 568 (703)
Q Consensus 489 ~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~ 568 (703)
+.... +..+.|+++||+|+|+++ +++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+|+++
T Consensus 313 ~~~~~-~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 389 (547)
T PRK10522 313 RPQAF-PDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTA 389 (547)
T ss_pred ccccc-CcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCC
Confidence 11111 113579999999999843 579999999999999999999999999999999999999999999999999999
Q ss_pred CChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005302 569 VDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (703)
Q Consensus 569 i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (703)
++.+++|++|+||+||+++|+||++|| + + +.++++++++++.+++++++.. |+|. +++.+|||||||||+|
T Consensus 390 ~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~-~~~~~~~~~~~~~~~l~~~~~~-~~~~---~~G~~LSgGq~qRl~l 460 (547)
T PRK10522 390 EQPEDYRKLFSAVFTDFHLFDQLLGPE---G-K-PANPALVEKWLERLKMAHKLEL-EDGR---ISNLKLSKGQKKRLAL 460 (547)
T ss_pred CCHHHHhhheEEEecChhHHHHhhccc---c-C-chHHHHHHHHHHHcCCchhhhc-cccC---CCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999 3 3 6788999989988888887753 5553 2456899999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchh
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLS 694 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~ 694 (703)
|||++++|++||||||||+||+++|++|.+.+.+. .-.+-.-|-++
T Consensus 461 ARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~ 511 (547)
T PRK10522 461 LLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH 511 (547)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH
Confidence 99999999999999999999999999999888632 23444456554
No 39
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-68 Score=642.99 Aligned_cols=489 Identities=23% Similarity=0.348 Sum_probs=407.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 188 FSALIIAALSEIFIPHFLTASIFTAQSSEI--AVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALL 265 (703)
Q Consensus 188 ~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~--~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll 265 (703)
+++.++.+++....-+++..+......... ...........+++++..++..+|+......+.+....+...++++++
T Consensus 823 ~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Il 902 (1381)
T KOG0054|consen 823 LLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSIL 902 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555444322110000 011223444556666778888899999999999999999999999999
Q ss_pred hCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 266 LQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAGLMLIYGLYQ 345 (703)
Q Consensus 266 ~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~~~i~~~~~~~~ 345 (703)
|-|++|||..++|.|+|||++|++.+.+.+...+..++...+..++.++++....|+..++++.+.+++..+..+|.+..
T Consensus 903 rapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~ts 982 (1381)
T KOG0054|consen 903 RAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATS 982 (1381)
T ss_pred hCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998888877777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 346 KKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLI 425 (703)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~iiil~~ 425 (703)
+...+.....++...+++.|++.|..|||+|+.|+++.+++.+..+.......-......++..-..++. .++++..
T Consensus 983 ReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig---~~~v~~~ 1059 (1381)
T KOG0054|consen 983 RELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLG---NLVVLIA 1059 (1381)
T ss_pred HHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 7777777677788899999999999999999999999999988888877754443333333333333332 2333333
Q ss_pred HHHHHHh--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccc-cc--ccccCCCCcE
Q 005302 426 GGMFIMR--GNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMS-KG--KKLQRLMGRI 500 (703)
Q Consensus 426 g~~lv~~--G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~-~~--~~~~~~~g~I 500 (703)
+...++. +.++.|...-.++|..++.+.+++++....++.....+.||+.++.+.|+|.+... +. ++..|..|.|
T Consensus 1060 al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I 1139 (1381)
T KOG0054|consen 1060 ALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEI 1139 (1381)
T ss_pred HHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeE
Confidence 3333332 22778988888999999999999999999999999999999999999877722111 12 2234568999
Q ss_pred EEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEE
Q 005302 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF 580 (703)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~ 580 (703)
+|+|++.+|.++ .++||+||||+|+|||||+|||++|||||||++.|.|+.+|.+|+|.|||+|+.++++.++|+++++
T Consensus 1140 ~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsI 1218 (1381)
T KOG0054|consen 1140 EFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSI 1218 (1381)
T ss_pred EEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCee
Confidence 999999999876 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCCE
Q 005302 581 VGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTI 658 (703)
Q Consensus 581 V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~I 658 (703)
+||||+||+||+|+|+--++ +.+|+++|+|++.|++.++|.++|.|+|+.|.| .|+|-||||-+||||||+|+++|
T Consensus 1219 IPQdPvLFsGTvR~NLDPf~--e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skI 1296 (1381)
T KOG0054|consen 1219 IPQDPVLFSGTVRFNLDPFD--EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKI 1296 (1381)
T ss_pred eCCCCceecCccccccCccc--ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCE
Confidence 99999999999999998773 789999999999999999999999999999988 59999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh
Q 005302 659 LILDEATSALDAESEHNIKVATLS 682 (703)
Q Consensus 659 LILDEaTSaLD~~tE~~I~~al~~ 682 (703)
|+|||||+++|++|+..||++|++
T Consensus 1297 LvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1297 LVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred EEEecccccCChHHHHHHHHHHHH
Confidence 999999999999999999999986
No 40
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.4e-67 Score=655.55 Aligned_cols=480 Identities=19% Similarity=0.198 Sum_probs=366.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 005302 177 VSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICSGLR---GCCFGIANMILV 253 (703)
Q Consensus 177 ~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~~lr---~~~~~~~~~~l~ 253 (703)
++.+++.++.++++.++..++.++.|++++..+......+.. . ....+..++.++..+..... .+....++.++.
T Consensus 296 ~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir 373 (1495)
T PLN03232 296 NNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPA-W-VGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLR 373 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777888888889999888776433222211 1 01111111111111112221 112246677778
Q ss_pred HHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005302 254 KRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSA 333 (703)
Q Consensus 254 ~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~~~l 333 (703)
..++..+|+|++++|..++++.++|++++++++|++.+++.+ ..+..++...+.++++++++ .+.+++.+++++++
T Consensus 374 ~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l---~~~lg~~~l~~~~v 449 (1495)
T PLN03232 374 STLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLL---YQQLGVASLFGSLI 449 (1495)
T ss_pred HHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHH
Confidence 888889999999999999999999999999999999999976 44555554454444444433 23455544433333
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 334 LAG---LMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLC 410 (703)
Q Consensus 334 ~~~---i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~ 410 (703)
+++ +..++.++.++.+++..+..++..+.+.|.++|+++||.|++|+.+.+++.+..++..+...+..........+
T Consensus 450 ~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~ 529 (1495)
T PLN03232 450 LFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFI 529 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 23445566677777777778889999999999999999999999998888887766555544444333322221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccccc
Q 005302 411 FNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKG 490 (703)
Q Consensus 411 ~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~~ 490 (703)
.... ...+.++++|++++.+|.+|+|.+++++++...+..|+..+...+..+.++..+.+|+.++++.+++... . .
T Consensus 530 ~~~~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~-~-~ 605 (1495)
T PLN03232 530 LNSI--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA-Q-N 605 (1495)
T ss_pred HHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-c-c
Confidence 1111 1123357889999999999999999999999999999999999999999999999999999987654221 1 1
Q ss_pred ccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC
Q 005302 491 KKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD 570 (703)
Q Consensus 491 ~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~ 570 (703)
.......+.|+++||+|+|++++++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|.+.
T Consensus 606 ~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~---------- 675 (1495)
T PLN03232 606 PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV---------- 675 (1495)
T ss_pred CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE----------
Confidence 1111123479999999999864346899999999999999999999999999999999999999999873
Q ss_pred hHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHH
Q 005302 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAI 648 (703)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaL 648 (703)
.+|++||||+|+|+||+|||||||+||+ +.|+|+++++++.|+++++++.||+||||.||| .+|||||||||+|
T Consensus 676 --~~~~~Iayv~Q~p~Lf~gTIreNI~fg~--~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 751 (1495)
T PLN03232 676 --VIRGSVAYVPQVSWIFNATVRENILFGS--DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSM 751 (1495)
T ss_pred --EecCcEEEEcCccccccccHHHHhhcCC--ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHH
Confidence 4788999999999999999999999995 479999999999999999999999999999999 4999999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVAT 680 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al 680 (703)
|||+|++|+|++|||||||||+++|++|.+.+
T Consensus 752 ARAly~~~~IlLLDEptSaLD~~t~~~I~~~~ 783 (1495)
T PLN03232 752 ARAVYSNSDIYIFDDPLSALDAHVAHQVFDSC 783 (1495)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHH
Confidence 99999999999999999999999999996653
No 41
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.2e-66 Score=648.90 Aligned_cols=480 Identities=19% Similarity=0.215 Sum_probs=364.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHH
Q 005302 176 LVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICS-GLRGCC--FGIANMIL 252 (703)
Q Consensus 176 ~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~-~lr~~~--~~~~~~~l 252 (703)
+++.+++.++..+++.++..++.++.|++++..+......+.. .. ...+.+++.++..+.. ....+. ...++.++
T Consensus 295 l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 372 (1622)
T PLN03130 295 LNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPA-WI-GYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRL 372 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777788888888899999887776432221211 10 1111111111111111 111121 33667778
Q ss_pred HHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-
Q 005302 253 VKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMIC- 331 (703)
Q Consensus 253 ~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~~- 331 (703)
...++..+|+|++++|..++++.++|++++++++|++.+++.+ ..+..++...+.+++++++++. .+++.+++++
T Consensus 373 r~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~-~~l~~l~~~pl~ii~~~~lL~~---~lg~~~l~g~~ 448 (1622)
T PLN03130 373 RSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQIC-QQLHTLWSAPFRIIIAMVLLYQ---QLGVASLIGSL 448 (1622)
T ss_pred HHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 8888889999999999999999999999999999999999987 4455556555555555554443 3333333322
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 332 --SALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNL 409 (703)
Q Consensus 332 --~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~ 409 (703)
++.+.+..++.++.++.+++..+..++..+.+.|.++|+++||.|++|+.+.+++.+..++..+...+.. ....
T Consensus 449 v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~----~~~~ 524 (1622)
T PLN03130 449 MLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQ----LLSA 524 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 2223333445566666677777777888999999999999999999999888888776665444333332 2222
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccc
Q 005302 410 CFNMLYHST--QVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFM 487 (703)
Q Consensus 410 ~~~~l~~~~--~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~ 487 (703)
+..++.... .+.++++|++.+..|.+|+|.+++++++...+..|+..+...+..+.++..+.+|+.++++.+++...
T Consensus 525 ~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~- 603 (1622)
T PLN03130 525 FNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL- 603 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-
Confidence 222322222 34567789999999999999999999999999999999999999999999999999999976543211
Q ss_pred cccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc-ceEEECCEeC
Q 005302 488 SKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN-GQILIDGFPI 566 (703)
Q Consensus 488 ~~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~s-G~I~idG~di 566 (703)
.. ....+..+.|+++||+|+|++++++++|+|+||+|++||++|||||||||||||+++|+|+|+|++ |+|.
T Consensus 604 ~~-~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~------ 676 (1622)
T PLN03130 604 PN-PPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV------ 676 (1622)
T ss_pred cC-CcccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEE------
Confidence 11 111112347999999999986434679999999999999999999999999999999999999999 9997
Q ss_pred CCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHH
Q 005302 567 KEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQ 644 (703)
Q Consensus 567 ~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQ 644 (703)
+|++||||+|+|+||+|||||||+||.+ .|+|+++++++.|+++++|+.||+|++|.||| .+|||||||
T Consensus 677 -------l~~~Iayv~Q~p~LfngTIreNI~fg~~--~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQ 747 (1622)
T PLN03130 677 -------IRGTVAYVPQVSWIFNATVRDNILFGSP--FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQ 747 (1622)
T ss_pred -------EcCeEEEEcCccccCCCCHHHHHhCCCc--ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHH
Confidence 4779999999999999999999999954 68999999999999999999999999999999 489999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHH-HHHh
Q 005302 645 RIAIARAILRDPTILILDEATSALDAESEHNIKV-ATLS 682 (703)
Q Consensus 645 RIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~-al~~ 682 (703)
||+||||+|++|+|+||||||||||+++|++|.+ .++.
T Consensus 748 RIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~ 786 (1622)
T PLN03130 748 RVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKD 786 (1622)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhH
Confidence 9999999999999999999999999999998854 4543
No 42
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=3.5e-66 Score=604.54 Aligned_cols=515 Identities=16% Similarity=0.127 Sum_probs=418.2
Q ss_pred HHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH----HHHHHHHHHH
Q 005302 166 LWRALGKMWDLVSKDRW-----IIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRL----LILLCVTSGI 236 (703)
Q Consensus 166 ~~~~~~~l~~~~~~~~~-----~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~~~~~~~~~l----l~~l~~~~~~ 236 (703)
..+.+.+++++++++++ .++.++++.++..++.+..|++.+..++.....+...+...... +++..++..+
T Consensus 75 ~~~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~ 154 (659)
T TIGR00954 75 FLGKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSA 154 (659)
T ss_pred HHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888876 57778888888889999999998877654322222111111111 1222233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 237 CSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYL 316 (703)
Q Consensus 237 ~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m 316 (703)
..+++.++....+.++..+++...|++....+..+|++ ++|++.+|+++|++.+++.+...+..++..++.+++++++|
T Consensus 155 ~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L 233 (659)
T TIGR00954 155 IKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKL 233 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777888888888888888888899987 78999999999999999999999999999999999888888
Q ss_pred HH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHH
Q 005302 317 IV-LSWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLAD 395 (703)
Q Consensus 317 ~~-~s~~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~ 395 (703)
+. ++|.+++++++.+|+..++..++.+..++..++.++..++..+...|.++|+++||.|+.|+.+.+++++..+++.+
T Consensus 234 ~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~ 313 (659)
T TIGR00954 234 LTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVE 313 (659)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 86 99999999999999888888888888888888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-h----CCcCHHHHHH-HHHH---HHHHHHHHHHHHHHHHHH
Q 005302 396 INLRQSAAYGFWNLCFNMLYHS--TQVIAVLIGGMFIM-R----GNITAEQLTK-FILY---SEWLIYSTWWVGDNLSSL 464 (703)
Q Consensus 396 ~~~r~~~~~~~~~~~~~~l~~~--~~iiil~~g~~lv~-~----G~itvG~l~a-fi~y---~~~~~~~~~~l~~~~~~l 464 (703)
...+..+....+..+..++... ..++.++.|+..+. . |.+|+|.+++ |+.| ..++..++..+++.+.++
T Consensus 314 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i 393 (659)
T TIGR00954 314 HLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDM 393 (659)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887887777777776542 23333334443332 2 7899999877 7766 456688999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCcc-------ccc--c--------------ccccCCCCcEEEEEEEEEcCCCCCcccceee
Q 005302 465 MQSVGASEKVFQLMDLMPSDQF-------MSK--G--------------KKLQRLMGRIDFVDVSFRYSSREMVPVLQHV 521 (703)
Q Consensus 465 ~~~~~~~~Ri~dil~~~~e~~~-------~~~--~--------------~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~i 521 (703)
+++.++.+|+.++++.+++... ..+ + .......+.|+++||+|+|+++ +++|+|+
T Consensus 394 ~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~i 471 (659)
T TIGR00954 394 TRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESL 471 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeeecc
Confidence 9999999999999976433110 000 0 0011123569999999999743 4799999
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCC
Q 005302 522 NISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCT 601 (703)
Q Consensus 522 sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~ 601 (703)
||+|++||++||+||||||||||+++|+|+|+|++|+|.+|+ |++++||+|+|++|++|++|||.++..
T Consensus 472 sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~ 540 (659)
T TIGR00954 472 SFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDS 540 (659)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCC
Confidence 999999999999999999999999999999999999999874 678999999999999999999999741
Q ss_pred ------CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHH
Q 005302 602 ------QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD-DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEH 674 (703)
Q Consensus 602 ------~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe-~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~ 674 (703)
++.++++++++++.+++++++.. |.||||..+. .+||||||||++|||||+++|++||||||||+||+++|+
T Consensus 541 ~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~ 619 (659)
T TIGR00954 541 SEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEG 619 (659)
T ss_pred hhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 24678899999999999999988 9999999877 599999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCc-EEEEecchhH
Q 005302 675 NIKVATLSNGL-LVKSLHFLSL 695 (703)
Q Consensus 675 ~I~~al~~~~~-~~~~~~~~~~ 695 (703)
.+.+.+++.+. .+-.-|-+++
T Consensus 620 ~l~~~l~~~~~tvI~isH~~~~ 641 (659)
T TIGR00954 620 YMYRLCREFGITLFSVSHRKSL 641 (659)
T ss_pred HHHHHHHHcCCEEEEEeCchHH
Confidence 99999988653 5566677664
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3e-60 Score=596.26 Aligned_cols=485 Identities=18% Similarity=0.213 Sum_probs=369.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 176 LVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHR--NVRLLILLCVTSGICSGLRGCCFGIANMILV 253 (703)
Q Consensus 176 ~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~~~~~~--~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~ 253 (703)
+++.+++.++.++++.++..++.++.|++++..+......+...... ....++++.++.+++.....+....++.++.
T Consensus 311 l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 390 (1522)
T TIGR00957 311 LYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIK 390 (1522)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777788888888999999999887764321111111000 0111112222233333333444567788999
Q ss_pred HHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHH
Q 005302 254 KRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWP-LGLCTLMICS 332 (703)
Q Consensus 254 ~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~-Lalv~l~~~~ 332 (703)
..++..+|+|+++++..++++.++|++++++++|++.+++.. ..+..++...+.+++++++ +++.+. .+++.+++++
T Consensus 391 ~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~l-l~~~~g~~~l~~l~~~~ 468 (1522)
T TIGR00957 391 TAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYF-LWLNLGPSVLAGVAVMV 468 (1522)
T ss_pred HHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998855 3444445444444444443 444433 3333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 333 ALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFN 412 (703)
Q Consensus 333 l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~ 412 (703)
+++.+...+.+..++.+++..+..++..+.+.|.++|+++||.+++|+.+.+++++..++..+...+.. ....+..
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~----~~~~~~~ 544 (1522)
T TIGR00957 469 LMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSA----YLHAVGT 544 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 444445556666777777777778889999999999999999999999888888777665444333222 2222233
Q ss_pred HHHHHHH--HHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccc
Q 005302 413 MLYHSTQ--VIAVLIGGMFIMR--GNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMS 488 (703)
Q Consensus 413 ~l~~~~~--iiil~~g~~lv~~--G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~ 488 (703)
++..... +.++.++++.+.. +.++.+..++.+++...+..|+..+...+..+.++..+.+|+.++++.++++....
T Consensus 545 ~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~ 624 (1522)
T TIGR00957 545 FTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSI 624 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc
Confidence 3322222 2233456677764 56899999998899999999999999999999999999999999998765432110
Q ss_pred ccccccC-CCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC
Q 005302 489 KGKKLQR-LMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK 567 (703)
Q Consensus 489 ~~~~~~~-~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~ 567 (703)
......+ ..+.|+++|++|+|+++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 625 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---- 699 (1522)
T TIGR00957 625 ERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---- 699 (1522)
T ss_pred cccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC----
Confidence 1111111 12379999999999854 36799999999999999999999999999999999999999999999997
Q ss_pred CCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHH
Q 005302 568 EVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQR 645 (703)
Q Consensus 568 ~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQR 645 (703)
+||||+|+|++|++||+|||.+|. +.++++.+++++.+++.+++..+|+|++|.+|+ .+||||||||
T Consensus 700 ---------~i~yv~Q~~~l~~~Ti~eNI~~g~--~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqR 768 (1522)
T TIGR00957 700 ---------SVAYVPQQAWIQNDSLRENILFGK--ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQR 768 (1522)
T ss_pred ---------EEEEEcCCccccCCcHHHHhhcCC--ccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHH
Confidence 599999999999999999999995 467889999999999999999999999999999 4999999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLS 682 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~ 682 (703)
|+||||+|++|+|++||||||+||+++++.|.+.+.+
T Consensus 769 iaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~ 805 (1522)
T TIGR00957 769 VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIG 805 (1522)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999864
No 44
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=6.7e-57 Score=564.49 Aligned_cols=494 Identities=19% Similarity=0.201 Sum_probs=375.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 177 VSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLL---ILLCVTSGICSGLRGCCFGIANMILV 253 (703)
Q Consensus 177 ~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll---~~l~~~~~~~~~lr~~~~~~~~~~l~ 253 (703)
++.+++.++...+..++..++.++.|+++...+......+.........+. +++.++..++.....|....++.++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r 154 (1490)
T TIGR01271 75 RRCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMR 154 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666667778888889999887765432111110000111111 12222233444445556666777777
Q ss_pred HHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005302 254 KRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSA 333 (703)
Q Consensus 254 ~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~~~l 333 (703)
..+...+|+|+++++...+++.++|++++++++|++.+++.+... ..++...+.+++++++++...++.+++.++++++
T Consensus 155 ~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~ 233 (1490)
T TIGR01271 155 IALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLIL 233 (1490)
T ss_pred HHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888899999999999999999999999999999999976543 3445556667777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 334 LAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNM 413 (703)
Q Consensus 334 ~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 413 (703)
++.+..++.++..+.+++..+..++..+...|.++||++||.+++|+.+.+++.+..++-.+...+..........+ ..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~-~~ 312 (1490)
T TIGR01271 234 LALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSA-FF 312 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 77777777788888888888888899999999999999999999999887777766655444333333222111111 11
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccccccc
Q 005302 414 LYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTW-WVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKK 492 (703)
Q Consensus 414 l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~-~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~~~~ 492 (703)
.....+.++.++++.+..| ++++.++++++|...+..++. .+...+..+.++..+++||.++++.++.+.. ...
T Consensus 313 -~~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~---~~~ 387 (1490)
T TIGR01271 313 -FSGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTL---EYN 387 (1490)
T ss_pred -HHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc---ccc
Confidence 1222345566677777654 689999999999988887764 6888888999999999999999987543221 100
Q ss_pred ccCCCCcEEEEEEEEEcCCC-------------------------------CCcccceeeeEEecCCcEEEEEcCCCCcH
Q 005302 493 LQRLMGRIDFVDVSFRYSSR-------------------------------EMVPVLQHVNISVNPGEVVAIAGLSGSGK 541 (703)
Q Consensus 493 ~~~~~g~I~~~nVsF~Y~~~-------------------------------~~~~vL~~isl~I~~Ge~vAIVG~SGsGK 541 (703)
.....|+++|++|.|+.. ...++|+|+||+|++||.++|+||+||||
T Consensus 388 --~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGK 465 (1490)
T TIGR01271 388 --LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGK 465 (1490)
T ss_pred --CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCH
Confidence 112359999999999631 01368999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHH
Q 005302 542 STLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDF 621 (703)
Q Consensus 542 STLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~ 621 (703)
|||+++|+|+++|++|+|.+|| .||||+|+|++|++||+|||.||. ..++++..++++.++++++
T Consensus 466 STLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~--~~~~~~~~~~~~~~~L~~~ 530 (1490)
T TIGR01271 466 SSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGL--SYDEYRYTSVIKACQLEED 530 (1490)
T ss_pred HHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhcc--ccchHHHHHHHHHHhHHHH
Confidence 9999999999999999999998 499999999999999999999984 4677888899999999999
Q ss_pred HHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHhC---CcEEEEecchh
Q 005302 622 IMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVA-TLSN---GLLVKSLHFLS 694 (703)
Q Consensus 622 I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~a-l~~~---~~~~~~~~~~~ 694 (703)
+..+|+|++|.+|+ .+|||||||||+||||+|++|+|++||||||+||++++++|.+. +.++ .-++-.-|-+.
T Consensus 531 l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~ 609 (1490)
T TIGR01271 531 IALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLE 609 (1490)
T ss_pred HHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChH
Confidence 99999999999998 49999999999999999999999999999999999999999875 4432 33444556654
No 45
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=4.2e-55 Score=548.84 Aligned_cols=484 Identities=16% Similarity=0.187 Sum_probs=375.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 005302 175 DLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLI---LLCVTSGICSGLRGCCFGIANMI 251 (703)
Q Consensus 175 ~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~---~l~~~~~~~~~lr~~~~~~~~~~ 251 (703)
.+++.+++.++..+++.++..++.++.|++++..+......+.. +.....+.. +..++.+++...+.+.....+.+
T Consensus 237 ~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~-~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 315 (1560)
T PTZ00243 237 TLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNAT-WGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQ 315 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777788888999999999999988776432111111 111111222 22223344445555666778888
Q ss_pred HHHHHHHHHHHHHHhCCchhhc--ccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005302 252 LVKRMRETLYSALLLQDISFFD--SETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLM 329 (703)
Q Consensus 252 l~~~lr~~lf~~Ll~lp~~~fe--~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~ 329 (703)
+...+...+|+|.++++...+. +.++|++++.+++|++.+++++. .+..++...+.+++++++|+.+-++.+++.++
T Consensus 316 ~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~-~~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~ 394 (1560)
T PTZ00243 316 YRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQ-YCMYLWSSPMVLLLSILLLSRLVGWCALMAVA 394 (1560)
T ss_pred HHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 8889999999999999998886 56899999999999999999884 45566777777778788887777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 330 ICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNL 409 (703)
Q Consensus 330 ~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~ 409 (703)
++++.+.+..+..++..+.++...+..++..+...|.++||++||.+++|+.+.+|+++..++-.+...+. .....
T Consensus 395 vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~----~~~~~ 470 (1560)
T PTZ00243 395 VLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDV----QLARV 470 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 66666666666667777777777777888899999999999999999999998888887655444433333 23333
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc--
Q 005302 410 CFNMLYHSTQ--VIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQ-- 485 (703)
Q Consensus 410 ~~~~l~~~~~--iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~-- 485 (703)
+..++..... +.++.++++.+..|.+|+|.+++.+++.+.+..|+..+...+..+.++..+++||.++++.++...
T Consensus 471 ~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~ 550 (1560)
T PTZ00243 471 ATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCST 550 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc
Confidence 3333332222 233367788889999999999999999999999999999999999999999999999997654100
Q ss_pred --c--cc--------c--c---------------cc---------------------------ccCCCCcEEEEEEEEEc
Q 005302 486 --F--MS--------K--G---------------KK---------------------------LQRLMGRIDFVDVSFRY 509 (703)
Q Consensus 486 --~--~~--------~--~---------------~~---------------------------~~~~~g~I~~~nVsF~Y 509 (703)
+ .. . . .+ .....+.+.++|++|++
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1560)
T PTZ00243 551 VQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGS 630 (1560)
T ss_pred cccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccc
Confidence 0 00 0 0 00 00011357888888875
Q ss_pred CCC-------------------------------------CCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 510 SSR-------------------------------------EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 510 ~~~-------------------------------------~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+.. .+.++|+|+||+|++||.++|+||||||||||+++|+|++
T Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~ 710 (1560)
T PTZ00243 631 PSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF 710 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 410 1245899999999999999999999999999999999999
Q ss_pred CCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccc
Q 005302 553 EPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETL 632 (703)
Q Consensus 553 ~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~ 632 (703)
+|++|+|.+ +++||||+|+|++|++||+|||.++. ..+++++.++++.++++++++.+|+|++|.
T Consensus 711 ~~~~G~i~~-------------~~~i~yv~Q~~~l~~~Tv~enI~~~~--~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~ 775 (1560)
T PTZ00243 711 EISEGRVWA-------------ERSIAYVPQQAWIMNATVRGNILFFD--EEDAARLADAVRVSQLEADLAQLGGGLETE 775 (1560)
T ss_pred CCCCcEEEE-------------CCeEEEEeCCCccCCCcHHHHHHcCC--hhhHHHHHHHHHHhhhHHHHHHhhccchHH
Confidence 999999986 35799999999999999999999985 346788999999999999999999999999
Q ss_pred cCC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q 005302 633 VDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVA 679 (703)
Q Consensus 633 vGe--~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~a 679 (703)
+|+ .+|||||||||+||||||++|+|++||||||+||+++++.+.+.
T Consensus 776 i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~ 824 (1560)
T PTZ00243 776 IGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEE 824 (1560)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHH
Confidence 998 49999999999999999999999999999999999998888664
No 46
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.2e-55 Score=525.69 Aligned_cols=484 Identities=22% Similarity=0.241 Sum_probs=361.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHH
Q 005302 177 VSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICS-GLRG--CCFGIANMILV 253 (703)
Q Consensus 177 ~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~-~lr~--~~~~~~~~~l~ 253 (703)
++-+++.+....++..+......+.|.++...+....... ...+....+.++++++..+-+ ..+. +...+.+.++-
T Consensus 196 ~~~f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~-~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R 274 (1381)
T KOG0054|consen 196 LRTFGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKR-LPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLR 274 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCC-cccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHH
Confidence 3445666666666666666667788888776654332211 111111111112222211111 1122 22345566666
Q ss_pred HHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005302 254 KRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSA 333 (703)
Q Consensus 254 ~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~~~l 333 (703)
..+-..+|+|.+++...--...++|+++|-++.|++++++... .+..+....+.+++++.+++..=.+-+++.++++.+
T Consensus 275 ~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~-~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il 353 (1381)
T KOG0054|consen 275 SALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAAC-FLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVL 353 (1381)
T ss_pred HHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 6677788999999988887788999999999999999998663 445566666776666666654333334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 334 LAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNM 413 (703)
Q Consensus 334 ~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 413 (703)
++.+..+..+..++.+++..+..++.-....|.++||++||.|++|+.+.++.++ .++.+++.-+..+....+..+
T Consensus 354 ~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~----~R~~El~~lrk~~~~~~~~~~ 429 (1381)
T KOG0054|consen 354 LIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIED----LRQKELKLLRKSAYLSALNSF 429 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777778888888887888889999999999999999999975555554 444455554444444444444
Q ss_pred HHHHHH--HHHHHHHHHH-HHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccccc
Q 005302 414 LYHSTQ--VIAVLIGGMF-IMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKG 490 (703)
Q Consensus 414 l~~~~~--iiil~~g~~l-v~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~~ 490 (703)
+..... +..+.++++. ...+.+|....++.+++...+..|+..+...+..+.++.++.+|+.+++..++.+......
T Consensus 430 ~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~ 509 (1381)
T KOG0054|consen 430 LNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER 509 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc
Confidence 333322 2333455555 4466788888888889999999999999999999999999999999999876543311111
Q ss_pred ccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC
Q 005302 491 KKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD 570 (703)
Q Consensus 491 ~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~ 570 (703)
....+....|+++|.+|++++...++.|+||||+||+|+.+||||+.|||||+|+..|+|..+..+|+|.++|.
T Consensus 510 ~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs------ 583 (1381)
T KOG0054|consen 510 SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS------ 583 (1381)
T ss_pred CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe------
Confidence 12222344699999999998743456999999999999999999999999999999999999999999999995
Q ss_pred hHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCC--CCChHHHHHHHH
Q 005302 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD--LLSGGQKQRIAI 648 (703)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~--~LSGGQkQRIaL 648 (703)
+|||+|+|++|+|||||||.||. +.|+++.+++.+.|++..|++.||.|..|.|||+ +|||||||||+|
T Consensus 584 -------iaYv~Q~pWI~ngTvreNILFG~--~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsL 654 (1381)
T KOG0054|consen 584 -------VAYVPQQPWIQNGTVRENILFGS--PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISL 654 (1381)
T ss_pred -------EEEeccccHhhCCcHHHhhhcCc--cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHH
Confidence 99999999999999999999994 6899999999999999999999999999999994 999999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATL 681 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~ 681 (703)
|||+|+|++|.+||+|.||+|+++.+.|.+..-
T Consensus 655 ARAVY~~adIYLLDDplSAVDahvg~~if~~ci 687 (1381)
T KOG0054|consen 655 ARAVYQDADIYLLDDPLSAVDAHVGKHIFEECI 687 (1381)
T ss_pred HHHHhccCCEEEEcCcchhhhHhhhHHHHHHHH
Confidence 999999999999999999999999999976643
No 47
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=8.8e-42 Score=382.97 Aligned_cols=449 Identities=19% Similarity=0.181 Sum_probs=325.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCHhH------HHHHHHHHHH
Q 005302 216 EIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGD------LTSRLGSDCQ 289 (703)
Q Consensus 216 d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gd------i~sR~~sdi~ 289 (703)
|...+.....++.+++++.......+.|+...+..+.-.-+...+.++.++....|+.. ..|. .=.|+..|+.
T Consensus 81 d~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~-~~~~~~~~dNpDQRi~eDi~ 159 (604)
T COG4178 81 DLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA-QAGGIGLIDNPDQRIQEDIR 159 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH-hcccccCCCChHHhHHHHHH
Confidence 33334333444444455555556666665555444444444445555555555333332 2322 2268888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 005302 290 QVSRVIGNDLNLILRNVLQGTGALIYLIVLSW-----------PLGLCTLMICSALAGL----MLIYGLYQKKAAKLVQE 354 (703)
Q Consensus 290 ~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~-----------~Lalv~l~~~~l~~~i----~~~~~~~~~~~~~~~~~ 354 (703)
..-+.-......++.++++.+...+++...|. .+...++.++.+|+++ ..++++...+...+..+
T Consensus 160 ~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~ 239 (604)
T COG4178 160 NFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQK 239 (604)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHH
Confidence 87776655556666666666666666653332 2223333333444433 23444444444333334
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 005302 355 ITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGN 434 (703)
Q Consensus 355 ~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~iiil~~g~~lv~~G~ 434 (703)
..+.....+.-.-++.+.|-.|+.|+.+.++.++......+...+...+...+..+......+..++-+.+++-....|+
T Consensus 240 ~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~ 319 (604)
T COG4178 240 LEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQ 319 (604)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCc
Confidence 45666777778888899999999999998888888877777555555555555555555555555677777888889999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------CCCCccccccccc---cCCCCcEEEEEE
Q 005302 435 ITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDL------MPSDQFMSKGKKL---QRLMGRIDFVDV 505 (703)
Q Consensus 435 itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~------~~e~~~~~~~~~~---~~~~g~I~~~nV 505 (703)
++.|.++.-.....++.+.+.++.+++..+....+.+.|+.++.+. +++.. ...+... ......|+++|+
T Consensus 320 i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~nl 398 (604)
T COG4178 320 ITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKP-ARTGRRIDFDDNADHGITLENL 398 (604)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCccccc-CcccccccccccccceeEEeee
Confidence 9999998888888899999999999999999999999999998742 22211 0101000 101457999999
Q ss_pred EEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCC
Q 005302 506 SFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEP 585 (703)
Q Consensus 506 sF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~ 585 (703)
+..=|++ ...++++||+|++||.+-|.||||||||||++.|+|+++--+|+|..- . -..+-++||.|
T Consensus 399 ~l~~p~~--~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P----~-------~~~~lflpQ~P 465 (604)
T COG4178 399 SLRTPDG--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP----A-------DSALLFLPQRP 465 (604)
T ss_pred eEECCCC--CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC----C-------CCceEEecCCC
Confidence 9999875 489999999999999999999999999999999999999999998652 1 13489999999
Q ss_pred ccccccHHHHhccCCCC-CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCC
Q 005302 586 KLFRMDISSNISYGCTQ-DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEA 664 (703)
Q Consensus 586 ~LF~gTI~eNI~~g~~~-~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEa 664 (703)
++=.||+||=|+|-++. +.+|+++.+++.++++.+++.+|.+--+ =+.-|||||||||+.||.|+++|++++||||
T Consensus 466 Y~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~---W~~vLS~GEqQRlafARilL~kP~~v~LDEA 542 (604)
T COG4178 466 YLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR---WDRVLSGGEQQRLAFARLLLHKPKWVFLDEA 542 (604)
T ss_pred CCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc---HhhhcChhHHHHHHHHHHHHcCCCEEEEecc
Confidence 99999999999998764 3899999999999999999999642111 1258999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 005302 665 TSALDAESEHNIKVATLS 682 (703)
Q Consensus 665 TSaLD~~tE~~I~~al~~ 682 (703)
|||||+++|.++.+.+++
T Consensus 543 TsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 543 TSALDEETEDRLYQLLKE 560 (604)
T ss_pred hhccChHHHHHHHHHHHh
Confidence 999999999999999987
No 48
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=7e-44 Score=375.03 Aligned_cols=183 Identities=29% Similarity=0.439 Sum_probs=171.9
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
|.|+++||+|+|++. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|++||.|+..++...+|+.
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 469999999999754 3679999999999999999999999999999999999998 78999999999999999999999
Q ss_pred eEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCC
Q 005302 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD 655 (703)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~ 655 (703)
|+||+|++.+|++|++||+..+. ..++++++++++.+++++++.++|.||+|.++| .+||||||||++|||||+++
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~--~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG--KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc--CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999997653 357889999999999999999999999999998 59999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 656 PTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
|+||+|||||++||+++++.+++.|++..
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~ 185 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAF 185 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998753
No 49
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-43 Score=346.19 Aligned_cols=180 Identities=35% Similarity=0.483 Sum_probs=159.2
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc-----ceEEECCEeCCC--CC
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN-----GQILIDGFPIKE--VD 570 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~s-----G~I~idG~di~~--i~ 570 (703)
..++++|+++.|++ ..+|+|||++|++++.+|++|||||||||+++.+-|+.+..+ |+|.+||+||.+ ++
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 35899999999984 569999999999999999999999999999999999999987 999999999976 57
Q ss_pred hHHhhcceEEEccCCccccccHHHHhccCCCC-----CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHH
Q 005302 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCTQ-----DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (703)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-----~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (703)
...+|++||+|+|.|.-|..||.|||+||..- ..-+|.++++++.|+++|.+.+- ++. ....|||||+||
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDr---L~~--sa~~LSGGQQQR 157 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDR---LHK--SALGLSGGQQQR 157 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHH---hhC--CccCCChhHHHH
Confidence 99999999999999999999999999999310 12245688999999999998642 211 113699999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
+||||||.-+|+||+||||||||||.+..+|.+.|.++.+
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~ 197 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK 197 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887764
No 50
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-43 Score=346.70 Aligned_cols=175 Identities=35% Similarity=0.479 Sum_probs=153.8
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC-CCChHHhhcc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK-EVDIKWLRGR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~-~i~~~~lR~~ 577 (703)
-|+++||+.+|++ ..||+|||++|++||.++|+||||||||||+++|.||-+|++|+|.+||.++. ..+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 3899999999984 46999999999999999999999999999999999999999999999998773 3478999999
Q ss_pred eEEEccCCcccc-ccHHHHhccCCC--CCCCH----HHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005302 578 IGFVGQEPKLFR-MDISSNISYGCT--QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (703)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~~~----e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (703)
+|+|+|+..||. -|+.|||+++.- ...+. ++-.+.++++|+.|-..+.| .+||||||||+||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP---------~qLSGGQqQRVAIAR 149 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP---------AQLSGGQQQRVAIAR 149 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc---------cccCcHHHHHHHHHH
Confidence 999999999998 899999998731 12233 33455677888888877776 459999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
||.-+|+++++||||||||||.-..|.+.++++..
T Consensus 150 ALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 150 ALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887643
No 51
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-39 Score=339.48 Aligned_cols=485 Identities=19% Similarity=0.179 Sum_probs=337.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 174 WDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTAS-IFTAQSSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMIL 252 (703)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~-i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l 252 (703)
.-++|++++.++....+++++++..+..-.++... +......- .......+++++..+.+.+.+.....+++++
T Consensus 5 l~llr~nr~~~i~~~a~s~a~g~~g~~lLa~in~al~e~~~~~~-----~~l~~f~~llllf~~ss~is~lg~t~~gq~~ 79 (546)
T COG4615 5 LLLLRQNRWPFISVMALSLASGALGIGLLAFINQALIETADTSL-----LVLPEFLGLLLLFMVSSLISQLGLTTLGQHF 79 (546)
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccce-----eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467888888888888877777665433333222 21111111 1123344555556667777788888999999
Q ss_pred HHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005302 253 VKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICS 332 (703)
Q Consensus 253 ~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~~~ 332 (703)
...+|.++.++++.-|+.-+|+..++.++.++++|+..|. +-...++.+...++..+++.+++.+.|+++.+++++.++
T Consensus 80 I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~iv 158 (546)
T COG4615 80 IYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIV 158 (546)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 444556778888888999999999999999888887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 333 ALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQE--VKRYKHWLGKLADINLRQSAAYGFWNLC 410 (703)
Q Consensus 333 l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~--~~r~~~~~~~~~~~~~r~~~~~~~~~~~ 410 (703)
+.++.-.+...+..+-.+...+...+.+...+..+.|.+++++.....++ .+++....+.+.+ +.. ....+...
T Consensus 159 v~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~---~~~-~~n~f~~l 234 (546)
T COG4615 159 VTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH---HII-RANTFHLL 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh---hhh-hhhHHHHH
Confidence 66555333333333333344444677888999999999999987654421 1122222222222 111 11111101
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccc
Q 005302 411 FNMLYHSTQVIAVLIGGMFIM-RGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSK 489 (703)
Q Consensus 411 ~~~l~~~~~iiil~~g~~lv~-~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~ 489 (703)
.....++....++.+.-|+.. -+.-+.-....+.+....+-+|+.+.+..+..+.++..+.+++.++-..|+.......
T Consensus 235 a~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~~ 314 (546)
T COG4615 235 AVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRP 314 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCCC
Confidence 111111111122222222222 2322333333344444456688888888888999999999999998775443221111
Q ss_pred cccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC
Q 005302 490 GKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV 569 (703)
Q Consensus 490 ~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i 569 (703)
.+.|. -..||++||.|+|++. ..=+.-||++|++||.|-|+|.+||||||+++||.|+|.|++|+|++||.|++.-
T Consensus 315 -q~~p~-~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e 390 (546)
T COG4615 315 -QAFPD-WKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAE 390 (546)
T ss_pred -CcCCc-ccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCC
Confidence 11122 3579999999999864 3567889999999999999999999999999999999999999999999999999
Q ss_pred ChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC-----CCCChHHHH
Q 005302 570 DIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD-----DLLSGGQKQ 644 (703)
Q Consensus 570 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe-----~~LSGGQkQ 644 (703)
++++||+-++.|+-|-+||+.++ +.+..++.+.+..-++.-.+ .-.|-+.+ .+||-|||.
T Consensus 391 ~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel---------~~ktsl~d~~fs~~kLStGQkK 455 (546)
T COG4615 391 QLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLEL---------AHKTSLNDGRFSNLKLSTGQKK 455 (546)
T ss_pred CHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHH---------hhhhcccCCcccccccccchHH
Confidence 99999999999999999999865 32323677766655544433 33444433 379999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHH----HHhCCcEE
Q 005302 645 RIAIARAILRDPTILILDEATSALDAESEHNIKVA----TLSNGLLV 687 (703)
Q Consensus 645 RIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~a----l~~~~~~~ 687 (703)
|+|+-=||+-+.||++|||=-+-=||.=.+...+. +++.++-+
T Consensus 456 RlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI 502 (546)
T COG4615 456 RLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTI 502 (546)
T ss_pred HHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeE
Confidence 99999999999999999999999999888877655 34555544
No 52
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.6e-42 Score=347.86 Aligned_cols=184 Identities=40% Similarity=0.637 Sum_probs=172.4
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
|.|+++|++++|++. +.++++|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 468999999999853 2579999999999999999999999999999999999999999999999999998888899999
Q ss_pred eEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCC
Q 005302 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD 655 (703)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~ 655 (703)
++|++|++.+|++|++|||.+++ ..+.+++.++++..++.+++.++|.|++|.++. .+||||||||++|||||+++
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG--EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999874 456788999999999999999999999999876 59999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 656 PTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
|++|||||||++||+.+.+.+.+.|+++.
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~ 186 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKTIREAF 186 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998753
No 53
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.1e-41 Score=350.92 Aligned_cols=194 Identities=47% Similarity=0.702 Sum_probs=174.7
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++||+++|+++ ..++++|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999753 257999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCC
Q 005302 580 FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPT 657 (703)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ 657 (703)
||+|++.+|+.|+.|||.++.. ..+.+++.++++..++++++..+|.|+++..+. .+||||||||++|||||+++|+
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADP-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EEcCCchhccchHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999754 456677888888899999999999999998876 5999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhCCc---EEEEecchhH
Q 005302 658 ILILDEATSALDAESEHNIKVATLSNGL---LVKSLHFLSL 695 (703)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~al~~~~~---~~~~~~~~~~ 695 (703)
+|||||||++||+.+.+.+.+.|+++.. ++=+-|-+..
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~ 199 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLST 199 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence 9999999999999999999999987642 3444565554
No 54
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-42 Score=354.55 Aligned_cols=177 Identities=34% Similarity=0.501 Sum_probs=155.5
Q ss_pred EEEEEEEEEcCCC--CCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC---hHHh
Q 005302 500 IDFVDVSFRYSSR--EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD---IKWL 574 (703)
Q Consensus 500 I~~~nVsF~Y~~~--~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~---~~~l 574 (703)
|+++|||+.|+.+ ....+++|+||+|++||..+|||.||+|||||++++.||-.|++|+|.+||+|+..++ +...
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999862 1256999999999999999999999999999999999999999999999998887776 5566
Q ss_pred hcceEEEccCCcccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005302 575 RGRIGFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (703)
Q Consensus 575 R~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (703)
|++||+|+|+..|++ .|+.|||+|--. ...+ ++++.+.++.+|+.|.-.+-| .+||||||||++|
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP---------~qLSGGQKQRVaI 152 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP---------AQLSGGQKQRVAI 152 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc---------hhcCcchhhHHHH
Confidence 889999999999999 999999998532 1222 345667888888888776655 5799999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
||||..+|+||+.|||||||||+|.+.|.+-|++++.
T Consensus 153 ARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~ 189 (339)
T COG1135 153 ARALANNPKILLCDEATSALDPETTQSILELLKDINR 189 (339)
T ss_pred HHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987664
No 55
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-41 Score=346.01 Aligned_cols=195 Identities=49% Similarity=0.747 Sum_probs=176.3
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
+.|+++|++++|++. .++++|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 368999999999742 469999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCC
Q 005302 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD 655 (703)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~ 655 (703)
++|++|++.+|++|+.||+.++.+ ....+++.++++..++.+++..+|.|+++.++. ..||||||||++|||||+++
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRP-NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999854 456678888999999999999999999999876 58999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 656 PTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
|++|||||||++||+.+.+.+.+.|++.. -++=.-|-...
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 200 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLST 200 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 99999999999999999999999998864 23444465544
No 56
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-41 Score=364.67 Aligned_cols=181 Identities=34% Similarity=0.500 Sum_probs=155.1
Q ss_pred CCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCC--C
Q 005302 496 LMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIK--E 568 (703)
Q Consensus 496 ~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-----p~sG~I~idG~di~--~ 568 (703)
..+.|+++||+|+|++. .+++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+|+. .
T Consensus 77 ~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 77 HANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred cCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34679999999999753 3679999999999999999999999999999999999997 57999999999997 4
Q ss_pred CChHHhhcceEEEccCCccccccHHHHhccCCC-CCCCHHH-----HHHHHHHhchHHHHHcCCCCcccccCC--CCCCh
Q 005302 569 VDIKWLRGRIGFVGQEPKLFRMDISSNISYGCT-QDIKQQD-----IEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSG 640 (703)
Q Consensus 569 i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~~~e~-----i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSG 640 (703)
.+...+|+.++||+|++++|++||+|||.|+.. ...++++ +.++++.++++ .+.++.+++ .+|||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-------~~l~~~~~~~~~~LSg 228 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALW-------DEVKDDLDKAGNALSG 228 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCc-------chhhhhhhCCcccCCH
Confidence 556788999999999999999999999998631 1233333 34556666653 345677777 59999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 641 GQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 641 GQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
|||||++|||||+++|+||+||||||+||+++.+.+++.|+++.
T Consensus 229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~ 272 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELK 272 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998764
No 57
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=5.6e-41 Score=341.65 Aligned_cols=196 Identities=43% Similarity=0.639 Sum_probs=176.3
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
++|+++|++++|++. ..++++|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999753 2569999999999999999999999999999999999999999999999999988887788899
Q ss_pred eEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCC
Q 005302 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD 655 (703)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~ 655 (703)
++||+|++.+|..|++||+.++.. ..+.+++.++++..++.+.+...|.|++|.+.+ ..||||||||++||||++.+
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAP-LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCC-CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998754 445678889999999999999999999999876 59999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhCCc---EEEEecchhH
Q 005302 656 PTILILDEATSALDAESEHNIKVATLSNGL---LVKSLHFLSL 695 (703)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~al~~~~~---~~~~~~~~~~ 695 (703)
|++|||||||++||+++...+.+.|++... ++=.-|-+..
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~ 201 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSL 201 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence 999999999999999999999999988743 3444566653
No 58
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=6.7e-41 Score=342.61 Aligned_cols=199 Identities=48% Similarity=0.741 Sum_probs=175.3
Q ss_pred CCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhh
Q 005302 496 LMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLR 575 (703)
Q Consensus 496 ~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR 575 (703)
..+.|+++|++++|+++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35679999999999854224699999999999999999999999999999999999999999999999999888888888
Q ss_pred cceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhc
Q 005302 576 GRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 576 ~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~ 653 (703)
+.++||+|++.+|++|++||+.++.. ..+.+++.+.++..++++++..+|.|+++.+.. ..||||||||++|||||+
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQ-SCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998744 445556666777788899999999999998876 589999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc---EEEEecchhH
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNGL---LVKSLHFLSL 695 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~---~~~~~~~~~~ 695 (703)
++|++|||||||++||+++.+.+.+.|+++.. .+=.-|-...
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 211 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLST 211 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 99999999999999999999999999987643 3444566554
No 59
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-41 Score=344.25 Aligned_cols=193 Identities=48% Similarity=0.721 Sum_probs=175.2
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++|++++|++. ..+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999742 46999999999999999999999999999999999999999999999999999988889999999
Q ss_pred EEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCC
Q 005302 580 FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPT 657 (703)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ 657 (703)
|++|++.+|++|++||+.++.. +.+++++.++++..++.+.+..+|.|++|.++. ..||||||||++|||||+++|+
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred EECCCChhhcchHHHHHhhcCC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999855 556777888899999999999999999999876 5999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhCCc---EEEEecchhH
Q 005302 658 ILILDEATSALDAESEHNIKVATLSNGL---LVKSLHFLSL 695 (703)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~al~~~~~---~~~~~~~~~~ 695 (703)
+|||||||++||+++.+.+.+.|+++.. ++-.-|-...
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~ 198 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLST 198 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH
Confidence 9999999999999999999999987643 4444565544
No 60
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.9e-41 Score=342.97 Aligned_cols=194 Identities=48% Similarity=0.746 Sum_probs=174.2
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++|++++|++. ..++++|+||++++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999753 247999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCC
Q 005302 580 FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPT 657 (703)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ 657 (703)
|++|++.+|++|++||+.++.. +.+.+++.++++..++++++..+|.|+++..+. ..||||||||++|||||+++|+
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRP-GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred EeCCCCeeccccHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999854 556678888889999999999999999998876 5999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhCCc---EEEEecchhH
Q 005302 658 ILILDEATSALDAESEHNIKVATLSNGL---LVKSLHFLSL 695 (703)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~al~~~~~---~~~~~~~~~~ 695 (703)
+|||||||++||+.+...+.+.|+++.. .+=+-|-+..
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 199 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLST 199 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 9999999999999999999999987632 3334455543
No 61
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.8e-40 Score=346.37 Aligned_cols=198 Identities=33% Similarity=0.548 Sum_probs=176.9
Q ss_pred CCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHh
Q 005302 495 RLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL 574 (703)
Q Consensus 495 ~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~l 574 (703)
...+.|+++|++++|++. +.++++|+||+|+|||.+||+|+||||||||+++|+|+++|++|+|++||.++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 356789999999999753 2579999999999999999999999999999999999999999999999999999988899
Q ss_pred hcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHh
Q 005302 575 RGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAI 652 (703)
Q Consensus 575 R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL 652 (703)
|+.|+||+|++.+|++|++||+.... ....+++.++.+.+++++++..+|.|++|.+++ .+||||||||++|||||
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral 171 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPEC--KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAF 171 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCC--CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999998652 335677888999999999999999999999987 59999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
+++|++|||||||++||+++++.+.+.+++.. -.+-.-|-+..
T Consensus 172 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~ 217 (257)
T cd03288 172 VRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVST 217 (257)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHH
Confidence 99999999999999999999999999988642 23334455443
No 62
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.7e-41 Score=344.39 Aligned_cols=190 Identities=31% Similarity=0.448 Sum_probs=170.0
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.++++|++|+|++ +++++|+||+|++||.++|+||+|||||||+|+|+|+.+|.+|+|++||+|+.+++.+++-+.+
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4789999999983 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCC-ccccccHHHHhccCCCC---------CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005302 579 GFVGQEP-KLFRMDISSNISYGCTQ---------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (703)
Q Consensus 579 ~~V~Qd~-~LF~gTI~eNI~~g~~~---------~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (703)
|||||++ .-|.-|+.|=+.+|..+ +.|++.+.+|++..++.++..+. + ..||||||||+.|
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~---~------~~LSGGerQrv~i 149 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP---V------DELSGGERQRVLI 149 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc---c------cccChhHHHHHHH
Confidence 9999995 56889999999988643 23555788999999998886541 2 4699999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-----EEEEecchhHHHHhh
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSNGL-----LVKSLHFLSLYVLIC 700 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-----~~~~~~~~~~~~~~~ 700 (703)
||||.++|+||+||||||+||..+.-+|++.+++++. .|-.+|-+.+-.-.|
T Consensus 150 ArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~rya 206 (258)
T COG1120 150 ARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYA 206 (258)
T ss_pred HHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 9999999999999999999999999999999988772 588999987755544
No 63
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.2e-41 Score=337.49 Aligned_cols=168 Identities=36% Similarity=0.531 Sum_probs=150.4
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.+++++|+.+|++ ..||+|+||+|++||.|+|+||||||||||++++.||.+|++|+|.++|.++... ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4899999999985 5799999999999999999999999999999999999999999999999999654 4569
Q ss_pred EEEccCCcccc-ccHHHHhccCCCC-----CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 579 GFVGQEPKLFR-MDISSNISYGCTQ-----DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~~-----~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
|||+|++.||. -|+.||+.++-+. ....+++.++++++|+.+|-.+.| ..||||||||+||||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P---------~qLSGGMrQRVaiARAL 145 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP---------HQLSGGMRQRVAIARAL 145 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc---------cccChHHHHHHHHHHHH
Confidence 99999999999 7999999998541 112456888899999988877766 45999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
..+|+||+||||.||||+.|....++-+.++
T Consensus 146 ~~~P~lLLlDEPFgALDalTR~~lq~~l~~l 176 (248)
T COG1116 146 ATRPKLLLLDEPFGALDALTREELQDELLRL 176 (248)
T ss_pred hcCCCEEEEcCCcchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888654
No 64
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.5e-40 Score=341.01 Aligned_cols=195 Identities=55% Similarity=0.872 Sum_probs=173.6
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++|++++|++..+.++++|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997532357999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCC
Q 005302 580 FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPT 657 (703)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ 657 (703)
|++|++.+|+.|++||+.++.. ....+++.+.++..++.+++..+|.|+++.++. .+||||||||++|||||+.+|+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKP-DATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EECCchhhhhhhHHHHhhccCC-CCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999754 445677788888889999999999999998876 5999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 658 ILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
+|||||||++||+.+.+.+.+.|++.. .++=+-|-+..
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~ 200 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLST 200 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence 999999999999999999999998653 23444465554
No 65
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.8e-40 Score=335.76 Aligned_cols=186 Identities=32% Similarity=0.489 Sum_probs=157.1
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChH---Hhhc
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK---WLRG 576 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~---~lR~ 576 (703)
|+++||+++|++. ..++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999753 24699999999999999999999999999999999999999999999999999876543 4788
Q ss_pred ceEEEccCCcccc-ccHHHHhccCC-----CCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005302 577 RIGFVGQEPKLFR-MDISSNISYGC-----TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (703)
Q Consensus 577 ~I~~V~Qd~~LF~-gTI~eNI~~g~-----~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (703)
.++||+|++.+|. .|++||+.++. +.+..++++.++++..++.++..+.| .+||||||||++|||
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~lar 151 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP---------MQLSGGEQQRVAIAR 151 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHHHH
Confidence 9999999999987 59999998752 10123456777888888776655544 379999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
||+++|++|||||||++||+++.+.+.+.|++.. -++=.-|-+..
T Consensus 152 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~ 200 (216)
T TIGR00960 152 AIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINL 200 (216)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 9999999999999999999999999999998752 34556676654
No 66
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-41 Score=334.79 Aligned_cols=174 Identities=34% Similarity=0.531 Sum_probs=153.9
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+|+|||++|.+ ..+++|+||+|++||.++++|||||||||++|++.|+.+|++|+|+|||+|+++++.-.+|++||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 799999999984 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcccc-ccHHHHhccCCC--CCCCHHH----HHHHHHHhchH--HHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005302 580 FVGQEPKLFR-MDISSNISYGCT--QDIKQQD----IEWAAKQAYAH--DFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (703)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~--~~~~~e~----i~~aa~~A~l~--d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (703)
||-|..-||. .||.|||++- | ...+.++ +.+.+++.+++ +|..+.| ..|||||+||+.+||
T Consensus 79 YviQqigLFPh~Tv~eNIa~V-P~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP---------~eLSGGQQQRVGv~R 148 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATV-PKLLGWDKERIKKRADELLDLVGLDPSEYADRYP---------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhhcccCCCccHHHHHHhh-hhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc---------hhcCcchhhHHHHHH
Confidence 9999999997 8999999976 3 1234444 45566666664 3544444 469999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcE
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVATLSNGLL 686 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~ 686 (703)
||..+|+||++|||.||||+.+.+++++-+.++++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~ 184 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE 184 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998876653
No 67
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1e-40 Score=321.18 Aligned_cols=176 Identities=33% Similarity=0.473 Sum_probs=159.5
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC---hHHhhc
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD---IKWLRG 576 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~---~~~lR~ 576 (703)
|+|+||+.+|++. +++|+||||+|++||.+-++||||||||||+|||+|...|++|+|.++|.|+..+. ...+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7999999999974 67999999999999999999999999999999999999999999999999998776 456899
Q ss_pred ceEEEccCCcccc-ccHHHHhccCC-----CCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005302 577 RIGFVGQEPKLFR-MDISSNISYGC-----TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (703)
Q Consensus 577 ~I~~V~Qd~~LF~-gTI~eNI~~g~-----~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (703)
+||+|+||-.|.. -|+.||++|.- +++.-.+++.++++.+|+.+-...+|. .|||||+||++|||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~---------~LSGGEQQRvaIAR 150 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS---------QLSGGEQQRVAIAR 150 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc---------ccCchHHHHHHHHH
Confidence 9999999999754 79999999742 223335778899999999999999984 59999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcE
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVATLSNGLL 686 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~ 686 (703)
|+..+|++|+=||||.+||+++...|++.+++++.+
T Consensus 151 AiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~ 186 (223)
T COG2884 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRL 186 (223)
T ss_pred HHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999887754
No 68
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.7e-40 Score=332.20 Aligned_cols=177 Identities=36% Similarity=0.507 Sum_probs=149.1
Q ss_pred EEEEEEEEEcCCCC-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCh---HHh-
Q 005302 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI---KWL- 574 (703)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~---~~l- 574 (703)
++++||+..|.... ...+|+++||+|++||.|||+||||||||||+++|.|+..|++|+|.++|+|+..++. ..+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57999999997532 2469999999999999999999999999999999999999999999999999999884 334
Q ss_pred hcceEEEccCCcccc-ccHHHHhcc----CCCCC-CCHHHHHHHHHHhchHHHHH-cCCCCcccccCCCCCChHHHHHHH
Q 005302 575 RGRIGFVGQEPKLFR-MDISSNISY----GCTQD-IKQQDIEWAAKQAYAHDFIM-SLPSGYETLVDDDLLSGGQKQRIA 647 (703)
Q Consensus 575 R~~I~~V~Qd~~LF~-gTI~eNI~~----g~~~~-~~~e~i~~aa~~A~l~d~I~-~LP~GydT~vGe~~LSGGQkQRIa 647 (703)
|++||+|+|+..|++ -|++|||.+ ...+. ...+++.+.++..++.+... +.| ..||||||||+|
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p---------~eLSGGqqQRVA 152 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP---------SELSGGQQQRVA 152 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc---------hhcCHHHHHHHH
Confidence 467999999999876 799999994 32111 12455666667667765544 333 469999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 648 IARAILRDPTILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 648 LARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
|||||+.+|+|++.||||+|||.+|.+.|.+.+++++.
T Consensus 153 IARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~ 190 (226)
T COG1136 153 IARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK 190 (226)
T ss_pred HHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988753
No 69
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-40 Score=351.39 Aligned_cols=174 Identities=33% Similarity=0.470 Sum_probs=158.5
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+.+|++. . +++|+||+|+.||.++|+|||||||||++++|+||.+|++|+|+|||.|+++++++. +.|
T Consensus 3 ~i~l~~v~K~yg~~--~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF--E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc--e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999853 2 999999999999999999999999999999999999999999999999999988874 899
Q ss_pred EEEccCCccccc-cHHHHhccCCCC-----CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 579 GFVGQEPKLFRM-DISSNISYGCTQ-----DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~~-----~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
|+|+|+.-||.- |++|||+|+-.- +..++++.++++..++.+.+++.| ..||||||||+||||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P---------~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP---------LQLSGGQRQRVALARAL 148 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc---------ccCChhhHHHHHHHHHH
Confidence 999999999985 999999998531 233678899999999999999887 45999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcE
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSNGLL 686 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~ 686 (703)
.|+|++++||||.|+||++........|++++..
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~ 182 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER 182 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998888876543
No 70
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=9.4e-40 Score=329.13 Aligned_cols=180 Identities=36% Similarity=0.469 Sum_probs=158.1
Q ss_pred EEEEEEEEEcCCCCC--cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 500 IDFVDVSFRYSSREM--VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~--~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
|+++||+++|++..+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 578999999975311 3699999999999999999999999999999999999999999999999 6
Q ss_pred eEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCC
Q 005302 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD 655 (703)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~ 655 (703)
|+||+|++.+|++|++||+.++. ..++++..++++.+++.+++..+|+|++|.++. ..||||||||++|||||+++
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~ 145 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGK--PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSD 145 (204)
T ss_pred EEEEecCchhccCcHHHHhccCC--CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999973 345677888899999999999999999999887 58999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-HHhC----CcEEEEecchh
Q 005302 656 PTILILDEATSALDAESEHNIKVA-TLSN----GLLVKSLHFLS 694 (703)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~a-l~~~----~~~~~~~~~~~ 694 (703)
|++++|||||++||+++.+.+.+. +++. .-++-.-|-..
T Consensus 146 p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~ 189 (204)
T cd03250 146 ADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ 189 (204)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH
Confidence 999999999999999998888764 4433 22344456544
No 71
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.2e-39 Score=352.27 Aligned_cols=187 Identities=28% Similarity=0.409 Sum_probs=158.9
Q ss_pred EEEEEEEEEcCCCC-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHH---hh
Q 005302 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW---LR 575 (703)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~---lR 575 (703)
|+++||+++|++++ ..++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997421 247999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cceEEEccCCcccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005302 576 GRIGFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (703)
Q Consensus 576 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (703)
+.||||+|++.+|. .|++|||+++.. ...+ ++++.++++..++.+...+.| ..||||||||++||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~---------~~LSgGqkQRV~IA 152 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP---------SNLSGGQKQRVAIA 152 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHH
Confidence 89999999999995 899999997531 0122 345677888888877655443 47999999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-----EEEEecchhH
Q 005302 650 RAILRDPTILILDEATSALDAESEHNIKVATLSNGL-----LVKSLHFLSL 695 (703)
Q Consensus 650 RAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-----~~~~~~~~~~ 695 (703)
|||+.+|++|+||||||+||+++.+.+.+.|++++. .+-.-|-+..
T Consensus 153 RAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~ 203 (343)
T TIGR02314 153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDV 203 (343)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999999999999999999999999999988642 4556676654
No 72
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.9e-39 Score=332.07 Aligned_cols=186 Identities=36% Similarity=0.525 Sum_probs=158.5
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC-----CCCcceEEECCEeCCCCC--hH
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY-----EPTNGQILIDGFPIKEVD--IK 572 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly-----~p~sG~I~idG~di~~i~--~~ 572 (703)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|++ +|++|+|.+||.++.+.+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999974 36999999999999999999999999999999999999 999999999999998776 66
Q ss_pred HhhcceEEEccCCccccccHHHHhccCCCC-CC-----CHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005302 573 WLRGRIGFVGQEPKLFRMDISSNISYGCTQ-DI-----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI 646 (703)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~~-----~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRI 646 (703)
.+|+.++||+|++.+|+.|++||+.++... .. .++++.++++..++.+.+.+.++ ...||||||||+
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-------~~~LSgG~~qrv 150 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH-------ALGLSGGQQQRL 150 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC-------cccCCHHHHHHH
Confidence 788999999999999999999999875310 11 23567778888888766554332 357999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc---EEEEecchhH
Q 005302 647 AIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL---LVKSLHFLSL 695 (703)
Q Consensus 647 aLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~---~~~~~~~~~~ 695 (703)
+|||||+++|++|||||||++||+++.+.+.+.|++... ++=.-|-+..
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~ 202 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQ 202 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHH
Confidence 999999999999999999999999999999999987754 4445566553
No 73
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.9e-39 Score=328.87 Aligned_cols=191 Identities=27% Similarity=0.390 Sum_probs=165.3
Q ss_pred EEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCh----HHhhc
Q 005302 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI----KWLRG 576 (703)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~----~~lR~ 576 (703)
.+.|++|+|+++ .++++|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999854 579999999999999999999999999999999999999999999999999876542 34677
Q ss_pred ceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcC
Q 005302 577 RIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILR 654 (703)
Q Consensus 577 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r 654 (703)
.++|++|++.+|+.|++|||.++. ..++++..++++..++.+++..+|+|++|.++. ..||||||||++|||||++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGS--PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcC--cCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 899999999999999999999874 345677788899999999999999999998876 5899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHH--HHH---hC-CcEEEEecchhH
Q 005302 655 DPTILILDEATSALDAESEHNIKV--ATL---SN-GLLVKSLHFLSL 695 (703)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~--al~---~~-~~~~~~~~~~~~ 695 (703)
+|++|||||||++||+.+...+.+ .++ +. .-++=.-|-...
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~ 204 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY 204 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH
Confidence 999999999999999999887776 333 22 234555566554
No 74
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-39 Score=331.34 Aligned_cols=184 Identities=32% Similarity=0.430 Sum_probs=153.0
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCh---HHhhc
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI---KWLRG 576 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~---~~lR~ 576 (703)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999973 469999999999999999999999999999999999999999999999999987764 57889
Q ss_pred ceEEEccCCccccc-cHHHHhccCCC--CCCCH----HHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005302 577 RIGFVGQEPKLFRM-DISSNISYGCT--QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (703)
Q Consensus 577 ~I~~V~Qd~~LF~g-TI~eNI~~g~~--~~~~~----e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (703)
.|+||+|++.+|.+ |++||+.++.. ...+. +++.++++..++.++..+.| ..||||||||++||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~ia 148 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP---------AELSGGMKKRVALA 148 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHH
Confidence 99999999999986 99999987521 01232 33455566655544433222 47999999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhH
Q 005302 650 RAILRDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSL 695 (703)
Q Consensus 650 RAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~ 695 (703)
|||+++|++|||||||++||+++.+.+.+.|+++ .-++-.-|-+..
T Consensus 149 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~ 199 (235)
T cd03261 149 RALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDT 199 (235)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH
Confidence 9999999999999999999999999999999864 235566676654
No 75
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.9e-39 Score=326.00 Aligned_cols=187 Identities=33% Similarity=0.538 Sum_probs=155.4
Q ss_pred EEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEE
Q 005302 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF 580 (703)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~ 580 (703)
+++||+++|++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999753 2469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCC--ccccccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 581 VGQEP--KLFRMDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 581 V~Qd~--~LF~gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
++|++ .+++.|++||+.++.. ...+ ++++.++++..++.+++.+.| ..||||||||++|||||+
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~laral~ 150 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP---------FTLSGGQKQRVAIAGVLA 150 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHHHHHHHHHHHHh
Confidence 99998 4678999999987521 0112 234556666666665544332 579999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHHH
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLYV 697 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~~ 697 (703)
++|++||||||||+||+++.+.+.+.|++.. -++=+-|-+...-
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~ 198 (211)
T cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLL 198 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 9999999999999999999999999987653 3455667665433
No 76
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-39 Score=330.00 Aligned_cols=172 Identities=31% Similarity=0.525 Sum_probs=152.1
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++|++|+|.++ +||+||||+|++||.+||+||+|||||||+|+++|+.+|++|+|.++|.+.++... +..|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 59999999999742 59999999999999999999999999999999999999999999999999876443 5789
Q ss_pred EEEccC---CccccccHHHHhccCCCCC---------CCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005302 579 GFVGQE---PKLFRMDISSNISYGCTQD---------IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI 646 (703)
Q Consensus 579 ~~V~Qd---~~LF~gTI~eNI~~g~~~~---------~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRI 646 (703)
|||||. ++=|.-||+|=+.+|.... .|.+++.+|++.+++.++..+ .| ..|||||+||+
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i--~~LSGGQ~QRV 148 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QI--GELSGGQKQRV 148 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------cc--cccCcHHHHHH
Confidence 999994 4569999999999885322 245899999999999887543 22 36999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 647 AIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 647 aLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
.|||||..+|++|+|||||+++|+.++..|.+-|++++.
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~ 187 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ 187 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887665
No 77
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=4.1e-39 Score=327.50 Aligned_cols=188 Identities=35% Similarity=0.448 Sum_probs=152.4
Q ss_pred EEEEEEEEEcCCCC-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHH----h
Q 005302 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW----L 574 (703)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~----l 574 (703)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999997421 146999999999999999999999999999999999999999999999999998776432 4
Q ss_pred hcceEEEccCCccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005302 575 RGRIGFVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (703)
Q Consensus 575 R~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (703)
|+.++||+|++.+|.+ |++||+.++.. ...+ ++++.++++..++.+...+.| .+||||||||++|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~l 151 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYP---------SELSGGQQQRVAI 151 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcCh---------hhcCHHHHHHHHH
Confidence 6789999999999986 99999998532 1111 234555555555544333222 4799999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHH
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLY 696 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~ 696 (703)
||||+++|++|||||||++||+++.+.+.+.|+++. -++=+-|-+...
T Consensus 152 a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 204 (218)
T cd03255 152 ARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA 204 (218)
T ss_pred HHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH
Confidence 999999999999999999999999999999988753 345566776654
No 78
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-39 Score=321.36 Aligned_cols=186 Identities=33% Similarity=0.483 Sum_probs=162.3
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC---hHHhh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD---IKWLR 575 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~---~~~lR 575 (703)
.|+++||+-+||++ ..+|+||||+|++||.|||+||||||||||++.|.|+.+|++|+|.+||.++.... +..||
T Consensus 3 ~i~~~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 48999999999854 68999999999999999999999999999999999999999999999999998877 77889
Q ss_pred cceEEEccCCcccc-ccHHHHhccCCCC-------------CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChH
Q 005302 576 GRIGFVGQEPKLFR-MDISSNISYGCTQ-------------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGG 641 (703)
Q Consensus 576 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~~-------------~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGG 641 (703)
++||+++|++.|-. -|+.+|+..|.-. ..+.....+|++..|+.|...+- -++||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr---------a~~LSGG 151 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR---------ASTLSGG 151 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH---------hccCCcc
Confidence 99999999999976 6799999755421 23445566788888887765431 2589999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-----EEEEecchhH
Q 005302 642 QKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL-----LVKSLHFLSL 695 (703)
Q Consensus 642 QkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-----~~~~~~~~~~ 695 (703)
|+||++|||||+++|+|++=|||||+||+++.++|++.|++++. ++-+||.+-+
T Consensus 152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl 210 (258)
T COG3638 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL 210 (258)
T ss_pred hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH
Confidence 99999999999999999999999999999999999999987654 5788998765
No 79
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=7.5e-39 Score=324.65 Aligned_cols=186 Identities=33% Similarity=0.459 Sum_probs=156.7
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCh---HHhhc
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI---KWLRG 576 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~---~~lR~ 576 (703)
|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.|+.+++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999963 2579999999999999999999999999999999999999999999999999987764 35788
Q ss_pred ceEEEccCCcccc-ccHHHHhccCCC-----CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005302 577 RIGFVGQEPKLFR-MDISSNISYGCT-----QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (703)
Q Consensus 577 ~I~~V~Qd~~LF~-gTI~eNI~~g~~-----~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (703)
.++||+|++.+|. .|++||+.++.. ++..++++.++++..++.++..+.| ..||||||||++|||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la~ 150 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP---------EQLSGGEQQRVAIAR 150 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHHHH
Confidence 9999999999996 699999987521 1123456777888888776655443 479999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchhHH
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLSLY 696 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~~~ 696 (703)
||+++|++|||||||++||+++...+.+.|+++ ...+=.-|-+...
T Consensus 151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~ 200 (214)
T TIGR02673 151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLV 200 (214)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 999999999999999999999999999998764 2345556766543
No 80
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-39 Score=340.69 Aligned_cols=188 Identities=35% Similarity=0.491 Sum_probs=160.6
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+++|++....++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743224699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCC--ccccccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005302 579 GFVGQEP--KLFRMDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (703)
Q Consensus 579 ~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (703)
|||+|++ .++..|++|||.++.. ...+ ++++.++++..++.++....| .+||||||||++||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qrv~lAra 154 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP---------ARLSGGQKQRVAIAGA 154 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 9999998 4677899999998732 0122 355777888888877766544 4799999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 652 ILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
|+++|++|||||||++||+.+.+.+.+.|+++. -++-.-|-+..
T Consensus 155 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~ 203 (279)
T PRK13650 155 VAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE 203 (279)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 999999999999999999999999999987653 34556676654
No 81
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.2e-39 Score=324.61 Aligned_cols=182 Identities=31% Similarity=0.472 Sum_probs=154.7
Q ss_pred EEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEE
Q 005302 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF 580 (703)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~ 580 (703)
+++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ..+|+.|+|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 468999999742 469999999999999999999999999999999999999999999999999864 457889999
Q ss_pred EccCC--ccccccHHHHhccCCCC-CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCC
Q 005302 581 VGQEP--KLFRMDISSNISYGCTQ-DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT 657 (703)
Q Consensus 581 V~Qd~--~LF~gTI~eNI~~g~~~-~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ 657 (703)
|+|++ .+|+.|++||+.++... ...++++.++++..++.++..+.| ..||||||||++|||||+++|+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~ 146 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP---------LSLSGGQKQRLAIAAALLSGKD 146 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc---------hhCCHHHHHHHHHHHHHHhCCC
Confidence 99997 47889999999986431 123457888888888877655544 3699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchhHH
Q 005302 658 ILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLSLY 696 (703)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~~~ 696 (703)
+|+|||||++||+++.+.+.+.|++. .-++=+-|-+...
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~ 189 (205)
T cd03226 147 LLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFL 189 (205)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 99999999999999999999999765 2355566766543
No 82
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=5.5e-39 Score=327.22 Aligned_cols=186 Identities=31% Similarity=0.436 Sum_probs=150.7
Q ss_pred EEEEEEEEEcCCCC-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHH---hh
Q 005302 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW---LR 575 (703)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~---lR 575 (703)
|+++||+++|++.. ..++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999997421 146999999999999999999999999999999999999999999999999998877543 34
Q ss_pred -cceEEEccCCcccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005302 576 -GRIGFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (703)
Q Consensus 576 -~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (703)
+.|+||+|++.+|. .|++||+.++.. ...+ .+++.++++..++++...+.| ..||||||||++|
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~l 152 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP---------SELSGGERQRVAI 152 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHH
Confidence 68999999999995 699999987411 0112 234455555555544333222 4799999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchh
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLS 694 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~ 694 (703)
||||+++|++||||||||+||+++.+.+.+.|+++ .-.+=.-|-+.
T Consensus 153 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~ 203 (221)
T TIGR02211 153 ARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE 203 (221)
T ss_pred HHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999999999999999999999999999999754 23455667665
No 83
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-38 Score=340.73 Aligned_cols=191 Identities=28% Similarity=0.423 Sum_probs=154.3
Q ss_pred cEEEEEEEEEcCCCC--CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC-------
Q 005302 499 RIDFVDVSFRYSSRE--MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV------- 569 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i------- 569 (703)
.|+++||+|+|++.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999997421 24699999999999999999999999999999999999999999999999998653
Q ss_pred ---------ChHHhhcceEEEccCC--ccccccHHHHhccCCC-CCCCHHHHHHHHHHhchHHHHHcCCCCcc-cccCC-
Q 005302 570 ---------DIKWLRGRIGFVGQEP--KLFRMDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYE-TLVDD- 635 (703)
Q Consensus 570 ---------~~~~lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~e~i~~aa~~A~l~d~I~~LP~Gyd-T~vGe- 635 (703)
+...+|+.||||+|++ .+|++|++|||.++.. ...+.++..+ . +++.+..+ |++ ...+.
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcCC
Confidence 3567899999999998 7999999999998731 1234443322 1 12444443 333 23333
Q ss_pred -CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHH
Q 005302 636 -DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLY 696 (703)
Q Consensus 636 -~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~ 696 (703)
.+||||||||++|||||+++|++||||||||+||+.+++.+.+.|+++. -.+-.-|-+...
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~ 239 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHV 239 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 5899999999999999999999999999999999999999999987642 355666776643
No 84
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-39 Score=329.44 Aligned_cols=188 Identities=31% Similarity=0.417 Sum_probs=152.5
Q ss_pred cEEEEEEEEEcCCCC-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHH---h
Q 005302 499 RIDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW---L 574 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~---l 574 (703)
-|+++||+|+|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997532 146999999999999999999999999999999999999999999999999998887643 3
Q ss_pred h-cceEEEccCCccccc-cHHHHhccCCC-CCC----CHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005302 575 R-GRIGFVGQEPKLFRM-DISSNISYGCT-QDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (703)
Q Consensus 575 R-~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~----~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (703)
| +.++||+|++.+|.+ |++||+.++.. ... .++++.++++..++.+...+.| .+||||||||++
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgG~~qrl~ 155 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP---------SELSGGERQRVA 155 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHH
Confidence 3 689999999999975 99999987310 011 2234555666655544332221 479999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC----C-cEEEEecchhH
Q 005302 648 IARAILRDPTILILDEATSALDAESEHNIKVATLSN----G-LLVKSLHFLSL 695 (703)
Q Consensus 648 LARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~----~-~~~~~~~~~~~ 695 (703)
|||||+++|++|||||||++||+++.+.+.+.|+++ + -++=+-|-+..
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~ 208 (233)
T PRK11629 156 IARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL 208 (233)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 999999999999999999999999999999988764 2 34566676654
No 85
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=9.1e-39 Score=323.88 Aligned_cols=185 Identities=34% Similarity=0.510 Sum_probs=153.6
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCh---HHhhc
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI---KWLRG 576 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~---~~lR~ 576 (703)
|+++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999743 469999999999999999999999999999999999999999999999999987754 35788
Q ss_pred ceEEEccCCcccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005302 577 RIGFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (703)
Q Consensus 577 ~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (703)
.++||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.+...+.| ..||||||||++|||
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lar 149 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP---------AELSGGEQQRVAIAR 149 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh---------hhcCHHHHHHHHHHH
Confidence 9999999999998 599999987521 0112 345666677767665544333 379999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
||+++|++||||||||+||+++.+.+.+.|+++. -.+=.-|-...
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~ 198 (214)
T cd03292 150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKEL 198 (214)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 9999999999999999999999999999998753 24455565543
No 86
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.6e-39 Score=324.11 Aligned_cols=183 Identities=33% Similarity=0.514 Sum_probs=151.8
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ .+++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEE
Confidence 478999999974 46999999999999999999999999999999999999999999999999998654 3578899
Q ss_pred EEccCCcccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 580 FVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.+++.+.| .+||||||||++|||||+
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP---------HELSGGQQQRVALARALA 146 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999886 699999987522 0112 234556666666655544333 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHH
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLY 696 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~ 696 (703)
++|++|||||||++||+++.+.+.+.|+++. .++=.-|-+...
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 194 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEA 194 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH
Confidence 9999999999999999999999999998742 355666766543
No 87
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.5e-38 Score=321.01 Aligned_cols=168 Identities=35% Similarity=0.544 Sum_probs=149.0
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
+.|+++|++++|++. ..++++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 569999999999753 2479999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCC
Q 005302 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT 657 (703)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ 657 (703)
|+||+|++.+|++|++|||.+++ ..+++++.++++ .+. ....|||||+||++|||||+++|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~--~~~~~~~~~~l~--------------~~~--~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR--------------VSE--GGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccC--CCCHHHHHHHhh--------------ccC--CCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999998874 345555555443 111 125899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 658 ILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
+|||||||++||+++.+.+.+.|++..
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~ 172 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEF 172 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999998753
No 88
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.8e-38 Score=322.79 Aligned_cols=186 Identities=28% Similarity=0.444 Sum_probs=152.8
Q ss_pred EEEEEEEEEcCCCC-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
|+++||+++|++.+ ..++++|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||.++.. ....+|+.+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999997531 1269999999999999999999999999999999999999999999999999976 456788999
Q ss_pred EEEccCCccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 579 GFVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
+||+|++.+|.+ |++||+.+... ...+ .+++.++++..++.+...+.+ ..||||||||++|||||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral 151 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV---------GGFSTGMRQKVAIARAL 151 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhh---------hhcCHHHHHHHHHHHHH
Confidence 999999999995 99999986421 0112 344556666666655443211 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
+++|++|||||||++||+.+.+.+.+.|+++. -.+=.-|-...
T Consensus 152 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~ 198 (218)
T cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQE 198 (218)
T ss_pred hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 99999999999999999999999999998652 34555566543
No 89
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.6e-38 Score=323.62 Aligned_cols=185 Identities=24% Similarity=0.437 Sum_probs=151.4
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++||+++|++. ..++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||.++... ...+++.++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 5789999999753 25799999999999999999999999999999999999999999999999998764 367788999
Q ss_pred EEccCCccc-cccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 580 FVGQEPKLF-RMDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 580 ~V~Qd~~LF-~gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
||+|++.+| ..|++||+.++.. ...+ ++++.++++..++.+.. ++.+ ..||||||||++|||||+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~--~~LS~G~~qrv~la~al~ 149 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------NKRA--RTLSGGMKRKLSLAIALI 149 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------hChh--hhCCHHHHHHHHHHHHHh
Confidence 999999999 6899999987521 0112 23455555555554433 2221 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc---EEEEecchhH
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNGL---LVKSLHFLSL 695 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~---~~~~~~~~~~ 695 (703)
++|++|||||||++||+.+.+.+.+.|++... ++=.-|-+..
T Consensus 150 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~ 194 (220)
T cd03263 150 GGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDE 194 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 99999999999999999999999999987643 4455566554
No 90
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-38 Score=333.84 Aligned_cols=186 Identities=29% Similarity=0.488 Sum_probs=160.6
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
-|+++||+|+|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+++.|
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999742 4699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccCC--ccccccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005302 579 GFVGQEP--KLFRMDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (703)
Q Consensus 579 ~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (703)
|||+|++ .+|..|+.|||.++.. ...+ ++++.++++..++.++..+.| ..||||||||++||||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgG~~qrv~lara 152 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP---------YHLSYGQKKRVAIAGV 152 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh---------hhCCHHHHHHHHHHHH
Confidence 9999998 6899999999998631 0122 345677788888877665554 3699999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 652 ILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
|+++|++|||||||++||+.+.+.+.+.|+++. -.+-.-|-+..
T Consensus 153 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~ 200 (274)
T PRK13647 153 LAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDL 200 (274)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 999999999999999999999999999997663 45556676654
No 91
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-38 Score=325.70 Aligned_cols=189 Identities=33% Similarity=0.520 Sum_probs=165.0
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC-CCChHHhhcc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK-EVDIKWLRGR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~-~i~~~~lR~~ 577 (703)
-|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.|+. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48899999999865 68999999999999999999999999999999999999999999999999998 4889999999
Q ss_pred eEEEccCC--ccccccHHHHhccCCCC-CCCHH----HHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005302 578 IGFVGQEP--KLFRMDISSNISYGCTQ-DIKQQ----DIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (703)
Q Consensus 578 I~~V~Qd~--~LF~gTI~eNI~~g~~~-~~~~e----~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (703)
+|+|+|+| ++|..||.|.++||... ..+.+ ++.++++.++++++-..-| .+||||||||+|||-
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p---------~~LSGGqkqRvaIA~ 151 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP---------FNLSGGQKQRVAIAG 151 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc---------cccCCcceeeHHhhH
Confidence 99999999 99999999999999641 24444 4667788888877744333 479999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-----EEEEecchhHHHH
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVATLSNGL-----LVKSLHFLSLYVL 698 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-----~~~~~~~~~~~~~ 698 (703)
+|..+|++||||||||+||+...+.+.+.+++++. ++-.-|-+-.+..
T Consensus 152 vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~ 204 (235)
T COG1122 152 VLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLE 204 (235)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHh
Confidence 99999999999999999999999999999988753 5556676655443
No 92
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.6e-38 Score=322.70 Aligned_cols=187 Identities=29% Similarity=0.437 Sum_probs=154.3
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChH---Hhhc
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK---WLRG 576 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~---~lR~ 576 (703)
|+++||+++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 7899999999532 4799999999999999999999999999999999999999999999999999877644 3788
Q ss_pred ceEEEccCCcc-ccccHHHHhccCCC-CCCCH----HHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005302 577 RIGFVGQEPKL-FRMDISSNISYGCT-QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (703)
Q Consensus 577 ~I~~V~Qd~~L-F~gTI~eNI~~g~~-~~~~~----e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (703)
.++||+|++.+ +..|++||+.++.. ...+. +++.++++..++.+++.+.| ..||||||||++|||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lar 150 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP---------IQLSGGEQQRVGIAR 150 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCc---------hhCCHHHHHHHHHHH
Confidence 99999999987 56899999987521 12222 24556666666666554432 479999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHHH
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLYV 697 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~~ 697 (703)
||+++|++|||||||++||+++.+.+.+.|+++. -++=.-|-....-
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (222)
T PRK10908 151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLIS 201 (222)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 9999999999999999999999999999988653 3455567665443
No 93
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-38 Score=329.77 Aligned_cols=188 Identities=29% Similarity=0.397 Sum_probs=158.0
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC---CCcceEEECCEeCCCCChHHhh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE---PTNGQILIDGFPIKEVDIKWLR 575 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~---p~sG~I~idG~di~~i~~~~lR 575 (703)
.|+++||+++|++ +++|+|+||+|++||.++|+||||||||||+|+|+|+++ |++|+|.+||+|+.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999973 469999999999999999999999999999999999985 7999999999999988888899
Q ss_pred cceEEEccCCccccccHHHHhccCCC-------CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005302 576 GRIGFVGQEPKLFRMDISSNISYGCT-------QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (703)
Q Consensus 576 ~~I~~V~Qd~~LF~gTI~eNI~~g~~-------~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (703)
+.|+|++|++.+|+.|++|||.++.. .+..++++.++++..++++++..+. +. ...+||||||||++|
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~--~~~~LS~G~~qrv~l 153 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL---KQ--NALALSGGQQQRLCI 153 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHh---cC--CcccCCHHHHHHHHH
Confidence 99999999999999999999987621 0122345677888888876654321 11 115799999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC---CcEEEEecchh
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSN---GLLVKSLHFLS 694 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~---~~~~~~~~~~~ 694 (703)
||||+++|++|+|||||++||+++...+.+.|+++ ..++=.-|-+.
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~ 202 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQ 202 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 99999999999999999999999999999999864 23344456554
No 94
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-38 Score=346.17 Aligned_cols=183 Identities=28% Similarity=0.458 Sum_probs=156.4
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+++|+++ .++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+++.. ++.|
T Consensus 3 ~l~i~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCCC--CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 48999999999532 4699999999999999999999999999999999999999999999999999887654 5799
Q ss_pred EEEccCCcccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 579 GFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
|||+|++.+|. .|++|||+|+.. ...+ .+++.++++..++.++..+.| ..||||||||++|||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~QRvalARAL 149 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP---------RELSGGQRQRVAMGRAI 149 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999996 699999998732 0122 356778888889888777666 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-----EEEEecchh
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSNGL-----LVKSLHFLS 694 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-----~~~~~~~~~ 694 (703)
+++|++|+||||||+||+.+...+.+.|+++.. .+-.-|-+.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 196 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV 196 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 999999999999999999999999998876532 344445543
No 95
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3.3e-38 Score=326.03 Aligned_cols=186 Identities=32% Similarity=0.483 Sum_probs=152.5
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCh---HHhhc
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI---KWLRG 576 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~---~~lR~ 576 (703)
|+++||+++|+. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999972 2469999999999999999999999999999999999999999999999999987654 45788
Q ss_pred ceEEEccCCcccc-ccHHHHhccCCCC-------------CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHH
Q 005302 577 RIGFVGQEPKLFR-MDISSNISYGCTQ-------------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQ 642 (703)
Q Consensus 577 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~-------------~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQ 642 (703)
.++||+|++.+|. .|++||+.++... ...++++.++++..++.++..+. ...|||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG~ 150 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR---------ADQLSGGQ 150 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC---------cccCCHHH
Confidence 9999999999887 6999999875310 11233455566666655443321 14799999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHH
Q 005302 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLY 696 (703)
Q Consensus 643 kQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~ 696 (703)
|||++|||||+++|++||||||||+||+++.+.+.+.|+++. -++-+-|-+...
T Consensus 151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~ 209 (243)
T TIGR02315 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLA 209 (243)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 999999999999999999999999999999999999987652 245666766543
No 96
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-39 Score=343.27 Aligned_cols=175 Identities=31% Similarity=0.529 Sum_probs=157.1
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
..|+++||+.+|++ ..+++|+||+|++||.+++.|||||||||++++|+||.+|++|+|.+||+|+..++++ ++.
T Consensus 4 ~~l~i~~v~k~yg~---~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecCC---eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 36999999999983 5799999999999999999999999999999999999999999999999999997655 789
Q ss_pred eEEEccCCcccc-ccHHHHhccCCC-C-CCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005302 578 IGFVGQEPKLFR-MDISSNISYGCT-Q-DIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (703)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~-~-~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (703)
||+|+|+--||. .||+|||+||-. . ... ++++.++++.+++.++-.+.| ..|||||+||+||||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p---------~qLSGGQqQRVALAR 149 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP---------HQLSGGQQQRVALAR 149 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh---------hhhChHHHHHHHHHH
Confidence 999999999998 999999999953 1 122 247899999999999877766 469999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcE
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVATLSNGLL 686 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~ 686 (703)
||..+|++|+||||.||||.+-..+++..++++..-
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~ 185 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRE 185 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999888876543
No 97
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-38 Score=325.69 Aligned_cols=186 Identities=35% Similarity=0.507 Sum_probs=152.6
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC---hHHhhc
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD---IKWLRG 576 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~---~~~lR~ 576 (703)
|+++||+++|+++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++.+.+ ...+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4789999999741 46999999999999999999999999999999999999999999999999998876 467889
Q ss_pred ceEEEccCCcccc-ccHHHHhccCCCC-------------CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHH
Q 005302 577 RIGFVGQEPKLFR-MDISSNISYGCTQ-------------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQ 642 (703)
Q Consensus 577 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~-------------~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQ 642 (703)
.++||+|++.+|. .|++||+.++... +.+++++.++++..++.+...+. ...|||||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~ 149 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR---------ADQLSGGQ 149 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC---------cccCCHHH
Confidence 9999999999887 7999999875210 11233455555555554432211 14799999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHH
Q 005302 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLY 696 (703)
Q Consensus 643 kQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~ 696 (703)
|||++|||||+++|++||||||||+||+.+.+.+.+.|+++. -++=.-|-+...
T Consensus 150 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~ 208 (241)
T cd03256 150 QQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLA 208 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999999999999999999999999999999999999987652 245566766543
No 98
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-38 Score=320.15 Aligned_cols=181 Identities=29% Similarity=0.490 Sum_probs=151.9
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++||+|+|++ .++++|+||+|++| .+||+||||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|+.++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999974 46999999999999 99999999999999999999999999999999999998776 77899999
Q ss_pred EEccCCccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 580 FVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
||+|++.+|.+ |++||+.+... ...+ ++++.++++..++.++.. +.+ ..||||||||++|||||+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~--~~LS~G~~qrv~la~al~ 146 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-------KKI--GSLSGGMRRRVGIAQALV 146 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-------Cch--hhCCHHHHHHHHHHHHHh
Confidence 99999999986 99999986311 0111 345677777777765533 222 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchh
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLS 694 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~ 694 (703)
++|++|||||||++||+++.+.+.+.|++.. -.+=.-|-+.
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~ 190 (211)
T cd03264 147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVE 190 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 9999999999999999999999999998763 3333445544
No 99
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.6e-38 Score=322.11 Aligned_cols=180 Identities=32% Similarity=0.518 Sum_probs=151.0
Q ss_pred EEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEE
Q 005302 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF 580 (703)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~ 580 (703)
+++||+++|++ .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. .+|+.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 46899999974 46999999999999999999999999999999999999999999999998874 47889999
Q ss_pred EccCCcc---ccccHHHHhccCCCC---------CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005302 581 VGQEPKL---FRMDISSNISYGCTQ---------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (703)
Q Consensus 581 V~Qd~~L---F~gTI~eNI~~g~~~---------~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (703)
|+|++.+ |+.|++||+.++... ...++++.++++..++.++..+.| .+||||||||++|
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~l 143 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI---------GELSGGQQQRVLL 143 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc---------ccCCHHHHHHHHH
Confidence 9999987 678999999876321 112356777777777776654422 4799999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHHH
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLYV 697 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~~ 697 (703)
||||+++|++|||||||++||+++.+.+.+.|++.. -++-+-|-+...-
T Consensus 144 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~ 196 (213)
T cd03235 144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVL 196 (213)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 999999999999999999999999999999988753 3455667665443
No 100
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-38 Score=343.13 Aligned_cols=192 Identities=30% Similarity=0.434 Sum_probs=156.1
Q ss_pred EEEEEEEEEcCCCC-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHH---hh
Q 005302 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW---LR 575 (703)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~---lR 575 (703)
|+++||+|+|+++. +.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++.+++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997321 257999999999999999999999999999999999999999999999999998877544 57
Q ss_pred cceEEEccCCcccc-ccHHHHhccCCC-CCCCH----HHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005302 576 GRIGFVGQEPKLFR-MDISSNISYGCT-QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (703)
Q Consensus 576 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~~----e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (703)
+.||||+|++.+|. .|++|||.++.. ...+. +++.++++..++.++..+.| ..||||||||++||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qRv~lA 152 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYP---------AQLSGGQKQRVAIA 152 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHH
Confidence 89999999999987 799999987521 01222 34555555555544433322 47999999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHHHHhh
Q 005302 650 RAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLYVLIC 700 (703)
Q Consensus 650 RAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~~~~~ 700 (703)
|||+++|++||||||||+||+++.+.+.+.|+++. -++-.-|-+....-+|
T Consensus 153 raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~ 208 (343)
T PRK11153 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRIC 208 (343)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 99999999999999999999999999999998753 3555667766443333
No 101
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3.1e-38 Score=318.88 Aligned_cols=183 Identities=28% Similarity=0.402 Sum_probs=155.9
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+||.++.+. ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999963 4799999999999999999999999999999999999999999999999998764 56788999
Q ss_pred EEccCCccc-cccHHHHhccCCC-CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCC
Q 005302 580 FVGQEPKLF-RMDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT 657 (703)
Q Consensus 580 ~V~Qd~~LF-~gTI~eNI~~g~~-~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ 657 (703)
||+|++.+| +.|++||+.++.. ...+++++.++++..++.+...+.| ..||||||||++|||||+++|+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKV---------KGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhH---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 999999888 5899999987531 1235678888888888877654322 4699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHH
Q 005302 658 ILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLY 696 (703)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~ 696 (703)
+|+|||||++||+++.+.+.+.|++.. -.+=.-|-....
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~ 189 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEI 189 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 999999999999999999998887642 334455765543
No 102
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-38 Score=334.27 Aligned_cols=187 Identities=35% Similarity=0.501 Sum_probs=160.9
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
-|+++||+++|++. .+++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999753 25699999999999999999999999999999999999999999999999999988887888999
Q ss_pred EEEccCC--ccccccHHHHhccCCCC-CCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005302 579 GFVGQEP--KLFRMDISSNISYGCTQ-DIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (703)
Q Consensus 579 ~~V~Qd~--~LF~gTI~eNI~~g~~~-~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (703)
|||+|++ .+++.|+.|||.++... ..+ ++++.++++..++++++...| ..||||||||++||||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LS~G~~qrv~lara 154 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP---------HRLSGGQKQRVAIAGV 154 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc---------ccCCHHHHHHHHHHHH
Confidence 9999998 57788999999985210 122 345777888888888777665 3799999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 652 ILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
|+.+|++|||||||++||+.+.+.+.+.|+++. -++=.-|-+..
T Consensus 155 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~ 203 (279)
T PRK13635 155 LALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE 203 (279)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 999999999999999999999999999998653 34556676553
No 103
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=4.2e-38 Score=320.75 Aligned_cols=190 Identities=25% Similarity=0.400 Sum_probs=149.9
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHh-hcce
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL-RGRI 578 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~l-R~~I 578 (703)
|+++||+++|++ .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+.... |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999974 469999999999999999999999999999999999999999999999999988776654 6789
Q ss_pred EEEccCCccccc-cHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCC
Q 005302 579 GFVGQEPKLFRM-DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT 657 (703)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ 657 (703)
+||+|++.+|.+ |++||+.++.. ....++..+ +...+.+.+..++..+++.+ ..||||||||++|||||+++|+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~-~~~~~~~~~--~~~~~l~~~~~l~~~~~~~~--~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAY-ARRRAKRKA--RLERVYELFPRLKERRKQLA--GTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhh-hcCchhHHH--HHHHHHHHHHhhhhhhhCch--hhCCHHHHHHHHHHHHHhcCCC
Confidence 999999999986 99999998743 211111111 11112222222222233322 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHHH
Q 005302 658 ILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLYV 697 (703)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~~ 697 (703)
+|+|||||++||+++.+.+.+.|++.. -++-+-|-+....
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 196 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFAL 196 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 999999999999999999999997653 3455667665443
No 104
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2e-38 Score=321.25 Aligned_cols=182 Identities=29% Similarity=0.477 Sum_probs=150.8
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++||+++|++ .++++|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+||.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP--KDRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--ccceEE
Confidence 578999999974 469999999999999999999999999999999999999999999999999976554 357899
Q ss_pred EEccCCcccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 580 FVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.+++.+.| ..||||||||++|||||+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qr~~laral~ 146 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP---------KQLSGGQRQRVALGRAIV 146 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999985 699999987521 0112 234556666666665554433 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
++|++|||||||++||+++.+.+.+.|+++. -.+=.-|-...
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~ 193 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVE 193 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 9999999999999999999999999987642 34555576554
No 105
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3.1e-38 Score=324.92 Aligned_cols=192 Identities=28% Similarity=0.442 Sum_probs=151.8
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHh-hcce
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL-RGRI 578 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~l-R~~I 578 (703)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++.+.+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999973 469999999999999999999999999999999999999999999999999988876554 5779
Q ss_pred EEEccCCccccc-cHHHHhccCCCCCCCHHHH-------HHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHH
Q 005302 579 GFVGQEPKLFRM-DISSNISYGCTQDIKQQDI-------EWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAI 648 (703)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~~~~~~e~i-------~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaL 648 (703)
+||+|++.+|.+ |++|||.++.. ......+ ........+++.++.+ |++..... ..||||||||++|
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 154 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQ-ARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEI 154 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHh-hccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHH
Confidence 999999999987 99999988632 1100000 0001111234444443 44444443 4899999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHHH
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLYV 697 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~~ 697 (703)
||||+++|++|||||||++||+++.+.+.+.|+++. -++=.-|-+....
T Consensus 155 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~ 207 (236)
T cd03219 155 ARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVM 207 (236)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 999999999999999999999999999999987653 3455667665543
No 106
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=4.8e-38 Score=316.29 Aligned_cols=170 Identities=25% Similarity=0.418 Sum_probs=150.2
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.... ..+|+.++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 478999999974 46999999999999999999999999999999999999999999999999987643 56789999
Q ss_pred EEccCCccc-cccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCE
Q 005302 580 FVGQEPKLF-RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTI 658 (703)
Q Consensus 580 ~V~Qd~~LF-~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~I 658 (703)
|++|++.++ +.|++||+.++.+ ..+++++.++++..++.++... .+ ..||||||||++|||||+++|++
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~-------~~--~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHA-DHSDEQVEEALARVGLNGFEDR-------PV--AQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcc-cccHHHHHHHHHHcCChhhhcC-------ch--hhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999886 6899999998754 4467788888888888654322 11 47999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 659 LILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 659 LILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
|||||||++||+++.+.+.+.|++.
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~ 171 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGH 171 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999754
No 107
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=4.1e-38 Score=318.87 Aligned_cols=185 Identities=33% Similarity=0.483 Sum_probs=150.2
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC--CChHHhhcc
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE--VDIKWLRGR 577 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~--i~~~~lR~~ 577 (703)
|+++||+++|++ .++++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++.. .+...+|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999974 469999999999999999999999999999999999999999999999999853 455678899
Q ss_pred eEEEccCCcccc-ccHHHHhccCCC--CCCCH----HHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005302 578 IGFVGQEPKLFR-MDISSNISYGCT--QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (703)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~~~----e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (703)
++||+|++.+|. .|++||+.++.. .+.+. +++.++++..++.+.+.+.| ..||||||||++|||
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~ 148 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP---------AQLSGGQQQRVAIAR 148 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc---------cccCHHHHHHHHHHH
Confidence 999999999997 699999987521 12222 23444444444444333322 579999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHH
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLY 696 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~ 696 (703)
||+++|++|||||||++||+++.+.+.+.|+++. -++=.-|-+...
T Consensus 149 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~ 198 (213)
T cd03262 149 ALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFA 198 (213)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 9999999999999999999999999999998653 234455665543
No 108
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-38 Score=331.32 Aligned_cols=187 Identities=35% Similarity=0.555 Sum_probs=158.2
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++|++++|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999743 35799999999999999999999999999999999999999999999999999888878899999
Q ss_pred EEEccCC--ccccccHHHHhccCCC-CCCCHH----HHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005302 579 GFVGQEP--KLFRMDISSNISYGCT-QDIKQQ----DIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (703)
Q Consensus 579 ~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~e----~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (703)
+||+|++ .++..|++|||.++.. ...+.+ ++.++++..++.++..+.| .+||||||||++||||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~lara 156 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP---------QNLSGGQKQRVAIASV 156 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 9999998 4667899999987521 012323 3566777777776665543 5899999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 652 ILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
|+++|++|+|||||++||+.+.+.+.+.|+++. -.+-+-|-+..
T Consensus 157 l~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 205 (271)
T PRK13632 157 LALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE 205 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH
Confidence 999999999999999999999999999998652 34555666554
No 109
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.8e-38 Score=303.38 Aligned_cols=170 Identities=35% Similarity=0.525 Sum_probs=152.3
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|.+++|.|+|... + =.++++|++||+|||+||||||||||++|+.||..|++|+|.|||+|.....+ +++-++
T Consensus 2 l~L~~V~~~y~~~--~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P--~~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHL--P---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP--AERPVS 74 (231)
T ss_pred ccccceEEeeCcc--e---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc--ccCChh
Confidence 5688999999743 2 35789999999999999999999999999999999999999999999987654 467899
Q ss_pred EEccCCcccc-ccHHHHhccCCCCC-----CCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 580 FVGQEPKLFR-MDISSNISYGCTQD-----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~~~-----~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
+++||..||+ =||++||.+|-.+. .+.++++.++..+|+.++..++| ..||||||||+||||+|+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP---------~~LSGGqRQRvALARclv 145 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP---------GELSGGQRQRVALARCLV 145 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc---------cccCchHHHHHHHHHHHh
Confidence 9999999998 79999999997542 56788999999999999999998 359999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
|+-|||+||||.|+||+.-.++..+-+.++..
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~ 177 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCD 177 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887765543
No 110
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-38 Score=320.78 Aligned_cols=183 Identities=33% Similarity=0.496 Sum_probs=152.0
Q ss_pred EEEEEEEEEcCCCC-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
|+++|++++|++.. ..++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999997421 1479999999999999999999999999999999999999999999999999863 46789
Q ss_pred EEEccCCcccc-ccHHHHhccCCC-CCC----CHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 579 GFVGQEPKLFR-MDISSNISYGCT-QDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~----~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
+||+|++.+|. .|++||+.++.. ... ..+++.++++..++.++..+.| ..||||||||++|||||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~la~al 146 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP---------HQLSGGMRQRVALARAL 146 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc---------ccCCHHHHHHHHHHHHH
Confidence 99999999998 799999987521 011 2345666777777766555443 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhHH
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSLY 696 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~~ 696 (703)
+++|++|||||||++||+++.+.+.+.|+++ .-.+=+-|-+...
T Consensus 147 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~ 195 (220)
T cd03293 147 AVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEA 195 (220)
T ss_pred HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH
Confidence 9999999999999999999999999998754 2345666766543
No 111
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=6.5e-38 Score=320.98 Aligned_cols=188 Identities=29% Similarity=0.395 Sum_probs=155.6
Q ss_pred cEEEEEEEEEcCCCCC-cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHH---h
Q 005302 499 RIDFVDVSFRYSSREM-VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW---L 574 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~---l 574 (703)
-|+++||+++|++... .++++|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||+++.+.+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999975321 35999999999999999999999999999999999999999999999999998877643 3
Q ss_pred -hcceEEEccCCccccc-cHHHHhccCC-----CCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005302 575 -RGRIGFVGQEPKLFRM-DISSNISYGC-----TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (703)
Q Consensus 575 -R~~I~~V~Qd~~LF~g-TI~eNI~~g~-----~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (703)
++.++||+|++.+|.+ |+.|||.++. ++....+++.++++..++.+++.+.| ..||||||||++
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Ge~qrl~ 156 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP---------AQLSGGEQQRVA 156 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh---------hhCCHHHHHHHH
Confidence 3689999999999885 9999998641 10112456677777777776655544 369999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhH
Q 005302 648 IARAILRDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSL 695 (703)
Q Consensus 648 LARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~ 695 (703)
|||||+++|++|||||||++||+++.+.+.+.|++. ...+=.-|-...
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 209 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL 209 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 999999999999999999999999999999999654 234556676653
No 112
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-37 Score=321.33 Aligned_cols=185 Identities=37% Similarity=0.574 Sum_probs=155.0
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+|+|++ .++++|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999974 4699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCCccccccHHHHhccCCC-CCCCHHHHHHHHHHhchH-HHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCC
Q 005302 579 GFVGQEPKLFRMDISSNISYGCT-QDIKQQDIEWAAKQAYAH-DFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (703)
Q Consensus 579 ~~V~Qd~~LF~gTI~eNI~~g~~-~~~~~e~i~~aa~~A~l~-d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p 656 (703)
+|++|++.+|+.|++||+.++.. .+..++++.+.++..++. +...+ .-..||||||||++|||||+++|
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATR---------DVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhC---------CcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998632 112234556666665553 22111 11479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhH
Q 005302 657 TILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSL 695 (703)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~ 695 (703)
++|||||||++||+++.+.+.+.|+++ .-++=.-|-+..
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~ 194 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ 194 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 999999999999999999999988764 234555566554
No 113
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.8e-38 Score=322.88 Aligned_cols=183 Identities=33% Similarity=0.459 Sum_probs=150.3
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++.+.+. .++.+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNV 76 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccce
Confidence 3789999999974 469999999999999999999999999999999999999999999999999876553 36789
Q ss_pred EEEccCCcccc-ccHHHHhccCCCC-CC----C----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005302 579 GFVGQEPKLFR-MDISSNISYGCTQ-DI----K----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (703)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~~-~~----~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (703)
+||+|++.+|. .|++||+.++... .. + .+++.++++..++.+...+.| ..||||||||++|
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~l 147 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP---------AQLSGGQRQRVAL 147 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHH
Confidence 99999999996 6999999986320 11 1 233455555555544433322 4799999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
||||+++|++|||||||++||+++.+.+.+.|+++. -++=+-|-+..
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~ 199 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEE 199 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 999999999999999999999999999999987642 34566676654
No 114
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-38 Score=331.04 Aligned_cols=188 Identities=34% Similarity=0.506 Sum_probs=153.3
Q ss_pred cEEEEEEEEEcCCCC--CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC--hHHh
Q 005302 499 RIDFVDVSFRYSSRE--MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD--IKWL 574 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~--~~~l 574 (703)
.|+++||+|+|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999997421 146999999999999999999999999999999999999999999999999998754 4578
Q ss_pred hcceEEEccCC--ccccccHHHHhccCCC-CCCCHH----HHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHH
Q 005302 575 RGRIGFVGQEP--KLFRMDISSNISYGCT-QDIKQQ----DIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQR 645 (703)
Q Consensus 575 R~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~e----~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQR 645 (703)
|+.||||+|++ .+|+.|++|||.++.. ...+.+ ++.++++..++. +.+.... ..||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHH
Confidence 89999999998 6889999999998631 123333 344555555543 1122222 5899999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++. -++-.-|-+..
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 207 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMED 207 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999999999999999999999999999999987642 35666777654
No 115
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-38 Score=341.63 Aligned_cols=171 Identities=32% Similarity=0.504 Sum_probs=150.0
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5999999999973 469999999999999999999999999999999999999999999999999987654 46889
Q ss_pred EEEccCCcccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 579 GFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
|||+|++.||. .|++|||+|+.. ...+ ++++.++++..++.++..+.| ..||||||||++|||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~---------~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV---------DQISGGQQQRVALARAL 151 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999997 599999998632 0112 356777888888876654443 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
+++|++|+||||||+||+.+.+++.+.|+++
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 182 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIREL 182 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998765
No 116
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-38 Score=325.70 Aligned_cols=187 Identities=32% Similarity=0.492 Sum_probs=155.7
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCC--CCh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKE--VDI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-----p~sG~I~idG~di~~--i~~ 571 (703)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+||+++.+ .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5999999999973 469999999999999999999999999999999999975 689999999999875 345
Q ss_pred HHhhcceEEEccCCccccccHHHHhccCCC-CC-----CCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHH
Q 005302 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QD-----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-----~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (703)
..+|+.|+||+|++.+|.+|++||+.++.. .. ..++++.++++..++++++.. ..+. .+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHH
Confidence 678899999999999999999999987521 01 124567777888777665432 1222 58999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 644 QRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
||++|||||+++|++|||||||++||+++.+.+.+.|+++. -++-+-|-+..
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~ 210 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQ 210 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHH
Confidence 99999999999999999999999999999999999998764 24445566554
No 117
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-38 Score=331.12 Aligned_cols=187 Identities=28% Similarity=0.426 Sum_probs=151.7
Q ss_pred EEEEEEEEEcCCCC--CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC----CChHH
Q 005302 500 IDFVDVSFRYSSRE--MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE----VDIKW 573 (703)
Q Consensus 500 I~~~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~----i~~~~ 573 (703)
|+++||+|+|++.. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 1369999999999999999999999999999999999999999999999999863 34567
Q ss_pred hhcceEEEccCC--ccccccHHHHhccCCCC-CCCHH----HHHHHHHHhchH-HHHHcCCCCcccccCCCCCChHHHHH
Q 005302 574 LRGRIGFVGQEP--KLFRMDISSNISYGCTQ-DIKQQ----DIEWAAKQAYAH-DFIMSLPSGYETLVDDDLLSGGQKQR 645 (703)
Q Consensus 574 lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~~-~~~~e----~i~~aa~~A~l~-d~I~~LP~GydT~vGe~~LSGGQkQR 645 (703)
+|+.||||+|+| .+|+.|+.|||.|+... ..+.+ ++.++++..++. ++.... ...||||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~~LSgGqkqr 152 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKS---------PFELSGGQMRR 152 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCC---------cccCCHHHHHH
Confidence 899999999987 89999999999987320 12333 344445555552 222111 15799999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++. -.+-.-|-+..
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~ 206 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDD 206 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 999999999999999999999999999999999987653 34556676653
No 118
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=324.51 Aligned_cols=180 Identities=31% Similarity=0.395 Sum_probs=154.3
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++. .+|+.+
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 5999999999974 46999999999999999999999999999999999999999999999998864 467899
Q ss_pred EEEccCCcccc-ccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCC
Q 005302 579 GFVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT 657 (703)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ 657 (703)
+||+|++.+|. .|++||+.++.. ...++++.++++..++.++..+.| ..||||||||++|||||+++|+
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK-GQWRDAALQALAAVGLADRANEWP---------AALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc-chHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998 699999998632 223567778888887766543322 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhHH
Q 005302 658 ILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSLY 696 (703)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~~ 696 (703)
+|||||||++||+.+...+.+.|+++ .-++=+-|-....
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~ 197 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEA 197 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 99999999999999999999988764 2345666776643
No 119
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=9.6e-38 Score=323.75 Aligned_cols=190 Identities=34% Similarity=0.461 Sum_probs=155.6
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----cceEEECCEeCCCC--ChH
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT-----NGQILIDGFPIKEV--DIK 572 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~-----sG~I~idG~di~~i--~~~ 572 (703)
|+++||+++|++ .++++|+||+|++||++||+|+||||||||+|+|+|+++|+ +|+|.+||.++.+. +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999974 36999999999999999999999999999999999999998 99999999999763 456
Q ss_pred HhhcceEEEccCCccccccHHHHhccCCC-CC-----CCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005302 573 WLRGRIGFVGQEPKLFRMDISSNISYGCT-QD-----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI 646 (703)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-----~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRI 646 (703)
.+|+.|+||+|++.+|..|+.||+.++.. .. ..++++.++++..++.+++... .+.. -..||||||||+
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LSgG~~qrv 153 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDR---LHDS--ALGLSGGQQQRL 153 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhH---hhCC--cccCCHHHHHHH
Confidence 77899999999999999999999987521 01 1134566777777776443211 1111 147999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhHHH
Q 005302 647 AIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSLYV 697 (703)
Q Consensus 647 aLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~~~ 697 (703)
+|||||+++|++|||||||++||+.+.+.+.+.|+++. -.+-.-|-+....
T Consensus 154 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~ 207 (247)
T TIGR00972 154 CIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAA 207 (247)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHH
Confidence 99999999999999999999999999999999988764 3455557665443
No 120
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=325.78 Aligned_cols=189 Identities=35% Similarity=0.549 Sum_probs=156.8
Q ss_pred CCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCC--C
Q 005302 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKE--V 569 (703)
Q Consensus 497 ~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-----p~sG~I~idG~di~~--i 569 (703)
.+.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 457999999999974 469999999999999999999999999999999999996 589999999999863 4
Q ss_pred ChHHhhcceEEEccCCccccccHHHHhccCCC--CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChH
Q 005302 570 DIKWLRGRIGFVGQEPKLFRMDISSNISYGCT--QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGG 641 (703)
Q Consensus 570 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~--~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGG 641 (703)
+...+|+.|+||+|++.+|+.|++||+.++.. ...+ ++++.++++..++.+++.. .+.. .+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD-------KLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH-------HHhcCCCCCCHH
Confidence 56678999999999999999999999987521 0122 3456777777777544432 2222 479999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 642 QKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 642 QkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
||||++|||||+++|++|||||||++||+++++.+.+.|+++. -++-.-|-+..
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~ 217 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQ 217 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998763 33455566544
No 121
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-38 Score=325.58 Aligned_cols=189 Identities=31% Similarity=0.443 Sum_probs=156.2
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCC--CCh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKE--VDI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-----~sG~I~idG~di~~--i~~ 571 (703)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.+||+++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5999999999974 4699999999999999999999999999999999999997 48999999999863 345
Q ss_pred HHhhcceEEEccCCccccccHHHHhccCCCC-C-C----CHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHH
Q 005302 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCTQ-D-I----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~-~----~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (703)
..+|+.|+||+|++.+|+.|++|||.++... . . .++++.++++..++.+.+ +..+++.. .+||||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~~--~~LSgG~~qr 158 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNTNA--LSLSGGQQQR 158 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhCCc--ccCCHHHHHH
Confidence 6788999999999999999999999986310 1 1 134566677777765433 23345532 5899999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
++|||||+++|++|||||||++||+.+.+.+.+.|+++. -++-.-|-+..
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~ 211 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQ 211 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999999999999999999999999999999998774 34455676654
No 122
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=6.8e-38 Score=307.83 Aligned_cols=154 Identities=42% Similarity=0.657 Sum_probs=141.0
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++|++++|++. ..++++|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999853 256999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEE
Q 005302 580 FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTIL 659 (703)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~IL 659 (703)
||+|++.+|++|++||+ ||||||||++|||||+++|++|
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhCCc----EEEEecchhH
Q 005302 660 ILDEATSALDAESEHNIKVATLSNGL----LVKSLHFLSL 695 (703)
Q Consensus 660 ILDEaTSaLD~~tE~~I~~al~~~~~----~~~~~~~~~~ 695 (703)
||||||++||+.+.+.+.+.|++... .+=.-|-...
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 158 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPET 158 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 99999999999999999999977532 3445565543
No 123
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=6.7e-38 Score=314.32 Aligned_cols=171 Identities=25% Similarity=0.331 Sum_probs=149.2
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++|++++|++ .++++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++.... ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 578999999974 46999999999999999999999999999999999999999999999999998765 46788999
Q ss_pred EEccCCcccc-ccHHHHhccCCCC-CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCC
Q 005302 580 FVGQEPKLFR-MDISSNISYGCTQ-DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT 657 (703)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~~-~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ 657 (703)
|++|++.+|. .|++||+.++... ...++++.++++..+++++....| ..||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPA---------AQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCCh---------hhcCHHHHHHHHHHHHHhcCCC
Confidence 9999999987 7999999876321 112446788888888877653322 4699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 658 ILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
+|+|||||++||+++.+.+.+.|++.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~ 173 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRAH 173 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999865
No 124
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.8e-38 Score=322.40 Aligned_cols=187 Identities=33% Similarity=0.440 Sum_probs=153.6
Q ss_pred EEEEEEEEEcCCCC-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChH---Hhh
Q 005302 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK---WLR 575 (703)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~---~lR 575 (703)
|+++|++++|++.. ..++++|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||+++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997431 12799999999999999999999999999999999999999999999999999877643 357
Q ss_pred cceEEEccCCcccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005302 576 GRIGFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (703)
Q Consensus 576 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (703)
+.++||+|++.+|. .|++|||.++.. ...+ .+++.++++..++.+.+.+.| ..||||||||++||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la 152 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP---------AQLSGGQKQRVGIA 152 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh---------hhCCHHHHHHHHHH
Confidence 89999999999997 699999987521 0112 334556666666655444322 47999999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhH
Q 005302 650 RAILRDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSL 695 (703)
Q Consensus 650 RAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~ 695 (703)
|||+++|++|||||||++||+++.+.+.+.|+++ .-++=+-|-+..
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~ 203 (233)
T cd03258 153 RALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEV 203 (233)
T ss_pred HHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 9999999999999999999999999999998754 235566676654
No 125
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1e-37 Score=313.56 Aligned_cols=171 Identities=26% Similarity=0.440 Sum_probs=143.8
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999974 469999999999999999999999999999999999999999999999999875 4567889999
Q ss_pred EEccCCccc-cccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCE
Q 005302 580 FVGQEPKLF-RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTI 658 (703)
Q Consensus 580 ~V~Qd~~LF-~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~I 658 (703)
|++|++.++ ..|++||+.++.....+++++.++++..++.+.. +..+ ..||||||||++||||++++|++
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~--~~LS~G~~~rv~laral~~~p~~ 148 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLI-------DYPC--GLLSSGQKRQVALLRLWMSKAKL 148 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhh-------hCCh--hhcCHHHHHHHHHHHHHhcCCCE
Confidence 999999986 5899999998632122233445555544443221 2222 36999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 659 LILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 659 LILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
|||||||++||+.+.+.+.+.|+++
T Consensus 149 lilDEP~~~LD~~~~~~l~~~l~~~ 173 (200)
T PRK13540 149 WLLDEPLVALDELSLLTIITKIQEH 173 (200)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999864
No 126
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-38 Score=323.58 Aligned_cols=185 Identities=28% Similarity=0.394 Sum_probs=148.9
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC------CCChH
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK------EVDIK 572 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~------~i~~~ 572 (703)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||.++. ..+..
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999974 46999999999999999999999999999999999999999999999999873 22346
Q ss_pred HhhcceEEEccCCccccc-cHHHHhccCCC--CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHH
Q 005302 573 WLRGRIGFVGQEPKLFRM-DISSNISYGCT--QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (703)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~--~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (703)
.+|+.|+||+|++.+|.+ |+.|||.++.. ...+ .+++.++++..++.+++.+.| ..||||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qr 149 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP---------LHLSGGQQQR 149 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHH
Confidence 788999999999999975 99999975311 0112 233444555555544443332 4799999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
++|||||+++|++|||||||++||+++...+.+.|+++. -++=.-|-...
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 203 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV 203 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 999999999999999999999999999999999988653 23444565543
No 127
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-37 Score=329.95 Aligned_cols=190 Identities=32% Similarity=0.487 Sum_probs=153.1
Q ss_pred cEEEEEEEEEcCCCC--CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC----ChH
Q 005302 499 RIDFVDVSFRYSSRE--MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV----DIK 572 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i----~~~ 572 (703)
.|+++||+|+|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997431 13699999999999999999999999999999999999999999999999999753 346
Q ss_pred HhhcceEEEccCC--ccccccHHHHhccCCCC-CCCHHHHHHHHHHhchHHHHHcCCCCcccccC-C--CCCChHHHHHH
Q 005302 573 WLRGRIGFVGQEP--KLFRMDISSNISYGCTQ-DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVD-D--DLLSGGQKQRI 646 (703)
Q Consensus 573 ~lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~~-~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vG-e--~~LSGGQkQRI 646 (703)
.+|+.||||+|++ .+|+.|+.|||.++... ..+.++..+. +++.+..+ |+++..- . ..||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 7899999999987 68999999999987321 2344333322 22333332 5553322 2 58999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhH
Q 005302 647 AIARAILRDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSL 695 (703)
Q Consensus 647 aLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~ 695 (703)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++ .-++-.-|-+..
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~ 208 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNE 208 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 9999999999999999999999999999999998864 244666677664
No 128
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.3e-37 Score=342.44 Aligned_cols=190 Identities=28% Similarity=0.449 Sum_probs=165.1
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+++|++ ..+|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+||.++.+++...++++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999974 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcc-ccccHHHHhccCCC---------CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005302 579 GFVGQEPKL-FRMDISSNISYGCT---------QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (703)
Q Consensus 579 ~~V~Qd~~L-F~gTI~eNI~~g~~---------~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (703)
|||+|++.+ |+.|++||+.++.. +..+.++++++++..++.++..+.+ ..||||||||++|
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~---------~~LSgGerQRv~I 150 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV---------TSLSGGERQRVLL 150 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHH
Confidence 999999998 78999999988642 1234567888888888877654321 4799999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHHHHhh
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLYVLIC 700 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~~~~~ 700 (703)
||||+++|++|||||||++||+.+...+.+.|+++. -.+-+.|-+.+-.-+|
T Consensus 151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~a 206 (402)
T PRK09536 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYC 206 (402)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC
Confidence 999999999999999999999999999999988764 3456778877654433
No 129
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-37 Score=321.90 Aligned_cols=186 Identities=32% Similarity=0.470 Sum_probs=151.7
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
++++||+++|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999852 46999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCcccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHH
Q 005302 580 FVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARA 651 (703)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARA 651 (703)
||+|++.+|. .|++||+.++.. ...+ .+++.++++..++.+ +..... .+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999996 799999987521 0112 223344444444321 011222 4799999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHH
Q 005302 652 ILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLY 696 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~ 696 (703)
|+++|++|||||||++||+++.+.+.+.|+++. -++=.-|-+...
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~ 199 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEA 199 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH
Confidence 999999999999999999999999999988652 356666776643
No 130
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=328.59 Aligned_cols=188 Identities=33% Similarity=0.473 Sum_probs=158.5
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
-|+++||+|+|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999853234699999999999999999999999999999999999999999999999999887878889999
Q ss_pred EEEccCC--ccccccHHHHhccCCC-CCCCH----HHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005302 579 GFVGQEP--KLFRMDISSNISYGCT-QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (703)
Q Consensus 579 ~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~----e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (703)
+||+|++ .+++.|+.|||.++.. ...+. +++.++++..++.++....| ..||||||||++||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lAra 154 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP---------ARLSGGQKQRVAVAGI 154 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 9999998 4788999999987521 12233 34567777777776654422 4799999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 652 ILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
|+++|++|||||||++||+.+.+.+.+.|+++. .++-.-|-+..
T Consensus 155 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~ 203 (277)
T PRK13642 155 IALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE 203 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999999999999999999999999987552 35666676654
No 131
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=6.6e-38 Score=315.70 Aligned_cols=181 Identities=28% Similarity=0.433 Sum_probs=149.3
Q ss_pred EEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC----hHHhhcc
Q 005302 502 FVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD----IKWLRGR 577 (703)
Q Consensus 502 ~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~----~~~lR~~ 577 (703)
++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..+. ....|+.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4799999974 46999999999999999999999999999999999999999999999999976543 2346789
Q ss_pred eEEEccCCcccc-ccHHHHhccCCC-----CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005302 578 IGFVGQEPKLFR-MDISSNISYGCT-----QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (703)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~-----~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (703)
++||+|++.+|. .|++||+.++.. ....++++.++++..++.++..+. + .+||||||||++||||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~--~~lS~G~~qr~~lara 148 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQK-------I--YELSGGEQQRVALARA 148 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCC-------h--hhCCHHHHHHHHHHHH
Confidence 999999999997 799999987421 011234566677777765543322 1 4699999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchh
Q 005302 652 ILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLS 694 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~ 694 (703)
|+++|++|||||||++||+++.+.+.+.|+++. ..+=+-|-..
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 195 (206)
T TIGR03608 149 ILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195 (206)
T ss_pred HHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 999999999999999999999999999998752 3455567654
No 132
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-38 Score=332.53 Aligned_cols=189 Identities=31% Similarity=0.413 Sum_probs=153.1
Q ss_pred cEEEEEEEEEcCCCC--CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC----CChH
Q 005302 499 RIDFVDVSFRYSSRE--MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE----VDIK 572 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~----i~~~ 572 (703)
.|+++||+|+|++.+ ..++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||+++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997431 1469999999999999999999999999999999999999999999999999863 3466
Q ss_pred HhhcceEEEccCC--ccccccHHHHhccCCC-CCCCHH----HHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHH
Q 005302 573 WLRGRIGFVGQEP--KLFRMDISSNISYGCT-QDIKQQ----DIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (703)
Q Consensus 573 ~lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~e----~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (703)
.+|+.||||+|++ .+|+.|+.|||.++.. ...+.+ ++.++++..++++.+. ++. -..||||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~------~~~--~~~LSgGq~qr 153 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL------ARS--PFELSGGQMRR 153 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh------hCC--cccCCHHHHHH
Confidence 7889999999997 7899999999998632 122333 3455555555542221 111 14799999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
++|||||+.+|++||||||||+||+.+.+.+.+.|+++. -++-.-|-+..
T Consensus 154 v~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~ 208 (290)
T PRK13634 154 VAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMED 208 (290)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999999999999999999999999999999887652 35666677664
No 133
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-37 Score=314.90 Aligned_cols=180 Identities=31% Similarity=0.490 Sum_probs=152.7
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++|++++|++. . .|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5789999999742 2 39999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEccCCccccc-cHHHHhccCCCCC-----CCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 580 FVGQEPKLFRM-DISSNISYGCTQD-----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~~~-----~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
||+|++.+|.+ |++||+.++.... .+++++.++++..++.+...+.| ..||||||||++|||||+
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP---------GELSGGERQRVALARVLV 144 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc---------ccCCHHHHHHHHHHHHHh
Confidence 99999999985 9999998753211 23557888888888887766655 369999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
++|++|||||||++||+++.+.+.+.|+++. -.+=.-|-+..
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 191 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPED 191 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 9999999999999999999999999997642 34556666543
No 134
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.7e-37 Score=317.63 Aligned_cols=184 Identities=28% Similarity=0.421 Sum_probs=152.7
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
-|+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4899999999973 4699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccCCccccccHHHHhccCC---CCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhc
Q 005302 579 GFVGQEPKLFRMDISSNISYGC---TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 579 ~~V~Qd~~LF~gTI~eNI~~g~---~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~ 653 (703)
+||+|++.+|+.|++||+.++. ....+++++.++++..++.+ +.... ..||||||||++|||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999998641 11112334445555554432 12222 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
++|++|||||||++||+.+.+.+.+.|++.. -++=.-|-...
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~ 200 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE 200 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH
Confidence 9999999999999999999999999887642 24555566543
No 135
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-37 Score=315.36 Aligned_cols=183 Identities=23% Similarity=0.357 Sum_probs=152.8
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... ...+|+.++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999974 4699999999999999999999999999999999999999999999999998753 356788999
Q ss_pred EEccCCccccc-cHHHHhccCCC-CCC----CHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 580 FVGQEPKLFRM-DISSNISYGCT-QDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~-~~~----~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
||+|++.+|.+ |++||+.++.. ... .++++.++++..++.++..+.| ..||||||||++|||||+
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qr~~la~al~ 147 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV---------KTYSGGMRRRLEIARSLV 147 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 99999999885 99999986411 011 2345677777777766554432 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhH
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSL 695 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~ 695 (703)
.+|++|||||||++||+++.+.+.+.|+++ .-++-.-|-+..
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~ 194 (220)
T cd03265 148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEE 194 (220)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999999999999999999999988764 234556676554
No 136
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.7e-38 Score=327.99 Aligned_cols=183 Identities=34% Similarity=0.447 Sum_probs=153.0
Q ss_pred EEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHh----hc
Q 005302 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL----RG 576 (703)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~l----R~ 576 (703)
.++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 46688888863 469999999999999999999999999999999999999999999999999988765543 46
Q ss_pred ceEEEccCCcccc-ccHHHHhccCCC-----CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005302 577 RIGFVGQEPKLFR-MDISSNISYGCT-----QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (703)
Q Consensus 577 ~I~~V~Qd~~LF~-gTI~eNI~~g~~-----~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (703)
+++||+|++.+|. .|+.|||.++.. ....++++.++++..++.+++...| ..||||||||++|||
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrv~lAr 173 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP---------DELSGGMQQRVGLAR 173 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc---------ccCCHHHHHHHHHHH
Confidence 8999999999985 699999987421 0112356777888888877766655 369999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhH
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSL 695 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~ 695 (703)
||+++|++|||||||++||+.+.+.+.+.|+++ ...+-+-|-+..
T Consensus 174 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~ 223 (269)
T cd03294 174 ALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDE 223 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999999999999999999999999988765 234556676654
No 137
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.5e-37 Score=324.54 Aligned_cols=201 Identities=27% Similarity=0.419 Sum_probs=167.6
Q ss_pred HHHHHhhhcCCCCccccccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC
Q 005302 472 EKVFQLMDLMPSDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 472 ~Ri~dil~~~~e~~~~~~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+.+.+++..++++. +..+.+...+.|+++||++. + .++|+|+||+|++||++||+|+||||||||+++|+|+
T Consensus 15 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~nls~~--~---~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 15 EGFGELLEKAKQEN---NDRKHSSDDNNLFFSNLCLV--G---APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHHhcccccc---cccccCCCCCeEEEEEEEEe--c---ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56777776655532 22333334567999999995 1 4699999999999999999999999999999999999
Q ss_pred CCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCccc
Q 005302 552 YEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYET 631 (703)
Q Consensus 552 y~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT 631 (703)
++|++|+|.+|| .|+||+|++.+|++|++||+.++. ..++.++.++++.+++.+.+..+|.+++|
T Consensus 87 ~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 151 (282)
T cd03291 87 LEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLEEDITKFPEKDNT 151 (282)
T ss_pred CCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhccc--ccCHHHHHHHHHHhCCHHHHHhccccccc
Confidence 999999999998 399999999999999999999873 23455677788888999999999999999
Q ss_pred ccCC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHH-Hh---CCcEEEEecchhH
Q 005302 632 LVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVAT-LS---NGLLVKSLHFLSL 695 (703)
Q Consensus 632 ~vGe--~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al-~~---~~~~~~~~~~~~~ 695 (703)
.+++ ..||||||||++|||||+++|++|||||||++||+++...+.+.+ +. ..-++-.-|-+..
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~ 221 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEH 221 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHH
Confidence 8876 599999999999999999999999999999999999999887643 32 2345556666553
No 138
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=325.52 Aligned_cols=192 Identities=30% Similarity=0.399 Sum_probs=157.9
Q ss_pred CCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCC--C
Q 005302 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKE--V 569 (703)
Q Consensus 497 ~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-----~sG~I~idG~di~~--i 569 (703)
.+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||+++.+ .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 357999999999973 4699999999999999999999999999999999999985 89999999999975 3
Q ss_pred ChHHhhcceEEEccCCccccccHHHHhccCCC------CC-CCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHH
Q 005302 570 DIKWLRGRIGFVGQEPKLFRMDISSNISYGCT------QD-IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQ 642 (703)
Q Consensus 570 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~------~~-~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQ 642 (703)
+...+|+.++||+|++.+|++|+.||+.++.. +. ..++++.++++..++.+++... ++.. ...|||||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LSgGq 168 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDR---LHEP--GTGLSGGQ 168 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHH---hhCC--cccCCHHH
Confidence 55678899999999999999999999987521 01 1134567777777776544311 1111 14799999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhHH
Q 005302 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSLY 696 (703)
Q Consensus 643 kQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~~ 696 (703)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. -++-+-|-+...
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~ 225 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQA 225 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHH
Confidence 999999999999999999999999999999999999998764 345566766554
No 139
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-37 Score=327.90 Aligned_cols=185 Identities=30% Similarity=0.479 Sum_probs=157.5
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
++++||+++|+++ .++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.+||+++...+...+++.++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999743 46999999999999999999999999999999999999999999999999998877788899999
Q ss_pred EEccCC--ccccccHHHHhccCCC-CCCCH----HHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 580 FVGQEP--KLFRMDISSNISYGCT-QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 580 ~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~----e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
||+|++ .+|+.|+.||+.++.. ...+. +++.++++..++.++..+.| ..||||||||++|||||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrl~laraL 152 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP---------HHLSGGEKKRVAIAGVI 152 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc---------ccCCHHHHHHHHHHHHH
Confidence 999997 4789999999987521 02232 34677777778776655544 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
+.+|++|||||||++||+.+.+.+.+.++++. -++-.-|-+..
T Consensus 153 ~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~ 200 (277)
T PRK13652 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL 200 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 99999999999999999999999999887542 34566676653
No 140
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-37 Score=324.19 Aligned_cols=185 Identities=27% Similarity=0.392 Sum_probs=158.1
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 4899999999974 4699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCCccccc-cHHHHhccCCC---------CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005302 579 GFVGQEPKLFRM-DISSNISYGCT---------QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (703)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~---------~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (703)
+||+|++.++.+ |+.||+.++.. +..+++++.++++..++.+++...| .+||||||||++|
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~l 158 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV---------DSLSGGERQRAWI 158 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc---------ccCCHHHHHHHHH
Confidence 999999877664 99999997521 0123456777888888876655543 3699999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhH
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSL 695 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~ 695 (703)
||||+.+|++|||||||++||+++.+.+.+.|+++ ..++=.-|-+..
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~ 210 (265)
T PRK10575 159 AMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINM 210 (265)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99999999999999999999999999999988764 234556676553
No 141
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=8.9e-38 Score=308.34 Aligned_cols=156 Identities=35% Similarity=0.576 Sum_probs=140.1
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++|++|+|++. ++++++|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++... ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999754 24799999999999999999999999999999999999999999999999998776 667889999
Q ss_pred EEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEE
Q 005302 580 FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTIL 659 (703)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~IL 659 (703)
||+|++.+|++|++||| ...||||||||++||||++++|++|
T Consensus 79 ~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred EEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 3579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 660 ILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 660 ILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
||||||++||+++.+.+.+.|+++. -++=.-|-...
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 159 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTG 159 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 9999999999999999999998762 23444465543
No 142
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.3e-37 Score=319.41 Aligned_cols=186 Identities=27% Similarity=0.448 Sum_probs=148.4
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHh-hcce
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL-RGRI 578 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~l-R~~I 578 (703)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999974 469999999999999999999999999999999999999999999999999988776553 5789
Q ss_pred EEEccCCccccc-cHHHHhccCCC-CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcC
Q 005302 579 GFVGQEPKLFRM-DISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILR 654 (703)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r 654 (703)
+|++|++.+|.+ |++||+.++.. ...+.++.. ..+++.+..+ |++..... ..||||||||++|||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999997 99999997532 112222111 1223333333 33333333 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 655 DPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
+|++|||||||++||+++.+.+.+.|+++. -++=.-|-+..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~ 195 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRE 195 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 999999999999999999999999887542 24455566543
No 143
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.7e-37 Score=316.44 Aligned_cols=186 Identities=29% Similarity=0.417 Sum_probs=155.7
Q ss_pred EEEEEEEEEcCCCC-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChH---Hhh
Q 005302 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK---WLR 575 (703)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~---~lR 575 (703)
++++||+++|++.+ ...+++|+||++++||++||+|+||||||||+++|+|+++|++|+|++||+++.+.+.. .+|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999997431 15699999999999999999999999999999999999999999999999999877643 578
Q ss_pred cceEEEccCCcccc-ccHHHHhccCCC--CCCCH----HHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005302 576 GRIGFVGQEPKLFR-MDISSNISYGCT--QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (703)
Q Consensus 576 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~~~----e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (703)
+.++||+|++.+|. .|+.||+.++.. +..+. +++.++++..++.+++.+.| ..||||||||++|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrv~l 152 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP---------HNLSGGQKQRVAI 152 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHH
Confidence 99999999999998 799999987632 01222 34566667667766665544 4799999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchh
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLS 694 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~ 694 (703)
||||+++|++|||||||++||+++.+.+.+.|++. ...+=.-|-..
T Consensus 153 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 153 ARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR 203 (220)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 99999999999999999999999999998888654 34555667765
No 144
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.5e-37 Score=323.28 Aligned_cols=183 Identities=32% Similarity=0.449 Sum_probs=151.1
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC---------
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD--------- 570 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~--------- 570 (703)
|+++||+|+|++ .++++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++.+++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999974 46999999999999999999999999999999999999999999999999997653
Q ss_pred ----hHHhhcceEEEccCCcccc-ccHHHHhccCCC--CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCC
Q 005302 571 ----IKWLRGRIGFVGQEPKLFR-MDISSNISYGCT--QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLS 639 (703)
Q Consensus 571 ----~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LS 639 (703)
...+|+.++||+|++.+|. .|+.||+.++.. ...+ ++++.++++..++.+.+.+.| ..||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS 148 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP---------AQLS 148 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh---------hhcC
Confidence 2467899999999999985 899999987521 0112 234555666666655544333 4799
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchh
Q 005302 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLS 694 (703)
Q Consensus 640 GGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~ 694 (703)
||||||++|||||+++|++|||||||++||+++...+.+.|+++. -++-.-|-+.
T Consensus 149 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 208 (252)
T TIGR03005 149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG 208 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 999999999999999999999999999999999999999987642 2455556654
No 145
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.1e-37 Score=311.00 Aligned_cols=177 Identities=34% Similarity=0.455 Sum_probs=153.9
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChH---Hh
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK---WL 574 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~---~l 574 (703)
..|++++|+|+|++ ..|++|+||+|++||.++|+||||||||||+|++.|+..|++|+|.++|.|+.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 36999999999974 5799999999999999999999999999999999999999999999999999988864 56
Q ss_pred hcceEEEccCCcccc-ccHHHHhccCCC--CCCCHHHHHH----HHHHhchHHH-HHcCCCCcccccCCCCCChHHHHHH
Q 005302 575 RGRIGFVGQEPKLFR-MDISSNISYGCT--QDIKQQDIEW----AAKQAYAHDF-IMSLPSGYETLVDDDLLSGGQKQRI 646 (703)
Q Consensus 575 R~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~~~e~i~~----aa~~A~l~d~-I~~LP~GydT~vGe~~LSGGQkQRI 646 (703)
|+++|+++|+.-||+ -||.||++|--. .+.+++++++ -++++|+... -..+| +.||||.+.|.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P---------sELSGGM~KRv 154 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP---------SELSGGMRKRV 154 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc---------hhhcchHHHHH
Confidence 999999999999998 689999998321 2456666655 3455666555 33443 57999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcE
Q 005302 647 AIARAILRDPTILILDEATSALDAESEHNIKVATLSNGLL 686 (703)
Q Consensus 647 aLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~ 686 (703)
|||||+.-||+|+++|||||+|||.+...+.+-|+++++-
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~ 194 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDA 194 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999888764
No 146
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.3e-37 Score=338.29 Aligned_cols=182 Identities=29% Similarity=0.425 Sum_probs=153.2
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.. ++.|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999974 4699999999999999999999999999999999999999999999999999876653 6789
Q ss_pred EEEccCCcccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 579 GFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
|||+|++.+|. .|++|||+|+.. ...+ ++++.++++..++.++..+.| ..||||||||++|||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~---------~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP---------GQLSGGQQQRVALARAL 149 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999996 799999998732 1122 345666677666655544433 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-----EEEEecchh
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSNGL-----LVKSLHFLS 694 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-----~~~~~~~~~ 694 (703)
+++|++|+||||||+||+.+.+.+.+.|+++.. .+-.-|-..
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ 196 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE 196 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 999999999999999999999999999876532 344556554
No 147
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-37 Score=325.91 Aligned_cols=186 Identities=31% Similarity=0.505 Sum_probs=154.0
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC--CCChHHhhc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK--EVDIKWLRG 576 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~--~i~~~~lR~ 576 (703)
-|+++||+|+|+++ .++++|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSDG--THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 48999999999732 46999999999999999999999999999999999999999999999999984 345667899
Q ss_pred ceEEEccCC--ccccccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005302 577 RIGFVGQEP--KLFRMDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (703)
Q Consensus 577 ~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (703)
.||||+|++ .+|+.|++|||.++.. ...+ .+++.++++..+++++..+- -.+||||||||++||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---------~~~LS~G~~qrl~la 153 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKP---------THCLSFGQKKRVAIA 153 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCC---------cccCCHHHHHHHHHH
Confidence 999999998 6789999999987521 0122 24456666777775543211 148999999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 650 RAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 650 RAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
|||+.+|++|||||||++||+++.+.+.+.|+++. -++-.-|-+..
T Consensus 154 raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~ 204 (283)
T PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI 204 (283)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 99999999999999999999999999988887542 44566677654
No 148
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.3e-37 Score=310.77 Aligned_cols=183 Identities=22% Similarity=0.343 Sum_probs=155.7
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++|++++|++ .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.... ..++++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 689999999974 46999999999999999999999999999999999999999999999999997654 56788999
Q ss_pred EEccCCcccc-ccHHHHhccCCCC--CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCC
Q 005302 580 FVGQEPKLFR-MDISSNISYGCTQ--DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (703)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~~--~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p 656 (703)
+++|++.++. .|++||+.++.+. ..+++++.++++..++.++.... ...||||||||++|||||+++|
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LS~G~~qrl~la~al~~~p 148 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVP---------VRQLSAGQQRRVALARLWLTRA 148 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCC---------hhhcCHHHHHHHHHHHHHhcCC
Confidence 9999998886 6999999876421 13456788888888887654321 1479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchhH
Q 005302 657 TILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLSL 695 (703)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~~ 695 (703)
++|||||||++||+++.+.+.+.|++. .-++=.-|-+..
T Consensus 149 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 191 (204)
T PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP 191 (204)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh
Confidence 999999999999999999999988764 234555565544
No 149
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.6e-37 Score=339.70 Aligned_cols=172 Identities=29% Similarity=0.489 Sum_probs=152.0
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++|++++|++ .++++|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.+.. ++.|
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999974 4699999999999999999999999999999999999999999999999999876653 5789
Q ss_pred EEEccCCccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 579 GFVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
|||+|++.||.. |++|||+|+.. ...+ ++++.++++..++.++..+.| ..||||||||++|||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p---------~~LSgGq~QRVaLARaL 159 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP---------HQLSGGQQQRVAIARAV 159 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHHHHH
Confidence 999999999965 99999998732 0112 346778888888888877766 46999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
+++|++|+||||||+||..+...+.+.|+++.
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~ 191 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQ 191 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987753
No 150
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-37 Score=312.81 Aligned_cols=180 Identities=27% Similarity=0.476 Sum_probs=147.1
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++|++++|++ .++++|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.. .+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999973 469999999999999999999999999999999999999999999999998853 5688999
Q ss_pred EEccCCccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 580 FVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
||+|++.+|.+ |++||+.++.. ...+ ++++.++++..++.+..... ..+||||||||++|||||+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKR---------VEELSKGNQQKVQFIAAVI 144 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCc---------HhhCCHHHHHHHHHHHHHh
Confidence 99999999985 99999987521 0111 23444555555554433221 1479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
++|++|||||||++||+++.+.+.+.|++.. -.+-.-|-+..
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~ 190 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMEL 190 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 9999999999999999999999999987652 35556676554
No 151
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.6e-37 Score=337.57 Aligned_cols=182 Identities=31% Similarity=0.458 Sum_probs=153.2
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||+++.+.+. .++.|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3889999999974 469999999999999999999999999999999999999999999999999987653 46789
Q ss_pred EEEccCCcccc-ccHHHHhccCCCC-----CCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005302 579 GFVGQEPKLFR-MDISSNISYGCTQ-----DIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (703)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~~-----~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (703)
|||+|++.+|. .|++|||.|+... ..+ ++++.++++..++.++..+.| ..||||||||++|
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGq~QRval 147 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP---------AQLSGGQKQRVAL 147 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHH
Confidence 99999999997 5999999987320 112 346667777777766555443 4799999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-----EEEEecchh
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSNGL-----LVKSLHFLS 694 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-----~~~~~~~~~ 694 (703)
||||+++|++|+||||||+||+.+.+.+.+.|+++.. .+-.-|-+.
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ 198 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE 198 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 9999999999999999999999999999999876532 344445543
No 152
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-37 Score=322.44 Aligned_cols=193 Identities=31% Similarity=0.444 Sum_probs=157.5
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCC--CC
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKE--VD 570 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-----p~sG~I~idG~di~~--i~ 570 (703)
..|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 36999999999974 469999999999999999999999999999999999998 699999999999863 56
Q ss_pred hHHhhcceEEEccCCccccccHHHHhccCCCC-CC---CHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHH
Q 005302 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCTQ-DI---KQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQ 644 (703)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~~---~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQ 644 (703)
...+|+.++||+|++.+|.+|++||+.++... .. .++++.++++.+++.+.+. +.... ..|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHHH
Confidence 67789999999999999999999999986320 11 1345566666666543322 22222 479999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhHHHHhh
Q 005302 645 RIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSLYVLIC 700 (703)
Q Consensus 645 RIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~~~~~~ 700 (703)
|++|||||+++|++|||||||++||+++.+.+.+.|+++. -++-.-|-+....-+|
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~ 220 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVS 220 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 9999999999999999999999999999999999998763 3455667665443333
No 153
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-37 Score=320.80 Aligned_cols=184 Identities=24% Similarity=0.375 Sum_probs=157.4
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999973 46999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEccCCccccc-cHHHHhccCCC---------CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005302 580 FVGQEPKLFRM-DISSNISYGCT---------QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (703)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~---------~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (703)
||+|++.+|.+ |+.||+.++.. +..+++++.++++..++.+.....| ..||||||||++||
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la 150 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL---------TDLSGGQRQRAFLA 150 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc---------ccCCHHHHHHHHHH
Confidence 99999999877 99999987521 0112346677777777765544322 57999999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 650 RAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 650 RAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
||++++|++|||||||++||+++.+.+.+.|+++. -.+-+-|-+..
T Consensus 151 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~ 200 (255)
T PRK11231 151 MVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQ 200 (255)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 99999999999999999999999999999987642 34566676654
No 154
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-37 Score=325.93 Aligned_cols=185 Identities=29% Similarity=0.462 Sum_probs=154.1
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC-hHHhhcce
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD-IKWLRGRI 578 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~-~~~lR~~I 578 (703)
|+++||+++|++. .++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++...+ ...+++.|
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 7899999999642 46999999999999999999999999999999999999999999999999998765 46778899
Q ss_pred EEEccCCc--cccccHHHHhccCCCC-CCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005302 579 GFVGQEPK--LFRMDISSNISYGCTQ-DIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (703)
Q Consensus 579 ~~V~Qd~~--LF~gTI~eNI~~g~~~-~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (703)
+||+|++. +++.|+.|||.++... ..+ ++++.++++..++.+++...| ..||||||||++||||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~lara 150 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSP---------KTLSGGQGQCVALAGI 150 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCc---------ccCCHHHHHHHHHHHH
Confidence 99999985 6789999999886321 122 344566666666665544332 4799999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 652 ILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
|+++|++|||||||++||+.+...+.+.++++. -.+-.-|-+..
T Consensus 151 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~ 198 (274)
T PRK13644 151 LTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE 198 (274)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 999999999999999999999999999986542 34556676654
No 155
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-37 Score=326.53 Aligned_cols=188 Identities=30% Similarity=0.468 Sum_probs=160.3
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc---ceEEECCEeCCCCChHHhh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN---GQILIDGFPIKEVDIKWLR 575 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~s---G~I~idG~di~~i~~~~lR 575 (703)
.|+++|++|+|++. ..++++|+||+|++||.+||+||||||||||+++|+|+++|++ |+|.+||.++...+...+|
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999753 2469999999999999999999999999999999999999998 8999999999887777889
Q ss_pred cceEEEccCC--ccccccHHHHhccCCC-CCCCH----HHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005302 576 GRIGFVGQEP--KLFRMDISSNISYGCT-QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (703)
Q Consensus 576 ~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~----e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (703)
++||||+|++ .+++.|+.|||.++.. ...+. +++.++++..++.++....| ..||||||||++|
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LS~G~~qrv~l 154 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP---------ANLSGGQKQRVAI 154 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc---------ccCCHHHHHHHHH
Confidence 9999999998 4778999999997632 12333 34677788888877665544 5799999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHH
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLY 696 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~ 696 (703)
||||+.+|++|||||||++||+.+.+.+.+.|+++. -++-.-|-+..-
T Consensus 155 aral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~ 207 (282)
T PRK13640 155 AGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA 207 (282)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 999999999999999999999999999999987642 355566777653
No 156
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=339.49 Aligned_cols=183 Identities=27% Similarity=0.455 Sum_probs=153.3
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence 4899999999974 469999999999999999999999999999999999999999999999999987654 35789
Q ss_pred EEEccCCcccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 579 GFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
|||+|++.+|. .|++|||.|+.. ...+ ++++.++++..++.++..+.| ..||||||||++|||||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~---------~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTL 148 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999997 599999998632 0122 245667777777766554443 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
+++|++|+||||||+||+++.+.+.+.|+++. -.+-.-|-+..
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~ 196 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH
Confidence 99999999999999999999999988887652 24555566553
No 157
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.4e-38 Score=296.94 Aligned_cols=169 Identities=32% Similarity=0.480 Sum_probs=143.5
Q ss_pred EEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEE
Q 005302 502 FVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFV 581 (703)
Q Consensus 502 ~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V 581 (703)
+++|- |... +.++|+|+||++.+||.+||+||||||||||+|.++-|..|++|++++-|+|++.++++.+|++|+|+
T Consensus 6 ~kq~~--y~a~-~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~ 82 (223)
T COG4619 6 LKQVG--YLAG-DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYC 82 (223)
T ss_pred HHHHH--hhcC-CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHH
Confidence 34443 4333 47899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccHHHHhccCC---CCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCC
Q 005302 582 GQEPKLFRMDISSNISYGC---TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDP 656 (703)
Q Consensus 582 ~Qd~~LF~gTI~eNI~~g~---~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p 656 (703)
.|.|-||.+||.||+-|-- ....|.....+-++.+++.+.+ +.. .+||||+||||+|+|-|---|
T Consensus 83 ~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~----------L~k~it~lSGGE~QriAliR~Lq~~P 152 (223)
T COG4619 83 AQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSI----------LTKNITELSGGEKQRIALIRNLQFMP 152 (223)
T ss_pred HcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhh----------hcchhhhccchHHHHHHHHHHhhcCC
Confidence 9999999999999998742 1134444444455555544433 222 489999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 657 TILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
+||+|||+|||||+.+.+.|++.|.+.
T Consensus 153 ~ILLLDE~TsALD~~nkr~ie~mi~~~ 179 (223)
T COG4619 153 KILLLDEITSALDESNKRNIEEMIHRY 179 (223)
T ss_pred ceEEecCchhhcChhhHHHHHHHHHHH
Confidence 999999999999999999999988653
No 158
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=7.8e-38 Score=340.18 Aligned_cols=172 Identities=37% Similarity=0.454 Sum_probs=149.2
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHh----hcceEEEccCCcccc-
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL----RGRIGFVGQEPKLFR- 589 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~l----R~~I~~V~Qd~~LF~- 589 (703)
..+++|+||+|++||.++|+||||||||||+++|+|+++|++|+|++||.|+.+.+...+ |+.|+||+|++.+|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 569999999999999999999999999999999999999999999999999999998887 889999999999998
Q ss_pred ccHHHHhccCCC-CCC----CHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCC
Q 005302 590 MDISSNISYGCT-QDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEA 664 (703)
Q Consensus 590 gTI~eNI~~g~~-~~~----~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEa 664 (703)
.|++|||.++.. ... ..+++.++++.+++.+++.+.|. +||||||||++|||||+++|+||+||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~---------~LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD---------ELSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChh---------hCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 599999998632 011 24567788888888777665553 6999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 665 TSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 665 TSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
||+||+.+.+.+++.+.++. -.+=.-|-+..
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~e 192 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDE 192 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99999999999999987653 24555566554
No 159
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.9e-37 Score=317.72 Aligned_cols=184 Identities=33% Similarity=0.503 Sum_probs=149.9
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC--ChHHhhcc
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV--DIKWLRGR 577 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i--~~~~lR~~ 577 (703)
|+++|++++|++ +++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +...+|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999973 4699999999999999999999999999999999999999999999999999764 34677889
Q ss_pred eEEEccCCcccc-ccHHHHhccCCC--CCCCH----HHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005302 578 IGFVGQEPKLFR-MDISSNISYGCT--QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (703)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~~~----e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (703)
++|++|++.+|. .|++||+.++.. ...+. +++.++++..++.+...+.| ..||||||||++|||
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~la~ 149 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP---------SELSGGQQQRVAIAR 149 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh---------hhcCHHHHHHHHHHH
Confidence 999999999886 699999987521 01222 33444555545444333221 479999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchhH
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLSL 695 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~~ 695 (703)
||+++|++|||||||++||+++...+.+.|+++ ...+=.-|-+..
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 198 (240)
T PRK09493 150 ALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGF 198 (240)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 999999999999999999999999999988754 234555566554
No 160
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-37 Score=320.35 Aligned_cols=189 Identities=33% Similarity=0.503 Sum_probs=155.3
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCCCChHH
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKEVDIKW 573 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-----~sG~I~idG~di~~i~~~~ 573 (703)
.|+++||+++|++ .++++|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999974 4699999999999999999999999999999999999984 7999999999999888888
Q ss_pred hhcceEEEccCCccc-cccHHHHhccCCC-C------CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHH
Q 005302 574 LRGRIGFVGQEPKLF-RMDISSNISYGCT-Q------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (703)
Q Consensus 574 lR~~I~~V~Qd~~LF-~gTI~eNI~~g~~-~------~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (703)
+|+.||||+|++.+| +.|++||+.++.. . ...++++.++++..++.+.+.. .+++.+ ..||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~~--~~LSgG~~qr 154 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RLDAPA--GKLSGGQQQR 154 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hhcCCc--ccCCHHHHHH
Confidence 999999999999754 6899999987521 0 1113456677777776543321 122222 4799999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
++|||||+++|++|+|||||++||+.+.+.+.+.|+++. -++-.-|-+..
T Consensus 155 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~ 207 (250)
T PRK14247 155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQ 207 (250)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999999999999999999999999999999998763 34455565543
No 161
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-37 Score=321.42 Aligned_cols=189 Identities=32% Similarity=0.443 Sum_probs=153.6
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----cceEEECCEeCC--CCCh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT-----NGQILIDGFPIK--EVDI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~-----sG~I~idG~di~--~i~~ 571 (703)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999974 46999999999999999999999999999999999999974 999999999997 4556
Q ss_pred HHhhcceEEEccCCccccc-cHHHHhccCCC-CC------CCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHH
Q 005302 572 KWLRGRIGFVGQEPKLFRM-DISSNISYGCT-QD------IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQK 643 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~------~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQk 643 (703)
..+|+.++||+|++.+|.+ |+.||+.++.. .. ..++++.++++..++.+++... .+.. ...||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LS~G~~ 155 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDR---LNDY--PSNLSGGQR 155 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhh---hccC--hhhCCHHHH
Confidence 6788999999999999976 99999987521 01 1124456666666665443211 1111 148999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 644 QRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
||++|||||+++|++|||||||++||+++.+.+.+.|+++. -++=.-|-+..
T Consensus 156 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~ 210 (253)
T PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQ 210 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHH
Confidence 99999999999999999999999999999999999998763 34555566554
No 162
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=9.3e-37 Score=311.97 Aligned_cols=190 Identities=34% Similarity=0.459 Sum_probs=148.2
Q ss_pred EEEEEEEEEcCCCC-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCh---HHhh
Q 005302 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI---KWLR 575 (703)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~---~~lR 575 (703)
|+++||+++|++.. +.++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999997431 1369999999999999999999999999999999999999999999999999988763 5788
Q ss_pred cceEEEccCC--ccc-cccHHHHhccCCC---CCCCHHHHHHHHHHhchHHHHHcCCCCcc-cccCC--CCCChHHHHHH
Q 005302 576 GRIGFVGQEP--KLF-RMDISSNISYGCT---QDIKQQDIEWAAKQAYAHDFIMSLPSGYE-TLVDD--DLLSGGQKQRI 646 (703)
Q Consensus 576 ~~I~~V~Qd~--~LF-~gTI~eNI~~g~~---~~~~~e~i~~aa~~A~l~d~I~~LP~Gyd-T~vGe--~~LSGGQkQRI 646 (703)
+.++||+|++ .++ ..|++|||.++.. ...++++..+++ ++.+..+ |.+ ..... .+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 9999999999 344 5899999976421 011122212111 2333333 222 22222 47999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHH
Q 005302 647 AIARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLY 696 (703)
Q Consensus 647 aLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~ 696 (703)
+|||||+.+|++|||||||++||+++.+.+.+.|+++. -++=+-|-+...
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 209 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVV 209 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 99999999999999999999999999999999997652 345666776543
No 163
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-37 Score=323.31 Aligned_cols=189 Identities=30% Similarity=0.429 Sum_probs=153.6
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC--CCChHHhhcc
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK--EVDIKWLRGR 577 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~--~i~~~~lR~~ 577 (703)
|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||+++. +.+...+|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999973 46999999999999999999999999999999999999999999999999985 3445678899
Q ss_pred eEEEccCCc--cccccHHHHhccCCC-CCCCH----HHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005302 578 IGFVGQEPK--LFRMDISSNISYGCT-QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (703)
Q Consensus 578 I~~V~Qd~~--LF~gTI~eNI~~g~~-~~~~~----e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (703)
|+||+|++. +|..|+.||+.++.. ...+. +++.++++..++.++... . -..||||||||++|||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~--~~~LSgG~~qrl~lar 149 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQ-------P--IQCLSHGQKKRVAIAG 149 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcC-------C--chhCCHHHHHHHHHHH
Confidence 999999985 678899999987421 11222 334556666666554321 1 1479999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHHHHhh
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLYVLIC 700 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~~~~~ 700 (703)
||+.+|++|||||||++||+++.+.+.+.|+++. .++-+-|-+....-+|
T Consensus 150 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~ 203 (271)
T PRK13638 150 ALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEIS 203 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999999999999999987652 3556667766543333
No 164
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=2.5e-34 Score=314.55 Aligned_cols=460 Identities=17% Similarity=0.204 Sum_probs=294.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHH----HHHHHHHHHHH
Q 005302 216 EIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDL----TSRLGSDCQQV 291 (703)
Q Consensus 216 d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi----~sR~~sdi~~i 291 (703)
|...+.......+.++.+...+..+..+....+.-+...++..-++++.++ ...||.-.+.++. =.|+++|++..
T Consensus 117 d~~~F~~~~~~~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k-~~~yYkis~~d~ridNPDQrltqDv~kf 195 (659)
T KOG0060|consen 117 DAELFKRLLFKYVLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFK-GFTYYKLSNLDDRIDNPDQRLTQDVEKF 195 (659)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhc-cceEEEecccccccCChHHHHhHHHHHH
Confidence 444444333333333333334444444444444333334444444444443 2233333333333 25888898887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005302 292 SRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAGL-M-LIYGLYQKKAAKLVQEITASANEVAQETFSL 369 (703)
Q Consensus 292 ~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~~~i-~-~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~g 369 (703)
.+.+.+....++...+..+....-++.+..+++.+.+..-.+...+ . .+.++..+...++.+. .+...-.-++...+
T Consensus 196 ~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qekl-EGdfRy~h~rlr~N 274 (659)
T KOG0060|consen 196 CRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKL-EGDFRYKHSRLRVN 274 (659)
T ss_pred HHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHh-hcchhhheeeeeec
Confidence 7776655555555555555555555666666666665554443222 2 2333444444433332 23334445677788
Q ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCcCHHHHHHHHH
Q 005302 370 MRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFI----MRGNITAEQLTKFIL 445 (703)
Q Consensus 370 i~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~iiil~~g~~lv----~~G~itvG~l~afi~ 445 (703)
.+.|--|+.+..|..+.....+.+.+......-+.-++..+.+++-.+..++..++-+.-+ ..+.+|...+...+.
T Consensus 275 aE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~ 354 (659)
T KOG0060|consen 275 AEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLIS 354 (659)
T ss_pred chhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHh
Confidence 8999999999988887777777666643333222222233333333333332222212222 234677777766554
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-------------Ccccc-------cc-ccccCCCCcE
Q 005302 446 YSEW----LIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPS-------------DQFMS-------KG-KKLQRLMGRI 500 (703)
Q Consensus 446 y~~~----~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e-------------~~~~~-------~~-~~~~~~~g~I 500 (703)
+... +.+.+..++....++....+...||.++.+.-.+ +..+. .+ .+..+.+..|
T Consensus 355 ~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i 434 (659)
T KOG0060|consen 355 NNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAI 434 (659)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceE
Confidence 4333 3444555566666666666777888777642110 00000 00 0111223569
Q ss_pred EEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEE
Q 005302 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF 580 (703)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~ 580 (703)
+|++|++.=|++ .+.+.+|+||+|+.|+.+-|.||||||||+|++.|.|+++..+|.+.--...-. +.+=|
T Consensus 435 ~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~--------~~lff 505 (659)
T KOG0060|consen 435 EFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP--------KDLFF 505 (659)
T ss_pred EeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC--------CceEE
Confidence 999999999975 467888899999999999999999999999999999999999999975332211 45899
Q ss_pred EccCCccccccHHHHhccCC------CCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC---CCCChHHHHHHHHHHH
Q 005302 581 VGQEPKLFRMDISSNISYGC------TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD---DLLSGGQKQRIAIARA 651 (703)
Q Consensus 581 V~Qd~~LF~gTI~eNI~~g~------~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe---~~LSGGQkQRIaLARA 651 (703)
|||.|+.=.||+||-+-|-+ .+.++||++.+.++.+++.+-.. ..+|+|+.+-- +.||+||+||+|.||-
T Consensus 506 lPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~-r~ggld~~~~~dW~dvLS~GEqQRLa~ARL 584 (659)
T KOG0060|consen 506 LPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLE-REGGLDQQVDWDWMDVLSPGEQQRLAFARL 584 (659)
T ss_pred ecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHH-HhCCCCchhhccHHhhcCHHHHHHHHHHHH
Confidence 99999999999999999862 12589999999999999966544 57899988764 5899999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcEE
Q 005302 652 ILRDPTILILDEATSALDAESEHNIKVATLSNGLLV 687 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~~ 687 (703)
+|.+|++-||||+|||+|.+.|.++-+-+++.+--.
T Consensus 585 fy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~ 620 (659)
T KOG0060|consen 585 FYHKPKFAILDECTSAVTEDVEGALYRKCREMGITF 620 (659)
T ss_pred HhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeE
Confidence 999999999999999999999999999999877543
No 165
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3.3e-37 Score=317.57 Aligned_cols=185 Identities=32% Similarity=0.542 Sum_probs=147.4
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++|++++|++ .++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.+... ++.++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999973 46999999999999999999999999999999999999999999999999998776544 46899
Q ss_pred EEccCCcc-ccccHHHHhccCCC-CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCC
Q 005302 580 FVGQEPKL-FRMDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD 655 (703)
Q Consensus 580 ~V~Qd~~L-F~gTI~eNI~~g~~-~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~ 655 (703)
|++|++.+ +..|++||+.++.. ...+.++..+ .+.+.+..+ |++..... ..||||||||++|||||+++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999988 67899999987532 1122222111 122333332 33333333 48999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 656 PTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
|++|||||||++||+++.+.+.+.|+++. -++=.-|-+..
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 195 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE 195 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh
Confidence 99999999999999999999999987652 34555566554
No 166
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-37 Score=326.02 Aligned_cols=188 Identities=29% Similarity=0.489 Sum_probs=158.9
Q ss_pred cEEEEEEEEEcCCCC---CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC-hHHh
Q 005302 499 RIDFVDVSFRYSSRE---MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD-IKWL 574 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~---~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~-~~~l 574 (703)
-|+++||+++|++.. .+++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997431 246999999999999999999999999999999999999999999999999997654 3567
Q ss_pred hcceEEEccCC--ccccccHHHHhccCCCC-CCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005302 575 RGRIGFVGQEP--KLFRMDISSNISYGCTQ-DIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (703)
Q Consensus 575 R~~I~~V~Qd~--~LF~gTI~eNI~~g~~~-~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (703)
|+.+|||+|++ .+|..|+.||+.++... ..+ ++++.++++..++.++..+.| ..||||||||++
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LS~G~~qrv~ 154 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP---------HLLSGGQKQRVA 154 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHH
Confidence 89999999998 47878999999986310 112 356777888888887766654 579999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 648 IARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 648 LARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
|||||+++|++||||||||+||+.+.+.+.+.|+++. -.+-+-|-+..
T Consensus 155 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~ 207 (280)
T PRK13633 155 IAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE 207 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH
Confidence 9999999999999999999999999999999998652 34666676664
No 167
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-37 Score=318.51 Aligned_cols=187 Identities=24% Similarity=0.360 Sum_probs=147.6
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHH-hhcc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW-LRGR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~-lR~~ 577 (703)
-|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+... +|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999973 46999999999999999999999999999999999999999999999999998887654 6788
Q ss_pred eEEEccCCccccc-cHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHhcCC
Q 005302 578 IGFVGQEPKLFRM-DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD-DLLSGGQKQRIAIARAILRD 655 (703)
Q Consensus 578 I~~V~Qd~~LF~g-TI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe-~~LSGGQkQRIaLARAL~r~ 655 (703)
++||+|++.+|.+ |++||+.++.. ..+.++..+.+ .+.+..++...++.-.. ..||||||||++|||||+++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~-----~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGF-FAERDQFQERI-----KWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhh-ccChhHHHHHH-----HHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999985 99999998532 12222222211 12222222112222122 57999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchh
Q 005302 656 PTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLS 694 (703)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~ 694 (703)
|+||+|||||++||+++.+.+.+.|+++. -++=.-|-+.
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN 198 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH
Confidence 99999999999999999999999987542 2334456554
No 168
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=5.2e-37 Score=322.43 Aligned_cols=185 Identities=25% Similarity=0.352 Sum_probs=150.3
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChH---Hhh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK---WLR 575 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~---~lR 575 (703)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999973 4699999999999999999999999999999999999999999999999999876643 457
Q ss_pred cceEEEccCCccccc-cHHHHhccCCC--CCCCH----HHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005302 576 GRIGFVGQEPKLFRM-DISSNISYGCT--QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (703)
Q Consensus 576 ~~I~~V~Qd~~LF~g-TI~eNI~~g~~--~~~~~----e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (703)
+.++||+|++.+|.+ |+.||+.++.. ...+. +++.++++..++.+.....| ..||||||||++|
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrv~l 154 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMP---------SELSGGMARRAAL 154 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHH
Confidence 889999999999986 99999986421 01222 23444455544433322211 4799999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
||||+++|++|||||||++||+++.+.+.+.|+++. -++=+-|-+..
T Consensus 155 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~ 206 (269)
T PRK11831 155 ARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPE 206 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH
Confidence 999999999999999999999999999999887652 35566676543
No 169
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-37 Score=319.09 Aligned_cols=185 Identities=29% Similarity=0.425 Sum_probs=156.2
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999974 46999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEccCCcc-ccccHHHHhccCCCCC-C----CHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 580 FVGQEPKL-FRMDISSNISYGCTQD-I----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 580 ~V~Qd~~L-F~gTI~eNI~~g~~~~-~----~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
||+|++.+ +..|++||+.++.... . .++++.++++..++.++..+.+ ..||||||||++|||||+
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGe~qrv~la~al~ 150 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDY---------PQLSGGEQQRVQLARVLA 150 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHHh
Confidence 99999988 7789999998863211 1 2345666777777655433322 579999999999999999
Q ss_pred ------CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHH
Q 005302 654 ------RDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLY 696 (703)
Q Consensus 654 ------r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~ 696 (703)
++|++|+|||||++||+++.+.+.+.|+++. -++-.-|-+...
T Consensus 151 ~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 204 (258)
T PRK13548 151 QLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLA 204 (258)
T ss_pred cccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 5999999999999999999999999887643 355666776543
No 170
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-37 Score=318.39 Aligned_cols=189 Identities=34% Similarity=0.502 Sum_probs=154.3
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCC--CC
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKE--VD 570 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-----~sG~I~idG~di~~--i~ 570 (703)
|.|+++||+++|++ .++++|+||+|++||.+||+||||||||||+++|+|+++| ++|+|.+||+++.+ .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999974 4699999999999999999999999999999999999863 69999999999875 45
Q ss_pred hHHhhcceEEEccCCccccccHHHHhccCCC-CC-----CCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHH
Q 005302 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCT-QD-----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQ 644 (703)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-----~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQ 644 (703)
...+|+.++||+|++.+|+.|+.|||.++.. .. ..++++.++++.+++.+.+..+ .+.. -..|||||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~--~~~LS~G~~q 153 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDR---LKKS--ALGLSGGQQQ 153 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHH---HhcC--CCCCCHHHHH
Confidence 5678999999999999999999999987521 01 1234566667777765444321 1111 1479999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchh
Q 005302 645 RIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLS 694 (703)
Q Consensus 645 RIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~ 694 (703)
|++|||||+.+|++|+|||||++||+++.+.+.+.|+++. -++=.-|-+.
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~ 206 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQ 206 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 9999999999999999999999999999999999998763 3444556654
No 171
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-37 Score=322.26 Aligned_cols=189 Identities=30% Similarity=0.431 Sum_probs=156.0
Q ss_pred CCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCC--C
Q 005302 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKE--V 569 (703)
Q Consensus 497 ~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-----p~sG~I~idG~di~~--i 569 (703)
...|+++||+|+|++ .++|+|+||+|++||.+||+||||||||||+++|+|+++ |++|+|.+||.++.+ .
T Consensus 18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 346999999999963 579999999999999999999999999999999999997 589999999999864 3
Q ss_pred ChHHhhcceEEEccCCccccccHHHHhccCCCC-C-----CCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChH
Q 005302 570 DIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQ-D-----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGG 641 (703)
Q Consensus 570 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~-----~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGG 641 (703)
+...+|+.|+||+|++.+|.+|++|||.++... . ..++++.++++..++.+++.. ..+. ..||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G 167 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-------DLHKSALTLSGG 167 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-------hhcCCcccCCHH
Confidence 456789999999999999999999999985210 1 113456667777777655432 2222 589999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 642 QKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 642 QkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. .++=.-|-+..
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 224 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQ 224 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 9999999999999999999999999999999999999988763 34555565543
No 172
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=4.3e-37 Score=311.91 Aligned_cols=180 Identities=33% Similarity=0.475 Sum_probs=151.9
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
++++||+++|+. +++|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+||+++.+.+ .+|+.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999962 468999999999999999999999999999999999999999999999997643 4688899
Q ss_pred EEccCCccccc-cHHHHhccCC-C----CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 580 FVGQEPKLFRM-DISSNISYGC-T----QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~-~----~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
||+|++.+|.+ |+.||+.++. + +..+++++.++++..++.+...+.|. .||||||||++|||||+
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LS~G~~qrl~laral~ 144 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE---------QLSGGQRQRVALARCLV 144 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc---------cCCHHHHHHHHHHHHHh
Confidence 99999999974 9999998642 1 01234567778888888777666553 69999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
++|+++||||||++||+++.+.+.+.|+++. -++=.-|-...
T Consensus 145 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~ 191 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSD 191 (213)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999999999999999999999999887652 34555566543
No 173
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=7.2e-37 Score=316.04 Aligned_cols=182 Identities=25% Similarity=0.390 Sum_probs=149.2
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHH-hhcce
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW-LRGRI 578 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~-lR~~I 578 (703)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||.++...+... .|+.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999974 46999999999999999999999999999999999999999999999999998877654 45679
Q ss_pred EEEccCCccccc-cHHHHhccCCCCC-------------CCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHH
Q 005302 579 GFVGQEPKLFRM-DISSNISYGCTQD-------------IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQ 642 (703)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~~~-------------~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQ 642 (703)
+|++|++.+|.+ |++||+.++...+ .+++++.++++..+ ++..... ..|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIG-----------LADEADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcC-----------CchhhcCChhhCCHHH
Confidence 999999999987 9999998863211 01223333333333 3332332 4799999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 643 kQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
|||++|||||+++|++|+||||||+||+++.+.+.+.|+++. -.+=.-|-+..
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~ 204 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEF 204 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 999999999999999999999999999999999999998764 34555576654
No 174
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.6e-37 Score=307.90 Aligned_cols=160 Identities=33% Similarity=0.509 Sum_probs=136.4
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC--CChHHhhcceEEEccCC--ccccc
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE--VDIKWLRGRIGFVGQEP--KLFRM 590 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~--i~~~~lR~~I~~V~Qd~--~LF~g 590 (703)
.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .....+|+.++||+|++ .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 569999999999999999999999999999999999999999999999999852 23456788999999998 58899
Q ss_pred cHHHHhccCCC-CCCCH----HHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCC
Q 005302 591 DISSNISYGCT-QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEAT 665 (703)
Q Consensus 591 TI~eNI~~g~~-~~~~~----e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaT 665 (703)
|++|||.++.. ...+. +++.++++..++.++....| ..||||||||++|||||+++|++|||||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~llllDEPt 155 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT---------HCLSGGEKKRVAIAGAVAMRPDVLLLDEPT 155 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999987521 01222 35666777777766544432 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 005302 666 SALDAESEHNIKVATLSN 683 (703)
Q Consensus 666 SaLD~~tE~~I~~al~~~ 683 (703)
++||+++.+.+.+.|++.
T Consensus 156 ~~LD~~~~~~~~~~l~~~ 173 (190)
T TIGR01166 156 AGLDPAGREQMLAILRRL 173 (190)
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 999999999999999875
No 175
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-37 Score=323.05 Aligned_cols=189 Identities=30% Similarity=0.448 Sum_probs=150.3
Q ss_pred EEEEEEEEEcCCCC--CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC----ChHH
Q 005302 500 IDFVDVSFRYSSRE--MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV----DIKW 573 (703)
Q Consensus 500 I~~~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i----~~~~ 573 (703)
|+++||+|+|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997531 13699999999999999999999999999999999999999999999999998764 3567
Q ss_pred hhcceEEEccCC--ccccccHHHHhccCCC-CCCCHHHH----HHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005302 574 LRGRIGFVGQEP--KLFRMDISSNISYGCT-QDIKQQDI----EWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI 646 (703)
Q Consensus 574 lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~e~i----~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRI 646 (703)
+|+.|+||+|++ .+|++|++|||.++.. ...+.++. .++++..++.+.. .+.. -..||||||||+
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~--~~~LSgG~~qrv 154 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESL------FEKN--PFELSGGQMRRV 154 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhh------hhCC--cccCCHHHHHHH
Confidence 889999999997 6899999999987521 12233333 3333344432110 1111 147999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHH
Q 005302 647 AIARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLY 696 (703)
Q Consensus 647 aLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~ 696 (703)
+|||||+++|++|||||||++||+++.+.+.+.|+++. -++-+-|-+...
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~ 208 (280)
T PRK13649 155 AIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDV 208 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHH
Confidence 99999999999999999999999999999999987652 345556766543
No 176
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-37 Score=327.03 Aligned_cols=187 Identities=28% Similarity=0.382 Sum_probs=150.0
Q ss_pred cEEEEEEEEEcCCCC--CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC--------
Q 005302 499 RIDFVDVSFRYSSRE--MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE-------- 568 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~-------- 568 (703)
.|+++||+|+|++.. ..++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 389999999997531 1369999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CChHHhhcceEEEccCC--ccccccHHHHhccCCC-CCCCH----HHHHHHHHHhchH-HHHHc
Q 005302 569 ----------------VDIKWLRGRIGFVGQEP--KLFRMDISSNISYGCT-QDIKQ----QDIEWAAKQAYAH-DFIMS 624 (703)
Q Consensus 569 ----------------i~~~~lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~----e~i~~aa~~A~l~-d~I~~ 624 (703)
.+...+|+.||||+|+| .+|..|+.|||.|+.. ...+. +++.++++..++. ++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 13467899999999985 7899999999998732 12233 3445555555553 22221
Q ss_pred CCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchh
Q 005302 625 LPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLS 694 (703)
Q Consensus 625 LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~ 694 (703)
-| ..||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. -.+-.-|-+.
T Consensus 162 ~~---------~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~ 226 (305)
T PRK13651 162 SP---------FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD 226 (305)
T ss_pred Ch---------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH
Confidence 11 4799999999999999999999999999999999999999999887652 3345556554
No 177
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.6e-37 Score=336.71 Aligned_cols=173 Identities=31% Similarity=0.461 Sum_probs=150.6
Q ss_pred CCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc--ceEEECCEeCCCCChHHh
Q 005302 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN--GQILIDGFPIKEVDIKWL 574 (703)
Q Consensus 497 ~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~s--G~I~idG~di~~i~~~~l 574 (703)
.+.|+++||+++|++ ..+|+|+||+|++||.+||+||||||||||+++|+|+++|++ |+|.+||.++.+.+. .
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~ 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--H 77 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--H
Confidence 467999999999974 469999999999999999999999999999999999999999 999999999987654 4
Q ss_pred hcceEEEccCCccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005302 575 RGRIGFVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (703)
Q Consensus 575 R~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (703)
++.||+|+|++.+|.. |++|||+|+.. ...+ ++++.++++..++.++..+.| ..||||||||++|
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~---------~~LSgGq~QRvaL 148 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP---------AQLSGGMQQRIAI 148 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh---------hhCCHHHHHHHHH
Confidence 6789999999999975 99999998632 1122 245677777777776665555 3799999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
||||+++|++|+||||||+||+.+...+.+.|+++
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l 183 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAAL 183 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988765
No 178
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-37 Score=322.95 Aligned_cols=186 Identities=31% Similarity=0.453 Sum_probs=154.3
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+++|++. ..++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999853 24699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCCc--cccccHHHHhccCCCC-CCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005302 579 GFVGQEPK--LFRMDISSNISYGCTQ-DIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (703)
Q Consensus 579 ~~V~Qd~~--LF~gTI~eNI~~g~~~-~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (703)
+||+|++. ++..|+++|+.++... ..+ ++++.++++..++.++.... ...||||||||++||||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~lara 156 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYE---------PNALSGGQKQRVAIAGV 156 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC---------cccCCHHHHHHHHHHHH
Confidence 99999984 5567899999886320 112 23455666666665543322 14799999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchh
Q 005302 652 ILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLS 694 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~ 694 (703)
|+++|++|||||||++||+.+.+.+.+.|+++. -.+-.-|-+.
T Consensus 157 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~ 204 (269)
T PRK13648 157 LALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS 204 (269)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch
Confidence 999999999999999999999999999987642 2344556544
No 179
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=316.69 Aligned_cols=188 Identities=31% Similarity=0.447 Sum_probs=153.6
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----cceEEECCEeCCC--CCh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT-----NGQILIDGFPIKE--VDI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~-----sG~I~idG~di~~--i~~ 571 (703)
.|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999974 46999999999999999999999999999999999999997 6999999999864 345
Q ss_pred HHhhcceEEEccCCccccccHHHHhccCCC-CCC-C----HHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHH
Q 005302 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QDI-K----QQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (703)
..+|+.++||+|++.+|+.|++|||.++.. ... . ++++.++++..++.+++.. .... ..||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKD-------NLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhh-------HhhCCcccCCHHHH
Confidence 678999999999999999999999997631 011 1 2334555555665544332 2222 48999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhHH
Q 005302 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSLY 696 (703)
Q Consensus 644 QRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~~ 696 (703)
||++|||||+++|++|||||||++||+++...+.+.|+++. ..+=.-|-+...
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~ 209 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQA 209 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 99999999999999999999999999999999999988762 344555665543
No 180
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.4e-37 Score=300.10 Aligned_cols=153 Identities=37% Similarity=0.609 Sum_probs=138.3
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
++++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 478999999974 36999999999999999999999999999999999999999999999999998765 67788999
Q ss_pred EEccCCccccc-cHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCE
Q 005302 580 FVGQEPKLFRM-DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTI 658 (703)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~I 658 (703)
||+|++.+|.+ |++||+. ||||||||++|||||+++|++
T Consensus 77 ~~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~i 116 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPEL 116 (173)
T ss_pred EEecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCE
Confidence 99999999986 9999984 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHH
Q 005302 659 LILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLY 696 (703)
Q Consensus 659 LILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~ 696 (703)
|+|||||++||+.+.+.+.+.|+++. .++=.-|-....
T Consensus 117 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~ 158 (173)
T cd03230 117 LILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEA 158 (173)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Confidence 99999999999999999999998763 245555765543
No 181
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-37 Score=321.12 Aligned_cols=189 Identities=33% Similarity=0.459 Sum_probs=156.1
Q ss_pred CCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCC--C
Q 005302 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKE--V 569 (703)
Q Consensus 497 ~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-----~sG~I~idG~di~~--i 569 (703)
.+.|+++||+|+|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999973 4699999999999999999999999999999999999984 89999999999875 3
Q ss_pred ChHHhhcceEEEccCCccccccHHHHhccCCC-CCC-----CHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChH
Q 005302 570 DIKWLRGRIGFVGQEPKLFRMDISSNISYGCT-QDI-----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGG 641 (703)
Q Consensus 570 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-----~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGG 641 (703)
+...+|+.++||+|++.+|++|++||+.++.. ... .++++.++++.+++.+++.. ..+. ..||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHH
Confidence 45678999999999999999999999987521 011 13456777777777655432 2222 589999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 642 QKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 642 QkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
||||++|||||+++|++|||||||++||+++.+.+.+.|+++. -++=.-|-+..
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~ 229 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQ 229 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998763 34444565543
No 182
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=316.87 Aligned_cols=194 Identities=24% Similarity=0.375 Sum_probs=153.0
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHh-hcc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL-RGR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~l-R~~ 577 (703)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999973 479999999999999999999999999999999999999999999999999988776554 456
Q ss_pred eEEEccCCccccc-cHHHHhccCCCCC--------------CCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCCh
Q 005302 578 IGFVGQEPKLFRM-DISSNISYGCTQD--------------IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSG 640 (703)
Q Consensus 578 I~~V~Qd~~LF~g-TI~eNI~~g~~~~--------------~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSG 640 (703)
++||+|++.+|.+ |++|||.++.... ..+++ .+ ....+.+.++.+ |++..... ..|||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~~--gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SE--ALDRAATWLERV--GLLEHANRQAGNLAY 156 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hH--HHHHHHHHHHhC--ChhhhhhCChhhCCH
Confidence 9999999999986 9999999752100 00000 00 011223334433 34333333 48999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhHHHHhh
Q 005302 641 GQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSLYVLIC 700 (703)
Q Consensus 641 GQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~~~~~~ 700 (703)
|||||++|||||+.+|++|||||||++||+++.+.+.+.|.++ ..++-+-|-+....-+|
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~ 221 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGIS 221 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999999999999999999999999998754 24667778776544433
No 183
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1e-36 Score=317.78 Aligned_cols=186 Identities=24% Similarity=0.393 Sum_probs=155.4
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 789999999974 46999999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEccCCc-cccccHHHHhccCCCC---------CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005302 580 FVGQEPK-LFRMDISSNISYGCTQ---------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (703)
Q Consensus 580 ~V~Qd~~-LF~gTI~eNI~~g~~~---------~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (703)
|++|++. .+..|++||+.++... ..+++++.++++..++.+..... -..||||||||++||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~la 149 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD---------MSTLSGGERQRVHVA 149 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC---------cccCCHHHHHHHHHH
Confidence 9999985 5678999999886310 01223556666666665443221 147999999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHHH
Q 005302 650 RAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLYV 697 (703)
Q Consensus 650 RAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~~ 697 (703)
|||+.+|+++||||||++||+++...+.+.|+++. -++=.-|-+...-
T Consensus 150 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (256)
T TIGR03873 150 RALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAA 201 (256)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 99999999999999999999999999999988662 3556667666543
No 184
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-37 Score=321.09 Aligned_cols=191 Identities=28% Similarity=0.421 Sum_probs=152.8
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCC--CCh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKE--VDI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-----p~sG~I~idG~di~~--i~~ 571 (703)
-|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 4999999999973 469999999999999999999999999999999999875 799999999999965 345
Q ss_pred HHhhcceEEEccCCccccccHHHHhccCCC--CC----CCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHH
Q 005302 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT--QD----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~--~~----~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (703)
..+|+.++||+|++.+|++|+.||+.++.. .. ..++++.++++..++.+.+... .+.. ..+||||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LSgGq~qr 172 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDR---LHSS--ALSLSGGQQQR 172 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHH---HhcC--cccCCHHHHHH
Confidence 578899999999999999999999987521 01 1123455556555553222110 1111 15899999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhHHH
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSLYV 697 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~~~ 697 (703)
++|||||+++|++|||||||++||+++.+.+.+.|+++. -++-+-|-+...-
T Consensus 173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~ 227 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQAL 227 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHH
Confidence 999999999999999999999999999999999998763 3455667665443
No 185
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-37 Score=309.82 Aligned_cols=157 Identities=28% Similarity=0.479 Sum_probs=137.8
Q ss_pred cEEEEEEEEEcCCC-CCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC---CCcceEEECCEeCCCCChHHh
Q 005302 499 RIDFVDVSFRYSSR-EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE---PTNGQILIDGFPIKEVDIKWL 574 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~-~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~---p~sG~I~idG~di~~i~~~~l 574 (703)
.+.++||+|.|+.. .+.++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++.+.+ ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999863 34679999999999999999999999999999999999999 89999999999998765 467
Q ss_pred hcceEEEccCCcccc-ccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 575 RGRIGFVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 575 R~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
|+.++||+|++.+|. .|++|||.++.. .. .+..+ ..||||||||++|||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~--~~-----------------------~~~~~--~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR--CK-----------------------GNEFV--RGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh--hc-----------------------cccch--hhCCHHHHHHHHHHHHHh
Confidence 889999999998887 599999987621 10 11111 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
++|++|||||||++||+++++.+.+.|+++
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~ 164 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTM 164 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999875
No 186
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=4.5e-37 Score=319.10 Aligned_cols=186 Identities=33% Similarity=0.484 Sum_probs=146.7
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC--------h
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD--------I 571 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~--------~ 571 (703)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 899999999974 46999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHhhcceEEEccCCcccc-ccHHHHhccCCC--CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHH
Q 005302 572 KWLRGRIGFVGQEPKLFR-MDISSNISYGCT--QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRI 646 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRI 646 (703)
..+|+.++||+|++.+|. .|++||+.++.. ...+.++..+. +++.++.+ |++..... ..||||||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHHH
Confidence 567889999999999986 799999986410 01222222111 12333332 22222222 58999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 647 AIARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 647 aLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
+|||||+++|++|||||||++||+++.+.+.+.|+++. -++-.-|-+..
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~ 206 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSF 206 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99999999999999999999999999999999887542 34455576554
No 187
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.7e-36 Score=310.90 Aligned_cols=183 Identities=25% Similarity=0.383 Sum_probs=147.7
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHH-hhcce
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW-LRGRI 578 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~-lR~~I 578 (703)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... +++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 578999999974 46999999999999999999999999999999999999999999999999998877654 46789
Q ss_pred EEEccCCccccc-cHHHHhccCCCC-CCCH-HHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhc
Q 005302 579 GFVGQEPKLFRM-DISSNISYGCTQ-DIKQ-QDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~~-~~~~-e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~ 653 (703)
+|++|++.+|.+ |++||+.++... ..+. +...++.+..+ +++..... ..||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 999999876321 1111 22233333322 11122222 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhH
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSL 695 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~ 695 (703)
++|++|||||||++||+.+.+.+.+.|++. .-++-+-|-+..
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 194 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDF 194 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHH
Confidence 999999999999999999999999998764 234566676654
No 188
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-36 Score=300.52 Aligned_cols=155 Identities=43% Similarity=0.647 Sum_probs=139.7
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC--hHHhhcc
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD--IKWLRGR 577 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~--~~~lR~~ 577 (703)
|+++|++++|++ .++++|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+||.++.+++ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 578999999974 46999999999999999999999999999999999999999999999999998876 5678899
Q ss_pred eEEEccCCcccc-ccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCC
Q 005302 578 IGFVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (703)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p 656 (703)
++|++|++.+|. .|++||+.++ ||||||||++|||||+++|
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 999999999986 5999999864 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 657 TILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
+++||||||++||+.+...+.+.|+++. -.+=+-|-...
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 163 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDE 163 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999999999999999999999887652 34555566543
No 189
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=321.26 Aligned_cols=191 Identities=30% Similarity=0.424 Sum_probs=157.1
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCC--CC
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKE--VD 570 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-----p~sG~I~idG~di~~--i~ 570 (703)
..|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++.+ .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35999999999974 469999999999999999999999999999999999997 689999999999864 34
Q ss_pred hHHhhcceEEEccCCccccccHHHHhccCCC----CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005302 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCT----QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI 646 (703)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~----~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRI 646 (703)
...+|+.++||+|++.+|.+|+.||+.++.. +...++++.++++..++.+.+... .+.. ...||||||||+
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~---~~~~--~~~LSgGe~qrv 189 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQ---LDSS--GLDLSGGQQQRL 189 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHH---HhCC--cccCCHHHHHHH
Confidence 5678899999999999999999999987521 011245677777777765444321 1111 147999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhHH
Q 005302 647 AIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSLY 696 (703)
Q Consensus 647 aLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~~ 696 (703)
+|||||+++|+|||||||||+||+++.+.+.+.|+++. -++-.-|-+...
T Consensus 190 ~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i 242 (285)
T PRK14254 190 CIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQA 242 (285)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 99999999999999999999999999999999998763 345566766543
No 190
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=319.23 Aligned_cols=186 Identities=26% Similarity=0.371 Sum_probs=158.6
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
..|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 36999999999974 469999999999999999999999999999999999999999999999999998888888889
Q ss_pred eEEEccCCcccc-ccHHHHhccCCCC---------CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005302 578 IGFVGQEPKLFR-MDISSNISYGCTQ---------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (703)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~~---------~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (703)
|+||+|++.+|. .|++||+.++... +.+++++.++++..++.++..+.| ..||||||||++
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrv~ 153 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV---------DTLSGGQRQRAW 153 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc---------ccCChHHHHHHH
Confidence 999999999875 6999999875210 112346777888878776544322 579999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 648 IARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 648 LARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
|||||+++|++|+|||||++||+++.+.+.+.|+++. -++=+-|-+..
T Consensus 154 laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~ 206 (265)
T PRK10253 154 IAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQ 206 (265)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999999999999999999999999999999987652 24556676654
No 191
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.7e-37 Score=308.52 Aligned_cols=169 Identities=26% Similarity=0.398 Sum_probs=146.3
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++||+++|++ ..+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .. +|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACH 76 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcE
Confidence 789999999974 469999999999999999999999999999999999999999999999998753 22 888999
Q ss_pred EEccCCccc-cccHHHHhccCCC-CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCC
Q 005302 580 FVGQEPKLF-RMDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT 657 (703)
Q Consensus 580 ~V~Qd~~LF-~gTI~eNI~~g~~-~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ 657 (703)
||+|++.++ +.|++||+.+... ...+++++.++++..++.++.. .|. ..||||||||++|||||+++|+
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~--------~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-LPF--------GYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-CCh--------hhcCHHHHHHHHHHHHHhcCCC
Confidence 999988775 6899999987532 1234567888888888876432 221 3799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 658 ILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
+|||||||++||+.+.+.+.+.|++.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~ 173 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRAH 173 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999865
No 192
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=316.25 Aligned_cols=187 Identities=35% Similarity=0.483 Sum_probs=152.2
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC--CC---CcceEEECCEeCCCC--Ch
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY--EP---TNGQILIDGFPIKEV--DI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly--~p---~sG~I~idG~di~~i--~~ 571 (703)
-|+++||+++|++ .++++|+||+|++||++||+||||||||||+++|+|++ .| ++|+|.+||+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999974 46999999999999999999999999999999999995 47 499999999998643 44
Q ss_pred HHhhcceEEEccCCccccccHHHHhccCCC--C----CCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHH
Q 005302 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT--Q----DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~--~----~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (703)
..+|+.++||+|++.+|+.|++||+.++.. . +..++++.++++..++.+++.. ..+. ..||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD-------RLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHH-------HHhcCcccCCHHHH
Confidence 577889999999999999999999986521 0 1112445566666666544432 2222 47999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 644 QRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
||++|||||+++|++|||||||++||+++.+.+.+.|++.. -.+=.-|-+..
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~ 209 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQ 209 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHH
Confidence 99999999999999999999999999999999999998763 34555566543
No 193
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-37 Score=317.86 Aligned_cols=189 Identities=32% Similarity=0.456 Sum_probs=151.6
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCC--CCh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKE--VDI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-----p~sG~I~idG~di~~--i~~ 571 (703)
.|+++||+|+|++ .++|+|+||+|++||.+||+|+||||||||+|+|+|+++ |++|+|.+||+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999974 469999999999999999999999999999999999997 489999999999864 345
Q ss_pred HHhhcceEEEccCCccccccHHHHhccCCC-CCC-----CHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHH
Q 005302 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QDI-----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-----~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (703)
..+|+.++||+|++.+|++|++||+.++.. ... .++++.++++..++++... ...+.. ..+||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~--~~~LS~Gq~qr 155 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK---DNLDRN--AQAFSGGQQQR 155 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH---HHhccC--hhhCCHHHHHH
Confidence 678889999999999999999999987521 011 1234555666666543111 111211 15899999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
++|||||+++|++|||||||++||+++.+.+.+.|+++. -++-.-|-+..
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~ 208 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQ 208 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHH
Confidence 999999999999999999999999999999999998752 34455566543
No 194
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-37 Score=335.22 Aligned_cols=172 Identities=28% Similarity=0.504 Sum_probs=146.8
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
..|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+... .|+.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999973 469999999999999999999999999999999999999999999999999987653 5789
Q ss_pred eEEEccCCccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005302 578 IGFVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (703)
Q Consensus 578 I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (703)
||||+|++.||.. |+.|||+|+.. ...+ .+++.++++..++.++..+.| ..||||||||++||||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~---------~~LSgGq~QRVaLARA 163 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP---------HQLSGGQRQRVALARS 163 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHH
Confidence 9999999999975 99999998732 1122 245566666667665544433 3799999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 652 ILRDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
|+++|++|+||||||+||..+.+.+.+.|+++
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 195 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDI 195 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999888766554
No 195
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-36 Score=316.31 Aligned_cols=180 Identities=27% Similarity=0.416 Sum_probs=148.0
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++|++++|++ .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999974 4699999999999999999999999999999999999999999999999998652 34699
Q ss_pred EEccCCcccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 580 FVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.+...+.| .+||||||||++|||||+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrl~laral~ 144 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYI---------WQLSGGQRQRVGIARALA 144 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999987 699999987521 0112 234556666666654433221 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhHH
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSLY 696 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~~ 696 (703)
++|++|||||||++||+++.+.+.+.|+++ .-++=.-|-....
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~ 192 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEA 192 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999999999999999999999999998765 2345566766543
No 196
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-36 Score=321.98 Aligned_cols=191 Identities=29% Similarity=0.430 Sum_probs=149.9
Q ss_pred CCcEEEEEEEEEcCCCC--CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC----C-
Q 005302 497 MGRIDFVDVSFRYSSRE--MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE----V- 569 (703)
Q Consensus 497 ~g~I~~~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~----i- 569 (703)
.+.|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 35799999999997531 1359999999999999999999999999999999999999999999999999852 2
Q ss_pred ChHHhhcceEEEccCC--ccccccHHHHhccCCC-CCCCHHHHH----HHHHHhchHHHHHcCCCCcccccCCCCCChHH
Q 005302 570 DIKWLRGRIGFVGQEP--KLFRMDISSNISYGCT-QDIKQQDIE----WAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQ 642 (703)
Q Consensus 570 ~~~~lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~e~i~----~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQ 642 (703)
+...+|+.|+||+|++ .+|..|++|||.++.. ...+.++.. ++++.. .+|.++... .-..|||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~-------~L~~~~~~~-~~~~LS~Gq 155 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLV-------QLPEDYVKR-SPFELSGGQ 155 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-------CCChhHhcC-ChhhCCHHH
Confidence 3567889999999998 5788999999987632 012333322 222222 233222110 015799999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 643 kQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
|||++|||||+++|++|||||||++||+++.+.+.+.|+++. -++-.-|-+..
T Consensus 156 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~ 213 (289)
T PRK13645 156 KRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQ 213 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 999999999999999999999999999999999998887542 35566677654
No 197
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=3.7e-37 Score=315.24 Aligned_cols=188 Identities=29% Similarity=0.419 Sum_probs=145.0
Q ss_pred EEEEEEEEEcCCCC-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC---CCcceEEECCEeCCCCChHHhh
Q 005302 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE---PTNGQILIDGFPIKEVDIKWLR 575 (703)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~---p~sG~I~idG~di~~i~~~~lR 575 (703)
++|+||+|+|++.+ .+++++|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999998641 2679999999999999999999999999999999999999 99999999999885 35688
Q ss_pred cceEEEccCCccccc-cHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC---CCCChHHHHHHHHHHH
Q 005302 576 GRIGFVGQEPKLFRM-DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD---DLLSGGQKQRIAIARA 651 (703)
Q Consensus 576 ~~I~~V~Qd~~LF~g-TI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe---~~LSGGQkQRIaLARA 651 (703)
+.++||+|++.+|++ |++|||.++.. ....+...+..+...++++ .++....+.+.+ ..||||||||++||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~--~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 157 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAI-LRLPRKSSDAIRKKRVEDV--LLRDLALTRIGGNLVKGISGGERRRVSIAVQ 157 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHH-hhcccccchHHHHHHHHHH--HHHhhcchhhhcccccCcCHHHHHHHHHHHH
Confidence 999999999999997 99999987521 0000000011111111220 112222223333 4899999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecch
Q 005302 652 ILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFL 693 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~ 693 (703)
|+++|++|||||||++||+.+.+.+.+.+++.. -++-.-|-.
T Consensus 158 l~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~ 203 (226)
T cd03234 158 LLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQP 203 (226)
T ss_pred HHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 999999999999999999999999999997642 344555654
No 198
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=317.49 Aligned_cols=188 Identities=34% Similarity=0.447 Sum_probs=152.4
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC--C---CcceEEECCEeCCC--CCh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE--P---TNGQILIDGFPIKE--VDI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~--p---~sG~I~idG~di~~--i~~ 571 (703)
-|+++||+|+|++ .++|+|+||+|++||.+||+||||||||||+++|+|+++ | ++|+|.+||+++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999974 469999999999999999999999999999999999997 3 69999999999864 445
Q ss_pred HHhhcceEEEccCCccccccHHHHhccCCC-CC-CC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHH
Q 005302 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QD-IK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (703)
..+|+.+|||+|++.+|.+|++||+.++.. .. .+ ++++.++++..++.+++... +++. -..||||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---l~~~--~~~LS~Gq~qr 163 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDR---LHTQ--ALSLSGGQQQR 163 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhh---hhCC--cccCCHHHHHH
Confidence 678899999999999999999999987631 01 12 23355566666665544321 1221 14799999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchh
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLS 694 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~ 694 (703)
++|||||+++|++|+|||||++||+++...+.+.|+++. -++-.-|-+.
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~ 215 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQ 215 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHH
Confidence 999999999999999999999999999999999998763 3344456544
No 199
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-37 Score=315.96 Aligned_cols=186 Identities=26% Similarity=0.429 Sum_probs=149.3
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHH-hhcc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW-LRGR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~-lR~~ 577 (703)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... +|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3889999999973 46999999999999999999999999999999999999999999999999998877544 5789
Q ss_pred eEEEccCCcccc-ccHHHHhccCCC--CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHh
Q 005302 578 IGFVGQEPKLFR-MDISSNISYGCT--QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAI 652 (703)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL 652 (703)
++||+|++.+|. .|+.||+.++.. ...+.++. ...+++.+..+ |++..... ..||||||||++|||||
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 999999999998 499999987521 01222211 12233444444 34433333 48999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchh
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLS 694 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~ 694 (703)
+++|++|||||||++||+++.+.+.+.++++ .-++-.-|-..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 198 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR 198 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH
Confidence 9999999999999999999999888777653 23455567654
No 200
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=9.2e-37 Score=319.84 Aligned_cols=188 Identities=32% Similarity=0.399 Sum_probs=148.2
Q ss_pred EEEEEEEEEcCCC------CCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHH
Q 005302 500 IDFVDVSFRYSSR------EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW 573 (703)
Q Consensus 500 I~~~nVsF~Y~~~------~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~ 573 (703)
|+++||+|+|++. .+.++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999642 1257999999999999999999999999999999999999999999999999998876543
Q ss_pred ---hhcceEEEccCCc--cc-cccHHHHhccCCC------CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChH
Q 005302 574 ---LRGRIGFVGQEPK--LF-RMDISSNISYGCT------QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGG 641 (703)
Q Consensus 574 ---lR~~I~~V~Qd~~--LF-~gTI~eNI~~g~~------~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGG 641 (703)
+|+.|+||+|++. ++ ..|++|||.+... ++..++++.++++..++.+... +.. ...||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~------~~~--~~~LSgG 154 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDA------DKL--PRQLSGG 154 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh------hCC--hhhCCHH
Confidence 6788999999973 44 4799999965311 0112344555555555432111 111 1479999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 642 QKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 642 QkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
||||++|||||+.+|++|||||||++||+++.+.+.+.|+++. -.+-.-|-+..
T Consensus 155 e~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~ 213 (265)
T TIGR02769 155 QLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRL 213 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 9999999999999999999999999999999999999987652 33455566543
No 201
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.8e-36 Score=316.13 Aligned_cols=188 Identities=30% Similarity=0.425 Sum_probs=152.5
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC--------
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV-------- 569 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i-------- 569 (703)
+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 56999999999974 4699999999999999999999999999999999999999999999999998642
Q ss_pred -----ChHHhhcceEEEccCCcccc-ccHHHHhccCCC--CCC----CHHHHHHHHHHhchHHHHHcCCCCcccccCCCC
Q 005302 570 -----DIKWLRGRIGFVGQEPKLFR-MDISSNISYGCT--QDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDL 637 (703)
Q Consensus 570 -----~~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~----~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~ 637 (703)
....+|+.++||+|++.+|. .|++||+.++.. ... .++++.++++..++.++.. +. .-..
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~------~~--~~~~ 152 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ------GK--YPVH 152 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh------hC--Cccc
Confidence 13567889999999999998 599999986410 011 2344556666666554431 11 1147
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHH
Q 005302 638 LSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLY 696 (703)
Q Consensus 638 LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~ 696 (703)
||||||||++|||||+++|++|||||||++||+++.+.+.+.|+++. -.+=.-|-+..-
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~ 215 (257)
T PRK10619 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA 215 (257)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999999887653 345556766543
No 202
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=317.52 Aligned_cols=191 Identities=29% Similarity=0.392 Sum_probs=156.0
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCC--CCCh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIK--EVDI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-----p~sG~I~idG~di~--~i~~ 571 (703)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+|+|+|++. |++|+|.+||.++. ..+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999974 469999999999999999999999999999999999986 48999999999985 3456
Q ss_pred HHhhcceEEEccCCccccccHHHHhccCCCC-C---CCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005302 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCTQ-D---IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~---~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (703)
..+|+.|+||+|++.+|+.|+.|||.++... . ..++++.++++.+++.+++... .+.. ..+||||||||++
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~--~~~LSgGq~qrv~ 161 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK---LKQS--GLSLSGGQQQRLC 161 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH---hcCC--cccCCHHHHHHHH
Confidence 6788999999999999999999999986320 1 1234566677777776655421 1111 1479999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhHHH
Q 005302 648 IARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSLYV 697 (703)
Q Consensus 648 LARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~~~ 697 (703)
|||||+++|++|||||||++||+++.+.+.+.|+++. -++=+-|-+....
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~ 214 (264)
T PRK14243 162 IARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAA 214 (264)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 9999999999999999999999999999999988764 3445556655433
No 203
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=317.36 Aligned_cols=190 Identities=32% Similarity=0.430 Sum_probs=155.7
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCC--CC
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKE--VD 570 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-----~sG~I~idG~di~~--i~ 570 (703)
+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+|+|+|+++| ++|+|.+||+++.+ .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 46999999999973 4699999999999999999999999999999999999986 48999999999864 45
Q ss_pred hHHhhcceEEEccCCccccccHHHHhccCCC-----CCCC-HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHH
Q 005302 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCT-----QDIK-QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQ 644 (703)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-----~~~~-~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQ 644 (703)
...+|+.|+||+|++.+|+.|++||+.++.. ++.+ ++++.++++.+++.+++... .++. ...|||||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~--~~~LS~G~~q 157 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK---LNKS--ALGLSGGQQQ 157 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH---hcCC--cccCCHHHHH
Confidence 5678899999999999999999999987521 0111 34567788888886655432 1221 1479999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 645 RIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 645 RIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++. -.+=.-|-+..
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 211 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQ 211 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999999999999999999999999999999999998763 33444465544
No 204
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.5e-36 Score=327.37 Aligned_cols=190 Identities=25% Similarity=0.350 Sum_probs=150.8
Q ss_pred cEEEEEEEEEcCCCC----------CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC
Q 005302 499 RIDFVDVSFRYSSRE----------MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE 568 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~----------~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~ 568 (703)
-|+++||+++|+.+. ..++++|+||+|++||++||||+||||||||+|+|+|+++|++|+|++||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999997421 2469999999999999999999999999999999999999999999999999998
Q ss_pred CChHH---hhcceEEEccCC--ccc-cccHHHHhccCC---CCCCCHH----HHHHHHHHhchHHHHHcCCCCcccccCC
Q 005302 569 VDIKW---LRGRIGFVGQEP--KLF-RMDISSNISYGC---TQDIKQQ----DIEWAAKQAYAHDFIMSLPSGYETLVDD 635 (703)
Q Consensus 569 i~~~~---lR~~I~~V~Qd~--~LF-~gTI~eNI~~g~---~~~~~~e----~i~~aa~~A~l~d~I~~LP~GydT~vGe 635 (703)
++..+ +|+.|+||+|++ .|| ..||.|||.+.- ..+.+.+ ++.++++.+++.+.. .+.. .
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~------~~~~--p 159 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNL------INRY--P 159 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH------hcCC--c
Confidence 87543 678999999998 477 589999997521 0023333 344455555552211 1111 1
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-----EEEEecchhHH
Q 005302 636 DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL-----LVKSLHFLSLY 696 (703)
Q Consensus 636 ~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-----~~~~~~~~~~~ 696 (703)
..||||||||++|||||+.+|++||+|||||+||+.+.+.|.+.|+++.. ++=.-|-+..-
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~ 225 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVV 225 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 47999999999999999999999999999999999999999999877643 35555766543
No 205
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-37 Score=315.51 Aligned_cols=182 Identities=30% Similarity=0.444 Sum_probs=154.5
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++|++|+|++ .++++|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|++||+++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 478999999974 469999999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEccCCccccc-cHHHHhccCCC-----CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 580 FVGQEPKLFRM-DISSNISYGCT-----QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~-----~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
||+|++.+|.+ |+.||+.++.. +...++++.++++..++++++...| ..||||||||++|||||+
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrl~laral~ 146 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP---------SQLSGGQQQRVAIARALV 146 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHHHh
Confidence 99999999975 99999986421 0122456777778888877766555 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
++|++|||||||++||+.+.+.+.+.|+++. ..+=.-|-+..
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~ 193 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEE 193 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 9999999999999999999999999887642 44555566543
No 206
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=315.05 Aligned_cols=189 Identities=32% Similarity=0.485 Sum_probs=154.3
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCC-CCChH
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIK-EVDIK 572 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-----~sG~I~idG~di~-~i~~~ 572 (703)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999973 4699999999999999999999999999999999999996 5999999999985 45667
Q ss_pred HhhcceEEEccCCccccccHHHHhccCCC-CCCC-----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005302 573 WLRGRIGFVGQEPKLFRMDISSNISYGCT-QDIK-----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI 646 (703)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~~-----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRI 646 (703)
.+|+.++||+|++.+|.+|++|||.++.. ...+ ++++.++++.+++++++.. .++.. ...||||||||+
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~--~~~LS~G~~qrv 154 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKD---RLKSH--AFGLSGGQQQRL 154 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhH---HhhcC--cccCCHHHHHHH
Confidence 88999999999999999999999987521 0111 2345566677776654431 11221 147999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 647 AIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 647 aLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
+|||||+++|++|||||||++||+.+.+.+.+.|+++. -.+=+-|-+..
T Consensus 155 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 206 (249)
T PRK14253 155 CIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQ 206 (249)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Confidence 99999999999999999999999999999999998763 34445565543
No 207
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.7e-36 Score=323.77 Aligned_cols=185 Identities=31% Similarity=0.441 Sum_probs=150.8
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++.+. ...+|+.|
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999974 4699999999999999999999999999999999999999999999999998764 35678999
Q ss_pred EEEccCCcccc-ccHHHHhccCCC-CCCCHHHH----HHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 579 GFVGQEPKLFR-MDISSNISYGCT-QDIKQQDI----EWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~~e~i----~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
|||+|++.+|. .|++||+.+... ...+.++. .++++..++ ++.+++.+ ..||||||||++|||||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-------~~~~~~~~--~~LSgG~~qrv~la~al 150 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ESKADVRV--ALLSGGMKRRLTLARAL 150 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-------hhHhcCch--hhCCHHHHHHHHHHHHH
Confidence 99999999985 799999985321 12333333 233333333 33344443 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchhHH
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLSLY 696 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~~~ 696 (703)
+++|++|||||||++||+++.+.+.+.|+++ .-++-+-|-+...
T Consensus 151 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~ 198 (303)
T TIGR01288 151 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEA 198 (303)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence 9999999999999999999999999999875 2356667776644
No 208
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-36 Score=314.27 Aligned_cols=190 Identities=28% Similarity=0.422 Sum_probs=153.6
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC--C---CcceEEECCEeCCCC--C
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE--P---TNGQILIDGFPIKEV--D 570 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~--p---~sG~I~idG~di~~i--~ 570 (703)
+.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++ | ++|+|.+||.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 56999999999973 469999999999999999999999999999999999986 4 699999999998653 4
Q ss_pred hHHhhcceEEEccCCcccc-ccHHHHhccCCC--CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHH
Q 005302 571 IKWLRGRIGFVGQEPKLFR-MDISSNISYGCT--QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQK 643 (703)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQk 643 (703)
...+|+.|+||+|++.+|. .|++|||.++.. ...+ ++++.++++..++.+++.... ++ .-..||||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~--~~~~LS~G~~ 154 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL---KS--NAMELSGGQQ 154 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHh---hC--CcCcCCHHHH
Confidence 5577899999999999998 699999986421 0111 244666777777765443211 11 1257999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc---EEEEecchhH
Q 005302 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL---LVKSLHFLSL 695 (703)
Q Consensus 644 QRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~---~~~~~~~~~~ 695 (703)
||++|||||+++|++|||||||++||+++.+.+.+.|+++.. ++=.-|-+..
T Consensus 155 qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~ 209 (252)
T PRK14256 155 QRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQ 209 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHH
Confidence 999999999999999999999999999999999999886633 4445565543
No 209
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-36 Score=320.76 Aligned_cols=188 Identities=29% Similarity=0.425 Sum_probs=149.6
Q ss_pred cEEEEEEEEEcCCCC--CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC----ChH
Q 005302 499 RIDFVDVSFRYSSRE--MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV----DIK 572 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i----~~~ 572 (703)
.|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997421 14699999999999999999999999999999999999999999999999998653 345
Q ss_pred HhhcceEEEccCC--ccccccHHHHhccCCC-CCCCHH----HHHHHHHHhchH-HHHHcCCCCcccccCCCCCChHHHH
Q 005302 573 WLRGRIGFVGQEP--KLFRMDISSNISYGCT-QDIKQQ----DIEWAAKQAYAH-DFIMSLPSGYETLVDDDLLSGGQKQ 644 (703)
Q Consensus 573 ~lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~e----~i~~aa~~A~l~-d~I~~LP~GydT~vGe~~LSGGQkQ 644 (703)
..|+.|+||+|++ .+|..|+.|||.++.. ...+.+ ++.++++..++. ++.. +. -..|||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-------~~--~~~LSgGq~q 152 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLIS-------KS--PFELSGGQMR 152 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhh-------CC--cccCCHHHHH
Confidence 6788999999998 6888999999987521 122222 334444444442 2211 11 1479999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 645 RIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 645 RIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
|++|||||+.+|++|||||||++||+++.+.+.+.|+++. -++-.-|-+..
T Consensus 153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~ 207 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDD 207 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 9999999999999999999999999999999999988753 34555676553
No 210
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=315.20 Aligned_cols=187 Identities=30% Similarity=0.446 Sum_probs=153.2
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCCC--Ch
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKEV--DI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-----~sG~I~idG~di~~i--~~ 571 (703)
-|+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999973 4699999999999999999999999999999999999984 899999999998753 34
Q ss_pred HHhhcceEEEccCCccccccHHHHhccCCC-CC-----CCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHH
Q 005302 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QD-----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-----~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (703)
..+|+.++||+|++.+|+.|++||+.++.. .. ..++++.++++..++++.+.. .... ..||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHH
Confidence 567889999999999999999999987521 01 123345667777777654432 1222 48999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 644 QRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
||++|||||+++|++|||||||++||+.+...+.+.|+++. -++=.-|-+..
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~ 207 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQ 207 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 99999999999999999999999999999999999998753 33445565543
No 211
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=315.50 Aligned_cols=187 Identities=34% Similarity=0.480 Sum_probs=152.1
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC---CCC--CcceEEECCEeCCCC--Ch
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL---YEP--TNGQILIDGFPIKEV--DI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl---y~p--~sG~I~idG~di~~i--~~ 571 (703)
.|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+|+|+|+ ++| ++|+|.+||+++.+. +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999974 4699999999999999999999999999999999997 454 589999999999764 35
Q ss_pred HHhhcceEEEccCCccccccHHHHhccCCC-CC-----CCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHH
Q 005302 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QD-----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-----~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (703)
..+|+.|+||+|++.+|.+|+.|||.++.. .. ..++++.++++..++.+++.. .... ..||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD-------KLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhh-------hhhCCcccCCHHHH
Confidence 678899999999999999999999987521 01 122345666666666544432 2223 47999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 644 QRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
||++|||||+++|++|||||||++||+++.+.+.+.|+++. ..+-.-|-+..
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~ 207 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQ 207 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 99999999999999999999999999999999999998763 34445565553
No 212
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-36 Score=310.85 Aligned_cols=180 Identities=32% Similarity=0.512 Sum_probs=152.7
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++||+++|++ .+ .|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 789999999973 22 38999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEccCCccccc-cHHHHhccCCCC-----CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 580 FVGQEPKLFRM-DISSNISYGCTQ-----DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~~-----~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
||+|++.+|.+ |+.|||.++... +.+++++.++++..++.+.+.+.| ..||||||||++||||++
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP---------GQLSGGQRQRVALARCLV 145 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc---------ccCCHHHHHHHHHHHHHh
Confidence 99999999985 999999875211 123566888899999888777665 369999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
++|++|||||||++||+++.+.+.+.|+++. -++=.-|-...
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~ 192 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLED 192 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 9999999999999999999999998887642 34556666554
No 213
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=316.56 Aligned_cols=186 Identities=31% Similarity=0.422 Sum_probs=151.1
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCCC--Ch
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKEV--DI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-----~sG~I~idG~di~~i--~~ 571 (703)
-|+++||+|+|++ .++|+|+||+|++||.++|+||||||||||+|+|+|+++| ++|+|.+||+++.+. +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999973 4699999999999999999999999999999999999863 489999999999876 45
Q ss_pred HHhhcceEEEccCCccccccHHHHhccCCCC-CC-C----HHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHH
Q 005302 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCTQ-DI-K----QQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~~-~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (703)
...|+.|+||+|++.+|++|++|||.++... +. + ++++.++++..++.+++. +..+. ..||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHH
Confidence 6778899999999999999999999986310 11 1 234555555555543332 22333 48999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchh
Q 005302 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLS 694 (703)
Q Consensus 644 QRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~ 694 (703)
||++|||||+.+|++|||||||++||+++.+.+.+.|+++. -++=.-|-..
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~ 209 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQ 209 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHH
Confidence 99999999999999999999999999999999999998763 3334445443
No 214
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-36 Score=297.90 Aligned_cols=153 Identities=58% Similarity=0.855 Sum_probs=139.7
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++|++++|++. ..++++|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999854 247999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEE
Q 005302 580 FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTIL 659 (703)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~IL 659 (703)
|++|++.+|+.|+.||+ ||||||||++|||||+++|++|
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhCCc---EEEEecchh
Q 005302 660 ILDEATSALDAESEHNIKVATLSNGL---LVKSLHFLS 694 (703)
Q Consensus 660 ILDEaTSaLD~~tE~~I~~al~~~~~---~~~~~~~~~ 694 (703)
+|||||++||+++.+.+.+.|+++.. ++=+-|-..
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~ 156 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALAKGKTVIVIAHRLS 156 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence 99999999999999999999987643 333445544
No 215
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.6e-37 Score=305.85 Aligned_cols=176 Identities=35% Similarity=0.460 Sum_probs=143.4
Q ss_pred cEEEEEEEEEcCCCC-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC-hHHhhc
Q 005302 499 RIDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD-IKWLRG 576 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~-~~~lR~ 576 (703)
.++++|+++.|+.+. ..++++||||+|.+||+++||||||||||||.++|+|+.+|++|+|.+||.++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999998531 125999999999999999999999999999999999999999999999998876543 447889
Q ss_pred ceEEEccCCcc-cc--ccHHHHhc----cCCCCCCCHHHHHHHHHHhchHHHHH-cCCCCcccccCCCCCChHHHHHHHH
Q 005302 577 RIGFVGQEPKL-FR--MDISSNIS----YGCTQDIKQQDIEWAAKQAYAHDFIM-SLPSGYETLVDDDLLSGGQKQRIAI 648 (703)
Q Consensus 577 ~I~~V~Qd~~L-F~--gTI~eNI~----~g~~~~~~~e~i~~aa~~A~l~d~I~-~LP~GydT~vGe~~LSGGQkQRIaL 648 (703)
.+-+|+|||+- ++ .||.+=|. ...- +-.++++.++++.+|+.+... +.| ..|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~-~~~~~~i~~~L~~VgL~~~~l~R~P---------~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGL-SKSQQRIAELLDQVGLPPSFLDRRP---------HELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCc-cHHHHHHHHHHHHcCCCHHHHhcCc---------hhcChhHHHHHHH
Confidence 99999999974 22 45555443 2111 224566888888888866433 333 3599999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
||||.-+|++||+|||||+||+-..++|.+.+.++.
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~ 188 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELK 188 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998876543
No 216
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.9e-36 Score=312.28 Aligned_cols=181 Identities=33% Similarity=0.478 Sum_probs=149.4
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||.++.+.+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 578999999974 469999999999999999999999999999999999999999999999999986553 478899
Q ss_pred EEccCCccccc-cHHHHhccCCCC-CCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 580 FVGQEPKLFRM-DISSNISYGCTQ-DIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~~-~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
||+|++.+|.+ |++||+.++... ..+ ++++.++++..++.++..+.+ .+|||||+||++|||||+
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP---------NQLSGGQRQRVALARALA 146 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 99999999985 999999876320 111 234444555555544433222 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchh
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLS 694 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~ 694 (703)
++|++++|||||++||+++++.+.+.|++. .-++=+-|-..
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~ 192 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE 192 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 999999999999999999999999999864 23566667665
No 217
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=316.56 Aligned_cols=190 Identities=32% Similarity=0.442 Sum_probs=153.3
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCCC--Ch
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKEV--DI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-----~sG~I~idG~di~~i--~~ 571 (703)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++| ++|+|.+||.++.+. +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999973 4699999999999999999999999999999999999985 899999999998653 34
Q ss_pred HHhhcceEEEccCCccccccHHHHhccCCC-CCCCH----HHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005302 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI 646 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~~~----e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRI 646 (703)
..+|+.++||+|++.+|+.|++||+.++.. ...+. +++.++++.+++.+++. ..+++.+ ..||||||||+
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~~--~~LSgG~~qrv 163 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLKSPA--LSLSGGQQQRL 163 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhcCCh--hhCCHHHHHHH
Confidence 567889999999999999999999987521 01222 34555666666543221 1122221 47999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhHH
Q 005302 647 AIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSLY 696 (703)
Q Consensus 647 aLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~~ 696 (703)
+|||||+++|++|+|||||++||+++.+.+.+.|+++. -.+-.-|-+...
T Consensus 164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~ 216 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQA 216 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHH
Confidence 99999999999999999999999999999999998753 345556766543
No 218
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.8e-36 Score=295.89 Aligned_cols=148 Identities=34% Similarity=0.481 Sum_probs=132.5
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 5789999999743 46999999999999999999999999999999999999999999999883 6899
Q ss_pred EEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEE
Q 005302 580 FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTIL 659 (703)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~IL 659 (703)
||+|++.++++|++|||.++ ....||||||||++|||||+++|++|
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~l 113 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFV 113 (166)
T ss_pred EECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999864 12579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhCCc-EEEEecchh
Q 005302 660 ILDEATSALDAESEHNIKVATLSNGL-LVKSLHFLS 694 (703)
Q Consensus 660 ILDEaTSaLD~~tE~~I~~al~~~~~-~~~~~~~~~ 694 (703)
||||||++||+++.+.+.+.+++.+. ++=.-|-..
T Consensus 114 llDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~ 149 (166)
T cd03223 114 FLDEATSALDEESEDRLYQLLKELGITVISVGHRPS 149 (166)
T ss_pred EEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChh
Confidence 99999999999999999999998742 344445544
No 219
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.3e-36 Score=323.14 Aligned_cols=185 Identities=30% Similarity=0.422 Sum_probs=152.9
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.|+...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999973 46999999999999999999999999999999999999999999999999998754 4578999
Q ss_pred EEEccCCcccc-ccHHHHhccCCC-CCCCHHH----HHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 579 GFVGQEPKLFR-MDISSNISYGCT-QDIKQQD----IEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~~e~----i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
|||+|++.+|. .|++||+.++.. ...+.++ +.++++..+ ++...++.+ .+||||||||++|||||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~--~~LS~G~~qrl~la~aL 153 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAK-------LENKADAKV--GELSGGMKRRLTLARAL 153 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CchHhcCch--hhCCHHHHHHHHHHHHH
Confidence 99999999986 799999986432 1223332 233333333 334455554 37999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHH
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLY 696 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~ 696 (703)
+.+|++|||||||++||+.+.+.+.+.|+++. -.+=+-|.+..-
T Consensus 154 ~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~ 201 (306)
T PRK13537 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEA 201 (306)
T ss_pred hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence 99999999999999999999999999998753 356667877643
No 220
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-36 Score=312.86 Aligned_cols=188 Identities=33% Similarity=0.513 Sum_probs=152.9
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCCC--Ch
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKEV--DI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-----~sG~I~idG~di~~i--~~ 571 (703)
.|+++||+++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.+||.++.+. +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4899999999973 4699999999999999999999999999999999999986 799999999999653 34
Q ss_pred HHhhcceEEEccCCccccccHHHHhccCCC-CCC-C----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHH
Q 005302 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QDI-K----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (703)
..+|+.++||+|++.+|+.|++||+.++.. ... + .+++.++++.+++.+.+.... +. .-..||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~--~~~~LS~G~~qr 155 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDL---KK--SALKLSGGQQQR 155 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHh---hC--CcccCCHHHHHH
Confidence 567889999999999999999999997521 011 1 244566777777654433211 11 124799999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchh
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLS 694 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~ 694 (703)
++|||||+++|++||||||||+||+.+.+.+.+.|++.. .++=.-|-+.
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~ 207 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQ 207 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHH
Confidence 999999999999999999999999999999999998753 3344446554
No 221
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.8e-36 Score=311.56 Aligned_cols=188 Identities=24% Similarity=0.289 Sum_probs=148.0
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCcceEEECCEeCCCCChHHh-hc
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL--YEPTNGQILIDGFPIKEVDIKWL-RG 576 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl--y~p~sG~I~idG~di~~i~~~~l-R~ 576 (703)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.+||.++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999973 4699999999999999999999999999999999999 47999999999999988877665 45
Q ss_pred ceEEEccCCccccc-cHHHHhccCCCC--------CCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHH
Q 005302 577 RIGFVGQEPKLFRM-DISSNISYGCTQ--------DIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQK 643 (703)
Q Consensus 577 ~I~~V~Qd~~LF~g-TI~eNI~~g~~~--------~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQk 643 (703)
.++||+|++.+|.+ |++||+.+.... ..+ ++++.++++..++.+.. .+..++ ..||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~-~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN-EGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc-cCcCHHHH
Confidence 59999999999886 799999764210 011 12344444444443211 122221 24999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHHH
Q 005302 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLYV 697 (703)
Q Consensus 644 QRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~~ 697 (703)
||++|||||+++|++|||||||++||+++.+.+.+.|+++. -++=.-|-+...-
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~ 208 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLN 208 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHH
Confidence 99999999999999999999999999999999999998763 3455667665543
No 222
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=315.28 Aligned_cols=189 Identities=34% Similarity=0.446 Sum_probs=152.0
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCC--CCh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKE--VDI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-----~sG~I~idG~di~~--i~~ 571 (703)
.|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+|+|+|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999974 3699999999999999999999999999999999999975 79999999999853 455
Q ss_pred HHhhcceEEEccCCcccc-ccHHHHhccCCC--C----CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHH
Q 005302 572 KWLRGRIGFVGQEPKLFR-MDISSNISYGCT--Q----DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQ 644 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~----~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQ 644 (703)
..+|+.++||+|++.+|. .|++||+.++.. . ...++++.++++..++.+++... .+.. -.+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LS~G~~q 155 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDR---LDKP--GGGLSGGQQQ 155 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhH---hhCC--cccCCHHHHH
Confidence 678999999999999998 599999986421 0 11123455666666664433211 1111 1479999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 645 RIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 645 RIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
|++|||||+++|++|||||||++||+.+...+.+.|+++. -++-.-|-+..
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~ 209 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQ 209 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 9999999999999999999999999999999999988653 34555565543
No 223
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-36 Score=317.39 Aligned_cols=185 Identities=31% Similarity=0.488 Sum_probs=151.3
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC--CChHHhhcc
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE--VDIKWLRGR 577 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~--i~~~~lR~~ 577 (703)
|+++||+++|++. .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 6899999999742 469999999999999999999999999999999999999999999999999852 234568899
Q ss_pred eEEEccCC--ccccccHHHHhccCCCC-CCCH----HHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005302 578 IGFVGQEP--KLFRMDISSNISYGCTQ-DIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (703)
Q Consensus 578 I~~V~Qd~--~LF~gTI~eNI~~g~~~-~~~~----e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (703)
|+||+|++ .+|..|+.|||.++... ..+. +++.++++..++.++... . ...||||||||++|||
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-------~--~~~LS~Gq~qrv~lar 150 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENK-------P--PHHLSGGQKKRVAIAG 150 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcC-------C--hhhCCHHHHHHHHHHH
Confidence 99999997 57899999999875310 1222 345556666666433222 1 1479999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
||+++|++|||||||++||+.+.+.+.+.|+++. -++-.-|-+..
T Consensus 151 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~ 199 (275)
T PRK13639 151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL 199 (275)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 9999999999999999999999999999988653 34566676553
No 224
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-36 Score=332.62 Aligned_cols=173 Identities=36% Similarity=0.501 Sum_probs=146.1
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHh----hcceEEEccCCcccc-c
Q 005302 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL----RGRIGFVGQEPKLFR-M 590 (703)
Q Consensus 516 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~l----R~~I~~V~Qd~~LF~-g 590 (703)
.+|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+||.|+.+.+...+ |+.|+||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 38999999999999999999999999999999999999999999999999998876553 468999999999997 5
Q ss_pred cHHHHhccCCC-CC----CCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCC
Q 005302 591 DISSNISYGCT-QD----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEAT 665 (703)
Q Consensus 591 TI~eNI~~g~~-~~----~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaT 665 (703)
|++|||.++.. .. ..++++.++++..++.++..+.| .+||||||||++|||||+.+|++|||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~---------~~LSgGq~QRv~LArAL~~~P~iLLLDEPt 192 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP---------DELSGGMRQRVGLARALAINPDILLMDEAF 192 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc---------ccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 99999997521 01 12355677778878776665554 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCC-----cEEEEecchhHHH
Q 005302 666 SALDAESEHNIKVATLSNG-----LLVKSLHFLSLYV 697 (703)
Q Consensus 666 SaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~~ 697 (703)
|+||+.+.+.+.+.|+++. -.+-.-|-+....
T Consensus 193 s~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~ 229 (400)
T PRK10070 193 SALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAM 229 (400)
T ss_pred ccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHH
Confidence 9999999999999997652 3566677765443
No 225
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-36 Score=315.34 Aligned_cols=187 Identities=27% Similarity=0.423 Sum_probs=151.5
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCCCC-hH
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKEVD-IK 572 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-----~sG~I~idG~di~~i~-~~ 572 (703)
-++++||+++|++ .++|+|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999973 4799999999999999999999999999999999999986 6999999999998763 45
Q ss_pred HhhcceEEEccCCccccccHHHHhccCCC--CCCCHHHHH----HHHHHhchHHHHHcCCCCcccccCC--CCCChHHHH
Q 005302 573 WLRGRIGFVGQEPKLFRMDISSNISYGCT--QDIKQQDIE----WAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQ 644 (703)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~--~~~~~e~i~----~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQ 644 (703)
.+|+.++||+|++.+|+.|++|||.++.. ...++++.. ++++..++.+ .+++.+.. .+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWD-------AVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCc-------hhhhHhhCCcccCCHHHHH
Confidence 77899999999999999999999997521 113444433 2333333322 22233333 489999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 645 RIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 645 RIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++. -++=.-|-+..
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~ 224 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQ 224 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999999999999999999999999999999999988763 34445566554
No 226
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-36 Score=316.23 Aligned_cols=187 Identities=32% Similarity=0.458 Sum_probs=149.9
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCC--CCh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKE--VDI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-----p~sG~I~idG~di~~--i~~ 571 (703)
-|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999974 469999999999999999999999999999999999997 699999999999853 455
Q ss_pred HHhhcceEEEccCCccccccHHHHhccCCC-CCCCH-----HHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHH
Q 005302 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QDIKQ-----QDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~~~-----e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (703)
..+|+.++||+|++.+|.+|+.|||.++.. .+.++ +++.++++..++.+.+. ..... ..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCHHHH
Confidence 678899999999999999999999987521 12221 22333444443322222 22222 48999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 644 QRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
||++|||||+++|++|||||||++||+++.+.+.+.|+++. -++=.-|-+..
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~ 228 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQ 228 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHH
Confidence 99999999999999999999999999999999999988764 23444565554
No 227
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=314.85 Aligned_cols=185 Identities=31% Similarity=0.449 Sum_probs=150.2
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCCCC--hH
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKEVD--IK 572 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-----p~sG~I~idG~di~~i~--~~ 572 (703)
-+++||+|+|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++ |++|+|.++|+++.+.+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999973 479999999999999999999999999999999999986 47999999999987643 34
Q ss_pred HhhcceEEEccCCccccccHHHHhccCCC-CC------CCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHH
Q 005302 573 WLRGRIGFVGQEPKLFRMDISSNISYGCT-QD------IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (703)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~------~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (703)
.+|+.++||+|++.+|.+|+.|||.++.. .+ ..++++.++++..++.+++. +.++. ..||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 67889999999999999999999987521 01 12344556667666654432 12222 47999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchh
Q 005302 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLS 694 (703)
Q Consensus 644 QRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~ 694 (703)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++. -++=.-|-+.
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~ 209 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMK 209 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 99999999999999999999999999999999999998653 2444556554
No 228
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-36 Score=314.97 Aligned_cols=191 Identities=27% Similarity=0.379 Sum_probs=156.3
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCC--CCh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKE--VDI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-----~sG~I~idG~di~~--i~~ 571 (703)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.+||+++.+ .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 6999999999974 4699999999999999999999999999999999999864 69999999999864 345
Q ss_pred HHhhcceEEEccCCccccccHHHHhccCCCC----CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005302 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCTQ----DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~----~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (703)
..+|+.|+||+|++.+|++|+.|||.++... ...++++.++++.+++.+++... .+.. -..||||||||++
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~--~~~LSgGq~qrv~ 171 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDK---LKEK--GTALSGGQQQRLC 171 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHH---hcCC--cccCCHHHHHHHH
Confidence 5778999999999999999999999886310 11234566777777776555321 1111 1479999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhHHH
Q 005302 648 IARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSLYV 697 (703)
Q Consensus 648 LARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~~~ 697 (703)
|||||+++|++|||||||++||+++...+.+.|++.. -++=.-|-+....
T Consensus 172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~ 224 (274)
T PRK14265 172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQAS 224 (274)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 9999999999999999999999999999999998763 3445556655443
No 229
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-36 Score=312.86 Aligned_cols=189 Identities=32% Similarity=0.466 Sum_probs=151.2
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC--C---CcceEEECCEeCCC--CCh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE--P---TNGQILIDGFPIKE--VDI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~--p---~sG~I~idG~di~~--i~~ 571 (703)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999973 469999999999999999999999999999999999975 5 59999999999864 345
Q ss_pred HHhhcceEEEccCCccccccHHHHhccCCC-CCC-C----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHH
Q 005302 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QDI-K----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (703)
..+++.++||+|++.+|.+|++||+.++.. ... . ++++.++++.+++.+.+... .+.. ...||||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~---~~~~--~~~LS~Gq~qr 156 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDH---LHES--ALSLSGGQQQR 156 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhH---HhcC--cccCCHHHHHH
Confidence 677889999999999999999999987521 011 1 23445555666554333211 1111 15899999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
++|||||+++|++|||||||++||+++.+.+.+.|+++. -++-.-|-...
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~ 209 (252)
T PRK14255 157 VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQ 209 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHH
Confidence 999999999999999999999999999999999987663 45556676554
No 230
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-36 Score=311.35 Aligned_cols=188 Identities=32% Similarity=0.473 Sum_probs=154.6
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCC--CCh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKE--VDI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-----p~sG~I~idG~di~~--i~~ 571 (703)
.|+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||+++.. .+.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999973 469999999999999999999999999999999999975 489999999999875 346
Q ss_pred HHhhcceEEEccCCccccccHHHHhccCCC-CC-CC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHH
Q 005302 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QD-IK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (703)
..+|+.++||+|++.+|.+|++|||.++.. .+ .+ ++++.++++.+++.+++..+ .++. -..||||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~--~~~LS~Gq~qr 154 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK---LDKS--ALGLSGGQQQR 154 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH---HhCC--cccCCHHHHHH
Confidence 678999999999999999999999987521 11 12 24466677888887766432 2222 24799999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchh
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLS 694 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~ 694 (703)
++|||||+++|++|+|||||++||+.+.+.+.+.|+++. -.+=+-|-+.
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~ 206 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQ 206 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 999999999999999999999999999999999998653 2444555544
No 231
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-36 Score=317.89 Aligned_cols=190 Identities=32% Similarity=0.415 Sum_probs=152.3
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCCC--Ch
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKEV--DI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-----p~sG~I~idG~di~~i--~~ 571 (703)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 39 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 39 HVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred EEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 5899999999974 469999999999999999999999999999999999865 4999999999998653 33
Q ss_pred HHhhcceEEEccCCccccccHHHHhccCCC-CCC-C----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHH
Q 005302 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QDI-K----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (703)
..+|+.|+||+|++.+|.+|+.|||.++.. ... + ++++.++++..++.+.+.. ..+.. -..||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~~~~--~~~LSgGq~qr 190 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD---RLDKN--ALGLSGGQQQR 190 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhh---HhhCC--hhhCCHHHHHH
Confidence 467889999999999999999999997521 011 1 2345566666665433221 12221 14799999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc---EEEEecchhHH
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL---LVKSLHFLSLY 696 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~---~~~~~~~~~~~ 696 (703)
++|||||+++|++|||||||++||+++.+.+.+.|++... ++=.-|-+...
T Consensus 191 v~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~ 244 (286)
T PRK14275 191 LCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQA 244 (286)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence 9999999999999999999999999999999999987643 45555655543
No 232
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.9e-36 Score=303.51 Aligned_cols=181 Identities=27% Similarity=0.318 Sum_probs=146.9
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
-|+++|++++|++ .++++|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.+||+++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 4899999999974 4699999999999999999999999999999999999999999999999998752 346689
Q ss_pred EEEccCCccccc-cHHHHhccCCC--CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCC
Q 005302 579 GFVGQEPKLFRM-DISSNISYGCT--QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRD 655 (703)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~--~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~ 655 (703)
+|++|++.+|.+ |+.||+.++.. ....++++.++++..++.+ ..++.+ ..||||||||++||||++++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~--~~LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAG-------YEDTLV--RQLSAGQKKRLALARLWLSP 155 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChh-------hccCCh--hhCCHHHHHHHHHHHHHhcC
Confidence 999999999987 99999987521 0112334445555544432 223332 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchh
Q 005302 656 PTILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLS 694 (703)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~ 694 (703)
|++|+|||||++||+++.+.+.+.+++. .-.+=.-|-..
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (214)
T PRK13543 156 APLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY 198 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 9999999999999999999999999764 23344455443
No 233
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.5e-36 Score=300.42 Aligned_cols=166 Identities=20% Similarity=0.338 Sum_probs=141.4
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++||+++|++ +.++ ++||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 789999999963 3455 499999999999999999999999999999999999999999999987643 45699
Q ss_pred EEccCCc-cccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCE
Q 005302 580 FVGQEPK-LFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTI 658 (703)
Q Consensus 580 ~V~Qd~~-LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~I 658 (703)
|++|++. +|..|++|||.++.....+++++.++++..++.++..+. ..+||||||||++||||++++|++
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~~rl~la~al~~~p~~ 144 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEK---------CYSLSSGMQKIVAIARLIACQSDL 144 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccC---------hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999875 478999999998643122456777788888876654331 247999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh
Q 005302 659 LILDEATSALDAESEHNIKVATLS 682 (703)
Q Consensus 659 LILDEaTSaLD~~tE~~I~~al~~ 682 (703)
|+|||||++||+++.+.+.+.+++
T Consensus 145 lllDEP~~~LD~~~~~~l~~~l~~ 168 (195)
T PRK13541 145 WLLDEVETNLSKENRDLLNNLIVM 168 (195)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999998863
No 234
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=9.7e-36 Score=311.47 Aligned_cols=186 Identities=28% Similarity=0.380 Sum_probs=154.1
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---cceEEECCEeCCCC-----C
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT---NGQILIDGFPIKEV-----D 570 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~---sG~I~idG~di~~i-----~ 570 (703)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999973 46999999999999999999999999999999999999986 49999999998654 3
Q ss_pred hHHhhcceEEEccCCcccc-ccHHHHhccCCCC-------------CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCC
Q 005302 571 IKWLRGRIGFVGQEPKLFR-MDISSNISYGCTQ-------------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD 636 (703)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~-------------~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~ 636 (703)
...+|+.++||+|++.+|. .|+.||+.++... ...++++.++++..++.+.+.+.| .
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~ 151 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV---------S 151 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc---------c
Confidence 4567889999999999988 5999999875310 112345666777777655543321 4
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHH
Q 005302 637 LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLY 696 (703)
Q Consensus 637 ~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~ 696 (703)
.||||||||++|||||+.+|++|||||||++||.++.+.+.+.|+++. -++=.-|-+...
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~ 216 (262)
T PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYA 216 (262)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 699999999999999999999999999999999999999999998652 356666777653
No 235
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.2e-35 Score=311.75 Aligned_cols=189 Identities=28% Similarity=0.428 Sum_probs=152.3
Q ss_pred cEEEEEEEEEcCCC------CCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChH
Q 005302 499 RIDFVDVSFRYSSR------EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK 572 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~------~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~ 572 (703)
-|+++||+++|+.. .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 124699999999999999999999999999999999999999999999999999866666
Q ss_pred HhhcceEEEccCCc--ccc-ccHHHHhccCC---C---CCCCHHHHHHHHHHhchH-HHHHcCCCCcccccCCCCCChHH
Q 005302 573 WLRGRIGFVGQEPK--LFR-MDISSNISYGC---T---QDIKQQDIEWAAKQAYAH-DFIMSLPSGYETLVDDDLLSGGQ 642 (703)
Q Consensus 573 ~lR~~I~~V~Qd~~--LF~-gTI~eNI~~g~---~---~~~~~e~i~~aa~~A~l~-d~I~~LP~GydT~vGe~~LSGGQ 642 (703)
..++.++||+|++. ++. -|+.||+.+.. . ....++++.++++..+++ +..... ...|||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LS~G~ 154 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYY---------PHMLAPGQ 154 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcC---------chhcCHHH
Confidence 66788999999985 444 38899986531 1 011234567777777773 332221 14799999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHH
Q 005302 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLY 696 (703)
Q Consensus 643 kQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~ 696 (703)
|||++|||||+++|++|||||||++||+++.+.+.+.|+++. -++=.-|-+...
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~ 213 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMM 213 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998742 356666776654
No 236
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-36 Score=311.60 Aligned_cols=190 Identities=32% Similarity=0.431 Sum_probs=154.9
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----cceEEECCEeCCC--CC
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT-----NGQILIDGFPIKE--VD 570 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~-----sG~I~idG~di~~--i~ 570 (703)
+.|+++||+|+|++ +.+|+|+||+|++||.+||+|+||||||||+++|+|+++|+ +|+|.+||+|+.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999974 46999999999999999999999999999999999999996 8999999999853 35
Q ss_pred hHHhhcceEEEccCCccccccHHHHhccCCC-----CCCC-HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHH
Q 005302 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCT-----QDIK-QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQ 644 (703)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-----~~~~-~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQ 644 (703)
...+|+.++||+|++.+|..|+.||+.++.. +..+ ++++.++++..++.+++..+ .+.. -..|||||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LSgGq~q 157 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK---IHKS--ALDLSGGQQQ 157 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH---hcCC--cccCCHHHHH
Confidence 5678899999999999999999999986421 0111 34566777777776655432 1111 1589999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhH
Q 005302 645 RIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSL 695 (703)
Q Consensus 645 RIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~ 695 (703)
|++|||||+++|++|||||||++||+++.+.+.+.|+++ .-.+-.-|-+..
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~ 213 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQ 213 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 999999999999999999999999999999999988763 233445566553
No 237
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=8e-36 Score=318.37 Aligned_cols=183 Identities=23% Similarity=0.384 Sum_probs=150.2
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
++++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+ +...+|+.+|
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999973 569999999999999999999999999999999999999999999999999977 4467889999
Q ss_pred EEccCCccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 580 FVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
|++|++.+|.+ |+.||+.++.. ...+ .+++.++++..++.+.. +..+ ..||||||||++|||||+
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~--~~LS~G~~qrv~la~al~ 149 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-------HKKI--GQLSKGYRQRVGLAQALI 149 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-------cCch--hhCCHHHHHHHHHHHHHh
Confidence 99999999976 99999986421 0112 23344444444443332 1111 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
++|++|||||||++||+++.+.+.+.|+++. ..+=+-|.+..
T Consensus 150 ~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~ 194 (301)
T TIGR03522 150 HDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQE 194 (301)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH
Confidence 9999999999999999999999999998873 34555566653
No 238
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-36 Score=318.44 Aligned_cols=188 Identities=32% Similarity=0.459 Sum_probs=153.8
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCCC--C
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKEV--D 570 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-----p~sG~I~idG~di~~i--~ 570 (703)
..|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.+. +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35999999999974 469999999999999999999999999999999999996 6899999999998653 4
Q ss_pred hHHhhcceEEEccCCccccccHHHHhccCCCC------------------CCCHHHHHHHHHHhchHHHHHcCCCCcccc
Q 005302 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCTQ------------------DIKQQDIEWAAKQAYAHDFIMSLPSGYETL 632 (703)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~------------------~~~~e~i~~aa~~A~l~d~I~~LP~GydT~ 632 (703)
...+|+.|+||+|++.+|++|++||+.++... +..++++.++++..++.++ +++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE-------VNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh-------hhHH
Confidence 56788999999999999999999999975210 0113345555665555433 3344
Q ss_pred cCC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc---EEEEecchhH
Q 005302 633 VDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL---LVKSLHFLSL 695 (703)
Q Consensus 633 vGe--~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~---~~~~~~~~~~ 695 (703)
... .+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|+++.. ++=.-|-+..
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~ 261 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQ 261 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHH
Confidence 443 58999999999999999999999999999999999999999999987643 3344465544
No 239
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-36 Score=324.26 Aligned_cols=180 Identities=27% Similarity=0.437 Sum_probs=153.0
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC----ChHHhh
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV----DIKWLR 575 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i----~~~~lR 575 (703)
|++ ||+++|++ .. + |+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+. +...++
T Consensus 2 l~~-~l~k~~~~---~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999974 22 3 89999999999999999999999999999999999999999999998653 245578
Q ss_pred cceEEEccCCcccc-ccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcC
Q 005302 576 GRIGFVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR 654 (703)
Q Consensus 576 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r 654 (703)
+.++||+|++.+|. .|++|||.++.. ..+++++.++++..++.++..+.| ..||||||||++|||||++
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMA-KSMVAQFDKIVALLGIEPLLDRYP---------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhh-hhhHHHHHHHHHHcCCchhhhCCc---------ccCCHHHHHHHHHHHHHHc
Confidence 89999999999997 699999998754 445677888888888876665544 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 655 DPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
+|++|+||||||+||+.+.+.+.+.|+++. -.+-.-|-...
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~ 191 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDE 191 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Confidence 999999999999999999999999887653 24555566543
No 240
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-36 Score=313.74 Aligned_cols=182 Identities=25% Similarity=0.341 Sum_probs=151.4
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC--------cceEEECCEeCCCCCh
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT--------NGQILIDGFPIKEVDI 571 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~--------sG~I~idG~di~~i~~ 571 (703)
|+++|++++|++ .++|+|+||+|++||.+||+||||||||||+|+|+|+++|+ +|+|.+||.++.+.+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999963 46999999999999999999999999999999999999998 9999999999998888
Q ss_pred HHhhcceEEEccCCc-cccccHHHHhccCCCCC------C---CHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCC
Q 005302 572 KWLRGRIGFVGQEPK-LFRMDISSNISYGCTQD------I---KQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLS 639 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~-LF~gTI~eNI~~g~~~~------~---~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LS 639 (703)
..+++.++||+|++. +|+.|++||+.++.... . +.+++.++++..++. +.++. ..||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-----------ALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-----------hhhcCCcccCC
Confidence 888899999999986 68899999998863111 1 123345555555543 33333 5899
Q ss_pred hHHHHHHHHHHHhc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 640 GGQKQRIAIARAIL---------RDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 640 GGQkQRIaLARAL~---------r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
||||||++|||||+ .+|++|||||||++||+++.+.+.+.|+++. .++-.-|-+..
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~ 217 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL 217 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 99999999999999 5999999999999999999999999987542 34556676554
No 241
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=9.5e-36 Score=294.98 Aligned_cols=155 Identities=29% Similarity=0.489 Sum_probs=137.4
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC-hHHhhcc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD-IKWLRGR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~-~~~lR~~ 577 (703)
-|+++|++++| +++|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|+.
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 38999999998 799999999999999999999999999999999999999999999999998887 4567889
Q ss_pred eEEEccCC----ccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 578 IGFVGQEP----KLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 578 I~~V~Qd~----~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
++||+|++ ..++.|++||+.++. . ||||||||++|||||+
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~--~----------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSS--L----------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHh--h----------------------------------cCHHHHHHHHHHHHHc
Confidence 99999995 345689999998862 1 9999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHH
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLY 696 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~ 696 (703)
++|++|+|||||++||+++.+.+.+.|++.. -.+=.-|-....
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 167 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDEL 167 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 9999999999999999999999999988652 345555765543
No 242
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-36 Score=321.76 Aligned_cols=190 Identities=29% Similarity=0.406 Sum_probs=152.1
Q ss_pred cEEEEEEEEEcCCCC-------CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCh
Q 005302 499 RIDFVDVSFRYSSRE-------MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~-------~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~ 571 (703)
-|+++|++++|+... ..++++||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999997321 2469999999999999999999999999999999999999999999999999988864
Q ss_pred ---HHhhcceEEEccCCc--ccc-ccHHHHhccC-----C-CCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCC
Q 005302 572 ---KWLRGRIGFVGQEPK--LFR-MDISSNISYG-----C-TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLS 639 (703)
Q Consensus 572 ---~~lR~~I~~V~Qd~~--LF~-gTI~eNI~~g-----~-~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LS 639 (703)
..+|+.|+||+||+. |+. -||.+|+... . .+....+++.++++..++++. +++... ..||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~~p--~~LS 156 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE------HYDRYP--HMFS 156 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH------HhcCCC--ccCC
Confidence 357889999999984 555 5899988631 1 111123456777777777431 233322 4799
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHH
Q 005302 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLY 696 (703)
Q Consensus 640 GGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~ 696 (703)
||||||++|||||+.+|++||+|||||+||..+.+.|.+.|+++. ..+=.-|-+.+-
T Consensus 157 gGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~ 218 (327)
T PRK11308 157 GGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVV 218 (327)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999987653 234455666543
No 243
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.4e-35 Score=302.89 Aligned_cols=189 Identities=28% Similarity=0.413 Sum_probs=145.8
Q ss_pred EEEEEEEEEcCCC---C-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEEC--CE--eCCCCCh
Q 005302 500 IDFVDVSFRYSSR---E-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILID--GF--PIKEVDI 571 (703)
Q Consensus 500 I~~~nVsF~Y~~~---~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~id--G~--di~~i~~ 571 (703)
|+++||+++|++. + ..++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+| |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 1 1469999999999999999999999999999999999999999999998 43 6666655
Q ss_pred HH---h-hcceEEEccCCcccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChH
Q 005302 572 KW---L-RGRIGFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGG 641 (703)
Q Consensus 572 ~~---l-R~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGG 641 (703)
.. + ++.++||+|++.+|. -|+.|||.+... ...+ ++++.++++..++.+... +.. ...||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~--~~~LS~G 153 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW------HLP--PATFSGG 153 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh------hCC--cccCCHH
Confidence 43 3 467999999998877 499999976311 0222 233344444444432221 111 2479999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHH
Q 005302 642 QKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLY 696 (703)
Q Consensus 642 QkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~ 696 (703)
||||++|||||+++|++|||||||++||+++.+.+.+.|++.. -++=.-|-....
T Consensus 154 ~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~ 212 (224)
T TIGR02324 154 EQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVR 212 (224)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998752 345556765443
No 244
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=311.25 Aligned_cols=188 Identities=32% Similarity=0.447 Sum_probs=154.5
Q ss_pred CCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCC----
Q 005302 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIK---- 567 (703)
Q Consensus 497 ~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-----~sG~I~idG~di~---- 567 (703)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.+||.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 457999999999974 4699999999999999999999999999999999999985 7999999998874
Q ss_pred CCChHHhhcceEEEccCCccccccHHHHhccCCC-CC-----CCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCC
Q 005302 568 EVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCT-QD-----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLS 639 (703)
Q Consensus 568 ~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-----~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LS 639 (703)
+.+...+|+.|+|++|++.+|.+|++|||.++.. .. ..++++.++++.+++.+++. +..+. ..||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCC
Confidence 3345678899999999999999999999987521 01 12356677777777654433 22232 4899
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc---EEEEecchh
Q 005302 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL---LVKSLHFLS 694 (703)
Q Consensus 640 GGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~---~~~~~~~~~ 694 (703)
||||||++|||||+++|++|||||||++||+++.+.+.+.|+++.. .+=.-|-+.
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~ 221 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQ 221 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHH
Confidence 9999999999999999999999999999999999999999987642 344445443
No 245
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-36 Score=307.42 Aligned_cols=180 Identities=29% Similarity=0.485 Sum_probs=152.0
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++|++++|++ + +++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~---~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE---F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC---c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999973 2 7999999999999999999999999999999999999999999999999987654 378999
Q ss_pred EEccCCcccc-ccHHHHhccCCC-CCC----CHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 580 FVGQEPKLFR-MDISSNISYGCT-QDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~----~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
+|+|++.+|. .|+.||+.++.. ... .++++.++++..++.+++.+.| ..||||||||++||||++
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~ 145 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP---------ETLSGGEQQRVAIARALV 145 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc---------ccCCHHHHHHHHHHHHHH
Confidence 9999999995 799999987531 111 2345667777777777665544 469999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchh
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLS 694 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~ 694 (703)
++|++|+|||||++||+++.+.+.+.++++ .-++=+-|-+.
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~ 191 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE 191 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 999999999999999999999999988764 24555666554
No 246
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=310.40 Aligned_cols=189 Identities=28% Similarity=0.370 Sum_probs=157.4
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCC--CCh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKE--VDI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-----~sG~I~idG~di~~--i~~ 571 (703)
.+.+++++++|++ .++++|+||+|++||++||+|+||||||||+|+|+|+++| ++|+|.+||.++.+ .+.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4889999999963 4699999999999999999999999999999999999987 79999999999864 344
Q ss_pred HHhhcceEEEccCCccccccHHHHhccCCC----CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005302 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT----QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~----~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (703)
..+|+.|+||+|++.+|..|+.|||.++.. .....+++.++++.+++.+.+.... +. ...+||||||||++
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~---~~--~~~~LS~G~~qrv~ 159 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKL---KV--SGLSLSGGQQQRLC 159 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhh---hC--CcccCCHHHHHHHH
Confidence 577889999999999999999999997631 0112467888888888876654321 11 12589999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 648 IARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 648 LARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
|||||+++|++|||||||++||+.+...+.+.|+++. -++-.-|-+..
T Consensus 160 laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~ 210 (261)
T PRK14263 160 IARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQ 210 (261)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 9999999999999999999999999999999998764 23445565543
No 247
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=308.17 Aligned_cols=188 Identities=34% Similarity=0.465 Sum_probs=148.6
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----cceEEECCEeCCC--CCh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT-----NGQILIDGFPIKE--VDI 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~-----sG~I~idG~di~~--i~~ 571 (703)
-|+++||+++|++ .++++|+||+|++||++||+||||||||||+|+|+|+++|+ +|+|.+||.++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3789999999973 46999999999999999999999999999999999999875 8999999999875 345
Q ss_pred HHhhcceEEEccCCcccc-ccHHHHhccCCC-CCC-CHHHHHHH----HHHhchHHHHHcCCCCcccccCCCCCChHHHH
Q 005302 572 KWLRGRIGFVGQEPKLFR-MDISSNISYGCT-QDI-KQQDIEWA----AKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQ 644 (703)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~-~~e~i~~a----a~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQ 644 (703)
..+|+.|+|++|++.+|. .|+.||+.++.. ... .+++..+. ++..++.+.+ +...++.+ .+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~~--~~LS~G~~q 155 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKTPA--TGLSGGQQQ 155 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcCCc--ccCCHHHHH
Confidence 678899999999999998 499999986521 111 23333332 2333333222 22233332 479999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchh
Q 005302 645 RIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLS 694 (703)
Q Consensus 645 RIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~ 694 (703)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++. -.+=.-|-+.
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~ 208 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMH 208 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 9999999999999999999999999999999999998764 2344445544
No 248
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.6e-35 Score=320.48 Aligned_cols=189 Identities=31% Similarity=0.462 Sum_probs=153.2
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+++|++ ..+|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||+|+.+.+ ..+|+.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 4999999999974 46999999999999999999999999999999999999999999999999998654 5688999
Q ss_pred EEEccCCccc-cccHHHHhccCCC-CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCC
Q 005302 579 GFVGQEPKLF-RMDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (703)
Q Consensus 579 ~~V~Qd~~LF-~gTI~eNI~~g~~-~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p 656 (703)
|||+|++.+| ..|+.||+.++.. ...+.++..+.++. +.+. ..|++..++.+ .+||||||||++|||||+.+|
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~-~~L~~~~~~~~--~~LS~G~kqrv~lA~aL~~~P 191 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPS--LLEF-ARLESKADARV--SDLSGGMKRRLTLARALINDP 191 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH--HHHH-cCCchhhCCCh--hhCCHHHHHHHHHHHHHhcCC
Confidence 9999999986 5799999986421 11232322222211 1111 23454555555 379999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHH
Q 005302 657 TILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLY 696 (703)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~ 696 (703)
++|||||||++||+.+.+.+.+.|+++. -.+=+-|.+..-
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~ 235 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEA 235 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence 9999999999999999999999998763 356677877653
No 249
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.7e-35 Score=302.16 Aligned_cols=181 Identities=27% Similarity=0.411 Sum_probs=151.2
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
++++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999974 46999999999999999999999999999999999999999999999999886422 35799
Q ss_pred EEccCCcccc-ccHHHHhccCCC-CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCC
Q 005302 580 FVGQEPKLFR-MDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT 657 (703)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ 657 (703)
|++|++.+|. .|++||+.++.. ...+++++.++++..++.+....-| ..||||||||++||||++++|+
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~~rv~laral~~~p~ 144 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKA---------KQFSLGMKQRLGIAIALLNHPK 144 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhH---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999887 699999986421 1234667777887777766543311 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHH
Q 005302 658 ILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLY 696 (703)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~ 696 (703)
+|+|||||++||+++.+.+.+.|+++. ..+=.-|-....
T Consensus 145 llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~ 187 (223)
T TIGR03740 145 LLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEV 187 (223)
T ss_pred EEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 999999999999999999999997653 245556766543
No 250
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1e-35 Score=317.73 Aligned_cols=180 Identities=24% Similarity=0.369 Sum_probs=145.6
Q ss_pred EcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCcc
Q 005302 508 RYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKL 587 (703)
Q Consensus 508 ~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~L 587 (703)
+|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++.. ....+|+.||||+|++.+
T Consensus 2 ~y~~---~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~ 77 (302)
T TIGR01188 2 VYGD---FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASV 77 (302)
T ss_pred eeCC---eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCC
Confidence 5652 469999999999999999999999999999999999999999999999999976 446778999999999999
Q ss_pred ccc-cHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEE
Q 005302 588 FRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILIL 661 (703)
Q Consensus 588 F~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILIL 661 (703)
|.. |++||+.++.. ...+ ++++.++++..++.+.. ++.+ ..||||||||++|||||+++|++|||
T Consensus 78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~--~~LSgG~~qrv~la~al~~~p~lllL 148 (302)
T TIGR01188 78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-------DRPV--GTYSGGMRRRLDIAASLIHQPDVLFL 148 (302)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------CCch--hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 986 99999987421 0112 23455556665554332 2222 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHHHHhh
Q 005302 662 DEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLYVLIC 700 (703)
Q Consensus 662 DEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~~~~~ 700 (703)
||||++||+++.+.+.+.|+++. -++-+-|-+...--+|
T Consensus 149 DEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~ 191 (302)
T TIGR01188 149 DEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLC 191 (302)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC
Confidence 99999999999999999988753 3556667766544344
No 251
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-35 Score=309.58 Aligned_cols=183 Identities=26% Similarity=0.383 Sum_probs=148.1
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+++|+++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++.. ...++.+
T Consensus 6 ~l~~~~l~~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRNG--HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecCC--cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 58999999999742 469999999999999999999999999999999999999999999999999752 2223469
Q ss_pred EEEccCCcc---ccccHHHHhccCCC---------CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005302 579 GFVGQEPKL---FRMDISSNISYGCT---------QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI 646 (703)
Q Consensus 579 ~~V~Qd~~L---F~gTI~eNI~~g~~---------~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRI 646 (703)
+||+|++.+ +..+++||+.++.. ...+++++.++++..++.++..+ .+ ..||||||||+
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~~--~~LSgG~~qrv 151 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR-------QI--GELSGGQKKRV 151 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcC-------Cc--ccCCHHHHHHH
Confidence 999999865 56689999975411 01123456677777777665432 22 36999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 647 AIARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 647 aLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
+|||||+++|++|+|||||++||+++.+.+.+.|+++. -++=.-|-+..
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~ 204 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGS 204 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 99999999999999999999999999999999997652 24555566543
No 252
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.2e-35 Score=297.35 Aligned_cols=159 Identities=31% Similarity=0.515 Sum_probs=138.6
Q ss_pred cEEEEEEEEEcCCC---CCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCcceEEECCEeCCCCChHH
Q 005302 499 RIDFVDVSFRYSSR---EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY--EPTNGQILIDGFPIKEVDIKW 573 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~---~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly--~p~sG~I~idG~di~~i~~~~ 573 (703)
.|+++||+|+|++. .+.++++|+||+|++||.++|+||||||||||+|+|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999752 0257999999999999999999999999999999999999 9999999999999875 36
Q ss_pred hhcceEEEccCCcccc-ccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 574 LRGRIGFVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 574 lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
+|+.++|++|++.+|. .|++||+.++.. .. .||||||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~--~~-------------------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK--LR-------------------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH--hc-------------------------------cCCHHHHHHHHHHHHH
Confidence 7889999999999987 499999976411 00 7999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecch
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFL 693 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~ 693 (703)
+++|++|+|||||++||+.+.+.+.+.|+++. -++=.-|-.
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 171 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQP 171 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 99999999999999999999999999998753 234445654
No 253
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-35 Score=319.05 Aligned_cols=191 Identities=28% Similarity=0.330 Sum_probs=149.2
Q ss_pred cEEEEEEEEEcCCCCC-cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC----CCcceEEECCEeCCCCChHH
Q 005302 499 RIDFVDVSFRYSSREM-VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE----PTNGQILIDGFPIKEVDIKW 573 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~----p~sG~I~idG~di~~i~~~~ 573 (703)
-|+++||+++|+.... ..+|+||||+|++||.+||||+||||||||+++|+|+++ |++|+|.+||+|+.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999975321 369999999999999999999999999999999999998 48999999999999888766
Q ss_pred hh----cceEEEccCCc--ccc-ccHH----HHhccCC--CCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCCh
Q 005302 574 LR----GRIGFVGQEPK--LFR-MDIS----SNISYGC--TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSG 640 (703)
Q Consensus 574 lR----~~I~~V~Qd~~--LF~-gTI~----eNI~~g~--~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSG 640 (703)
++ +.|+||+|++. +.. -|+. ||+.... ......+++.++++..++.+....+ +.. ...|||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l----~~~--p~~LSg 156 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRL----DVY--PHQLSG 156 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHH----hCC--chhCCH
Confidence 54 37999999985 332 3455 4444321 1112345677778887775432111 111 147999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-----EEEEecchhH
Q 005302 641 GQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL-----LVKSLHFLSL 695 (703)
Q Consensus 641 GQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-----~~~~~~~~~~ 695 (703)
|||||++|||||+.+|++||+|||||+||+.+.+.|.+.|+++.. ++=.-|-+..
T Consensus 157 Gq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~ 216 (326)
T PRK11022 157 GMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLAL 216 (326)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999999999999999999999999999999999999887633 4555676664
No 254
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-35 Score=297.03 Aligned_cols=159 Identities=26% Similarity=0.407 Sum_probs=138.1
Q ss_pred cEEEEEEEEEcCCCC-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCcceEEECCEeCCCCChHHhh
Q 005302 499 RIDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY--EPTNGQILIDGFPIKEVDIKWLR 575 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly--~p~sG~I~idG~di~~i~~~~lR 575 (703)
.|+++|++|+|++.. +.++++|+||+|++||.++|+||||||||||+|+|+|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 489999999997521 256999999999999999999999999999999999986 489999999999986 5678
Q ss_pred cceEEEccCCccccc-cHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcC
Q 005302 576 GRIGFVGQEPKLFRM-DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR 654 (703)
Q Consensus 576 ~~I~~V~Qd~~LF~g-TI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r 654 (703)
+.++|++|++.+|.+ |++||+.++. . ++ .||||||||++|||||++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~--~---------~~----------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA--L---------LR----------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH--H---------Hh----------------------cCCHHHhHHHHHHHHHhc
Confidence 899999999988885 9999998751 0 00 799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchh
Q 005302 655 DPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLS 694 (703)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~ 694 (703)
+|++|+|||||++||+++.+.+.+.|++.. -++=.-|-+.
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 999999999999999999999999988653 3455556654
No 255
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-36 Score=307.43 Aligned_cols=174 Identities=30% Similarity=0.478 Sum_probs=148.2
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE---eCCCCChHHhh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF---PIKEVDIKWLR 575 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~---di~~i~~~~lR 575 (703)
.|+++|++..|+. ..+++|||++|+.||.+|+.||||||||||+++|.|+..|++|.|.+||. |.++. ..-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhh
Confidence 4789999999984 46899999999999999999999999999999999999999999999999 66653 3345
Q ss_pred cceEEEccCCcccc-ccHHHHhccCCCC-------CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005302 576 GRIGFVGQEPKLFR-MDISSNISYGCTQ-------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (703)
Q Consensus 576 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~~-------~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (703)
++||+|+|+.-||. .||+|||+||-.- ...+.++.+-++.+++.+.-++-| .+||||||||+|
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP---------~QLSGGQrQRVA 147 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP---------AQLSGGQRQRVA 147 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc---------hhcChHHHHHHH
Confidence 78999999999986 8999999999621 123455666677777665544444 469999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcE
Q 005302 648 IARAILRDPTILILDEATSALDAESEHNIKVATLSNGLL 686 (703)
Q Consensus 648 LARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~ 686 (703)
|||||.-+|++|+||||.++||++-.+.+.+.|+++.+-
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~ 186 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR 186 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998876553
No 256
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-35 Score=307.41 Aligned_cols=189 Identities=29% Similarity=0.400 Sum_probs=151.4
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECC------EeCCCCChH
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG------FPIKEVDIK 572 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG------~di~~i~~~ 572 (703)
.|+++|++++|++ +++++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.++| .++.+.+..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 5999999999974 4699999999999999999999999999999999999999997666665 677777777
Q ss_pred HhhcceEEEccCCccccc-cHHHHhccCCCC-CC-CH----HHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHH
Q 005302 573 WLRGRIGFVGQEPKLFRM-DISSNISYGCTQ-DI-KQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (703)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~~-~~-~~----e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (703)
.+|+.++|++|++.+|.+ |+.|||.++... .. ++ +++.++++..++++++... .+.. ...||||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~--~~~LS~G~~qr 161 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDR---LNSP--ASQLSGGQQQR 161 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhh---hcCC--cccCCHHHHHH
Confidence 889999999999999986 999999975320 11 22 3345666666665433111 1111 14799999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
++|||||+++|++|+|||||++||..+++.+.+.|.++. -++=.-|-...
T Consensus 162 l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~ 214 (257)
T PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQ 214 (257)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHH
Confidence 999999999999999999999999999999999998764 34445565543
No 257
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.7e-35 Score=306.70 Aligned_cols=189 Identities=26% Similarity=0.292 Sum_probs=143.2
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCcceEEECCEeCCCCChHHhh-c
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL--YEPTNGQILIDGFPIKEVDIKWLR-G 576 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl--y~p~sG~I~idG~di~~i~~~~lR-~ 576 (703)
|+++||+++|++ .++++|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+.+....+ +
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999974 4699999999999999999999999999999999999 479999999999999888776654 5
Q ss_pred ceEEEccCCccccc-cHHHHhc-------cCCCCC-CCHHHHHHHHHHhchHHHHH--cCCCCcccccCCCCCChHHHHH
Q 005302 577 RIGFVGQEPKLFRM-DISSNIS-------YGCTQD-IKQQDIEWAAKQAYAHDFIM--SLPSGYETLVDDDLLSGGQKQR 645 (703)
Q Consensus 577 ~I~~V~Qd~~LF~g-TI~eNI~-------~g~~~~-~~~e~i~~aa~~A~l~d~I~--~LP~GydT~vGe~~LSGGQkQR 645 (703)
.++||+|++.++.. |..+|+. .....+ .+..++.+ .+.+.+. .+|.++.+......||||||||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 153 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQD-----LMEEKIALLKMPEDLLTRSVNVGFSGGEKKR 153 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHH-----HHHHHHHHcCCChhhcccCCCCCCCHHHHHH
Confidence 79999999987764 4444432 211100 11111111 1112222 3555555544334799999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHH
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLY 696 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~ 696 (703)
++|||||+++|+||+|||||++||+++.+.+.+.|+++. -.+=.-|-....
T Consensus 154 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~ 208 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRIL 208 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 999999999999999999999999999999998776542 345566765543
No 258
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-35 Score=297.27 Aligned_cols=179 Identities=28% Similarity=0.399 Sum_probs=142.9
Q ss_pred EEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC----ChHHhhc
Q 005302 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV----DIKWLRG 576 (703)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i----~~~~lR~ 576 (703)
++ ||+++|++. .+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.+||.++.+. +...+|+
T Consensus 3 ~~-~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 45 999999752 34 99999999 99999999999999999999999999999999999998643 2345788
Q ss_pred ceEEEccCCcccc-ccHHHHhccCCCCCC----CHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005302 577 RIGFVGQEPKLFR-MDISSNISYGCTQDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (703)
Q Consensus 577 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~----~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (703)
.++||+|++.+|. .|++||+.++.. .. +++++.++++..++.+..... -..||||||||++||||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~la~a 145 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLK-RKRNREDRISVDELLDLLGLDHLLNRY---------PAQLSGGEKQRVALARA 145 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHh-hCCHHHHHHHHHHHHHHcCCHhHhhcC---------cccCCHHHHHHHHHHHH
Confidence 9999999999996 599999987632 21 223344455554443332211 14799999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHH
Q 005302 652 ILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLY 696 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~ 696 (703)
|+++|++|||||||++||+++.+.+.+.|+++. -++=+-|-....
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 195 (214)
T cd03297 146 LAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEA 195 (214)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHH
Confidence 999999999999999999999999999987642 245556766543
No 259
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4.4e-35 Score=305.88 Aligned_cols=188 Identities=28% Similarity=0.370 Sum_probs=146.3
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEe-----CCCCChHH
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFP-----IKEVDIKW 573 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~d-----i~~i~~~~ 573 (703)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999974 469999999999999999999999999999999999999999999999999 87776554
Q ss_pred ----hhcceEEEccCCc--cc-cccHHHHhccCC--CCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHH
Q 005302 574 ----LRGRIGFVGQEPK--LF-RMDISSNISYGC--TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQ 642 (703)
Q Consensus 574 ----lR~~I~~V~Qd~~--LF-~gTI~eNI~~g~--~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQ 642 (703)
+++.++||+|++. ++ +.|+.|||.+.- ....+.+++.+ .+++++..++.+ ++..+. ..|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEID-AARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCC-hhHHhCCCccCCHHH
Confidence 3668999999984 33 358888986421 00112222211 234556655432 123333 5899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhH
Q 005302 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSL 695 (703)
Q Consensus 643 kQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~ 695 (703)
|||++|||||+++|++|||||||++||+++++.+.+.|+++ .-++-.-|-+..
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~ 214 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV 214 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 99999999999999999999999999999999999998654 234555566544
No 260
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.1e-35 Score=310.16 Aligned_cols=190 Identities=31% Similarity=0.422 Sum_probs=149.1
Q ss_pred cEEEEEEEEEcCCC------CCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCh-
Q 005302 499 RIDFVDVSFRYSSR------EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI- 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~------~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~- 571 (703)
-|+++||+|+|+++ .++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38899999999741 02579999999999999999999999999999999999999999999999999988765
Q ss_pred --HHhhcceEEEccCCc--cc-cccHHHHhccCCC--CCCCHHHHHHHHHHhchHHHHHcCCCCcccc-cCC--CCCChH
Q 005302 572 --KWLRGRIGFVGQEPK--LF-RMDISSNISYGCT--QDIKQQDIEWAAKQAYAHDFIMSLPSGYETL-VDD--DLLSGG 641 (703)
Q Consensus 572 --~~lR~~I~~V~Qd~~--LF-~gTI~eNI~~g~~--~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~-vGe--~~LSGG 641 (703)
..+|+.++||+|++. ++ ..|+.||+.+... .+.+. ......+++.+..+ |+++. .+. ..||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~-----~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDK-----AERLARASEMLRAV--DLDDSVLDKRPPQLSGG 155 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCH-----HHHHHHHHHHHHHc--CCChhHhhCCCccCChH
Confidence 357889999999983 43 4799999865311 01111 12222344555543 55542 222 489999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 642 QKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 642 QkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
||||++|||||+.+|++|||||||++||+++.+.+.+.|+++. .++=.-|-...
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~ 214 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRL 214 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHH
Confidence 9999999999999999999999999999999999999887542 34555676554
No 261
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=4.9e-35 Score=318.95 Aligned_cols=178 Identities=31% Similarity=0.455 Sum_probs=145.5
Q ss_pred EEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC----hHHhhcceE
Q 005302 504 DVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD----IKWLRGRIG 579 (703)
Q Consensus 504 nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~----~~~lR~~I~ 579 (703)
|++++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|+.++
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 89999974 23 4 999999999999999999999999999999999999999999999987542 346788999
Q ss_pred EEccCCccccc-cHHHHhccCCCCCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcC
Q 005302 580 FVGQEPKLFRM-DISSNISYGCTQDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR 654 (703)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r 654 (703)
||+|++.+|.. |++||+.++.. ..+ ++++.++++..++.+...+.| ..||||||||++|||||++
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMK-RARPSERRISFERVIELLGIGHLLGRLP---------GRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhh-ccChhHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHHc
Confidence 99999999975 99999998642 211 234556666666554443332 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHH
Q 005302 655 DPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLY 696 (703)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~ 696 (703)
+|++|+||||||+||+++.+.+.+.|+++. -.+=.-|-+...
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~ 195 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEV 195 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 999999999999999999999999987652 245566766543
No 262
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=4e-35 Score=320.49 Aligned_cols=181 Identities=26% Similarity=0.370 Sum_probs=148.4
Q ss_pred EEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE----eCCCCChHHh---h-
Q 005302 504 DVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF----PIKEVDIKWL---R- 575 (703)
Q Consensus 504 nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~----di~~i~~~~l---R- 575 (703)
++..+|+. ..+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||. ++.+.+...+ |
T Consensus 29 ~~~~~~g~---~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~ 105 (382)
T TIGR03415 29 EILDETGL---VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRT 105 (382)
T ss_pred HHHHhhCC---EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhc
Confidence 44556653 46899999999999999999999999999999999999999999999997 6766665544 3
Q ss_pred cceEEEccCCcccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005302 576 GRIGFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (703)
Q Consensus 576 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (703)
++|+||+|++.+|+ .|++|||.++.. ...+ .+++.++++..++.++....| ..||||||||++||
T Consensus 106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~---------~~LSgGq~QRV~LA 176 (382)
T TIGR03415 106 HRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP---------GELSGGMQQRVGLA 176 (382)
T ss_pred CCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHH
Confidence 68999999999998 799999998631 0112 345667788877766654433 36999999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-----EEEEecchhHH
Q 005302 650 RAILRDPTILILDEATSALDAESEHNIKVATLSNGL-----LVKSLHFLSLY 696 (703)
Q Consensus 650 RAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-----~~~~~~~~~~~ 696 (703)
|||+++|+|||||||||+||+.+.+.+++.|.++.. .+=.-|-+..-
T Consensus 177 RALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~ 228 (382)
T TIGR03415 177 RAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEA 228 (382)
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999999999999999999999999999999976532 45566766543
No 263
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=6.3e-35 Score=304.03 Aligned_cols=187 Identities=23% Similarity=0.325 Sum_probs=149.8
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC----CcceEEECCEeCCCCChHHh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP----TNGQILIDGFPIKEVDIKWL 574 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p----~sG~I~idG~di~~i~~~~l 574 (703)
.|+++||+++| + .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 2 3699999999999999999999999999999999999999 999999999998632 233
Q ss_pred hcceEEEccCCc-ccc--ccHHHHhccC----CCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHH
Q 005302 575 RGRIGFVGQEPK-LFR--MDISSNISYG----CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQR 645 (703)
Q Consensus 575 R~~I~~V~Qd~~-LF~--gTI~eNI~~g----~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQR 645 (703)
++.|+||+|++. .|. .|+.+|+.+. .. ..+++++.++++..++.++ ++.++. ..||||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qr 148 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGK-PADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQR 148 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCC-ChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHH
Confidence 568999999985 444 5888887542 11 2345667777777776542 112232 5799999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHHHHhh
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLYVLIC 700 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~~~~~ 700 (703)
++|||||+++|++||||||||+||+++.+.+.+.|+++. -.+-.-|-.....-+|
T Consensus 149 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~ 208 (254)
T PRK10418 149 MMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLA 208 (254)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhC
Confidence 999999999999999999999999999999999987652 3455667666544333
No 264
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=6.5e-35 Score=303.52 Aligned_cols=173 Identities=31% Similarity=0.459 Sum_probs=148.9
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 4899999999974 4699999999999999999999999999999999999999999999987 3479
Q ss_pred EEEccCCcccc---ccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCC
Q 005302 579 GFVGQEPKLFR---MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRD 655 (703)
Q Consensus 579 ~~V~Qd~~LF~---gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~ 655 (703)
+||+|++.++. .|+.+|+.+. + ..+++++.++++..++.+.+.+.+ ..||||||||++|||||+++
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-~-~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrv~laral~~~ 138 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-P-GTKKEDILPALKRVQAGHLIDAPM---------QKLSGGETQRVLLARALLNR 138 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-c-cccHHHHHHHHHHcCChHHHhCCh---------hhCCHHHHHHHHHHHHHhcC
Confidence 99999998865 4899998765 3 456788899999999887765422 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhHH
Q 005302 656 PTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSLY 696 (703)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~~ 696 (703)
|++|||||||++||+++.+.+.+.|+++ .-++=.-|-+...
T Consensus 139 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i 184 (251)
T PRK09544 139 PQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLV 184 (251)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 9999999999999999999999988654 2345556766543
No 265
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-35 Score=314.79 Aligned_cols=190 Identities=19% Similarity=0.291 Sum_probs=151.4
Q ss_pred cEEEEEEEEEcCCCC-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC----CCcceEEECCEeCCCCChHH
Q 005302 499 RIDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE----PTNGQILIDGFPIKEVDIKW 573 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~----p~sG~I~idG~di~~i~~~~ 573 (703)
-|+++||+++|+..+ ..++++|+||+|++||++||||+||||||||+++|+|+.+ |++|+|.+||+++.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 378999999996421 2469999999999999999999999999999999999986 68999999999999888765
Q ss_pred hh----cceEEEccCCcc--c-cccHHHHhccCC----C-C----C--CCHHHHHHHHHHhchHHH---HHcCCCCcccc
Q 005302 574 LR----GRIGFVGQEPKL--F-RMDISSNISYGC----T-Q----D--IKQQDIEWAAKQAYAHDF---IMSLPSGYETL 632 (703)
Q Consensus 574 lR----~~I~~V~Qd~~L--F-~gTI~eNI~~g~----~-~----~--~~~e~i~~aa~~A~l~d~---I~~LP~GydT~ 632 (703)
++ +.|+||+|++.. + ..||.+|+.... . . + ..++++.++++..++++. ..+.|
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p------ 156 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP------ 156 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc------
Confidence 53 579999999973 2 368999996420 0 0 0 113456677777777532 22222
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-----EEEEecchhHHH
Q 005302 633 VDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL-----LVKSLHFLSLYV 697 (703)
Q Consensus 633 vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-----~~~~~~~~~~~~ 697 (703)
..||||||||++|||||+.+|++||+|||||+||+.+.+.|.+.|+++.. .+=.-|-+...-
T Consensus 157 ---~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~ 223 (330)
T PRK15093 157 ---YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLS 223 (330)
T ss_pred ---hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 47999999999999999999999999999999999999999999987543 455557666543
No 266
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=8.6e-35 Score=313.84 Aligned_cols=190 Identities=26% Similarity=0.363 Sum_probs=148.0
Q ss_pred cEEEEEEEEEcCCCC-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---cceEEECCEeCCCCChHHh
Q 005302 499 RIDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT---NGQILIDGFPIKEVDIKWL 574 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~---sG~I~idG~di~~i~~~~l 574 (703)
-++++|++++|+... ..++++|+||+|++||++||||+||||||||+++|+|+++|+ +|+|.+||.|+.+++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 489999999996421 246999999999999999999999999999999999999996 9999999999999887765
Q ss_pred h----cceEEEccCC--cccc-ccHHHHhccCC--CCCCCHHH----HHHHHHHhchHHHHHcCCCCcccccCC--CCCC
Q 005302 575 R----GRIGFVGQEP--KLFR-MDISSNISYGC--TQDIKQQD----IEWAAKQAYAHDFIMSLPSGYETLVDD--DLLS 639 (703)
Q Consensus 575 R----~~I~~V~Qd~--~LF~-gTI~eNI~~g~--~~~~~~e~----i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LS 639 (703)
| +.|+||+||+ .++. .|+.+||.... ....+.++ +.+.++..+ ||++++. ++. ..||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vg-------L~~~~~~-~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVK-------MPEARKR-MKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-------CCChHHH-hcCCcccCC
Confidence 3 4899999998 3544 57777764311 00223332 333344333 4444332 333 5899
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-----EEEEecchhHH
Q 005302 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL-----LVKSLHFLSLY 696 (703)
Q Consensus 640 GGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-----~~~~~~~~~~~ 696 (703)
||||||++|||||+.+|++||+|||||+||..+...|.+.|+++.. ++=.-|-+...
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~ 225 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVV 225 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998876533 44555766643
No 267
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.7e-34 Score=300.09 Aligned_cols=188 Identities=24% Similarity=0.289 Sum_probs=148.5
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCcceEEECCEeCCCCChHHhhc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL--YEPTNGQILIDGFPIKEVDIKWLRG 576 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl--y~p~sG~I~idG~di~~i~~~~lR~ 576 (703)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.+||.++.+++...+++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4899999999974 4699999999999999999999999999999999998 6899999999999999888766655
Q ss_pred -ceEEEccCCccccc-cHHHHhccCCCC--------CCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHH
Q 005302 577 -RIGFVGQEPKLFRM-DISSNISYGCTQ--------DIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQ 642 (703)
Q Consensus 577 -~I~~V~Qd~~LF~g-TI~eNI~~g~~~--------~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQ 642 (703)
.+++++|++.+|.+ |+.+|+.++... +.+ .+++.++++..++.+.. .+..++ ..|||||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~-~~LSgG~ 156 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSF------LSRNVN-EGFSGGE 156 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhh------hccccc-cCCCHHH
Confidence 48999999999986 689998764210 111 12334455555543111 122221 1499999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchhHH
Q 005302 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLSLY 696 (703)
Q Consensus 643 kQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~~~ 696 (703)
|||++|||||+++|++|||||||++||+++.+.+.+.|+++ .-++-.-|-....
T Consensus 157 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~ 214 (252)
T CHL00131 157 KKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLL 214 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 99999999999999999999999999999999999988765 2345566765543
No 268
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=9.5e-35 Score=302.29 Aligned_cols=188 Identities=28% Similarity=0.383 Sum_probs=145.4
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEe-----CCCCChHH
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFP-----IKEVDIKW 573 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~d-----i~~i~~~~ 573 (703)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.+ +..++...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999974 358999999999999999999999999999999999999999999999988 77666543
Q ss_pred ----hhcceEEEccCCcc---ccccHHHHhccCC--CCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHH
Q 005302 574 ----LRGRIGFVGQEPKL---FRMDISSNISYGC--TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQ 642 (703)
Q Consensus 574 ----lR~~I~~V~Qd~~L---F~gTI~eNI~~g~--~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQ 642 (703)
+++.|+|++|++.+ +..|+.||+.+.. ....+..+. ...+++++..++.+ ++.... ..|||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l~l~-~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEVEID-PTRIDDLPRAFSGGM 153 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHcCCC-hhhhhcCchhcCHHH
Confidence 34679999999852 3468889986421 001111111 12345566665432 133333 4899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhH
Q 005302 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSL 695 (703)
Q Consensus 643 kQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~ 695 (703)
|||++|||||+++|++|||||||++||+.+.+.+.+.|++. .-++-+-|-...
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~ 211 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGV 211 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99999999999999999999999999999999998888653 234556676543
No 269
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.1e-34 Score=308.09 Aligned_cols=190 Identities=34% Similarity=0.523 Sum_probs=160.7
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+.+|+. +..+|+||||+|++||.+|++||||||||||+|+|+|+..|++|+|.++|.|...- ...+|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999983 25799999999999999999999999999999999999999999999999998765 78899999
Q ss_pred EEEccCCcccc-ccHHHHhccCCC-----CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 579 GFVGQEPKLFR-MDISSNISYGCT-----QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~-----~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
|||+|++.++. -|++||+.|... ++.+++++.+.++..++.+.- +..+ ..||||||||++||+||
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~~--~~lS~G~kqrl~ia~aL 151 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKKV--RTLSGGMKQRLSIALAL 151 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Ccch--hhcCHHHHHHHHHHHHH
Confidence 99999999776 689999987531 112356788888888876521 1111 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-----EEEEecchhHHHHhh
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSNGL-----LVKSLHFLSLYVLIC 700 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-----~~~~~~~~~~~~~~~ 700 (703)
..+|++||||||||+||+.+.+.+.+.|+++.. ++=|-|.+.----+|
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~ 204 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELC 204 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhC
Confidence 999999999999999999999999999876544 667788877555545
No 270
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.2e-34 Score=286.49 Aligned_cols=156 Identities=35% Similarity=0.501 Sum_probs=136.7
Q ss_pred EEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEE
Q 005302 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF 580 (703)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~ 580 (703)
+++||+|+|++ .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999974 469999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEE
Q 005302 581 VGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILI 660 (703)
Q Consensus 581 V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILI 660 (703)
|+| +++..++.+++... ...||||||||++|||||+++|+++|
T Consensus 78 ~~q----------------------------~l~~~gl~~~~~~~---------~~~LS~G~~qrl~laral~~~p~lll 120 (180)
T cd03214 78 VPQ----------------------------ALELLGLAHLADRP---------FNELSGGERQRVLLARALAQEPPILL 120 (180)
T ss_pred HHH----------------------------HHHHcCCHhHhcCC---------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999 66677777665432 25799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHH
Q 005302 661 LDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLY 696 (703)
Q Consensus 661 LDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~ 696 (703)
|||||++||+++.+.+.+.|++.. -++-.-|-....
T Consensus 121 lDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 121 LDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999999999999999999887652 345555765543
No 271
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.6e-34 Score=281.45 Aligned_cols=138 Identities=36% Similarity=0.505 Sum_probs=124.4
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHhhcce
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI-KWLRGRI 578 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~-~~lR~~I 578 (703)
|+++||+++|++ .++++|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++...+. +..|+.+
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 578999999974 369999999999999999999999999999999999999999999999999998875 4567889
Q ss_pred EEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCE
Q 005302 579 GFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTI 658 (703)
Q Consensus 579 ~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~I 658 (703)
+|++| ||||||||++||||++++|++
T Consensus 78 ~~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 78 AMVYQ------------------------------------------------------LSVGERQMVEIARALARNARL 103 (163)
T ss_pred EEEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchh
Q 005302 659 LILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLS 694 (703)
Q Consensus 659 LILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~ 694 (703)
|+|||||++||+++.+.+.+.|++.. -.+=.-|-..
T Consensus 104 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 104 LILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 99999999999999999999997653 2344455543
No 272
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.4e-34 Score=326.89 Aligned_cols=190 Identities=26% Similarity=0.327 Sum_probs=155.0
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhh-cc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLR-GR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR-~~ 577 (703)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++...+...++ ..
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4999999999974 4699999999999999999999999999999999999999999999999999887766654 56
Q ss_pred eEEEccCCccccc-cHHHHhccCCCC-CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCC
Q 005302 578 IGFVGQEPKLFRM-DISSNISYGCTQ-DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRD 655 (703)
Q Consensus 578 I~~V~Qd~~LF~g-TI~eNI~~g~~~-~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~ 655 (703)
+|||+|++.+|.. |++||+.++... ...++++.++++..++.++ .+..+ ..||||||||++|||||+++
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~--~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-------LDSSA--GSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-------ccCCh--hhCCHHHHHHHHHHHHHHcC
Confidence 9999999998875 999999987421 1123455555555554322 12221 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchhHHHHhh
Q 005302 656 PTILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLSLYVLIC 700 (703)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~~~~~~~ 700 (703)
|++|||||||++||+.+.+.+.+.|+++ ..++-+-|-+....-+|
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~ 207 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLA 207 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999999999998765 24566777765544333
No 273
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-34 Score=328.96 Aligned_cols=191 Identities=25% Similarity=0.354 Sum_probs=150.4
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CcceEEECCEeCCCCChHH-hh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP--TNGQILIDGFPIKEVDIKW-LR 575 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p--~sG~I~idG~di~~i~~~~-lR 575 (703)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.+||.++...+... +|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999973 4699999999999999999999999999999999999996 8999999999998776543 56
Q ss_pred cceEEEccCCcccc-ccHHHHhccCCCC----CCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHH
Q 005302 576 GRIGFVGQEPKLFR-MDISSNISYGCTQ----DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAI 648 (703)
Q Consensus 576 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~~----~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaL 648 (703)
+.+|||+|++.+|. .|++|||.++... ..+.++..+ .+.+.+..+ |++..... ..||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 88999999999887 4999999986320 112222211 122333332 22222222 4799999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchhHHHHh
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLSLYVLI 699 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~~~~~~ 699 (703)
||||+.+|++||||||||+||+++...+.+.|+++ .-++-.-|-+....-+
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~ 209 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAI 209 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHh
Confidence 99999999999999999999999999999998775 2356667776544333
No 274
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.5e-34 Score=289.07 Aligned_cols=158 Identities=28% Similarity=0.379 Sum_probs=135.1
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCcceEEECCEeCCCCChHHh-hc
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL--YEPTNGQILIDGFPIKEVDIKWL-RG 576 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl--y~p~sG~I~idG~di~~i~~~~l-R~ 576 (703)
++++||+++|++ .++++|+||+|++||.+||+|+||||||||+++|+|+ ++|++|+|.+||+++.+.+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 478999999973 4699999999999999999999999999999999999 58999999999999998876654 56
Q ss_pred ceEEEccCCccccccH-HHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCC
Q 005302 577 RIGFVGQEPKLFRMDI-SSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRD 655 (703)
Q Consensus 577 ~I~~V~Qd~~LF~gTI-~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~ 655 (703)
.++||+|++.+|+++. ++|+ ... ...||||||||++|||||+++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l--------------------------~~~---------~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL--------------------------RYV---------NEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred cEEEeecChhhccCccHHHHH--------------------------hhc---------cccCCHHHHHHHHHHHHHhcC
Confidence 6999999999988654 4443 000 146999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 656 PTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
|++|+|||||++||+++.+.+.+.|++.. -++=.-|-...
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~ 166 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRL 166 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 99999999999999999999999998652 24556676653
No 275
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-34 Score=328.10 Aligned_cols=187 Identities=27% Similarity=0.341 Sum_probs=148.7
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHH-hhcc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW-LRGR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~-lR~~ 577 (703)
-|+++|++++|++ .++++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++...+... .|+.
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999973 46999999999999999999999999999999999999999999999999998877554 4567
Q ss_pred eEEEccCCccccc-cHHHHhccCCCC-----C---CCH----HHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHH
Q 005302 578 IGFVGQEPKLFRM-DISSNISYGCTQ-----D---IKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQ 644 (703)
Q Consensus 578 I~~V~Qd~~LF~g-TI~eNI~~g~~~-----~---~~~----e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQ 644 (703)
|+||+|++.+|.. |++||+.++... . .+. +++.++++..++. .-.+..+ .+|||||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-------~~~~~~~--~~LSgG~~q 152 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-------VDLDEKV--ANLSISHKQ 152 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-------CCcccch--hhCCHHHHH
Confidence 9999999998875 999999875310 0 111 2223333333321 1112222 479999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHHH
Q 005302 645 RIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLYV 697 (703)
Q Consensus 645 RIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~~ 697 (703)
|++|||||+++|++||||||||+||+.+.+.+.+.|+++. -++-.-|-+...-
T Consensus 153 rv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~ 209 (510)
T PRK09700 153 MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIR 209 (510)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999987753 2455667665443
No 276
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-34 Score=324.22 Aligned_cols=188 Identities=26% Similarity=0.395 Sum_probs=148.6
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC-hHHhhcc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD-IKWLRGR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~-~~~lR~~ 577 (703)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ .+.+|+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999974 46999999999999999999999999999999999999999999999999997654 3457889
Q ss_pred eEEEccCCccccc-cHHHHhccCCCC---C-CCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHH
Q 005302 578 IGFVGQEPKLFRM-DISSNISYGCTQ---D-IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIAR 650 (703)
Q Consensus 578 I~~V~Qd~~LF~g-TI~eNI~~g~~~---~-~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLAR 650 (703)
||||+|++.+|.+ |+.||+.++... . .+.++..+ .+.+.++.+ |++..... ..||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 9999999999875 999999986310 1 12222111 122333333 22211122 479999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHH
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLY 696 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~ 696 (703)
||+++|++|||||||++||+++.+.+.+.|+++. -++=.-|-+...
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~ 203 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEI 203 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 9999999999999999999999999999988652 355566765543
No 277
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.1e-34 Score=326.70 Aligned_cols=192 Identities=26% Similarity=0.344 Sum_probs=149.1
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHH-hhcc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW-LRGR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~-lR~~ 577 (703)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++...+... .|+.
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 3899999999973 46999999999999999999999999999999999999999999999999997665444 4678
Q ss_pred eEEEccCCcccc-ccHHHHhccCCCC-----CCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHH
Q 005302 578 IGFVGQEPKLFR-MDISSNISYGCTQ-----DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIA 649 (703)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~~-----~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLA 649 (703)
++||+|++.+|. -|++||+.++... ..+.++.++ .+.+.+..+ |+...... .+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 999999998886 4999999986320 112222111 122333332 22222222 47999999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHHHHhh
Q 005302 650 RAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLYVLIC 700 (703)
Q Consensus 650 RAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~~~~~ 700 (703)
|||+.+|++|||||||++||+++.+.+.+.|+++. .++=+-|-+...--+|
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~ 208 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEIC 208 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 99999999999999999999999999988887652 3566667665443333
No 278
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=4.6e-34 Score=294.48 Aligned_cols=171 Identities=27% Similarity=0.403 Sum_probs=135.3
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEc-cCCccc-cccH
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVG-QEPKLF-RMDI 592 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~-Qd~~LF-~gTI 592 (703)
.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... ...+|+.++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987653 356788999997 666775 5799
Q ss_pred HHHhccCCC-CCCCHHHH----HHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCC
Q 005302 593 SSNISYGCT-QDIKQQDI----EWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSA 667 (703)
Q Consensus 593 ~eNI~~g~~-~~~~~e~i----~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSa 667 (703)
+||+.+... ...+.++. .++++..++.+ ..++.+ ..||||||||++|||||+++|++|||||||++
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~--~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 183 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEE-------LLDTPV--RQLSLGQRMRAEIAAALLHEPEILFLDEPTIG 183 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-------HhcCCh--hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 999976421 12233332 33333333322 233333 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 668 LDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 668 LD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
||+++.+.+.+.|+++. -++=.-|-...
T Consensus 184 LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 216 (236)
T cd03267 184 LDVVAQENIRNFLKEYNRERGTTVLLTSHYMKD 216 (236)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 99999999999998752 34556676653
No 279
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1e-33 Score=290.83 Aligned_cols=166 Identities=31% Similarity=0.414 Sum_probs=133.9
Q ss_pred ceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCcccc-ccHHHHh
Q 005302 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFR-MDISSNI 596 (703)
Q Consensus 518 L~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-gTI~eNI 596 (703)
|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++.+.+.. .+||+|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-----~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPD-----RMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-----heEEecCcccCCCCCHHHHH
Confidence 5799999999999999999999999999999999999999999999999765432 489999999998 6999999
Q ss_pred ccCCC---CCCCHH----HHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Q 005302 597 SYGCT---QDIKQQ----DIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALD 669 (703)
Q Consensus 597 ~~g~~---~~~~~e----~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD 669 (703)
.++.. ...+++ ++.++++..++.+...+. + ..||||||||++|||||+++|++|||||||++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~--~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 146 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKR-------P--GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALD 146 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCC-------h--hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCC
Confidence 87410 122322 345555555554433221 1 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-----CcEEEEecchhHHH
Q 005302 670 AESEHNIKVATLSN-----GLLVKSLHFLSLYV 697 (703)
Q Consensus 670 ~~tE~~I~~al~~~-----~~~~~~~~~~~~~~ 697 (703)
+.+.+.+.+.|+++ ..++-+-|-+....
T Consensus 147 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 179 (230)
T TIGR01184 147 ALTRGNLQEELMQIWEEHRVTVLMVTHDVDEAL 179 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 99999999998764 23566667766543
No 280
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=321.13 Aligned_cols=189 Identities=26% Similarity=0.338 Sum_probs=148.0
Q ss_pred EEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHhhcceEE
Q 005302 502 FVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI-KWLRGRIGF 580 (703)
Q Consensus 502 ~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~-~~lR~~I~~ 580 (703)
++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++...+. +.+|+.++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 4799999973 469999999999999999999999999999999999999999999999999976553 456788999
Q ss_pred EccCCcccc-ccHHHHhccCCCC--C--CCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhc
Q 005302 581 VGQEPKLFR-MDISSNISYGCTQ--D--IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 581 V~Qd~~LF~-gTI~eNI~~g~~~--~--~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~ 653 (703)
|+|++.+|. .|++||+.++... . .+.++..+ .+.+.+..+ |++..... .+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998765 6999999976320 1 12222221 223344443 33333332 489999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchhHHHHhh
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLSLYVLIC 700 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~~~~~~~ 700 (703)
++|++|||||||++||+++.+.+.+.|+++ .-++-.-|-+....-+|
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~ 201 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLC 201 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC
Confidence 999999999999999999999999888765 23455667665443333
No 281
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.6e-33 Score=292.54 Aligned_cols=180 Identities=23% Similarity=0.323 Sum_probs=144.4
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
++++||+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|.+||.++.+.+...+++.++
T Consensus 1 ~~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~ 72 (248)
T PRK03695 1 MQLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRA 72 (248)
T ss_pred Ccccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheE
Confidence 357788874 17999999999999999999999999999999999995 4999999999999888888888999
Q ss_pred EEccCCc-cccccHHHHhccCCCCCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcC
Q 005302 580 FVGQEPK-LFRMDISSNISYGCTQDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR 654 (703)
Q Consensus 580 ~V~Qd~~-LF~gTI~eNI~~g~~~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r 654 (703)
||+|++. .+..|++||+.++.....+ .+++.++++..++.+...+. -..||||||||++|||||++
T Consensus 73 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 73 YLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRS---------VNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred EecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCC---------cccCCHHHHHHHHHHHHHhc
Confidence 9999975 5678999999987431122 23445555555544332221 14799999999999999997
Q ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHH
Q 005302 655 -------DPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLY 696 (703)
Q Consensus 655 -------~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~ 696 (703)
+|++|||||||++||+++.+.+.+.|+++. -++-.-|-+...
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~ 196 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHT 196 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 779999999999999999999999987653 345556766543
No 282
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.6e-33 Score=320.06 Aligned_cols=182 Identities=23% Similarity=0.225 Sum_probs=153.3
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 899999999974 35999999999999999999999999999999999999999999999999887777777788899
Q ss_pred EEccCCcc---------ccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005302 580 FVGQEPKL---------FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (703)
Q Consensus 580 ~V~Qd~~L---------F~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (703)
+|+|++.+ +..|++||+.++. ..++++.++++..++.+.....| ..||||||||++|||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~la~ 148 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV---KDPARCEQLAQQFGITALLDRRF---------KYLSTGETRKTLLCQ 148 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch---hHHHHHHHHHHHcCCHhhhhCCc---------ccCCHHHHHHHHHHH
Confidence 99998753 2468999987652 23566777777777765433222 469999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHH
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLY 696 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~ 696 (703)
||+++|++||||||||+||+++.+.+.+.|+++. -++-.-|-+...
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~ 198 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEI 198 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence 9999999999999999999999999999998762 345566766543
No 283
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-33 Score=326.12 Aligned_cols=193 Identities=30% Similarity=0.414 Sum_probs=152.4
Q ss_pred cEEEEEEEEEcCCC--------CCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC
Q 005302 499 RIDFVDVSFRYSSR--------EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD 570 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~--------~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~ 570 (703)
-++++||+++|+.+ ...++++|+||+|++||++|||||||||||||+|+|+|+++|++|+|.+||.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 49999999999731 0146999999999999999999999999999999999999999999999999998775
Q ss_pred hH---HhhcceEEEccCC--cccc-ccHHHHhccCCC-CC-----CCHHHHHHHHHHhchH-HHHHcCCCCcccccCCCC
Q 005302 571 IK---WLRGRIGFVGQEP--KLFR-MDISSNISYGCT-QD-----IKQQDIEWAAKQAYAH-DFIMSLPSGYETLVDDDL 637 (703)
Q Consensus 571 ~~---~lR~~I~~V~Qd~--~LF~-gTI~eNI~~g~~-~~-----~~~e~i~~aa~~A~l~-d~I~~LP~GydT~vGe~~ 637 (703)
.. .+|+.|+||+|++ .++. .|+.||+.+... .. ...+++.++++..++. +.....| ..
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~---------~~ 463 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP---------HE 463 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc---------cc
Confidence 43 4678999999998 3665 699999976310 01 1123455666666663 3322222 47
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHHHHhh
Q 005302 638 LSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLYVLIC 700 (703)
Q Consensus 638 LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~~~~~ 700 (703)
||||||||++|||||+.+|++||||||||+||+.+.++|.+.|+++. -++=.-|-+...--+|
T Consensus 464 LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~ 531 (623)
T PRK10261 464 FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERIS 531 (623)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 99999999999999999999999999999999999999999996542 3566667766543333
No 284
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2e-33 Score=319.90 Aligned_cols=187 Identities=27% Similarity=0.378 Sum_probs=147.1
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CcceEEECCEeCCCCChHH-hhc
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP--TNGQILIDGFPIKEVDIKW-LRG 576 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p--~sG~I~idG~di~~i~~~~-lR~ 576 (703)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.+||+++...+... +|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 4699999999999999999999999999999999999997 7999999999998877544 467
Q ss_pred ceEEEccCCccccc-cHHHHhccCCCC-----CCCHHHHHHHHHHhchHHHHHcCCC--Cc-ccccCCCCCChHHHHHHH
Q 005302 577 RIGFVGQEPKLFRM-DISSNISYGCTQ-----DIKQQDIEWAAKQAYAHDFIMSLPS--GY-ETLVDDDLLSGGQKQRIA 647 (703)
Q Consensus 577 ~I~~V~Qd~~LF~g-TI~eNI~~g~~~-----~~~~e~i~~aa~~A~l~d~I~~LP~--Gy-dT~vGe~~LSGGQkQRIa 647 (703)
.||||+|++.+|.. |+.||+.++... ..+.++..+ .+++.++.+.. .+ +..+ ..||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~--~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLRELQLDADNVTRPV--GDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHcCCCCCcccCch--hhCCHHHHHHHH
Confidence 89999999988874 999999886320 012222211 22333433321 11 1212 479999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHH
Q 005302 648 IARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLY 696 (703)
Q Consensus 648 LARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~ 696 (703)
|||||+++|++|||||||++||+++.+.+.+.|+++. -++-.-|-+...
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~ 204 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEV 204 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH
Confidence 9999999999999999999999999999999987652 345566765543
No 285
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=4e-33 Score=325.27 Aligned_cols=171 Identities=32% Similarity=0.475 Sum_probs=141.3
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC--cceEEECCEeCCCCChHHhhcceEEEccCCcccc-cc
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT--NGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFR-MD 591 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~--sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-gT 591 (703)
+.+|+|+|+++++||.+||+||||||||||+|+|+|+.+|+ +|+|.+||+++.. ..++++|||+|++.+|. .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 56999999999999999999999999999999999999985 8999999999842 45678999999999996 59
Q ss_pred HHHHhccCC----CCCCCHHHHHHHHHHhchHHHHHc--CCCCcccccCC---CCCChHHHHHHHHHHHhcCCCCEEEEe
Q 005302 592 ISSNISYGC----TQDIKQQDIEWAAKQAYAHDFIMS--LPSGYETLVDD---DLLSGGQKQRIAIARAILRDPTILILD 662 (703)
Q Consensus 592 I~eNI~~g~----~~~~~~e~i~~aa~~A~l~d~I~~--LP~GydT~vGe---~~LSGGQkQRIaLARAL~r~p~ILILD 662 (703)
++||+.+.. +.+.++++..+. +++.++. |++..||.+|+ ..||||||||++|||||+++|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILV-----AESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 999998752 112344332221 2333333 44456999987 489999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCC----cEEEEecchh
Q 005302 663 EATSALDAESEHNIKVATLSNG----LLVKSLHFLS 694 (703)
Q Consensus 663 EaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~ 694 (703)
||||+||+.++..+.+.|+++. -++-+.|-.+
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~ 267 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPS 267 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Confidence 9999999999999999998653 3566778765
No 286
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.2e-33 Score=288.13 Aligned_cols=169 Identities=31% Similarity=0.388 Sum_probs=132.7
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC----CcceEEECCEeCCCCChHHhhcceEEEccCCc-ccc--
Q 005302 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP----TNGQILIDGFPIKEVDIKWLRGRIGFVGQEPK-LFR-- 589 (703)
Q Consensus 517 vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p----~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~-LF~-- 589 (703)
+++|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.+||+++... +..++.++||+|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 58999999999999999999999999999999999999 899999999998764 333468999999995 344
Q ss_pred ccHHHHhccCCC-----CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCCEEEEe
Q 005302 590 MDISSNISYGCT-----QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILD 662 (703)
Q Consensus 590 gTI~eNI~~g~~-----~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ILILD 662 (703)
.|+.||+.+... ...+++++.++++..++.+ + ++.... ..||||||||++|||||+++|++||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 589999864311 0111334566666666542 1 122222 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 663 EATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 663 EaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
|||++||+++.+.+.+.|+++. -++=.-|-+..
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 188 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGV 188 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999999999999999887642 24555676553
No 287
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-33 Score=324.15 Aligned_cols=194 Identities=25% Similarity=0.366 Sum_probs=148.2
Q ss_pred cEEEEEEEEEcCCCC-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC----------
Q 005302 499 RIDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK---------- 567 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~---------- 567 (703)
-|+++|++++|+... ..++++|+||+|++||++|||||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 599999999996421 247999999999999999999999999999999999999999999999998652
Q ss_pred CCCh---HHhh-cceEEEccCC--cccc-ccHHHHhccCCC--CCCCH----HHHHHHHHHhchHHHHHcCCCCcccccC
Q 005302 568 EVDI---KWLR-GRIGFVGQEP--KLFR-MDISSNISYGCT--QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVD 634 (703)
Q Consensus 568 ~i~~---~~lR-~~I~~V~Qd~--~LF~-gTI~eNI~~g~~--~~~~~----e~i~~aa~~A~l~d~I~~LP~GydT~vG 634 (703)
+.+. ..+| +.||||+|++ .++. -|+.|||.++.. ...+. +++.++++..++.+. +....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHHh
Confidence 1222 2344 5799999998 5776 599999987421 01222 345555555554210 11111
Q ss_pred C--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHHHHhh
Q 005302 635 D--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLYVLIC 700 (703)
Q Consensus 635 e--~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~~~~~ 700 (703)
. ..||||||||++|||||+.+|++|||||||++||+.+.+++.+.++++. -++=.-|-+....-+|
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~a 236 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIA 236 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 2 4799999999999999999999999999999999999999999887653 2455667665543333
No 288
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=7.2e-33 Score=323.89 Aligned_cols=187 Identities=30% Similarity=0.434 Sum_probs=151.4
Q ss_pred cEEEEEEEEEcCCCC-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHh---
Q 005302 499 RIDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL--- 574 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~l--- 574 (703)
-|+++|++++|++.+ .+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||+++.+.+.+.+
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 2479999999999999999999999999999999999999999999999999999887654
Q ss_pred -hcceEEEccCCcccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005302 575 -RGRIGFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (703)
Q Consensus 575 -R~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (703)
|+.++||+|++.+|+ .|+.||+.+... ...+ ++++.++++..++.+.+.+.| ..||||||||++
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~---------~~LS~Gq~qrv~ 154 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP---------SQLSGGQQQRVS 154 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCc---------ccCCHHHHHHHH
Confidence 678999999999997 599999987421 0111 223344444444444333322 479999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchh
Q 005302 648 IARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLS 694 (703)
Q Consensus 648 LARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~ 694 (703)
|||||+++|++|||||||++||+++.+.+.+.++++. -.+=.-|-..
T Consensus 155 LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~ 205 (648)
T PRK10535 155 IARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ 205 (648)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 9999999999999999999999999999999987653 3344556554
No 289
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=1.7e-33 Score=264.89 Aligned_cols=134 Identities=45% Similarity=0.715 Sum_probs=123.1
Q ss_pred ceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCcccccc-HHHHh
Q 005302 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMD-ISSNI 596 (703)
Q Consensus 518 L~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gT-I~eNI 596 (703)
|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++|++|++.+|.+. +.||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999987 9999
Q ss_pred ccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCC
Q 005302 597 SYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATS 666 (703)
Q Consensus 597 ~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ILILDEaTS 666 (703)
..++++.++++..++.+ ..++.++. ..||||||||++|||||+++|++|||||||+
T Consensus 80 -------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 24677888888888765 24666665 5899999999999999999999999999997
No 290
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.1e-33 Score=329.14 Aligned_cols=187 Identities=25% Similarity=0.395 Sum_probs=151.7
Q ss_pred cEEEEEEEEEcCCC------CCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---cceEEECCEeCCCC
Q 005302 499 RIDFVDVSFRYSSR------EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT---NGQILIDGFPIKEV 569 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~------~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~---sG~I~idG~di~~i 569 (703)
+++|.++. +++.. .++++|+|+|++|+|||.+||+||||||||||+++|+|..+|. +|+|.+||.++.
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~-- 93 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-- 93 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC--
Confidence 45666665 54322 1467999999999999999999999999999999999999885 899999999986
Q ss_pred ChHHhhcceEEEccCCcccc-ccHHHHhccCCC----CCCCHHHHHHHHHHhchHHHHHc--CCCCcccccCC----CCC
Q 005302 570 DIKWLRGRIGFVGQEPKLFR-MDISSNISYGCT----QDIKQQDIEWAAKQAYAHDFIMS--LPSGYETLVDD----DLL 638 (703)
Q Consensus 570 ~~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~----~~~~~e~i~~aa~~A~l~d~I~~--LP~GydT~vGe----~~L 638 (703)
...+|+.+|||+||+.+|+ .||+|||.|+.. .+.+.++ +...+++.++. +++..||.+|+ +.|
T Consensus 94 -~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~L 167 (617)
T TIGR00955 94 -AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKE-----KRERVDEVLQALGLRKCANTRIGVPGRVKGL 167 (617)
T ss_pred -HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHH-----HHHHHHHHHHHcCchhcCcCccCCCCCCCCc
Confidence 3678999999999999995 599999987632 1223332 22234455554 44578999997 379
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc----EEEEecchh
Q 005302 639 SGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL----LVKSLHFLS 694 (703)
Q Consensus 639 SGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~----~~~~~~~~~ 694 (703)
|||||||++|||||+++|++|+||||||+||+.+...+.+.++++.. .+-+.|-.+
T Consensus 168 SgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~ 227 (617)
T TIGR00955 168 SGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPS 227 (617)
T ss_pred CcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999999999988643 456677764
No 291
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=9.8e-33 Score=316.34 Aligned_cols=192 Identities=26% Similarity=0.338 Sum_probs=149.0
Q ss_pred cEEEEEEEEEcCCC-CCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCCCChH
Q 005302 499 RIDFVDVSFRYSSR-EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKEVDIK 572 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~-~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-----~sG~I~idG~di~~i~~~ 572 (703)
-|+++||+++|+++ .+.++|+|+||+|++||.+||+||||||||||+|+|+|+++| ++|+|.+||.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999742 124799999999999999999999999999999999999997 799999999999877654
Q ss_pred H---hh-cceEEEccCCc--ccc-ccHHHHhccCC------CCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCC
Q 005302 573 W---LR-GRIGFVGQEPK--LFR-MDISSNISYGC------TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLS 639 (703)
Q Consensus 573 ~---lR-~~I~~V~Qd~~--LF~-gTI~eNI~~g~------~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LS 639 (703)
. +| +.||||+|++. ++. .|++||+.+.. +.....+++.++++..++.+.... .+..+ ..||
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----~~~~~--~~LS 158 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKR----LTDYP--HQLS 158 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH----HhhCC--cccC
Confidence 3 34 58999999985 443 58999986421 101122455566666665331100 01111 4799
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhHH
Q 005302 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSLY 696 (703)
Q Consensus 640 GGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~~ 696 (703)
||||||++|||||+.+|++|+||||||+||+++.+.+.+.|+++ .-++-.-|-+...
T Consensus 159 gGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~ 220 (529)
T PRK15134 159 GGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIV 220 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHH
Confidence 99999999999999999999999999999999999999998874 2356677776544
No 292
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=6.6e-33 Score=283.70 Aligned_cols=174 Identities=23% Similarity=0.231 Sum_probs=132.1
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
+.++|++.+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... ....+
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~ 94 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG 94 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc
Confidence 667788888863 5799999999999999999999999999999999999999999999999987421 11111
Q ss_pred EEccCCccccccHHHHhccCCC-CCCCHHH----HHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcC
Q 005302 580 FVGQEPKLFRMDISSNISYGCT-QDIKQQD----IEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR 654 (703)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~-~~~~~e~----i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r 654 (703)
+..+.|++||+.++.. ...+.++ +.++++..++.+ ..++.+ ..||||||||++|||||++
T Consensus 95 ------~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~--~~LSgG~~qrv~laral~~ 159 (224)
T cd03220 95 ------FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGD-------FIDLPV--KTYSSGMKARLAFAIATAL 159 (224)
T ss_pred ------CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-------hhhCCh--hhCCHHHHHHHHHHHHHhc
Confidence 2245799999987532 0122222 333333333332 233333 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHH
Q 005302 655 DPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLY 696 (703)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~ 696 (703)
+|++|||||||++||+++.+.+.+.|++.. -++=.-|-....
T Consensus 160 ~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~ 205 (224)
T cd03220 160 EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSI 205 (224)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 999999999999999999999999987642 345555765543
No 293
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-33 Score=272.29 Aligned_cols=168 Identities=29% Similarity=0.471 Sum_probs=138.4
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
+..+++|-+|++.+ ..+|+|+|++|++||.|+++||||||||||+|++.|+.+|+.|+|.+||.+|..-+.+ =|
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgae-----rg 77 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE-----RG 77 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcc-----ce
Confidence 56789999998754 5699999999999999999999999999999999999999999999999999876655 39
Q ss_pred EEccCCcccc-ccHHHHhccCCC-CCCCHHH----HHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 580 FVGQEPKLFR-MDISSNISYGCT-QDIKQQD----IEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~~~e~----i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
+|+|++-|+. -++.||+.||-. ..++.++ ..+.+..+++.|+=.+++ -.||||||||+.|||||.
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i---------~qLSGGmrQRvGiARALa 148 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYI---------WQLSGGMRQRVGIARALA 148 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccce---------EeecchHHHHHHHHHHhh
Confidence 9999999999 689999999852 1233322 222333334333211100 279999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLS 682 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~ 682 (703)
-+|+.|+||||.+|||+-|.+++++.+.+
T Consensus 149 ~eP~~LlLDEPfgAlDa~tRe~mQelLld 177 (259)
T COG4525 149 VEPQLLLLDEPFGALDALTREQMQELLLD 177 (259)
T ss_pred cCcceEeecCchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988754
No 294
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.5e-33 Score=318.42 Aligned_cols=189 Identities=31% Similarity=0.423 Sum_probs=148.0
Q ss_pred cEEEEEEEEEcCCC--------CCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC
Q 005302 499 RIDFVDVSFRYSSR--------EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD 570 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~--------~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~ 570 (703)
-|+++||+++|+.. .+.++|+|+||+|++||.+||+||||||||||+|+|+|++ |++|+|.+||.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 48999999999631 1246999999999999999999999999999999999998 58999999999998766
Q ss_pred hH---HhhcceEEEccCC--cccc-ccHHHHhccCCC---CCCC----HHHHHHHHHHhchH-HHHHcCCCCcccccCCC
Q 005302 571 IK---WLRGRIGFVGQEP--KLFR-MDISSNISYGCT---QDIK----QQDIEWAAKQAYAH-DFIMSLPSGYETLVDDD 636 (703)
Q Consensus 571 ~~---~lR~~I~~V~Qd~--~LF~-gTI~eNI~~g~~---~~~~----~e~i~~aa~~A~l~-d~I~~LP~GydT~vGe~ 636 (703)
.. .+|+.+|||+|++ .+|. .|+.||+.++.. ...+ ++++.++++..++. +...+. + .
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-------~--~ 424 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRY-------P--A 424 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcC-------C--c
Confidence 43 3578899999997 3665 599999987410 0111 23344445554443 122111 1 4
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhHHH
Q 005302 637 LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSLYV 697 (703)
Q Consensus 637 ~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~~~ 697 (703)
+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++ .-++-.-|-+....
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~ 490 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVR 490 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHH
Confidence 79999999999999999999999999999999999999999999754 23566778765543
No 295
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-33 Score=316.86 Aligned_cols=185 Identities=22% Similarity=0.346 Sum_probs=143.9
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHhhcc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI-KWLRGR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~-~~lR~~ 577 (703)
-|+++|+++.|. .+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 499999999762 28999999999999999999999999999999999999999999999999876543 456788
Q ss_pred eEEEccCC---cccc-ccHHHHhccCCCCC----------CCHHHHHHHHHHhchHHHHHcCC---CCcccccCCCCCCh
Q 005302 578 IGFVGQEP---KLFR-MDISSNISYGCTQD----------IKQQDIEWAAKQAYAHDFIMSLP---SGYETLVDDDLLSG 640 (703)
Q Consensus 578 I~~V~Qd~---~LF~-gTI~eNI~~g~~~~----------~~~e~i~~aa~~A~l~d~I~~LP---~GydT~vGe~~LSG 640 (703)
||||+|++ .+|. -|+.||+.++.... .+.++ ....+.+.++.+. +-.++.+ ..|||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~--~~LSg 412 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD-----EQRTAENQRELLALKCHSVNQNI--TELSG 412 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHH-----HHHHHHHHHHhcCCCCCCccCcc--ccCCh
Confidence 99999984 5776 59999998752100 01111 1112334444431 1122222 47999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchhH
Q 005302 641 GQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLSL 695 (703)
Q Consensus 641 GQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~~ 695 (703)
|||||++|||||+++|+|||||||||+||+.+.+.+.+.|+++ .-++-.-|-+..
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~ 471 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPE 471 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 9999999999999999999999999999999999999999764 235556666543
No 296
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-33 Score=318.02 Aligned_cols=190 Identities=25% Similarity=0.364 Sum_probs=146.6
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-CCcceEEECCEeCCCCCh-HHhhc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-PTNGQILIDGFPIKEVDI-KWLRG 576 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-p~sG~I~idG~di~~i~~-~~lR~ 576 (703)
.|+++||+++|+.+.+.++++|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.+||.++...+. +.+|+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4999999999963212469999999999999999999999999999999999999 599999999999875543 45678
Q ss_pred ceEEEccCC---ccc-cccHHHHhccCCCCC------CCHHHHHHHHHHhchHHHHHcCCCCccc-ccCC--CCCChHHH
Q 005302 577 RIGFVGQEP---KLF-RMDISSNISYGCTQD------IKQQDIEWAAKQAYAHDFIMSLPSGYET-LVDD--DLLSGGQK 643 (703)
Q Consensus 577 ~I~~V~Qd~---~LF-~gTI~eNI~~g~~~~------~~~e~i~~aa~~A~l~d~I~~LP~GydT-~vGe--~~LSGGQk 643 (703)
.++||+|++ .+| ..|+.||+.++.... .+.++ ....+++.++.+ |+++ .... ..||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA-----ELKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH-----HHHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 355 469999998752100 11111 112344555554 2322 1222 48999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 644 QRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
||++|||||..+|++||||||||+||+.+.+.+.+.|+++. -++-.-|-+..
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~ 467 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPE 467 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 99999999999999999999999999999999988877542 35556666543
No 297
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.1e-33 Score=262.12 Aligned_cols=178 Identities=30% Similarity=0.425 Sum_probs=144.3
Q ss_pred cEEEEEEEEEcCCCC-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHH---h
Q 005302 499 RIDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW---L 574 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~---l 574 (703)
-|++++++..-++.+ .-.||++|+|.|++||.+|||||||||||||+-+|.|+-+|++|+|.+.|+++..++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 478888888876543 356999999999999999999999999999999999999999999999999999988543 4
Q ss_pred h-cceEEEccCCccc-cccHHHHhccCCC--C--CCC-HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005302 575 R-GRIGFVGQEPKLF-RMDISSNISYGCT--Q--DIK-QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (703)
Q Consensus 575 R-~~I~~V~Qd~~LF-~gTI~eNI~~g~~--~--~~~-~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (703)
| +++|+|+|.-+|. +.|-.||+..-.. . ..+ .+.-.+-++.+|+.+-....| .+||||++||+|
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP---------~qLSGGEQQRVA 156 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP---------AQLSGGEQQRVA 156 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc---------cccCchHHHHHH
Confidence 4 6799999999986 4889999986431 0 111 112333444444443333333 579999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 648 IARAILRDPTILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 648 LARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
||||+.-.|+|||=||||-+||.+|-.+|.+.+..++-
T Consensus 157 iARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnr 194 (228)
T COG4181 157 LARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR 194 (228)
T ss_pred HHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999998876653
No 298
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.5e-32 Score=314.19 Aligned_cols=193 Identities=26% Similarity=0.435 Sum_probs=145.6
Q ss_pred cEEEEEEEEEcCC--CCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEEC-CEe---CCCCC--
Q 005302 499 RIDFVDVSFRYSS--REMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILID-GFP---IKEVD-- 570 (703)
Q Consensus 499 ~I~~~nVsF~Y~~--~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~id-G~d---i~~i~-- 570 (703)
-|+++||+++|++ +...++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4999999999963 112469999999999999999999999999999999999999999999996 643 33332
Q ss_pred -hHHhhcceEEEccCCcccc-ccHHHHhccCCCCCC----CHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHH
Q 005302 571 -IKWLRGRIGFVGQEPKLFR-MDISSNISYGCTQDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQ 642 (703)
Q Consensus 571 -~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~----~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQ 642 (703)
...+|+.||||+|++.+|. .|+.||+.++..... .++++.++++..++.+. ..+..... ..|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHHH
Confidence 2346778999999998887 599999986311011 12334444444444210 00001122 4799999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhHHH
Q 005302 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSLYV 697 (703)
Q Consensus 643 kQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~~~ 697 (703)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++ .-++=.-|-+....
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~ 492 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVL 492 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999643 23455667665433
No 299
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.3e-32 Score=314.70 Aligned_cols=185 Identities=25% Similarity=0.396 Sum_probs=143.6
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCcceEEEC---------------
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY--EPTNGQILID--------------- 562 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly--~p~sG~I~id--------------- 562 (703)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999963 46999999999999999999999999999999999996 7999999997
Q ss_pred --------CEeCC-------CCC---hHHhhcceEEEccC-Ccccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHhc
Q 005302 563 --------GFPIK-------EVD---IKWLRGRIGFVGQE-PKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAY 617 (703)
Q Consensus 563 --------G~di~-------~i~---~~~lR~~I~~V~Qd-~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~ 617 (703)
|.++. ..+ ...+|+.++||+|+ +.+|. .|++||+.++.. ...+ ++++.++++..+
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 33331 111 13467889999998 67776 599999986421 0122 234555666666
Q ss_pred hHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecc
Q 005302 618 AHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHF 692 (703)
Q Consensus 618 l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~ 692 (703)
+.+...+.| ..||||||||++|||||+++|++|+||||||+||+++.+.+.+.|+++. -++-.-|-
T Consensus 158 l~~~~~~~~---------~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd 228 (520)
T TIGR03269 158 LSHRITHIA---------RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228 (520)
T ss_pred ChhhhhcCc---------ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 544432211 4799999999999999999999999999999999999999988876652 24556676
Q ss_pred hhHH
Q 005302 693 LSLY 696 (703)
Q Consensus 693 ~~~~ 696 (703)
+...
T Consensus 229 ~~~~ 232 (520)
T TIGR03269 229 PEVI 232 (520)
T ss_pred HHHH
Confidence 6543
No 300
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.5e-32 Score=280.73 Aligned_cols=159 Identities=26% Similarity=0.410 Sum_probs=130.9
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCcc---ccccHHHHhccC
Q 005302 523 ISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKL---FRMDISSNISYG 599 (703)
Q Consensus 523 l~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~L---F~gTI~eNI~~g 599 (703)
|+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..|+.++||+|++.+ |+.|+.||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999999864 357889999999977 568999999765
Q ss_pred C---------CCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCH
Q 005302 600 C---------TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDA 670 (703)
Q Consensus 600 ~---------~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~ 670 (703)
. +...+++++.++++..++.++... .+ ..||||||||++|||||+++|++|||||||++||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~--~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADR-------PV--GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcC-------Ch--hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 2 101233567778888887655422 22 36999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 671 ESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 671 ~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
.+.+.+.+.|+++. -.+=+-|-+..
T Consensus 147 ~~~~~l~~~l~~~~~~~~tvii~sH~~~~ 175 (223)
T TIGR03771 147 PTQELLTELFIELAGAGTAILMTTHDLAQ 175 (223)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 99999999998653 24555676553
No 301
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=305.64 Aligned_cols=179 Identities=32% Similarity=0.447 Sum_probs=144.8
Q ss_pred cEEEEEEEEEcCCC--------CCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEe--CCC
Q 005302 499 RIDFVDVSFRYSSR--------EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFP--IKE 568 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~--------~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~d--i~~ 568 (703)
-++++|++.+|... ....+++||||+|++||++||||+||||||||.++|+|+.+|++|+|.++|.| ++.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 47899999999842 12468999999999999999999999999999999999999999999999987 333
Q ss_pred CChHHhhcceEEEccCCcc---ccccHHHHhccCC----CC--CCCHHHHHHHHHHhchHH-HHHcCCCCcccccCCCCC
Q 005302 569 VDIKWLRGRIGFVGQEPKL---FRMDISSNISYGC----TQ--DIKQQDIEWAAKQAYAHD-FIMSLPSGYETLVDDDLL 638 (703)
Q Consensus 569 i~~~~lR~~I~~V~Qd~~L---F~gTI~eNI~~g~----~~--~~~~e~i~~aa~~A~l~d-~I~~LP~GydT~vGe~~L 638 (703)
-+....|+++-+|+|||+= =..||.++|+--- .. ..-.+++.+..++.++.+ +..+.| ..|
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP---------~el 430 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP---------HEL 430 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc---------hhc
Confidence 3355688899999999984 2489999996321 10 111234666666666654 222222 479
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcE
Q 005302 639 SGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGLL 686 (703)
Q Consensus 639 SGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~ 686 (703)
|||||||+||||||..+|++||+|||||+||+-+.+.|.+.|+++..-
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e 478 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE 478 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887664
No 302
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-32 Score=272.30 Aligned_cols=178 Identities=27% Similarity=0.461 Sum_probs=145.2
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHH-hhcc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW-LRGR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~-lR~~ 577 (703)
-++++||+-.|+. ..+|++|||++++||+++++|++|+||||++|.|+|+.+|.+|+|.++|.|+...+... .|.-
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3789999999984 47999999999999999999999999999999999999999999999999999987554 5778
Q ss_pred eEEEccCCcccc-ccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcC
Q 005302 578 IGFVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILR 654 (703)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r 654 (703)
|+||||.-.+|. -|+.||+.+|.. ...+++ .+...+++--+-.|. +...... .+|||||+|-+||||||..
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~-~~~~~~----~~~~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAY-ARRDKE----AQERDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhh-cccccc----cccccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 999999999998 799999998732 111101 111112222222331 1222222 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 655 DPTILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
+|++|+|||||.+|-|.--++|.+.|+++++
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~ 184 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRK 184 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998875
No 303
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.8e-32 Score=312.22 Aligned_cols=200 Identities=22% Similarity=0.323 Sum_probs=147.7
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CcceEEECCEeCCCCCh-HHhhc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-TNGQILIDGFPIKEVDI-KWLRG 576 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-~sG~I~idG~di~~i~~-~~lR~ 576 (703)
-|+++|++++|+++.+..+++|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 49999999999532124699999999999999999999999999999999999996 89999999999875443 56788
Q ss_pred ceEEEccCC---cccc-ccHHHHhccCCCCCCCH-HHHHHHHHHhchHHHHHcCCCC---cccccCCCCCChHHHHHHHH
Q 005302 577 RIGFVGQEP---KLFR-MDISSNISYGCTQDIKQ-QDIEWAAKQAYAHDFIMSLPSG---YETLVDDDLLSGGQKQRIAI 648 (703)
Q Consensus 577 ~I~~V~Qd~---~LF~-gTI~eNI~~g~~~~~~~-e~i~~aa~~A~l~d~I~~LP~G---ydT~vGe~~LSGGQkQRIaL 648 (703)
+||||+|++ .+|. .|++||+.++....... ..+........+.+.++.+... .+..+ ..||||||||++|
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~LSgGqkqrv~l 414 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI--GRLSGGNQQKAVL 414 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc--ccCCHHHHHHHHH
Confidence 999999996 3665 69999998852100000 0000011112233444443211 12222 4799999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHHHHhh
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLYVLIC 700 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~~~~~ 700 (703)
||||+++|++|||||||++||+.+.+.+.+.|+++. -++-.-|-+....-+|
T Consensus 415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~ 470 (500)
T TIGR02633 415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLS 470 (500)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC
Confidence 999999999999999999999999999987776542 3556667665443333
No 304
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.98 E-value=9.2e-33 Score=268.33 Aligned_cols=186 Identities=29% Similarity=0.437 Sum_probs=148.8
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
+++++++.+|++. ..+++|+||+++.||.++|.||+|+||||+++.|.+|+.|++|+|++||.|..+ ++...|++||
T Consensus 2 l~v~~l~K~y~~~--v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccCH--HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 6889999999862 458999999999999999999999999999999999999999999999999987 5677999999
Q ss_pred EEccCCcccc-ccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCC--cccccCCCCCChHHHHHHHHHHHhcCCC
Q 005302 580 FVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSG--YETLVDDDLLSGGQKQRIAIARAILRDP 656 (703)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~G--ydT~vGe~~LSGGQkQRIaLARAL~r~p 656 (703)
+++-+.-|+. -|.+|||.||.. -.+..+-+-.++.+.+ ...+.++ .|+.+ .++|-|+|||++|||||.+||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~-L~~l~~~~~kari~~l---~k~l~l~~~~~rRv--~~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFAR-LNGLSRKEIKARIAEL---SKRLQLLEYLDRRV--GEFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHH-HhhhhhhHHHHHHHHH---HHHhChHHHHHHHH--hhhchhhHHHHHHHHHHhcCC
Confidence 9998777765 799999998842 1122222222333332 2222211 23333 369999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhCCc----EEEEecchh
Q 005302 657 TILILDEATSALDAESEHNIKVATLSNGL----LVKSLHFLS 694 (703)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~al~~~~~----~~~~~~~~~ 694 (703)
++++||||||+||.-+.+++.+-+.+++. .+-|-|-+.
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~ 194 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ 194 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH
Confidence 99999999999999999999998887655 455666554
No 305
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.98 E-value=6.8e-32 Score=338.38 Aligned_cols=188 Identities=23% Similarity=0.368 Sum_probs=154.4
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
..|+++||+++|+++ +.++++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.|+.. +...+|+.
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 469999999999643 2579999999999999999999999999999999999999999999999999975 56778999
Q ss_pred eEEEccCCcccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005302 578 IGFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (703)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (703)
+|+|+|++.+|+ .|++|||.++.. ...+ ++++.+.++..++.+...+ .+ .+||||||||++||||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~-------~~--~~LSGGqKQRLsLArA 1075 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNE-------EA--QDLSGGMQRKLSVAIA 1075 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-------Ch--hhCCHHHHHHHHHHHH
Confidence 999999999997 599999987521 1122 2345555555554333221 11 4799999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhHH
Q 005302 652 ILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSLY 696 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~~ 696 (703)
|+.+|++|+||||||+||+.+.+.+.+.|++.. -++-+-|.+..-
T Consensus 1076 Li~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea 1123 (2272)
T TIGR01257 1076 FVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEA 1123 (2272)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 999999999999999999999999999998763 345566776543
No 306
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.98 E-value=5.3e-32 Score=280.82 Aligned_cols=167 Identities=24% Similarity=0.272 Sum_probs=133.4
Q ss_pred EEcCCCCCcccceeeeEEec-----CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEE
Q 005302 507 FRYSSREMVPVLQHVNISVN-----PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFV 581 (703)
Q Consensus 507 F~Y~~~~~~~vL~~isl~I~-----~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V 581 (703)
|+|++. .+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.+||. .|+|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 689853 468999999997 69999999999999999999999999999999999984 69999
Q ss_pred ccCCc-cccccHHHHhccCCCCC-CCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEE
Q 005302 582 GQEPK-LFRMDISSNISYGCTQD-IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTIL 659 (703)
Q Consensus 582 ~Qd~~-LF~gTI~eNI~~g~~~~-~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~IL 659 (703)
+|++. .+++|++||+.++.... ...+...++++..++.+...+ .+ ..||||||||++|||||+++|+++
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~--~~LSgGe~qrv~iaraL~~~p~ll 137 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDR-------EV--PELSGGELQRVAIAACLSKDADIY 137 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhC-------Ch--hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99987 47899999998653211 112334555555555433221 11 479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhHH
Q 005302 660 ILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSLY 696 (703)
Q Consensus 660 ILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~~ 696 (703)
||||||++||+++...+.+.|+++ .-.+=.-|-+...
T Consensus 138 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~ 179 (246)
T cd03237 138 LLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMI 179 (246)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999999999999999999988775 2355566766543
No 307
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.98 E-value=4.2e-32 Score=282.89 Aligned_cols=181 Identities=23% Similarity=0.276 Sum_probs=137.3
Q ss_pred EEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEE-----------ECCEeCCCCCh
Q 005302 503 VDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQIL-----------IDGFPIKEVDI 571 (703)
Q Consensus 503 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~-----------idG~di~~i~~ 571 (703)
.||+|+|++. .++++|+| .+++||++||+||||||||||+|+|+|+++|++|+|. +||+++.+...
T Consensus 4 ~~~~~~y~~~--~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGPN--SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecCc--chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 4789999743 36999999 4999999999999999999999999999999999996 88999877644
Q ss_pred HHhhc--ceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005302 572 KWLRG--RIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (703)
Q Consensus 572 ~~lR~--~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (703)
+..|. .+++++|++.++..++.+|+...-.....++++.++++..++.+...+. ...||||||||++||
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LS~G~~qrv~la 151 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRN---------IDQLSGGELQRVAIA 151 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCC---------hhhCCHHHHHHHHHH
Confidence 33333 4788888777776555555543211111245566666666554332221 147999999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 650 RAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 650 RAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
||++++|++++||||||+||+++.+.+.+.|+++. -++=.-|-+..
T Consensus 152 ral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~ 201 (255)
T cd03236 152 AALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAV 201 (255)
T ss_pred HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 99999999999999999999999999988887653 24445565544
No 308
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.7e-31 Score=306.17 Aligned_cols=179 Identities=22% Similarity=0.347 Sum_probs=146.3
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. +.+
T Consensus 319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 5999999999974 46999999999999999999999999999999999999999999999882 579
Q ss_pred EEEccCCc--cc-cccHHHHhccCCCCCCCHHHHHHHHHHhchH-HHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcC
Q 005302 579 GFVGQEPK--LF-RMDISSNISYGCTQDIKQQDIEWAAKQAYAH-DFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR 654 (703)
Q Consensus 579 ~~V~Qd~~--LF-~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~-d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r 654 (703)
|||+|++. ++ ..|++||+.+......+++++.++++..++. +.... . -..||||||||++|||||++
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~--~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKK-------S--VKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcC-------c--ccccCHHHHHHHHHHHHHhc
Confidence 99999974 44 3699999976422123456677777777663 22221 1 14799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-EEEEecchhHHHHhh
Q 005302 655 DPTILILDEATSALDAESEHNIKVATLSNGL-LVKSLHFLSLYVLIC 700 (703)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-~~~~~~~~~~~~~~~ 700 (703)
+|++|||||||++||+.+...+.+.|++.++ ++-.-|-....--+|
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~ 502 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLA 502 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999999999999998754 455567665443333
No 309
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.2e-31 Score=262.50 Aligned_cols=187 Identities=28% Similarity=0.405 Sum_probs=157.7
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+.+|+|++-.+ +.+++++||+++|||.+||+||+|+|||||+|.|+|...|++|++.+||.|+.++....+-++-+
T Consensus 2 i~a~nls~~~~G---r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAG---RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEeec---ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 788999999875 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcc-ccccHHHHhccCCCCC-----CCHHH--HHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005302 580 FVGQEPKL-FRMDISSNISYGCTQD-----IKQQD--IEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (703)
Q Consensus 580 ~V~Qd~~L-F~gTI~eNI~~g~~~~-----~~~e~--i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (703)
+.+|+..| |+-|+.|=+.+|.-+. +.+++ ..+|...+++..+-.+. | ..|||||+||+.+||.
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~---y------~~LSGGEqQRVqlARv 149 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD---Y------RTLSGGEQQRVQLARV 149 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc---h------hhcCchHHHHHHHHHH
Confidence 99999998 9999999999987432 11333 45666666665553321 1 4699999999999999
Q ss_pred hcCC------CCEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchhHHHH
Q 005302 652 ILRD------PTILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLSLYVL 698 (703)
Q Consensus 652 L~r~------p~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~~~~~ 698 (703)
|.+- +++|+||||||+||..-.+.+.+..+++ ..++--||=|.|-..
T Consensus 150 LaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~ 206 (259)
T COG4559 150 LAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQ 206 (259)
T ss_pred HHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHH
Confidence 9863 4589999999999999999888877643 567778888766443
No 310
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=1.1e-31 Score=309.13 Aligned_cols=181 Identities=26% Similarity=0.357 Sum_probs=138.6
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
-|+++||+++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 6 ~l~i~~l~~~y~~~--~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPPK--KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCCC--CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 48999999999732 4699999999999999999999999999999999999999999999975 2469
Q ss_pred EEEccCCccccc-cHHHHhccCCC----------------CCCC---------HHHHHHHHHHh-------chHHHHHcC
Q 005302 579 GFVGQEPKLFRM-DISSNISYGCT----------------QDIK---------QQDIEWAAKQA-------YAHDFIMSL 625 (703)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~----------------~~~~---------~e~i~~aa~~A-------~l~d~I~~L 625 (703)
|||+|++.+++. |+.||+.++.. ...+ ..++.+.++.+ .+.+.+..+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999875 99999987521 0000 01122222211 122233332
Q ss_pred CCCcccccCC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-EEEEecchhH
Q 005302 626 PSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL-LVKSLHFLSL 695 (703)
Q Consensus 626 P~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-~~~~~~~~~~ 695 (703)
|++ .... ..||||||||++|||||+.+|++||||||||+||+++.+.+.+.|++... ++-.-|-+..
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~ 222 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYF 222 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 221 1111 47999999999999999999999999999999999999999999998753 3445565543
No 311
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.97 E-value=1.1e-31 Score=256.27 Aligned_cols=127 Identities=33% Similarity=0.553 Sum_probs=114.6
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
++++|++++|++ .++++|+||++++||.++|+||||||||||+++|+|+++|++|+|.+||. ..++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 478999999974 36999999999999999999999999999999999999999999999994 4799
Q ss_pred EEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEE
Q 005302 580 FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTIL 659 (703)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~IL 659 (703)
|++| |||||+||++|||||+++|+++
T Consensus 67 ~~~~------------------------------------------------------lS~G~~~rv~laral~~~p~il 92 (144)
T cd03221 67 YFEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNLL 92 (144)
T ss_pred EEcc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhCCc-EEEEecchh
Q 005302 660 ILDEATSALDAESEHNIKVATLSNGL-LVKSLHFLS 694 (703)
Q Consensus 660 ILDEaTSaLD~~tE~~I~~al~~~~~-~~~~~~~~~ 694 (703)
||||||++||+++...+.+.+++++. .+=.-|-..
T Consensus 93 llDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~ 128 (144)
T cd03221 93 LLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRY 128 (144)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 99999999999999999999998743 233344443
No 312
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=1.8e-31 Score=307.35 Aligned_cols=183 Identities=27% Similarity=0.394 Sum_probs=142.8
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
-|+++||+++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~~--~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPPK--KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCCC--CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 48999999999732 4699999999999999999999999999999999999999999999975 2479
Q ss_pred EEEccCCcccc-ccHHHHhccCCCC----------------CC-C--------HHHHHHHHHHhchHH-------HHHcC
Q 005302 579 GFVGQEPKLFR-MDISSNISYGCTQ----------------DI-K--------QQDIEWAAKQAYAHD-------FIMSL 625 (703)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~~----------------~~-~--------~e~i~~aa~~A~l~d-------~I~~L 625 (703)
|||+|++.+|. .|++|||.++... .. + .+++.++++.++.++ .+..+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999986 5999999875210 00 1 124555555555432 33332
Q ss_pred CCC-cccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-EEEEecchhHH
Q 005302 626 PSG-YETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL-LVKSLHFLSLY 696 (703)
Q Consensus 626 P~G-ydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-~~~~~~~~~~~ 696 (703)
... .+..+ .+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|++.+. ++-.-|-....
T Consensus 151 ~l~~~~~~~--~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~ 221 (552)
T TIGR03719 151 RCPPWDADV--TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFL 221 (552)
T ss_pred CCCcccCch--hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence 111 12221 48999999999999999999999999999999999999999999987643 34455655443
No 313
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=8.2e-32 Score=336.25 Aligned_cols=186 Identities=25% Similarity=0.383 Sum_probs=154.0
Q ss_pred cEEEEEEEEEcCCC-CCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC---CCcceEEECCEeCCCCChHHh
Q 005302 499 RIDFVDVSFRYSSR-EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE---PTNGQILIDGFPIKEVDIKWL 574 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~-~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~---p~sG~I~idG~di~~i~~~~l 574 (703)
.++++||+++|+.+ +++.+|+|+|++|+|||.+||+||||||||||+|+|+|+.+ |++|+|++||+|+. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 37999999999632 23579999999999999999999999999999999999998 78999999999985 257
Q ss_pred hcceEEEccCCc-cccccHHHHhccCC----CCCCCHH----HHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHH
Q 005302 575 RGRIGFVGQEPK-LFRMDISSNISYGC----TQDIKQQ----DIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (703)
Q Consensus 575 R~~I~~V~Qd~~-LF~gTI~eNI~~g~----~~~~~~e----~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (703)
|+.+|||+|++. ++..|++||+.++. +.+.+++ ++.++++..++. +-.|+.+|+ .+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-------SYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhCCCeeCCCCCCCCHHHh
Confidence 899999999875 56689999999752 1123332 345555555553 346888886 48999999
Q ss_pred HHHHHHHHhcCCCC-EEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 644 QRIAIARAILRDPT-ILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 644 QRIaLARAL~r~p~-ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
||++|||||+.+|+ ||+||||||+||+.+...|.+.|+++. -++-+.|-++.
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~ 964 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSA 964 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCH
Confidence 99999999999997 999999999999999999999998762 45667787663
No 314
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=2e-31 Score=297.34 Aligned_cols=176 Identities=27% Similarity=0.302 Sum_probs=139.6
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.++++|++|+|+++...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999865445799999999999999999999999999999999999999999999999762
Q ss_pred EEEccCCccc-cccHHHHhccCCC-CCCCHHH----HHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 579 GFVGQEPKLF-RMDISSNISYGCT-QDIKQQD----IEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 579 ~~V~Qd~~LF-~gTI~eNI~~g~~-~~~~~e~----i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
++.+++.++ ..|++|||.++.. ...+.++ +.++++..++.+++.+.| ..||||||||++|||||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~---------~~LSGGQrQRVaLArAL 158 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPV---------KTYSSGMKSRLGFAISV 158 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCc---------ccCCHHHHHHHHHHHHH
Confidence 122233333 3599999987421 1223333 445666677766554422 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchhHH
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLSLY 696 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~~~ 696 (703)
+.+|++|||||||++||+.+.+.+.+.|+++ .-++-.-|-+...
T Consensus 159 ~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i 206 (549)
T PRK13545 159 HINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQV 206 (549)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 9999999999999999999999999998765 2355667776644
No 315
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=4.2e-32 Score=277.62 Aligned_cols=148 Identities=30% Similarity=0.447 Sum_probs=128.9
Q ss_pred cEEEEEEEEEcCCCC------CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChH
Q 005302 499 RIDFVDVSFRYSSRE------MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK 572 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~------~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~ 572 (703)
-++++|++..|+... ...+++||||+|++||+++|||+|||||||+.++|+||++|++|+|+++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 378999999997532 136899999999999999999999999999999999999999999999999988876
Q ss_pred HhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHH-HHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005302 573 WLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDF-IMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (703)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~-I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (703)
. +.-.+++.+.++.+|+.++ ..+.| ..|||||||||+||||
T Consensus 82 ----------------------------~-~~~~~~v~elL~~Vgl~~~~~~ryP---------helSGGQrQRi~IARA 123 (268)
T COG4608 82 ----------------------------K-EERRERVLELLEKVGLPEEFLYRYP---------HELSGGQRQRIGIARA 123 (268)
T ss_pred ----------------------------h-hHHHHHHHHHHHHhCCCHHHhhcCC---------cccCchhhhhHHHHHH
Confidence 1 3346789999999998763 33433 4699999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcE
Q 005302 652 ILRDPTILILDEATSALDAESEHNIKVATLSNGLL 686 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~ 686 (703)
|.-+|++++.|||||+||.-.+++|.+-+++++..
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~ 158 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE 158 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876654
No 316
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.7e-31 Score=306.23 Aligned_cols=182 Identities=21% Similarity=0.400 Sum_probs=140.0
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|. ..||
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999974 46999999999999999999999999999999999999999999999972 4699
Q ss_pred EEccCCcccc-ccHHHHhccCCCC---------------CCCHHH---HHHH----------HHHhchHHHHHcCCCCcc
Q 005302 580 FVGQEPKLFR-MDISSNISYGCTQ---------------DIKQQD---IEWA----------AKQAYAHDFIMSLPSGYE 630 (703)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~~---------------~~~~e~---i~~a----------a~~A~l~d~I~~LP~Gyd 630 (703)
||+|++.+|. -|++||+.++... ....+. +.+. .....+++.+..+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 9999998876 4999999875210 000000 0000 0012233444443 332
Q ss_pred cccC-C--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-cEEEEecchhHHH
Q 005302 631 TLVD-D--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG-LLVKSLHFLSLYV 697 (703)
Q Consensus 631 T~vG-e--~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-~~~~~~~~~~~~~ 697 (703)
.... . ..||||||||++|||||+.+|++|+|||||++||+++.+.+.+.|++.+ -++=.-|-+...-
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~ 216 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLN 216 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 2221 1 4799999999999999999999999999999999999999999998754 3566777766543
No 317
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=2.4e-32 Score=280.87 Aligned_cols=179 Identities=35% Similarity=0.497 Sum_probs=154.3
Q ss_pred cEEEEEEEEEcCCCCC---------------------cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc
Q 005302 499 RIDFVDVSFRYSSREM---------------------VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG 557 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~---------------------~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG 557 (703)
.|+++||+.-++.++. .--++|+||+|+.||...|.|-||||||||++++.||++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4777888777754321 1236799999999999999999999999999999999999999
Q ss_pred eEEECCEeCCCCChHHh----hcceEEEccCCcccc-ccHHHHhccCCC-CCC----CHHHHHHHHHHhchHHHHHcCCC
Q 005302 558 QILIDGFPIKEVDIKWL----RGRIGFVGQEPKLFR-MDISSNISYGCT-QDI----KQQDIEWAAKQAYAHDFIMSLPS 627 (703)
Q Consensus 558 ~I~idG~di~~i~~~~l----R~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~----~~e~i~~aa~~A~l~d~I~~LP~ 627 (703)
+|++||.|+..++.+.+ |+.+++|+|.--||. .||.||..||-+ ... .+++..++++.+|+++|-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 99999999999997776 467999999999987 899999999963 123 3355678899999999988777
Q ss_pred CcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcE
Q 005302 628 GYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGLL 686 (703)
Q Consensus 628 GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~ 686 (703)
+.||||+|||+.|||||..+|+||++|||.|||||--....|+-|.++.+-
T Consensus 163 --------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~ 213 (386)
T COG4175 163 --------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK 213 (386)
T ss_pred --------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHH
Confidence 459999999999999999999999999999999999999999988876543
No 318
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=8.7e-32 Score=306.56 Aligned_cols=183 Identities=26% Similarity=0.434 Sum_probs=143.0
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHhhcc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI-KWLRGR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~-~~lR~~ 577 (703)
.|+++||++ ++++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++...+. +.+|+.
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 489999973 37999999999999999999999999999999999999999999999999987664 346788
Q ss_pred eEEEccCC---cc-ccccHHHHhccCCCCC-------CCHHHHHHHHHHhchHHHHHcCCCCcc-cccCC--CCCChHHH
Q 005302 578 IGFVGQEP---KL-FRMDISSNISYGCTQD-------IKQQDIEWAAKQAYAHDFIMSLPSGYE-TLVDD--DLLSGGQK 643 (703)
Q Consensus 578 I~~V~Qd~---~L-F~gTI~eNI~~g~~~~-------~~~e~i~~aa~~A~l~d~I~~LP~Gyd-T~vGe--~~LSGGQk 643 (703)
||||+|++ .+ ...|++||+.++.... .+.++. ...+.+.+..+ |+. -.... ..||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999996 34 4579999998752100 111111 11233444443 232 11222 47999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHH
Q 005302 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLY 696 (703)
Q Consensus 644 QRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~ 696 (703)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. -++-.-|-+...
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~ 458 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEV 458 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 99999999999999999999999999999999999998764 345566766543
No 319
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=3.7e-31 Score=277.20 Aligned_cols=175 Identities=22% Similarity=0.303 Sum_probs=134.9
Q ss_pred cEEEEEEEEEcCCC-----------------CCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEE
Q 005302 499 RIDFVDVSFRYSSR-----------------EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILI 561 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~-----------------~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~i 561 (703)
+|+++||+..|... ...++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 46777776665431 2356999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCChHHhhcceEEEccCCcccc-ccHHHHhccCCC-CCCCHHHHH----HHHHHhchHHHHHcCCCCcccccCC
Q 005302 562 DGFPIKEVDIKWLRGRIGFVGQEPKLFR-MDISSNISYGCT-QDIKQQDIE----WAAKQAYAHDFIMSLPSGYETLVDD 635 (703)
Q Consensus 562 dG~di~~i~~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~~e~i~----~aa~~A~l~d~I~~LP~GydT~vGe 635 (703)
||. ++++.|++.+++ .|+.||++++.. ...+.++.. ++++..++.+++.. . .
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~--~ 141 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQ-------P--V 141 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-------C--c
Confidence 995 456778876654 699999986421 123344433 34444444443322 1 1
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchhH
Q 005302 636 DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLSL 695 (703)
Q Consensus 636 ~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~~ 695 (703)
..||||||||++||||++++|++|||||||++||+++.+.+.+.+.+. .-++-.-|-+..
T Consensus 142 ~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~ 205 (264)
T PRK13546 142 KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQ 205 (264)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 479999999999999999999999999999999999999999988654 235666676554
No 320
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=8.5e-32 Score=305.89 Aligned_cols=185 Identities=25% Similarity=0.269 Sum_probs=142.7
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CcceEEECCEeCCC-CChHHhhc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-TNGQILIDGFPIKE-VDIKWLRG 576 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-~sG~I~idG~di~~-i~~~~lR~ 576 (703)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+.+| ++|+|.+||.++.. .....+|+
T Consensus 260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 5999999999974 4699999999999999999999999999999999998876 69999999987642 23345688
Q ss_pred ceEEEccCCcccc---ccHHHHhccCCC------CCCC---HHHHHHHHHHhchHH-HHHcCCCCcccccCCCCCChHHH
Q 005302 577 RIGFVGQEPKLFR---MDISSNISYGCT------QDIK---QQDIEWAAKQAYAHD-FIMSLPSGYETLVDDDLLSGGQK 643 (703)
Q Consensus 577 ~I~~V~Qd~~LF~---gTI~eNI~~g~~------~~~~---~e~i~~aa~~A~l~d-~I~~LP~GydT~vGe~~LSGGQk 643 (703)
.||||+|++.++. .|+.||+.++.. .... ++++.++++..++.+ .. +..+ ..||||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~--~~LSgGq~ 407 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA-------DAPF--HSLSWGQQ 407 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc-------cCch--hhCCHHHH
Confidence 9999999987643 467777653210 0111 234455555554432 11 1111 47999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----c-EEEEecchhH
Q 005302 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG----L-LVKSLHFLSL 695 (703)
Q Consensus 644 QRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~-~~~~~~~~~~ 695 (703)
||++|||||+++|++|||||||++||+++.+.+.+.|+++. . ++=.-|-...
T Consensus 408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~ 464 (490)
T PRK10938 408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAED 464 (490)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhh
Confidence 99999999999999999999999999999999999887752 2 4556676554
No 321
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.5e-31 Score=304.66 Aligned_cols=184 Identities=26% Similarity=0.348 Sum_probs=141.6
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC-hHHhhcc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD-IKWLRGR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~-~~~lR~~ 577 (703)
.++++|++++ .+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++.... .+..|+.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999832 4899999999999999999999999999999999999999999999999987543 3456789
Q ss_pred eEEEccCCc---cc-cccHHHHhccCCCCCC-------CHHHHHHHHHHhchHHHHHcCCCCccc-ccCC--CCCChHHH
Q 005302 578 IGFVGQEPK---LF-RMDISSNISYGCTQDI-------KQQDIEWAAKQAYAHDFIMSLPSGYET-LVDD--DLLSGGQK 643 (703)
Q Consensus 578 I~~V~Qd~~---LF-~gTI~eNI~~g~~~~~-------~~e~i~~aa~~A~l~d~I~~LP~GydT-~vGe--~~LSGGQk 643 (703)
++||+|++. +| ..|+.||+.++..... +..+- ...+.+.+..+ |++. .... ..||||||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSL--NIKTPSREQLIMNLSGGNQ 402 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhc--CcccCCccCccccCCHHHH
Confidence 999999972 54 4899999987531110 11111 11233444443 2221 1122 48999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchhHH
Q 005302 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLSLY 696 (703)
Q Consensus 644 QRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~~~ 696 (703)
||++|||||+.+|++|||||||++||+.+.+++.+.|+++ .-++=.-|-+...
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~ 459 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEV 459 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence 9999999999999999999999999999999999998654 2455566766543
No 322
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=5.5e-32 Score=258.13 Aligned_cols=174 Identities=33% Similarity=0.479 Sum_probs=145.2
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC---------
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV--------- 569 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i--------- 569 (703)
.++++|+..+|+.. .||++|||+-++|+.++|+|.|||||||+++++.=+-.|++|+|.+||..|+--
T Consensus 6 ~l~v~dlHK~~G~~---eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcccc---hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 58999999999864 499999999999999999999999999999999999999999999999987421
Q ss_pred ----ChHHhhcceEEEccCCcccc-ccHHHHhc------cCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCC
Q 005302 570 ----DIKWLRGRIGFVGQEPKLFR-MDISSNIS------YGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLL 638 (703)
Q Consensus 570 ----~~~~lR~~I~~V~Qd~~LF~-gTI~eNI~------~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~L 638 (703)
..+.+|.+.|+|+|.-.|.+ .|+.||+. +|.+++.-.|+-+..+.++|+.|--..-| ..|
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP---------~~L 153 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP---------AHL 153 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc---------ccc
Confidence 25678999999999999987 89999996 33221112234444566677766544433 469
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 639 SGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 639 SGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
||||+||.+|||||.-+|+++++||||||||++---++.+.++++.
T Consensus 154 SGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LA 199 (256)
T COG4598 154 SGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLA 199 (256)
T ss_pred CchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888887776654
No 323
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3.7e-31 Score=292.36 Aligned_cols=178 Identities=33% Similarity=0.453 Sum_probs=148.8
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHH-hhcc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW-LRGR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~-lR~~ 577 (703)
-++++|++.+|++ .++|+|+||++.+||+.|++|++|+|||||+|+|+|.|+|++|+|.+||++..-.++.+ ...-
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4889999999985 57999999999999999999999999999999999999999999999999998666555 4566
Q ss_pred eEEEccCCcccc-ccHHHHhccCCCCC-----CCHHHHHHHHHHhchHHHHHcCCC--CcccccCCCCCChHHHHHHHHH
Q 005302 578 IGFVGQEPKLFR-MDISSNISYGCTQD-----IKQQDIEWAAKQAYAHDFIMSLPS--GYETLVDDDLLSGGQKQRIAIA 649 (703)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~~~-----~~~e~i~~aa~~A~l~d~I~~LP~--GydT~vGe~~LSGGQkQRIaLA 649 (703)
|+.|.||..|+. -||+|||.+|+++. .|..++++.|+. .+..+-. ..++.| .+||+||||-++||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~-----~l~~lg~~~~~~~~v--~~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARE-----LLARLGLDIDPDTLV--GDLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHH-----HHHHcCCCCChhhhh--hhCCHHHHHHHHHH
Confidence 999999999986 79999999997532 345555554443 2222211 134444 37999999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcE
Q 005302 650 RAILRDPTILILDEATSALDAESEHNIKVATLSNGLL 686 (703)
Q Consensus 650 RAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~ 686 (703)
|||.++++|||||||||+|+....+++.+.++++..-
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~ 194 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQ 194 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999888888888877643
No 324
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=8.4e-31 Score=328.61 Aligned_cols=189 Identities=20% Similarity=0.318 Sum_probs=154.0
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
.-|+++||+++|+++ ..++++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.++.+ +....|+.
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 359999999999753 2579999999999999999999999999999999999999999999999999975 45678899
Q ss_pred eEEEccCCcccc-ccHHHHhccCCC-CCCCH----HHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005302 578 IGFVGQEPKLFR-MDISSNISYGCT-QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (703)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~~----e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (703)
|||++|++.++. -|++||+.+... ...+. +.+.++++..++.++..+.+ ..||||||||++||||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~---------~~LSGGqKqRLslA~A 2084 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA---------GTYSGGNKRKLSTAIA 2084 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh---------hhCCHHHHHHHHHHHH
Confidence 999999999986 699999986311 12222 23445566666655433221 4799999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHHH
Q 005302 652 ILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLYV 697 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~~ 697 (703)
|+.+|+||+||||||+||+.+.+.+.+.|+++. -++-+-|-+..--
T Consensus 2085 Li~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e 2134 (2272)
T TIGR01257 2085 LIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECE 2134 (2272)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 999999999999999999999999999987752 2455667655433
No 325
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.97 E-value=4.5e-31 Score=293.45 Aligned_cols=179 Identities=28% Similarity=0.405 Sum_probs=144.2
Q ss_pred cEEEEEEEEEcCCCCC-cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC----cceEEECCEeCCCCChHH
Q 005302 499 RIDFVDVSFRYSSREM-VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT----NGQILIDGFPIKEVDIKW 573 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~----sG~I~idG~di~~i~~~~ 573 (703)
-++++|++..|..... ..+++||||+|++||.+||||+|||||||+++.|+|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4899999999976422 25999999999999999999999999999999999999998 899999999998888765
Q ss_pred h---h-cceEEEccCCc-cccc--cHHHHhc----cCCC--CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCCh
Q 005302 574 L---R-GRIGFVGQEPK-LFRM--DISSNIS----YGCT--QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSG 640 (703)
Q Consensus 574 l---R-~~I~~V~Qd~~-LF~g--TI~eNI~----~g~~--~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSG 640 (703)
. | +.||+|+|||. .++- ||.+-|+ .... .+...++..+..+++++.+-... +.| ...|||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~--~~y-----PheLSG 157 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR--DRY-----PHQLSG 157 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh--ccC-----CcccCc
Confidence 4 3 67999999986 4653 5655553 2110 12234556667777776554333 000 147999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 641 GQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 641 GQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
|||||+.||+||..+|++||+||||.+||+.+.++|.+.|+++.
T Consensus 158 G~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~ 201 (539)
T COG1123 158 GMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQ 201 (539)
T ss_pred hHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998776
No 326
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2e-30 Score=250.53 Aligned_cols=139 Identities=42% Similarity=0.668 Sum_probs=126.0
Q ss_pred EEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEE
Q 005302 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF 580 (703)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~ 580 (703)
+++|++|+|++ .++++++||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.....+++.++|
T Consensus 1 ~~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~ 77 (157)
T cd00267 1 EIENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGY 77 (157)
T ss_pred CeEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEE
Confidence 36899999974 369999999999999999999999999999999999999999999999999998878888999999
Q ss_pred EccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEE
Q 005302 581 VGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILI 660 (703)
Q Consensus 581 V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILI 660 (703)
++| |||||+||++||||++.+|++++
T Consensus 78 ~~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 78 VPQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred Eee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 999 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHH
Q 005302 661 LDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLY 696 (703)
Q Consensus 661 LDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~ 696 (703)
|||||++||.++...+.+.+++.. -++=.-|-....
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 143 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELA 143 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 999999999999999999987653 345555665543
No 327
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4e-31 Score=267.78 Aligned_cols=159 Identities=28% Similarity=0.445 Sum_probs=146.1
Q ss_pred eeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC----CCChHHhhcceEEEccCCcccc-ccHH
Q 005302 519 QHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK----EVDIKWLRGRIGFVGQEPKLFR-MDIS 593 (703)
Q Consensus 519 ~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~----~i~~~~lR~~I~~V~Qd~~LF~-gTI~ 593 (703)
=++||+.+.-..+||-|+||||||||+|++.|+..|++|.|.+||.-+. .+...-.+++||||+||..||. -|++
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 3589999988999999999999999999999999999999999998764 4556777999999999999998 8999
Q ss_pred HHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHH
Q 005302 594 SNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESE 673 (703)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE 673 (703)
-|++||.. ..+.++..+++.+-|+.....++| .+||||+|||+||+|||+.+|++|+||||.|+||....
T Consensus 95 gNL~YG~~-~~~~~~fd~iv~lLGI~hLL~R~P---------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 95 GNLRYGMW-KSMRAQFDQLVALLGIEHLLDRYP---------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred cchhhhhc-ccchHhHHHHHHHhCcHHHHhhCC---------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 99999976 667889999999999999999888 45999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEE
Q 005302 674 HNIKVATLSNGLLV 687 (703)
Q Consensus 674 ~~I~~al~~~~~~~ 687 (703)
++|+--|+++.+-.
T Consensus 165 ~EilpylERL~~e~ 178 (352)
T COG4148 165 REILPYLERLRDEI 178 (352)
T ss_pred hHHHHHHHHHHHhc
Confidence 99999999887654
No 328
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=3.4e-30 Score=296.69 Aligned_cols=177 Identities=23% Similarity=0.320 Sum_probs=138.4
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ ++ .|
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EE
Confidence 5999999999974 4699999999999999999999999999999999999999999999965 21 59
Q ss_pred EEEccCCc-ccc-ccHHHHhccCCCC-CCC--HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 579 GFVGQEPK-LFR-MDISSNISYGCTQ-DIK--QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 579 ~~V~Qd~~-LF~-gTI~eNI~~g~~~-~~~--~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
|||+|++. ++. .|+.||+.++... ..+ +++..++++..++.+.. .+..+ ..||||||||++|||||+
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~--~~LSgGe~qrv~la~al~ 459 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD------QQKKV--GQLSGGERNRVHLAKTLK 459 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH------hcCch--hhCCHHHHHHHHHHHHHh
Confidence 99999963 554 6999999886320 111 22233333333332110 11111 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-cEEEEecchhHHH
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNG-LLVKSLHFLSLYV 697 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-~~~~~~~~~~~~~ 697 (703)
.+|++|||||||++||+.+.+.+.+.|++.+ .++-+-|-.....
T Consensus 460 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~ 504 (552)
T TIGR03719 460 SGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLD 504 (552)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence 9999999999999999999999999999874 3455666655433
No 329
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=4.3e-30 Score=296.08 Aligned_cols=176 Identities=24% Similarity=0.331 Sum_probs=138.3
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ ++ .|
T Consensus 324 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~i 389 (556)
T PRK11819 324 VIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------KL 389 (556)
T ss_pred EEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------EE
Confidence 5999999999974 4699999999999999999999999999999999999999999999965 21 59
Q ss_pred EEEccCC-cccc-ccHHHHhccCCCC-C--CCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 579 GFVGQEP-KLFR-MDISSNISYGCTQ-D--IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 579 ~~V~Qd~-~LF~-gTI~eNI~~g~~~-~--~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
|||+|++ .++. -|+.||+.++... . ..+++..++++..++.+. ..+..+ ..||||||||++|||||+
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~--~~LSgG~~qrv~la~al~ 461 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG------DQQKKV--GVLSGGERNRLHLAKTLK 461 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh------HhcCch--hhCCHHHHHHHHHHHHHh
Confidence 9999996 5554 5999999876320 1 112333334443333211 012211 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-EEEEecchhHH
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNGL-LVKSLHFLSLY 696 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-~~~~~~~~~~~ 696 (703)
.+|++|||||||++||+.+...+.+.|++.++ ++=.-|-+..-
T Consensus 462 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~ 505 (556)
T PRK11819 462 QGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFL 505 (556)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence 99999999999999999999999999998743 45555655543
No 330
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=3.1e-30 Score=321.47 Aligned_cols=188 Identities=24% Similarity=0.391 Sum_probs=154.7
Q ss_pred CcEEEEEEEEEcCCC----------CCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CcceEEECCEe
Q 005302 498 GRIDFVDVSFRYSSR----------EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP--TNGQILIDGFP 565 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~----------~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p--~sG~I~idG~d 565 (703)
..++++||+|..+.. +...+|+|+|++|+|||.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 369999999998531 123699999999999999999999999999999999999874 78999999998
Q ss_pred CCCCChHHhhcceEEEccCCcccc-ccHHHHhccCC----CCCCCHH----HHHHHHHHhchHHHHHcCCCCcccccCC-
Q 005302 566 IKEVDIKWLRGRIGFVGQEPKLFR-MDISSNISYGC----TQDIKQQ----DIEWAAKQAYAHDFIMSLPSGYETLVDD- 635 (703)
Q Consensus 566 i~~i~~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~----~~~~~~e----~i~~aa~~A~l~d~I~~LP~GydT~vGe- 635 (703)
.++ ..+|+.+|||+|++.++. .|++||+.|.. +++.+.+ .+.++++..++.+. .|+.+|.
T Consensus 946 ~~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~ 1015 (1470)
T PLN03140 946 KKQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLP 1015 (1470)
T ss_pred CCh---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCC
Confidence 753 457888999999998876 59999998742 2123333 35566666665442 4788875
Q ss_pred --CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchhH
Q 005302 636 --DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLSL 695 (703)
Q Consensus 636 --~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~~ 695 (703)
..||||||||++|||||+.+|+||+||||||+||+.+...|.+.|+++ .-++-+.|-.+.
T Consensus 1016 ~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~ 1081 (1470)
T PLN03140 1016 GVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1081 (1470)
T ss_pred CCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence 589999999999999999999999999999999999999999999876 345677787763
No 331
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2e-30 Score=294.69 Aligned_cols=191 Identities=21% Similarity=0.331 Sum_probs=143.0
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChH-Hhhcc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK-WLRGR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~-~lR~~ 577 (703)
.|+++||+++| .++|+|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.+||.++...+.. ..|+.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 59999999984 2499999999999999999999999999999999999999999999999999876643 45778
Q ss_pred eEEEccCCc---ccc-ccHHHHhccC-----CCC-C-CCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHH
Q 005302 578 IGFVGQEPK---LFR-MDISSNISYG-----CTQ-D-IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQ 644 (703)
Q Consensus 578 I~~V~Qd~~---LF~-gTI~eNI~~g-----~~~-~-~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQ 644 (703)
++||+|++. +|. .|+.||+.+. ... . .+.++.. ..+.+.+..+..+.+ .... ..|||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~-~~~~~~~~LSgGq~q 398 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSMRVKTP-GHRTQIGSLSGGNQQ 398 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhcCccCC-CcccccccCCcHHHH
Confidence 999999963 565 5777664322 110 1 1212221 123344454422211 1222 479999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchhHHHHhh
Q 005302 645 RIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLSLYVLIC 700 (703)
Q Consensus 645 RIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~~~~~~~ 700 (703)
|++||||+.++|+||||||||++||+.+.+.+.+.|+++ .-++=.-|-+....-+|
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~ 458 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGIT 458 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhC
Confidence 999999999999999999999999999999998888554 23455567665544333
No 332
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=272.41 Aligned_cols=177 Identities=29% Similarity=0.407 Sum_probs=140.3
Q ss_pred EEEEEEEEEcCCCC-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-C----CcceEEECCEeCCCCChHH
Q 005302 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-P----TNGQILIDGFPIKEVDIKW 573 (703)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-p----~sG~I~idG~di~~i~~~~ 573 (703)
++++|++..|.... ...+++||||+|++||++||||+|||||||+.+.++|+++ | .+|+|.+||+|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997532 2469999999999999999999999999999999999998 4 6799999999999999875
Q ss_pred h---h-cceEEEccCCcc-cc--ccHH----HHhccCCC---CCCCHHHHHHHHHHhchHHH---HHcCCCCcccccCCC
Q 005302 574 L---R-GRIGFVGQEPKL-FR--MDIS----SNISYGCT---QDIKQQDIEWAAKQAYAHDF---IMSLPSGYETLVDDD 636 (703)
Q Consensus 574 l---R-~~I~~V~Qd~~L-F~--gTI~----eNI~~g~~---~~~~~e~i~~aa~~A~l~d~---I~~LP~GydT~vGe~ 636 (703)
+ | +.||+|+|||.- |+ -||. |=+..-.. .....++..+.++.+++.+- +.+-| .
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------h 152 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------H 152 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC---------c
Confidence 3 3 479999999863 33 2333 33332110 01113456677777777542 22222 4
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 637 LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 637 ~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
.||||||||+.||-||..+|++||-||||+|||..+.++|.+-|+++..
T Consensus 153 elSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~ 201 (316)
T COG0444 153 ELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR 201 (316)
T ss_pred ccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999988776
No 333
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=1.8e-30 Score=296.37 Aligned_cols=182 Identities=21% Similarity=0.337 Sum_probs=140.0
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHH-hhcc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW-LRGR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~-lR~~ 577 (703)
-|+++|++. .+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++...+... .|+.
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 489999982 1599999999999999999999999999999999999999999999999998776554 4678
Q ss_pred eEEEccCC---cccc-ccHHHHhccCC----CCCCCHHHHHHHHHHhchHHHHHcCCCCcc-cccCC--CCCChHHHHHH
Q 005302 578 IGFVGQEP---KLFR-MDISSNISYGC----TQDIKQQDIEWAAKQAYAHDFIMSLPSGYE-TLVDD--DLLSGGQKQRI 646 (703)
Q Consensus 578 I~~V~Qd~---~LF~-gTI~eNI~~g~----~~~~~~e~i~~aa~~A~l~d~I~~LP~Gyd-T~vGe--~~LSGGQkQRI 646 (703)
|+||+|++ .+|. .|+.||+..+. ......++. ...+.+.+..+ |++ ..... ..||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRAL--NIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHc--CCCCCCccCccccCCcHHHHHH
Confidence 99999985 3665 59999996421 000011111 11233444443 232 12222 47999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 647 AIARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 647 aLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++. -++=.-|-+..
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~ 465 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEE 465 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 99999999999999999999999999999999988752 24555566544
No 334
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=6.2e-30 Score=298.85 Aligned_cols=174 Identities=24% Similarity=0.363 Sum_probs=137.7
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4999999999974 46999999999999999999999999999999999999999999999 4332 59
Q ss_pred EEEccCC-cccc-ccHHHHhccCCCCCC--C--HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 579 GFVGQEP-KLFR-MDISSNISYGCTQDI--K--QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 579 ~~V~Qd~-~LF~-gTI~eNI~~g~~~~~--~--~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
|||+|++ .++. .|+.||+.++.+ .. + .+++.+.++..++.+. ..++.+ ..||||||||++|||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~--~~LSgGekqRl~la~al 455 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQ-EVMVNGRPRHVLGYLQDFLFHPK------RAMTPV--KALSGGERNRLLLARLF 455 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcc-cccccchHHHHHHHHHhcCCCHH------HHhChh--hhCCHHHHHHHHHHHHH
Confidence 9999986 4655 499999987632 21 1 2233333333333110 112222 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-EEEEecchhH
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSNGL-LVKSLHFLSL 695 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-~~~~~~~~~~ 695 (703)
+.+|++|||||||++||+.+...+.+.|++.++ ++=.-|-...
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~ 499 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQF 499 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 999999999999999999999999999998754 4555565543
No 335
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=7.5e-31 Score=263.34 Aligned_cols=172 Identities=27% Similarity=0.442 Sum_probs=144.3
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHh-hcce
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL-RGRI 578 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~l-R~~I 578 (703)
++++|++.+|++ -.+++|+||++++||.+||+||+||||||++|++.|+|+|++|+|.++|.||..++.... |.-|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 678999999985 469999999999999999999999999999999999999999999999999999996654 6679
Q ss_pred EEEccCCcccc-ccHHHHhccCCCCC-----------C--CHH----HHHHHHHHhchHHHHHcCCCCcccccCC--CCC
Q 005302 579 GFVGQEPKLFR-MDISSNISYGCTQD-----------I--KQQ----DIEWAAKQAYAHDFIMSLPSGYETLVDD--DLL 638 (703)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~~~-----------~--~~e----~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~L 638 (703)
+--+|.+.+|+ .|+.||+..+.... . +++ +..+.++.+++ +-.-.+ .+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL-----------~~~a~~~A~~L 150 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL-----------GELADRPAGNL 150 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCC-----------chhhcchhhcC
Confidence 99999999997 69999998762100 0 122 22223333333 333333 489
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 639 SGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 639 SGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
|+||+.|+-|||||..+|++|+||||.++|.++....+.+.|+++++
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~ 197 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD 197 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998886
No 336
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=2.3e-31 Score=258.39 Aligned_cols=181 Identities=27% Similarity=0.445 Sum_probs=144.7
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHH-hhc
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW-LRG 576 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~-lR~ 576 (703)
+.+..+|+..+|.. ++|.+++||+|++||.|++.||+|+||||....+.|+..|++|+|.+||.|++.++... -|-
T Consensus 3 ~~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 35788999999974 57999999999999999999999999999999999999999999999999999999654 355
Q ss_pred ceEEEccCCccccc-cHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhc
Q 005302 577 RIGFVGQEPKLFRM-DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 577 ~I~~V~Qd~~LF~g-TI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~ 653 (703)
-|||.|||+.+|.+ |+.|||...-+ ..+.+...+.++..+++.++.+ +....-.. .+||||||.|+-|||||.
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE--~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLE--IREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHh--hhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHh
Confidence 69999999999985 89999976532 2221222233333333333322 11111111 489999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
.+|+.++||||.+++||.+-..|++-++.+.+
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~ 187 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD 187 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHHHHHHh
Confidence 99999999999999999999999988876543
No 337
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.97 E-value=4e-30 Score=261.20 Aligned_cols=159 Identities=21% Similarity=0.217 Sum_probs=123.0
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEE-ECCEeCCCCChHHhhcceEEEccCCccccc-cHHH
Q 005302 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQIL-IDGFPIKEVDIKWLRGRIGFVGQEPKLFRM-DISS 594 (703)
Q Consensus 517 vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~-idG~di~~i~~~~lR~~I~~V~Qd~~LF~g-TI~e 594 (703)
||+|+||+|++||++||+||||||||||+|+|+|+++|++|+|. ++|.++ .+.|++.+|++ |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 787543 13467788885 9999
Q ss_pred HhccCCC-CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHH
Q 005302 595 NISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESE 673 (703)
Q Consensus 595 NI~~g~~-~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE 673 (703)
||.++.. ...+.+++.+.+. ....++..+++.+ ..||||||||++|||||+++|+++||||||+++|+.+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~--~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~ 140 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCY------QLTQLEQCYTDRV--SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQ 140 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHH------HHhChhHHhhchH--hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence 9987521 1234444433221 1234444455544 35999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-C--CcEEEEecchhHH
Q 005302 674 HNIKVATLS-N--GLLVKSLHFLSLY 696 (703)
Q Consensus 674 ~~I~~al~~-~--~~~~~~~~~~~~~ 696 (703)
+.+.+.+.+ . ...+=.-|-....
T Consensus 141 ~~~~~~l~~~~~~~~ii~vsH~~~~~ 166 (213)
T PRK15177 141 LRMQAALACQLQQKGLIVLTHNPRLI 166 (213)
T ss_pred HHHHHHHHHHhhCCcEEEEECCHHHH
Confidence 999887642 2 2355556766543
No 338
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=8.9e-30 Score=293.81 Aligned_cols=170 Identities=24% Similarity=0.294 Sum_probs=139.3
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
-++++|++++|++ ..|+++||+|++||.+||+||||||||||+|+|+|+.+|++|+|.++ ..|
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 4899999999963 24999999999999999999999999999999999999999999986 159
Q ss_pred EEEccCCcc-ccccHHHHhccCCCCCCC-HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCC
Q 005302 579 GFVGQEPKL-FRMDISSNISYGCTQDIK-QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (703)
Q Consensus 579 ~~V~Qd~~L-F~gTI~eNI~~g~~~~~~-~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p 656 (703)
+|++|++.+ ++.|++||+.++.. ..+ .+.+.++++..++.+...+ .+ ..||||||||++|||||.++|
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~L~~l~l~~~~~~-------~~--~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITD-DLGSSYYKSEIIKPLQLERLLDK-------NV--KDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhh-hcChHHHHHHHHHHCCCHHHHhC-------Cc--ccCCHHHHHHHHHHHHHhcCC
Confidence 999999875 66899999998632 222 3345566666666543322 11 469999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhC----C-cEEEEecchhH
Q 005302 657 TILILDEATSALDAESEHNIKVATLSN----G-LLVKSLHFLSL 695 (703)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~al~~~----~-~~~~~~~~~~~ 695 (703)
++|||||||++||+++...+.+.|+++ + -++=.-|-+..
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~ 516 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYM 516 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 999999999999999999999999875 2 34556665544
No 339
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=6.7e-30 Score=251.83 Aligned_cols=126 Identities=33% Similarity=0.385 Sum_probs=110.9
Q ss_pred EEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEc
Q 005302 503 VDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVG 582 (703)
Q Consensus 503 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~ 582 (703)
.||+++|++ .+++++ +|+|++||++||+||||||||||+|+|+|+++|++|+|.+||.+ +++++
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEc
Confidence 589999974 468888 49999999999999999999999999999999999999999964 78888
Q ss_pred cCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEe
Q 005302 583 QEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILD 662 (703)
Q Consensus 583 Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILD 662 (703)
|++. ||||||||++|||||+++|++++||
T Consensus 68 q~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllLD 96 (177)
T cd03222 68 QYID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFD 96 (177)
T ss_pred ccCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 8653 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhH
Q 005302 663 EATSALDAESEHNIKVATLSN-----GLLVKSLHFLSL 695 (703)
Q Consensus 663 EaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~ 695 (703)
|||++||+++.+.+.+.+++. .-.+=.-|-+..
T Consensus 97 EPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 134 (177)
T cd03222 97 EPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAV 134 (177)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 999999999999999988764 234555666544
No 340
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=1.2e-29 Score=297.97 Aligned_cols=176 Identities=25% Similarity=0.347 Sum_probs=141.1
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
-|+++||+|+|+++ +++|+|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.+++ +..|
T Consensus 508 ~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 59999999999743 4699999999999999999999999999999999999999999999876 2469
Q ss_pred EEEccCCccccccHHHHhccC----CCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcC
Q 005302 579 GFVGQEPKLFRMDISSNISYG----CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR 654 (703)
Q Consensus 579 ~~V~Qd~~LF~gTI~eNI~~g----~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r 654 (703)
||++|++. ...++.+|..+. .+ ..+++++.++++..++.+.....| -..||||||||++|||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~-~~~~~~i~~~L~~~gl~~~~~~~~--------~~~LSgGqkqRvaLAraL~~ 644 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLALQP--------MYTLSGGQKSRVAFAKITFK 644 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcC-CCCHHHHHHHHHHCCCChHHhcCC--------ccccCHHHHHHHHHHHHHhc
Confidence 99999863 334566664311 12 445778888888888754322111 14799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-cEEEEecchhHHH
Q 005302 655 DPTILILDEATSALDAESEHNIKVATLSNG-LLVKSLHFLSLYV 697 (703)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~al~~~~-~~~~~~~~~~~~~ 697 (703)
+|++|||||||++||+.+...+.+.+.+.+ .++=.-|-....-
T Consensus 645 ~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~ 688 (718)
T PLN03073 645 KPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLIS 688 (718)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHH
Confidence 999999999999999999999999998743 4455556554433
No 341
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.97 E-value=1.8e-30 Score=279.87 Aligned_cols=152 Identities=32% Similarity=0.458 Sum_probs=123.8
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccc-cHHHHhccCCC-CCCC----H
Q 005302 533 IAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRM-DISSNISYGCT-QDIK----Q 606 (703)
Q Consensus 533 IVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~ 606 (703)
|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.|+||+|++.+|.. |++|||.|+.. ...+ +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987654 47889999999999975 99999998631 0122 2
Q ss_pred HHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC--
Q 005302 607 QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG-- 684 (703)
Q Consensus 607 e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-- 684 (703)
+++.++++..++.++..+.| ..||||||||++|||||+++|++||||||||+||+++.+.+.+.|+++.
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKP---------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHcCCcchhcCCh---------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 34566666666655444332 4799999999999999999999999999999999999999999887653
Q ss_pred ---cEEEEecchhH
Q 005302 685 ---LLVKSLHFLSL 695 (703)
Q Consensus 685 ---~~~~~~~~~~~ 695 (703)
-.+-.-|-+..
T Consensus 150 ~g~tiiivTHd~~e 163 (325)
T TIGR01187 150 LGITFVFVTHDQEE 163 (325)
T ss_pred cCCEEEEEeCCHHH
Confidence 34555676543
No 342
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=8.2e-30 Score=276.54 Aligned_cols=184 Identities=29% Similarity=0.435 Sum_probs=149.2
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC-hHHhhcc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD-IKWLRGR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~-~~~lR~~ 577 (703)
.++++|++.+||+ ..+.+||||+|++||.-||.|++|+|||||+|+|.|+|+|++|+|++||++++--+ .+..|.-
T Consensus 4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 5899999999993 56899999999999999999999999999999999999999999999999987444 5667888
Q ss_pred eEEEccCCcccc-ccHHHHhccCCCCC----CCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHH
Q 005302 578 IGFVGQEPKLFR-MDISSNISYGCTQD----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIAR 650 (703)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~~~----~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLAR 650 (703)
||+|.|+..|++ -|+.|||.+|.++. .+..+.+ +.+.+..++. |++-.... ..||-|||||+-|-+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~-----~~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlK 153 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQAR-----ARIKELSERY--GLPVDPDAKVADLSVGEQQRVEILK 153 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHH-----HHHHHHHHHh--CCCCCccceeecCCcchhHHHHHHH
Confidence 999999999997 69999999997521 1222221 1222222221 22222222 479999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcEEEEecc
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVATLSNGLLVKSLHF 692 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~~~~~~~ 692 (703)
||||+|++||||||||.|-|..-.+..+.++++..-=|+.-|
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ 195 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIF 195 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999998888887766665544
No 343
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=8.7e-30 Score=236.70 Aligned_cols=168 Identities=26% Similarity=0.442 Sum_probs=145.3
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---cceEEECCEeCCCCChHHhh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT---NGQILIDGFPIKEVDIKWLR 575 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~---sG~I~idG~di~~i~~~~lR 575 (703)
.+.++||+.+-+++ -.|.|+|++|.+||++-|.||||||||||+.-+.|.+.|+ +|++.+|++++..++. -|
T Consensus 2 ~l~l~nvsl~l~g~---cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa--~q 76 (213)
T COG4136 2 MLCLKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA--AQ 76 (213)
T ss_pred ceeeeeeeecCCCc---eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch--hh
Confidence 46899999998853 5899999999999999999999999999999999999885 6999999999998764 47
Q ss_pred cceEEEccCCcccc-ccHHHHhccCCCCCC----CHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005302 576 GRIGFVGQEPKLFR-MDISSNISYGCTQDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (703)
Q Consensus 576 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~----~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (703)
+++|+.+||+.||. -|+-+||.|.-|++. ......+|++..+++++..+-| .+||||||-|+++-|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP---------~tlSGGQrARvaL~R 147 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP---------ATLSGGQRARVALLR 147 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh---------hhcCcchHHHHHHHH
Confidence 89999999999998 689999999876443 2334556777778877776655 469999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVAT 680 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al 680 (703)
+|+.+|+.|+||||.|.||..-..+..+.+
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wV 177 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWV 177 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHH
Confidence 999999999999999999998777766654
No 344
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.96 E-value=1.6e-29 Score=266.77 Aligned_cols=178 Identities=31% Similarity=0.426 Sum_probs=145.2
Q ss_pred cEEEEEEEEEcCCCC--------CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC
Q 005302 499 RIDFVDVSFRYSSRE--------MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD 570 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~--------~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~ 570 (703)
-++.+||...||-+. .-.+.+++||+.++||+++|||+||||||||-..|+|+.+++ |+|.++|+|+..++
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~ 354 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS 354 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence 589999999997431 134789999999999999999999999999999999999887 99999999999888
Q ss_pred hHH---hhcceEEEccCCcc-c--cccHHHHhccCC---CCCC----CHHHHHHHHHHhchHHHHHcCCCCcccccCCCC
Q 005302 571 IKW---LRGRIGFVGQEPKL-F--RMDISSNISYGC---TQDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDL 637 (703)
Q Consensus 571 ~~~---lR~~I~~V~Qd~~L-F--~gTI~eNI~~g~---~~~~----~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~ 637 (703)
.+. +|+++-+|+|||+= + ..||.+=|.=|- .+.. -++++.+|++.+|++..... -| ...
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~---RY-----PhE 426 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRN---RY-----PHE 426 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhh---cC-----Ccc
Confidence 665 68999999999972 2 256666665331 1122 24567778888887664431 11 146
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 638 LSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 638 LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
+|||||||||||||+.-+|++++|||||||||..-.++|.+.++++++
T Consensus 427 FSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~ 474 (534)
T COG4172 427 FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQ 474 (534)
T ss_pred cCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887665
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.5e-29 Score=293.50 Aligned_cols=173 Identities=24% Similarity=0.309 Sum_probs=138.9
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++. ..|
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5999999999974 46999999999999999999999999999999999999999999999741 269
Q ss_pred EEEccCC--cccc-ccHHHHhccCCCCCCCHHHHHHHHHHhchHH-HHHcCCCCcccccCCCCCChHHHHHHHHHHHhcC
Q 005302 579 GFVGQEP--KLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHD-FIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR 654 (703)
Q Consensus 579 ~~V~Qd~--~LF~-gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d-~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r 654 (703)
||++|+. .+.. .|+.+|+.-..+ ...++++.++++..++.+ .. +..+ ..||||||||++|||||++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~l~~~~~-------~~~~--~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAP-QELEQKLRDYLGGFGFQGDKV-------TEET--RRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCc-hhhHHHHHHHHHHcCCChhHh-------cCch--hhCCHHHHHHHHHHHHHhc
Confidence 9999985 3443 478888753222 334556666666655532 22 1111 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-EEEEecchhH
Q 005302 655 DPTILILDEATSALDAESEHNIKVATLSNGL-LVKSLHFLSL 695 (703)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-~~~~~~~~~~ 695 (703)
+|++|||||||++||+.+...+.+.|++.++ ++-.-|-...
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~ 489 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHL 489 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 9999999999999999999999999998764 3445565443
No 346
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=5.5e-30 Score=240.52 Aligned_cols=175 Identities=30% Similarity=0.428 Sum_probs=144.7
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEe--CCCCC----hH
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFP--IKEVD----IK 572 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~d--i~~i~----~~ 572 (703)
+|+++|++|.|+.. .+|.||+|+-+.||++.+.||||+|||||++.|.=+-.|.+|+..|-|.. .++.. ..
T Consensus 2 sirv~~in~~yg~~---q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccc---hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 58999999999853 68999999999999999999999999999999999999999999998863 33332 45
Q ss_pred HhhcceEEEccCCcccc-ccHHHHhccC------CCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHH
Q 005302 573 WLRGRIGFVGQEPKLFR-MDISSNISYG------CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (703)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~-gTI~eNI~~g------~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (703)
.+|+.+|+|+|+-.|.. -|+-||+.=. -+++-...+-.+.++.-.+.++.++.| -.|||||+||
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p---------lhlsggqqqr 149 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP---------LHLSGGQQQR 149 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc---------eecccchhhh
Confidence 79999999999999987 7999998532 111111233344555566666655555 2599999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
+||||||.-+|++|++||||++||++-.++|-+-|+.+.+
T Consensus 150 vaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~ 189 (242)
T COG4161 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE 189 (242)
T ss_pred HHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987754
No 347
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.4e-29 Score=251.47 Aligned_cols=177 Identities=32% Similarity=0.420 Sum_probs=140.3
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHhhcc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI-KWLRGR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~-~~lR~~ 577 (703)
-|+++||+.+|.+ +++|+|||.+|+|||.-+|+||+|||||||+++++|.+.|++|.+.+.|+....-+. .++|++
T Consensus 31 li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 31 LIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred eEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 4999999999974 579999999999999999999999999999999999999999999999999988887 999999
Q ss_pred eEEEccC---CccccccHHHHhc------cCCCC-CCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHH
Q 005302 578 IGFVGQE---PKLFRMDISSNIS------YGCTQ-DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQR 645 (703)
Q Consensus 578 I~~V~Qd---~~LF~gTI~eNI~------~g~~~-~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQR 645 (703)
||+|+-+ .+.=+.+++|=+. .|... +.|+++..+|..... . .|.....+. ..||-|||||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle------~--~g~~~la~r~~~~LS~Ge~rr 179 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLE------L--LGAKHLADRPFGSLSQGEQRR 179 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHH------H--cchhhhccCchhhcCHhHHHH
Confidence 9999743 3333555666553 22221 455555444332221 1 122222222 4899999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcE
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGLL 686 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~ 686 (703)
+.|||||.++|++|||||||++||....++..+.+.++...
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~ 220 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS 220 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998888887765543
No 348
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.96 E-value=3.2e-29 Score=313.03 Aligned_cols=171 Identities=23% Similarity=0.342 Sum_probs=140.5
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC----CCCcceEEECCEeCCCCChHHhhcceEEEccCCcccc-
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY----EPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFR- 589 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly----~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~- 589 (703)
+.+|+|+|+++++||.+||+||||||||||+|+|+|.. .|++|+|.+||+++.+.. ..+|+.++||+|++.+|.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 45999999999999999999999999999999999986 579999999999987654 457888999999998887
Q ss_pred ccHHHHhccCC----CC----CCCHHHHH-----HHHHHhchHHHHHcCCCCcccccCC---CCCChHHHHHHHHHHHhc
Q 005302 590 MDISSNISYGC----TQ----DIKQQDIE-----WAAKQAYAHDFIMSLPSGYETLVDD---DLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 590 gTI~eNI~~g~----~~----~~~~e~i~-----~aa~~A~l~d~I~~LP~GydT~vGe---~~LSGGQkQRIaLARAL~ 653 (703)
-|++||+.|+. +. +.+.++.. ++++.. .|.+-.||.+|+ +.||||||||++|||||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATY-------GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHc-------CcccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 59999998752 10 12333321 122222 344557899997 589999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-----EEEEecch
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNGL-----LVKSLHFL 693 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-----~~~~~~~~ 693 (703)
.+|+||+||||||+||+.+...+.+.|+++.+ .+-+.|-.
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~ 270 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQC 270 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence 99999999999999999999999999987643 56677764
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.3e-28 Score=287.46 Aligned_cols=180 Identities=24% Similarity=0.342 Sum_probs=131.8
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++||+++|++ .++|+|+||+|++||++|||||||||||||+|+|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999974 469999999999999999999999999999999999999999999999842 388
Q ss_pred EEccCCccccccHHHHhccCCCC--CCC-----------HHHHHHHHH----------HhchHHHHHcCCCCccc-ccCC
Q 005302 580 FVGQEPKLFRMDISSNISYGCTQ--DIK-----------QQDIEWAAK----------QAYAHDFIMSLPSGYET-LVDD 635 (703)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~--~~~-----------~e~i~~aa~----------~A~l~d~I~~LP~GydT-~vGe 635 (703)
|++|++..+..|+.+++.-.... ..+ ...+..+.. ...+.+.+..+ |+.. ....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 89987666666776665421000 000 000000000 01122333333 3321 1121
Q ss_pred --CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-EEEEecchhH
Q 005302 636 --DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL-LVKSLHFLSL 695 (703)
Q Consensus 636 --~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-~~~~~~~~~~ 695 (703)
..||||||||++|||||+.+|++|||||||+|||+++...+.+.|++.++ ++=.-|-...
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~ 208 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDF 208 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 47999999999999999999999999999999999999999999988754 3444565443
No 350
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=2.1e-29 Score=290.80 Aligned_cols=177 Identities=25% Similarity=0.304 Sum_probs=141.0
Q ss_pred EEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEE-----------ECCEeCCCCChH
Q 005302 504 DVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQIL-----------IDGFPIKEVDIK 572 (703)
Q Consensus 504 nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~-----------idG~di~~i~~~ 572 (703)
+++++|+++ ..+|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. ++|.++.++..+
T Consensus 78 ~~~~~yg~~--~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGVN--GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecCC--ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 489999743 46999999 9999999999999999999999999999999999998 999998754321
Q ss_pred H--hhcc----eEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005302 573 W--LRGR----IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI 646 (703)
Q Consensus 573 ~--lR~~----I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRI 646 (703)
- .+.. +.+++|.|.+|.+|++||+... + ..+++.++++..++.+.. |..+ .+||||||||+
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~-~~~~~~~~l~~l~l~~~~-------~~~~--~~LSgGe~qrv 221 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---D-ERGKLDEVVERLGLENIL-------DRDI--SELSGGELQRV 221 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhh---h-HHHHHHHHHHHcCCchhh-------cCCh--hhCCHHHHHHH
Confidence 1 1122 4566667788899999999854 1 245667777776664332 2222 47999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhHH
Q 005302 647 AIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSLY 696 (703)
Q Consensus 647 aLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~~ 696 (703)
+|||||+++|++|+||||||+||+.+...+.+.|+++. -++=.-|-+...
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l 274 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVL 274 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 99999999999999999999999999999999998872 345556766543
No 351
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=2.7e-29 Score=246.51 Aligned_cols=167 Identities=29% Similarity=0.421 Sum_probs=144.9
Q ss_pred CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCcc---ccc
Q 005302 514 MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKL---FRM 590 (703)
Q Consensus 514 ~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~L---F~g 590 (703)
++++|+++||+|++||.|-|+|.+|+|||||++.+.|-..|++|+|.|||+|+..++...--..++-|+|||.- =+-
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 47899999999999999999999999999999999999999999999999999999999888899999999974 357
Q ss_pred cHHHHhccCCCCC--CCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCC
Q 005302 591 DISSNISYGCTQD--IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATS 666 (703)
Q Consensus 591 TI~eNI~~g~~~~--~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ILILDEaTS 666 (703)
||.||+.++.... -.-..-...-+...-.+.+..+|.|++-.+++ .-|||||||=++|+-|-++.|+||+|||=|+
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTA 177 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTA 177 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhh
Confidence 8999999874311 00111112334556667889999999999998 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 005302 667 ALDAESEHNIKVAT 680 (703)
Q Consensus 667 aLD~~tE~~I~~al 680 (703)
||||.+...|++.=
T Consensus 178 ALDPkta~~vm~lT 191 (263)
T COG1101 178 ALDPKTAEFVMELT 191 (263)
T ss_pred cCCcchHHHHHHHH
Confidence 99999999988753
No 352
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.96 E-value=2.2e-25 Score=241.40 Aligned_cols=314 Identities=21% Similarity=0.302 Sum_probs=222.4
Q ss_pred HHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q 005302 363 AQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFI------------ 430 (703)
Q Consensus 363 ~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~iiil~~g~~lv------------ 430 (703)
=...+.+-++|-.|+..+.+.+..++..+.+.+.-....+...++..+-+++.- -.|-|.-+|
T Consensus 306 Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mK-----YvWsg~GlvmvsiPI~~~t~~ 380 (728)
T KOG0064|consen 306 HSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMK-----YTWSGTGLVMVSIPILTSTLA 380 (728)
T ss_pred HHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhccCceEEEEeeeeecccC
Confidence 356788889999999999999999888888877544333333333322222110 112232222
Q ss_pred HhCCcC-----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------------CCCCccc--
Q 005302 431 MRGNIT-----AEQLTKFILYSEWLI---YSTWWVGDNLSSLMQSVGASEKVFQLMDL-------------MPSDQFM-- 487 (703)
Q Consensus 431 ~~G~it-----vG~l~afi~y~~~~~---~~~~~l~~~~~~l~~~~~~~~Ri~dil~~-------------~~e~~~~-- 487 (703)
.+|... +.+.-.|+.-...+. .++..++..+-++.+..+...|+++.++- .+|....
T Consensus 381 s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~ 460 (728)
T KOG0064|consen 381 SEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRT 460 (728)
T ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccC
Confidence 122211 112445555444443 44556667777777888888888754421 1111000
Q ss_pred ----cccccccC-----CCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcce
Q 005302 488 ----SKGKKLQR-----LMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQ 558 (703)
Q Consensus 488 ----~~~~~~~~-----~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~ 558 (703)
.++.+.+. ....|.++||-.--|+. .-+..+++|+|++|-.+-|+||+|||||+|.++|.|+|+...|.
T Consensus 461 ~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~--~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~ 538 (728)
T KOG0064|consen 461 IDESRNSNPLPTTDAIRNFNGIILENIPVITPAG--DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGL 538 (728)
T ss_pred ccccccCCcCCccchhhcccceEEecCceeccCc--ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCe
Confidence 00111111 12359999998888865 35889999999999999999999999999999999999998887
Q ss_pred EEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCC------CCCCHHHHHHHHHHhchHHHHHcCCCCcccc
Q 005302 559 ILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCT------QDIKQQDIEWAAKQAYAHDFIMSLPSGYETL 632 (703)
Q Consensus 559 I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~------~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~ 632 (703)
..+-- +.+|=|+||.|+.=-||+||-|-|-+. ++.+|.++++.++.+.++ .|.+-..|+|..
T Consensus 539 L~~P~-----------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~-~i~qr~~g~da~ 606 (728)
T KOG0064|consen 539 LSIPR-----------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLE-HILQREGGWDAV 606 (728)
T ss_pred eecCC-----------CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHH-HHHHhccChhhh
Confidence 76411 345999999999999999999998642 257899999999999996 666667888876
Q ss_pred cCC-CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcEEEE-ecchhH
Q 005302 633 VDD-DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGLLVKS-LHFLSL 695 (703)
Q Consensus 633 vGe-~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~~~~-~~~~~~ 695 (703)
-.= .-||||+|||+++||.+|++|+.-+|||+|||+-++.|.+|-++.++.+--.-| -|--||
T Consensus 607 ~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpsl 671 (728)
T KOG0064|consen 607 RDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSL 671 (728)
T ss_pred ccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccH
Confidence 443 589999999999999999999999999999999999999999999987754433 344443
No 353
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.95 E-value=7.8e-28 Score=281.22 Aligned_cols=179 Identities=23% Similarity=0.334 Sum_probs=128.3
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++||+++|++ .++|+|+||+|++||++|||||||||||||+|+|+|+++|++|+|.++|. . .++
T Consensus 4 l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-~----------~~~ 69 (635)
T PRK11147 4 ISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-L----------IVA 69 (635)
T ss_pred EEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-C----------EEE
Confidence 889999999974 46999999999999999999999999999999999999999999999873 1 267
Q ss_pred EEccCCcc-ccccHHHHhccCCC-----------------CCCCHHHHHHHHH-------------HhchHHHHHcCCCC
Q 005302 580 FVGQEPKL-FRMDISSNISYGCT-----------------QDIKQQDIEWAAK-------------QAYAHDFIMSLPSG 628 (703)
Q Consensus 580 ~V~Qd~~L-F~gTI~eNI~~g~~-----------------~~~~~e~i~~aa~-------------~A~l~d~I~~LP~G 628 (703)
+++|++.. ..+++.+++..+.. .+..++.+...++ ...+.+.+..+...
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 149 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD 149 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC
Confidence 77776532 23566666532210 0000111111100 11223333333211
Q ss_pred cccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-EEEEecchh
Q 005302 629 YETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL-LVKSLHFLS 694 (703)
Q Consensus 629 ydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-~~~~~~~~~ 694 (703)
.+..+ ..||||||||++|||||+.+|++|||||||++||+++...+.+.|++.+. ++=.-|-..
T Consensus 150 ~~~~~--~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~ 214 (635)
T PRK11147 150 PDAAL--SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRS 214 (635)
T ss_pred CCCch--hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 11111 47999999999999999999999999999999999999999999988754 333445443
No 354
>PLN03140 ABC transporter G family member; Provisional
Probab=99.95 E-value=1.5e-28 Score=306.55 Aligned_cols=176 Identities=21% Similarity=0.334 Sum_probs=140.2
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---cceEEECCEeCCCCChHHhhcceEEEccCCcccc-c
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT---NGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFR-M 590 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~---sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-g 590 (703)
..+|+|+|++|+|||.++|+||||||||||+|+|+|.++|+ +|+|.+||+++.+.. .|+.++||+|++.+|. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 45999999999999999999999999999999999999998 999999999997654 3788999999998876 6
Q ss_pred cHHHHhccCCC----C-------CCCH----------HHH---HHHHHHhc------hHHHHH--cCCCCcccccCC---
Q 005302 591 DISSNISYGCT----Q-------DIKQ----------QDI---EWAAKQAY------AHDFIM--SLPSGYETLVDD--- 635 (703)
Q Consensus 591 TI~eNI~~g~~----~-------~~~~----------e~i---~~aa~~A~------l~d~I~--~LP~GydT~vGe--- 635 (703)
|++||+.|+.. . +.+. +++ .+++...+ .++.++ .|..-.||.||+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999987421 0 0011 111 11111111 122333 345567899998
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecch
Q 005302 636 DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFL 693 (703)
Q Consensus 636 ~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~ 693 (703)
+.||||||||++|||||+.+|++|+|||||++||+.+...|.+.|+++. -.+-++|-.
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp 397 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQP 397 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence 4899999999999999999999999999999999999999999998763 356677754
No 355
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=3.9e-28 Score=280.89 Aligned_cols=189 Identities=29% Similarity=0.478 Sum_probs=153.3
Q ss_pred CcEEEEEEEEEcCCCC--CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC---CcceEEECCEeCCCCChH
Q 005302 498 GRIDFVDVSFRYSSRE--MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP---TNGQILIDGFPIKEVDIK 572 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p---~sG~I~idG~di~~i~~~ 572 (703)
..++++|++..-++.. .+.+|+|||.+++|||..||.||||||||||++.|+|-.++ .+|+|++||++ .+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~---~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP---RDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc---Cchh
Confidence 4689999999987641 46799999999999999999999999999999999999975 79999999944 4568
Q ss_pred HhhcceEEEccCCcccc-ccHHHHhccCC----CCCCCHHHHHHHHHHhchHHHHHcCCCC--cccccCC---CCCChHH
Q 005302 573 WLRGRIGFVGQEPKLFR-MDISSNISYGC----TQDIKQQDIEWAAKQAYAHDFIMSLPSG--YETLVDD---DLLSGGQ 642 (703)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~----~~~~~~e~i~~aa~~A~l~d~I~~LP~G--ydT~vGe---~~LSGGQ 642 (703)
.+|+.+|||+||+.+++ -||+|++.|.. |.+.+.++.. ..+++.|.+|.-- -||.||. +.+||||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~-----~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGE 175 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKR-----ERVEEVISELGLEKCADTLIGNPGIRGLSGGE 175 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHcCChhhccceecCCCCCccccch
Confidence 89999999999999887 69999997653 2122333322 2233444444332 5889986 5899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchh
Q 005302 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLS 694 (703)
Q Consensus 643 kQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~ 694 (703)
|+|++||--|+.||+||+||||||+||+.+..++.+.|+++. -++-++|--|
T Consensus 176 rkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPs 231 (613)
T KOG0061|consen 176 RKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPS 231 (613)
T ss_pred hhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCc
Confidence 999999999999999999999999999999999999987553 3456677543
No 356
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=6.7e-28 Score=237.44 Aligned_cols=137 Identities=30% Similarity=0.448 Sum_probs=107.6
Q ss_pred CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHH
Q 005302 514 MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDIS 593 (703)
Q Consensus 514 ~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~ 593 (703)
..++|+|+||+|++||.+||+||||||||||+++++ +++|+|.++|.. ... .|+.+++++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH----------
Confidence 367999999999999999999999999999999986 369999998862 221 2445888877
Q ss_pred HHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCC--CCEEEEeCCCCCCC
Q 005302 594 SNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD--PTILILDEATSALD 669 (703)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~--p~ILILDEaTSaLD 669 (703)
.+++..++.++.+ .+. ..||||||||++|||||+++ |++++|||||++||
T Consensus 68 -------------------------~~~l~~~~L~~~~-~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD 121 (176)
T cd03238 68 -------------------------LQFLIDVGLGYLT-LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLH 121 (176)
T ss_pred -------------------------HHHHHHcCCCccc-cCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCC
Confidence 1234444433322 222 58999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 670 AESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 670 ~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
+++.+.+.+.++++. -++=.-|-...
T Consensus 122 ~~~~~~l~~~l~~~~~~g~tvIivSH~~~~ 151 (176)
T cd03238 122 QQDINQLLEVIKGLIDLGNTVILIEHNLDV 151 (176)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 999999999988742 23445565543
No 357
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.4e-28 Score=238.41 Aligned_cols=174 Identities=29% Similarity=0.418 Sum_probs=149.1
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++||+.+|++ ..|++++|++|++|+.++|+||+|+|||||+..++||.++++|+|.|||.++.+++.+.+-+.++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 789999999974 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCccc-cccHHHHhccCCCC-------CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005302 580 FVGQEPKLF-RMDISSNISYGCTQ-------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (703)
Q Consensus 580 ~V~Qd~~LF-~gTI~eNI~~g~~~-------~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (703)
..-|+.++- .=||+|=+.||+-| ..|...|.+|.+--++.+. .+.|= ..||||||||--||-.
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l----~dryL-----d~LSGGQrQRAfIAMV 149 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDL----SDRYL-----DELSGGQRQRAFIAMV 149 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccch----HHHhH-----Hhcccchhhhhhhhee
Confidence 999999984 47999999999742 1233445566655544321 10010 4799999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 652 ILRDPTILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
+.++.+.++||||..+||..-...+++.++++.+
T Consensus 150 laQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~ 183 (252)
T COG4604 150 LAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLAD 183 (252)
T ss_pred eeccCcEEEecCcccccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876543
No 358
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.6e-28 Score=235.55 Aligned_cols=169 Identities=27% Similarity=0.404 Sum_probs=143.9
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
++.+|++..-+ +..++.++||++.+||.+-|+||+|||||||+++|+|+.+|++|+|+++|.+++.. .+++++.+-
T Consensus 3 L~a~~L~~~R~---e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~-~~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCERG---ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV-RESYHQALL 78 (209)
T ss_pred chhhhhhhccC---cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccc-hhhHHHHHH
Confidence 34566665543 46799999999999999999999999999999999999999999999999999874 455688888
Q ss_pred EEccCCcc-ccccHHHHhccCCC--CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCC
Q 005302 580 FVGQEPKL-FRMDISSNISYGCT--QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (703)
Q Consensus 580 ~V~Qd~~L-F~gTI~eNI~~g~~--~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p 656 (703)
|..-.+-+ =.-|+.||+.|... ...+++.+++|+..+++.++ .++| + .+||.||+.|+||||-++..+
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp------~--~~LSAGQqRRvAlArL~ls~~ 149 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLP------V--GQLSAGQQRRVALARLWLSPA 149 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccc------h--hhcchhHHHHHHHHHHHcCCC
Confidence 88877766 56899999999853 12467999999999999775 2233 2 479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHH
Q 005302 657 TILILDEATSALDAESEHNIKVATL 681 (703)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~al~ 681 (703)
|+.||||||++||.+.++...+-+.
T Consensus 150 pLWiLDEP~taLDk~g~a~l~~l~~ 174 (209)
T COG4133 150 PLWILDEPFTALDKEGVALLTALMA 174 (209)
T ss_pred CceeecCcccccCHHHHHHHHHHHH
Confidence 9999999999999999998877664
No 359
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.95 E-value=3.6e-24 Score=218.69 Aligned_cols=270 Identities=23% Similarity=0.330 Sum_probs=224.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 185 FAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRL---LILLCVTSGICSGLRGCCFGIANMILVKRMRETLY 261 (703)
Q Consensus 185 ~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~~~~~~~~~l---l~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf 261 (703)
+.+++++++..+.....|.+++..++.....+.........+ +..+.++.........+...+.+.++..++|.+++
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888888889888877654322211101111111 11122233344455555667888999999999999
Q ss_pred HHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005302 262 SALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAGLMLIY 341 (703)
Q Consensus 262 ~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~~~i~~~~ 341 (703)
+|++++|.+||+++++||+++|+++|++.+++.+...+..++.+++..++.+++++.++|++++++++..+++.++...+
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~ 161 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIF 161 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 342 GLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVI 421 (703)
Q Consensus 342 ~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~ii 421 (703)
.++.++..++..+..++..+.+.|.++|+++||+||.|+++.+|+++..++..+...+..+...........+..+..++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (275)
T PF00664_consen 162 SKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVL 241 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888899999999999999999999999999999999999999988888888888888888888888899
Q ss_pred HHHHHHHH-HHhCCcCHHHHHHHHHHHHHHHHHH
Q 005302 422 AVLIGGMF-IMRGNITAEQLTKFILYSEWLIYST 454 (703)
Q Consensus 422 il~~g~~l-v~~G~itvG~l~afi~y~~~~~~~~ 454 (703)
++++|+++ +.+|.+|+|.+++++.|..++.+|+
T Consensus 242 ~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 242 ILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 99999999 9999999999999999999888764
No 360
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=5.7e-27 Score=264.91 Aligned_cols=170 Identities=32% Similarity=0.503 Sum_probs=133.7
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++|++++|++ .++|+|+||++.+|++++|||++|||||||+|+|.|..+|++|+|..++. -.+
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 4899999999963 57999999999999999999999999999999999999999999998651 259
Q ss_pred EEEccCCccccc-cHHHHhccCCCCCCC--HHHHHHHHH---------H----------------hchHHHHHcCCCCcc
Q 005302 579 GFVGQEPKLFRM-DISSNISYGCTQDIK--QQDIEWAAK---------Q----------------AYAHDFIMSLPSGYE 630 (703)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~~~~~--~e~i~~aa~---------~----------------A~l~d~I~~LP~Gyd 630 (703)
||++|++.+.++ |+.|.+..+.. +.. ..+.+++.. . +.+..-...+ |+.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~ 145 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFG-ELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFP 145 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhH-HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCC
Confidence 999999999975 99999988743 210 011111110 1 1111112222 222
Q ss_pred cccCC-CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 631 TLVDD-DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 631 T~vGe-~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
..-.. ++||||||-|++|||||+.+|++|+|||||.|||.++-.-..+-|.+.++
T Consensus 146 ~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g 201 (530)
T COG0488 146 DEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG 201 (530)
T ss_pred cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC
Confidence 22011 48999999999999999999999999999999999999999999998888
No 361
>PLN03073 ABC transporter F family; Provisional
Probab=99.94 E-value=6.5e-27 Score=274.90 Aligned_cols=191 Identities=21% Similarity=0.258 Sum_probs=136.0
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC---CCCcceEEECCEeCCCCC--h--
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY---EPTNGQILIDGFPIKEVD--I-- 571 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly---~p~sG~I~idG~di~~i~--~-- 571 (703)
.|+++|++|+|++ ..+|+|+||+|++||++|||||||||||||+++|+|.. .|++|+|.+.++++..-+ .
T Consensus 177 ~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 177 DIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 5999999999974 35999999999999999999999999999999999864 689999987665432111 1
Q ss_pred ----------HHhhcceEEEccCCccccccHHHHhccCCCCCCCH----HHHHHHHHHhch----------HHHHHcCCC
Q 005302 572 ----------KWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQ----QDIEWAAKQAYA----------HDFIMSLPS 627 (703)
Q Consensus 572 ----------~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~----e~i~~aa~~A~l----------~d~I~~LP~ 627 (703)
..+++.+++++|++.+...+..+|+........+. +++.++.+..++ .+.+..+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l-- 331 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL-- 331 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC--
Confidence 12356689999988765556666653211101122 334343333322 1222222
Q ss_pred Ccccc-cCC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-EEEEecchh
Q 005302 628 GYETL-VDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL-LVKSLHFLS 694 (703)
Q Consensus 628 GydT~-vGe--~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-~~~~~~~~~ 694 (703)
|++.. ... ..||||||||++|||||+.+|++|||||||++||+++...+.+.|++.+. ++=.-|-..
T Consensus 332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~ 402 (718)
T PLN03073 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHARE 402 (718)
T ss_pred CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 22211 111 47999999999999999999999999999999999999999999998753 344445443
No 362
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=4.6e-27 Score=225.04 Aligned_cols=160 Identities=31% Similarity=0.479 Sum_probs=132.3
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCc--------
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPK-------- 586 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~-------- 586 (703)
..+.+.|||+.++|+++||+|++|||||||+|.|.|..+|++|+|++||.++.--|...--++|-+++|||.
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~ 105 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLR 105 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhh
Confidence 347889999999999999999999999999999999999999999999999987666666678999999984
Q ss_pred ---cccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeC
Q 005302 587 ---LFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDE 663 (703)
Q Consensus 587 ---LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDE 663 (703)
+.++.++-|-.+- + ..-.++|.+.++++|+ +|+ ++.+-...||-|||||+||||||.-+|+|+|-||
T Consensus 106 iGqiLd~PL~l~T~~~-~-~~R~~~i~~TL~~VGL------~Pd--han~~~~~la~~QKQRVaLARALIL~P~iIIaDe 175 (267)
T COG4167 106 IGQILDFPLRLNTDLE-P-EQRRKQIFETLRMVGL------LPD--HANYYPHMLAPGQKQRVALARALILRPKIIIADE 175 (267)
T ss_pred hhhHhcchhhhcccCC-h-HHHHHHHHHHHHHhcc------Ccc--ccccchhhcCchhHHHHHHHHHHhcCCcEEEehh
Confidence 4445555554443 2 4556788889999887 343 2223345799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCC
Q 005302 664 ATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 664 aTSaLD~~tE~~I~~al~~~~ 684 (703)
|-.+||.....++.+....+.
T Consensus 176 Al~~LD~smrsQl~NL~LeLQ 196 (267)
T COG4167 176 ALASLDMSMRSQLINLMLELQ 196 (267)
T ss_pred hhhhccHHHHHHHHHHHHHHH
Confidence 999999999888877655443
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.93 E-value=2.6e-25 Score=251.48 Aligned_cols=168 Identities=29% Similarity=0.402 Sum_probs=143.3
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
.-++++|++++|+++ ..+++++||.|++|++||||||+|+|||||+|+|+|-..|.+|+|.++-. -+
T Consensus 320 ~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~ 386 (530)
T COG0488 320 LVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VK 386 (530)
T ss_pred eeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eE
Confidence 359999999999753 57999999999999999999999999999999999999999999987541 25
Q ss_pred eEEEccCC-ccc-cccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCC
Q 005302 578 IGFVGQEP-KLF-RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRD 655 (703)
Q Consensus 578 I~~V~Qd~-~LF-~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~ 655 (703)
|||..|+. .++ +.|+.|++.-..+ +..+.+++..+..-+....-.. +.| ..||||||-|+.||+.++.+
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~-~~~e~~~r~~L~~f~F~~~~~~------~~v--~~LSGGEk~Rl~La~ll~~~ 457 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFP-DGDEQEVRAYLGRFGFTGEDQE------KPV--GVLSGGEKARLLLAKLLLQP 457 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCc-cccHHHHHHHHHHcCCChHHHh------Cch--hhcCHhHHHHHHHHHHhccC
Confidence 89999998 444 3489999987754 5557888888887776554321 111 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhCCcEE
Q 005302 656 PTILILDEATSALDAESEHNIKVATLSNGLLV 687 (703)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~al~~~~~~~ 687 (703)
|.+|||||||.|||.++-..+.++|.+.++-|
T Consensus 458 pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtv 489 (530)
T COG0488 458 PNLLLLDEPTNHLDIESLEALEEALLDFEGTV 489 (530)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHhCCCeE
Confidence 99999999999999999999999999988865
No 364
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.7e-26 Score=218.88 Aligned_cols=176 Identities=31% Similarity=0.461 Sum_probs=124.2
Q ss_pred cEEEEEEEEEcCCC----CCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECC----EeCCCCC
Q 005302 499 RIDFVDVSFRYSSR----EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG----FPIKEVD 570 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~----~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG----~di~~i~ 570 (703)
.+.++||+.++.-+ -.-||++|+||+++.||++++=||||+|||||++.|-|-|.|++|+|.+-- .|+-.-.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 36778887776321 125799999999999999999999999999999999999999999999843 2333333
Q ss_pred ----hHHhhcceEEEccCCcccccc-----HHHH-hccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCCh
Q 005302 571 ----IKWLRGRIGFVGQEPKLFRMD-----ISSN-ISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSG 640 (703)
Q Consensus 571 ----~~~lR~~I~~V~Qd~~LF~gT-----I~eN-I~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSG 640 (703)
++--|+.||||+|---....- ++|- +..|-+.+.-.++..+.+..-++-+-.-+|| ...+||
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La--------PaTFSG 155 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA--------PATFSG 155 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC--------CcccCC
Confidence 233467799999943222211 1221 1222211111122222233333334333332 468999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 005302 641 GQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLS 682 (703)
Q Consensus 641 GQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~ 682 (703)
|++||+-|||.+.-+-+||+|||||++||..|.+.+.+.|..
T Consensus 156 GEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e 197 (235)
T COG4778 156 GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIRE 197 (235)
T ss_pred chheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHH
Confidence 999999999999999999999999999999999999888864
No 365
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.92 E-value=3e-25 Score=234.61 Aligned_cols=179 Identities=27% Similarity=0.362 Sum_probs=143.1
Q ss_pred cEEEEEEEEEcCC-CCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCCCChH
Q 005302 499 RIDFVDVSFRYSS-REMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKEVDIK 572 (703)
Q Consensus 499 ~I~~~nVsF~Y~~-~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-----~sG~I~idG~di~~i~~~ 572 (703)
-++++|+|.+|.. +....+.++|||+|++||++|+||+||||||--...++|+++- -+|+|.+||.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 3788888888753 2246799999999999999999999999999999999999865 468999999999888877
Q ss_pred Hhhc----ceEEEccCCcc-cc--cc----HHHHhccCC--CCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CC
Q 005302 573 WLRG----RIGFVGQEPKL-FR--MD----ISSNISYGC--TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DL 637 (703)
Q Consensus 573 ~lR~----~I~~V~Qd~~L-F~--gT----I~eNI~~g~--~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~ 637 (703)
.+|+ .|++|+|||+- .| -| |.|-|.+-. ...+-.+++.++++.+|+.|-=. .+.. ..
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~--------rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK--------RLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh--------hhhhCCcc
Confidence 7764 79999999973 11 12 344444321 11344677788888888755211 1122 47
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 638 LSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 638 LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
||||||||+.||-||..+|++||=||||.|||....++|.+-|+++..
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~ 205 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQA 205 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987654
No 366
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=5.1e-25 Score=220.02 Aligned_cols=173 Identities=27% Similarity=0.498 Sum_probs=148.0
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.+++++|+.+|++ ..+++|+||+++||+..+++|++|+||||.+++|+|+.+|++|+|.+||.|++. ..+++|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 4789999999974 579999999999999999999999999999999999999999999999999975 457889
Q ss_pred EEEccCCcccc-ccHHHHhccCCC-CCCCHHHHHHHHHHhchHHHHHcCCC-CcccccCC--CCCChHHHHHHHHHHHhc
Q 005302 579 GFVGQEPKLFR-MDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPS-GYETLVDD--DLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~~e~i~~aa~~A~l~d~I~~LP~-GydT~vGe--~~LSGGQkQRIaLARAL~ 653 (703)
||.|-+--|+. .|+.|-+.|+.. +..+.++++. .+..|.+++.- ||.| + ..||-|.+|+|-+--|++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~-----~~~~wLer~~i~~~~~---~kIk~LSKGnqQKIQfisavi 146 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-----KLQAWLERLEIVGKKT---KKIKELSKGNQQKIQFISAVI 146 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHhcccccccc---chHHHhhhhhhHHHHHHHHHh
Confidence 99999999987 789999998853 3455555543 34567776542 1222 2 379999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcE
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNGLL 686 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~ 686 (703)
++|+++|||||.|+|||-|.+.+.+++.++..-
T Consensus 147 HePeLlILDEPFSGLDPVN~elLk~~I~~lk~~ 179 (300)
T COG4152 147 HEPELLILDEPFSGLDPVNVELLKDAIFELKEE 179 (300)
T ss_pred cCCCEEEecCCccCCChhhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999877654
No 367
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.9e-24 Score=212.73 Aligned_cols=179 Identities=28% Similarity=0.327 Sum_probs=147.6
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCcceEEECCEeCCCCChHH-hh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL--YEPTNGQILIDGFPIKEVDIKW-LR 575 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl--y~p~sG~I~idG~di~~i~~~~-lR 575 (703)
-++++|++.+-.+. +.+|+++||+|++||..||.||+|||||||.+.|+|. |++++|+|++||+||.+++.++ -|
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 37899999988642 4799999999999999999999999999999999997 5999999999999999999766 46
Q ss_pred cceEEEccCCccccc-cHHHHhccCCCC-----C---CCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005302 576 GRIGFVGQEPKLFRM-DISSNISYGCTQ-----D---IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI 646 (703)
Q Consensus 576 ~~I~~V~Qd~~LF~g-TI~eNI~~g~~~-----~---~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRI 646 (703)
.-|..-+|.|.=++| |+++=++.+... . ...+++.++++..++++.... -.|+ ..+|||+|.|.
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~------R~vN-~GFSGGEkKR~ 153 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLE------RYVN-EGFSGGEKKRN 153 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhh------cccC-CCcCcchHHHH
Confidence 779999999999998 455555432110 1 235677888888888773321 1222 25999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcE
Q 005302 647 AIARAILRDPTILILDEATSALDAESEHNIKVATLSNGLL 686 (703)
Q Consensus 647 aLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~ 686 (703)
-|+.+++-+|++.|||||-|+||.++=+.|.+.++++...
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~ 193 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREE 193 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998888776543
No 368
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.91 E-value=1e-24 Score=219.02 Aligned_cols=148 Identities=22% Similarity=0.287 Sum_probs=114.1
Q ss_pred eeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---------cceEEECCEeCCCCChHHhhcceEEEccCCcccc
Q 005302 519 QHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT---------NGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFR 589 (703)
Q Consensus 519 ~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~---------sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~ 589 (703)
+++++++++| .++|+||||||||||++.|.|+..|. .|++.++|.+.... ..+++|++|+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 6689999999 99999999999999999999998665 35788888877542 2467899999999888
Q ss_pred ccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc----CCCCEEEEeCCC
Q 005302 590 MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL----RDPTILILDEAT 665 (703)
Q Consensus 590 gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~----r~p~ILILDEaT 665 (703)
|+. ...+++.++++. ++-.+..+ ..||||||||++||||+. ++|++++|||||
T Consensus 89 --------~~~---~~~~~~~~~l~~----------~~~~~~~~--~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 89 --------YSI---ISQGDVSEIIEA----------PGKKVQRL--SLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred --------eeE---EehhhHHHHHhC----------CCccccch--hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 321 123455555544 11122221 479999999999999985 677999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCc---EEEEecchh
Q 005302 666 SALDAESEHNIKVATLSNGL---LVKSLHFLS 694 (703)
Q Consensus 666 SaLD~~tE~~I~~al~~~~~---~~~~~~~~~ 694 (703)
++||+++...+.+.|+++.. .+=.-|-..
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~ 177 (197)
T cd03278 146 AALDDANVERFARLLKEFSKETQFIVITHRKG 177 (197)
T ss_pred ccCCHHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence 99999999999999988643 344455544
No 369
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2e-23 Score=198.71 Aligned_cols=173 Identities=26% Similarity=0.391 Sum_probs=130.8
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECC-----EeCCCCChHH
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG-----FPIKEVDIKW 573 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG-----~di~~i~~~~ 573 (703)
-++++++|..|++. .-.+|+||++-|||..+|||+||||||||+++|.+-+.|++|+|.++- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 47899999999864 468999999999999999999999999999999999999999999965 3343444333
Q ss_pred ----hhcceEEEccCCccccccHHHHhccCCC--CCCCHHHHHHH------HHHhchHHHHHcCCCCcccccCC--CCCC
Q 005302 574 ----LRGRIGFVGQEPKLFRMDISSNISYGCT--QDIKQQDIEWA------AKQAYAHDFIMSLPSGYETLVDD--DLLS 639 (703)
Q Consensus 574 ----lR~~I~~V~Qd~~LF~gTI~eNI~~g~~--~~~~~e~i~~a------a~~A~l~d~I~~LP~GydT~vGe--~~LS 639 (703)
.|..-|+|.|+|- |-+++.-. .++- |++.+. --.+.+.||.++.+-.. +.+.+ ..+|
T Consensus 83 RR~L~RTeWG~VhQnP~-------DGLRm~VSAG~NiG-ERlma~G~RHYG~iR~~a~~WL~~VEI~~-~RiDD~PrtFS 153 (258)
T COG4107 83 RRRLLRTEWGFVHQNPR-------DGLRMQVSAGGNIG-ERLMAIGARHYGNIRAEAQDWLEEVEIDL-DRIDDLPRTFS 153 (258)
T ss_pred HHHHhhhccceeecCcc-------ccceeeeccCCccc-hhHHhhhhhhhhhHHHHHHHHHHhcccCc-ccccCcccccc
Confidence 4566899999984 22322211 0221 222221 11234457777654332 33444 6899
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 640 GGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
||.+||+-|||-|...|++.++||||-+||..-.++..+.++.+
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgL 197 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGL 197 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887654
No 370
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=7.2e-24 Score=231.31 Aligned_cols=170 Identities=23% Similarity=0.278 Sum_probs=140.0
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
..|.++||+|+|+++ +++++++||-|..++.||+|||+|||||||+|+++|...|+.|.|.-.-... ...|.++
T Consensus 388 pvi~~~nv~F~y~~~--~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~----~~~y~Qh 461 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDN--PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNK----LPRYNQH 461 (614)
T ss_pred CeEEEeccccCCCCc--chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccccc----chhhhhh
Confidence 359999999999864 5899999999999999999999999999999999999999999997533221 1123333
Q ss_pred eEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCC
Q 005302 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT 657 (703)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ 657 (703)
- ++-..++-|..||+.=--++.-..|+++..+...|+..+.+..|+ ++||+|||-|++.||+++++|.
T Consensus 462 ~----~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~--------~~LS~Gqr~rVlFa~l~~kqP~ 529 (614)
T KOG0927|consen 462 L----AEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM--------SQLSDGQRRRVLFARLAVKQPH 529 (614)
T ss_pred h----HhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch--------hhcccccchhHHHHHHHhcCCc
Confidence 2 334457888888885221213567888999999998776665553 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 658 ILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
||+|||||+|||.++-....++|..-++
T Consensus 530 lLlLDEPtnhLDi~tid~laeaiNe~~G 557 (614)
T KOG0927|consen 530 LLLLDEPTNHLDIETIDALAEAINEFPG 557 (614)
T ss_pred EEEecCCCcCCCchhHHHHHHHHhccCC
Confidence 9999999999999999999999998877
No 371
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=1.2e-23 Score=203.86 Aligned_cols=174 Identities=25% Similarity=0.394 Sum_probs=139.5
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECC-EeCCCCChHHh-hc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG-FPIKEVDIKWL-RG 576 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG-~di~~i~~~~l-R~ 576 (703)
.++++|||.++++ -.+++|+||+|.+||.=+|+||+|+||||++..|+|--.|++|+++++| .|+..++-..+ |.
T Consensus 5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 4789999999985 4689999999999999999999999999999999999999999999999 99999886655 56
Q ss_pred ceEEEccCCcccc-ccHHHHhccCCCCC-------------CCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHH
Q 005302 577 RIGFVGQEPKLFR-MDISSNISYGCTQD-------------IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQ 642 (703)
Q Consensus 577 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~~-------------~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQ 642 (703)
-||==+|.|..|. =|++||+-+....+ ...+++.+.+...++.|.-.. -...||-||
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~---------~A~~LSHGq 152 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDR---------LAALLSHGQ 152 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhh---------hhhhhccch
Confidence 6999999999997 58999996553211 122244455544444332211 114799999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 643 kQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
||++-|+--+.++|++|+||||++++-.+...+.-+.++++.
T Consensus 153 KQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la 194 (249)
T COG4674 153 KQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA 194 (249)
T ss_pred hhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHh
Confidence 999999999999999999999999997666666666555543
No 372
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=1.7e-23 Score=212.17 Aligned_cols=160 Identities=26% Similarity=0.353 Sum_probs=118.4
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEc-cCCccccccHH
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVG-QEPKLFRMDIS 593 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~-Qd~~LF~gTI~ 593 (703)
-++.+||||+||||+.++.+|++|+||||.+|+|.|+..|++|.|.++|.+--+ +.+++-+++++|+ |-..|
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql------ 109 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQL------ 109 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhhee------
Confidence 357899999999999999999999999999999999999999999999987655 5566667777775 33222
Q ss_pred HHhccCCCCCCCHHHHHHHHHHhchHHHHHcCC-----CCcccccCC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCC
Q 005302 594 SNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLP-----SGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATS 666 (703)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP-----~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ILILDEaTS 666 (703)
.++-+--++=++.++.....-++|-+.|. .+++..+.. +.||=|||-|.-||-||+++|+||+|||||=
T Consensus 110 ----~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 110 ----WWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred ----eeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 11111111222223322222222222221 134444544 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCc
Q 005302 667 ALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 667 aLD~~tE~~I~~al~~~~~ 685 (703)
.||......|.+.++..+-
T Consensus 186 gLDV~aq~~ir~Flke~n~ 204 (325)
T COG4586 186 GLDVNAQANIREFLKEYNE 204 (325)
T ss_pred CcchhHHHHHHHHHHHHHH
Confidence 9999999999999876543
No 373
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.89 E-value=1.8e-23 Score=216.20 Aligned_cols=165 Identities=22% Similarity=0.264 Sum_probs=113.6
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh----------------cCCCCCcc-----
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL----------------RLYEPTNG----- 557 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLl----------------gly~p~sG----- 557 (703)
.|+++|- .+|.+ ..++++++ |++++|+||||||||||+++|+ ++..+.+|
T Consensus 3 ~i~~~nf-ksy~~---~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 3 QVIIQGF-KSYKD---QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEEeCc-cCccc---CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 3555553 23753 45788876 8999999999999999999998 44455555
Q ss_pred ---eEEECCEeCCCC---ChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHH--HcCCCCc
Q 005302 558 ---QILIDGFPIKEV---DIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFI--MSLPSGY 629 (703)
Q Consensus 558 ---~I~idG~di~~i---~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I--~~LP~Gy 629 (703)
+|.+++.+-... +...+++.+++++|+..+ .+ ...+.+++..+++..++.+.- ...|+|.
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l-----------~~-~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~ 141 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFL-----------DK-KNVTKNDVMNLLESAGFSRSNPYYIVPQGK 141 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEE-----------CC-eEcCHHHHHHHHHHcCCCCCCCcEEEEcCc
Confidence 555555321100 122355667777766543 32 245677888888877765321 0123332
Q ss_pred cccc-------CC--CCCChHHHHHHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 630 ETLV-------DD--DLLSGGQKQRIAIARAIL----RDPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 630 dT~v-------Ge--~~LSGGQkQRIaLARAL~----r~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
.+.+ ++ ..||||||||++|||||+ ++|+++||||||++||+++.+.+.+.++++.
T Consensus 142 i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~ 209 (243)
T cd03272 142 INSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELS 209 (243)
T ss_pred hHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHh
Confidence 2221 22 489999999999999996 4689999999999999999999999998873
No 374
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.89 E-value=2.6e-23 Score=211.23 Aligned_cols=171 Identities=17% Similarity=0.175 Sum_probs=124.7
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEec-CCcEEEEEcCCCCcHHHHHHHHh-cCCCCCcceEEECCEeCCCCChHHhhc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVN-PGEVVAIAGLSGSGKSTLVNLLL-RLYEPTNGQILIDGFPIKEVDIKWLRG 576 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~-~Ge~vAIVG~SGsGKSTLlkLLl-gly~p~sG~I~idG~di~~i~~~~lR~ 576 (703)
.|+++|.. +|.++ ++++|+.. +|+.++|+||||||||||+++|. ++|.+..+....+ .+...+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 58999998 87632 56777654 59999999999999999999999 4777777777655 2334445556678
Q ss_pred ceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCC-cccccCC--CCCChHHHHHHHHHHHhc
Q 005302 577 RIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSG-YETLVDD--DLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 577 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~G-ydT~vGe--~~LSGGQkQRIaLARAL~ 653 (703)
.|++++|++ +....+++++ ..+.++..++.. ++.| +++.+.. .+||||||||++|||||.
T Consensus 77 ~v~~~f~~~----~~~~~~~r~~---gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~ 139 (213)
T cd03279 77 EVSFTFQLG----GKKYRVERSR---GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALA 139 (213)
T ss_pred EEEEEEEEC----CeEEEEEEec---CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHH
Confidence 899999998 4444455554 445555554331 1222 3444443 489999999999999997
Q ss_pred C----------CCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc----EEEEecchh
Q 005302 654 R----------DPTILILDEATSALDAESEHNIKVATLSNGL----LVKSLHFLS 694 (703)
Q Consensus 654 r----------~p~ILILDEaTSaLD~~tE~~I~~al~~~~~----~~~~~~~~~ 694 (703)
. +|+++||||||++||+++.+.+.+.++++.. ++-.-|-..
T Consensus 140 ~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~ 194 (213)
T cd03279 140 LSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE 194 (213)
T ss_pred hHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH
Confidence 4 6789999999999999999999988876643 344445544
No 375
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=2.5e-23 Score=213.36 Aligned_cols=168 Identities=21% Similarity=0.262 Sum_probs=99.0
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHH-HHHhcCCCCCcceEEEC-C------EeC---CCCChHHhhc-ceEEEc
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLV-NLLLRLYEPTNGQILID-G------FPI---KEVDIKWLRG-RIGFVG 582 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLl-kLLlgly~p~sG~I~id-G------~di---~~i~~~~lR~-~I~~V~ 582 (703)
.++|+|+||+|++||++||+||||||||||+ ..+. .+|++.+. + ..+ ..-+....+. ..++..
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 5799999999999999999999999999995 4443 13443321 0 011 1111111221 234444
Q ss_pred cCCcc-cc--cc---HHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcC
Q 005302 583 QEPKL-FR--MD---ISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILR 654 (703)
Q Consensus 583 Qd~~L-F~--gT---I~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r 654 (703)
|++.. ++ .+ +.+...+... -...++..+ ..+.+..+..+.. .... ..||||||||++|||||++
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~------~~~~l~~~~l~~~-~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRL-LFARVGIRE------RLGFLVDVGLGYL-TLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHH-HhhhhhHHH------HHHHHHHCCCCcc-cccCccCcCCHHHHHHHHHHHHHHh
Confidence 44431 11 12 2222222100 000111111 1233333322211 1222 4799999999999999999
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 655 DP--TILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 655 ~p--~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
+| ++|||||||++||+.+.+.+.+.|+++. -.+=.-|-+..
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~ 201 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDT 201 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHH
Confidence 98 5999999999999999999999987642 24455566554
No 376
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=4.6e-22 Score=200.42 Aligned_cols=163 Identities=29% Similarity=0.392 Sum_probs=126.6
Q ss_pred CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHH
Q 005302 514 MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDIS 593 (703)
Q Consensus 514 ~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~ 593 (703)
+.++|+||||++++||+++|||++|||||||+|+|+|.|+|++|+|.++|.--.-++.. .|+-| +-|-|
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg-----~Gf~p------elTGr 107 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELG-----AGFDP------ELTGR 107 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcc-----cCCCc------ccchH
Confidence 46899999999999999999999999999999999999999999999999543333211 22222 35789
Q ss_pred HHhcc-----CCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCC
Q 005302 594 SNISY-----GCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSAL 668 (703)
Q Consensus 594 eNI~~-----g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaL 668 (703)
|||.+ |-....-++.+.+..+-|.+.|||.. | | ++.|.|.+-|++.|=|.--+|+|||+||+.|..
T Consensus 108 eNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-P------v--ktYSSGM~aRLaFsia~~~~pdILllDEvlavG 178 (249)
T COG1134 108 ENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-P------V--KTYSSGMYARLAFSVATHVEPDILLLDEVLAVG 178 (249)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-c------h--hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcC
Confidence 99963 32223446777888889999999753 3 1 579999999999999999999999999999999
Q ss_pred CHH----HHHHHHHHHHhCCcEEEEecchhHH
Q 005302 669 DAE----SEHNIKVATLSNGLLVKSLHFLSLY 696 (703)
Q Consensus 669 D~~----tE~~I~~al~~~~~~~~~~~~~~~~ 696 (703)
|+. ..+++++-+++..-.|-.-|-+..-
T Consensus 179 D~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I 210 (249)
T COG1134 179 DAAFQEKCLERLNELVEKNKTIVLVSHDLGAI 210 (249)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEECCHHHH
Confidence 995 4445555555656666656655443
No 377
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.87 E-value=7.5e-23 Score=213.33 Aligned_cols=169 Identities=27% Similarity=0.362 Sum_probs=114.2
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh-----c-CC----CCCcc-----------eEEECCEeCCCCChHH-
Q 005302 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL-----R-LY----EPTNG-----------QILIDGFPIKEVDIKW- 573 (703)
Q Consensus 516 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLl-----g-ly----~p~sG-----------~I~idG~di~~i~~~~- 573 (703)
.-|+|+|++||.|+.++|+|+||||||||++-++ + +. .|..+ -|.+|..||..-....
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999998653 1 22 13333 3666666664422111
Q ss_pred ---------hhc----------------ceEEEccCCc-cccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCC
Q 005302 574 ---------LRG----------------RIGFVGQEPK-LFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPS 627 (703)
Q Consensus 574 ---------lR~----------------~I~~V~Qd~~-LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~ 627 (703)
+|+ .+.|..++.. ..+.|+.||+.|+.. ....++..++++..++
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~-~~~~~~~~~~L~~vgL--------- 158 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFEN-IPKIARKLQTLCDVGL--------- 158 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHh-hhhHHHHHHHHHHcCC---------
Confidence 111 1334444443 246688888887742 2222333333333333
Q ss_pred CcccccCC--CCCChHHHHHHHHHHHhcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 628 GYETLVDD--DLLSGGQKQRIAIARAILRD---PTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 628 GydT~vGe--~~LSGGQkQRIaLARAL~r~---p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
+|. ..+. ..||||||||++|||||.++ |+++||||||++||+++.+.+.+.++++. -++-.-|-+..
T Consensus 159 ~~l-~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~ 234 (261)
T cd03271 159 GYI-KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDV 234 (261)
T ss_pred chh-hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 221 2344 58999999999999999996 79999999999999999999999888653 34555565543
No 378
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.86 E-value=7.5e-22 Score=237.80 Aligned_cols=187 Identities=23% Similarity=0.392 Sum_probs=154.6
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC-CChHHhhc
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE-VDIKWLRG 576 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~-i~~~~lR~ 576 (703)
..+..+|++..|+... . +.+++|+.|++||+.++-|++||||||++|+|.|..+|++|++.++|.++.. .+.+..|+
T Consensus 563 ~~~~~~~L~k~y~~~~-~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKD-G-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchh-h-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 3588999999998653 3 8999999999999999999999999999999999999999999999999975 45567999
Q ss_pred ceEEEccCCcccc-ccHHHHhccCCC-CCCCHHH----HHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005302 577 RIGFVGQEPKLFR-MDISSNISYGCT-QDIKQQD----IEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (703)
Q Consensus 577 ~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~~e~----i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (703)
++||.||++.|++ -|.||.+.+..- +.....+ +...++..++.++.. +. .+++|||+|.|+++|-
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~-------~~--~~~ySgG~kRkLs~ai 711 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYAN-------KQ--VRTYSGGNKRRLSFAI 711 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhc-------cc--hhhCCCcchhhHHHHH
Confidence 9999999999987 789999976531 1223333 455566666655432 22 3589999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcEEEEecchhH
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVATLSNGLLVKSLHFLSL 695 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~~~~~~~~~~ 695 (703)
|++-+|++++|||||+++||.+++.+-+.|++..+-.|+.+.-|-
T Consensus 712 alig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSH 756 (885)
T KOG0059|consen 712 ALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSH 756 (885)
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 999999999999999999999999999888877765555554443
No 379
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.86 E-value=4.8e-22 Score=206.93 Aligned_cols=154 Identities=20% Similarity=0.278 Sum_probs=113.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCC-cceEEECCE-eCCCCC--hHHhhcceEEEccCCcc----------ccccHH
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRLYEPT-NGQILIDGF-PIKEVD--IKWLRGRIGFVGQEPKL----------FRMDIS 593 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgly~p~-sG~I~idG~-di~~i~--~~~lR~~I~~V~Qd~~L----------F~gTI~ 593 (703)
...++||||||||||||++.|++++.|+ .|++...|. |+-..+ .+..+..+++++|++.- -.-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6799999999999999999999999886 568998887 542211 12234589999999632 146788
Q ss_pred HHhccCCC-------CCCCHHHHHHHHHHhchH----H---------HHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 594 SNISYGCT-------QDIKQQDIEWAAKQAYAH----D---------FIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 594 eNI~~g~~-------~~~~~e~i~~aa~~A~l~----d---------~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
+||..+.. .....+++.++++.+++. . .|..++.-.+..+ ..||||||||++|||||.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~--~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESL--TELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccc--cccCHHHHHHHHHHHHHH
Confidence 88866431 123457788888888764 0 1111111111111 479999999999999997
Q ss_pred ----CCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 654 ----RDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 654 ----r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
++|++++|||||++||+++.+.+.+.|+++
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~ 216 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTH 216 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 688999999999999999999999999875
No 380
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.85 E-value=4.5e-22 Score=202.05 Aligned_cols=159 Identities=19% Similarity=0.217 Sum_probs=117.7
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhh-cc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLR-GR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR-~~ 577 (703)
.|+++|.- +|.+ ..+++++++ +.++|+|||||||||++++|. .++|.+.. ..| ++
T Consensus 5 ~l~l~nfk-~~~~---~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYAG---EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKK 60 (212)
T ss_pred EEEEECcc-cCCC---CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----Hhhhhh
Confidence 47788875 7863 468999987 899999999999999999997 44565442 233 67
Q ss_pred eEEEccCCccccc-cHHHHhccCCCCCCCHHHHH-----HHHHH----hchHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005302 578 IGFVGQEPKLFRM-DISSNISYGCTQDIKQQDIE-----WAAKQ----AYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (703)
Q Consensus 578 I~~V~Qd~~LF~g-TI~eNI~~g~~~~~~~e~i~-----~aa~~----A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (703)
+++++|+..+++. |.++++.++.. ....+..+ ..... .+--..+.+||++.++.++ .||||||||++
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~--~lS~G~~~r~~ 137 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQE-IIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS--NLSGGEKTLSS 137 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEe-CCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh--hcCHHHHHHHH
Confidence 9999999887665 78888887743 11111110 00000 0111245567877777654 69999999999
Q ss_pred HHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 648 IARAIL----RDPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 648 LARAL~----r~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
||||++ ++|++++|||||++||+++.+.+.+.+++..
T Consensus 138 la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~ 178 (212)
T cd03274 138 LALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT 178 (212)
T ss_pred HHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc
Confidence 999996 4589999999999999999999999998874
No 381
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.84 E-value=1.5e-21 Score=231.63 Aligned_cols=184 Identities=24% Similarity=0.399 Sum_probs=145.3
Q ss_pred EEEEEEEEcCC-CCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC--CCcceEEECCEeCCCCChHHhhcc
Q 005302 501 DFVDVSFRYSS-REMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE--PTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 501 ~~~nVsF~Y~~-~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~--p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
..+|+.|.=+. ++...+|+|||=-++||..+|++|+||+|||||+++|+|=-. ..+|+|+|||.|..+ +.+++.
T Consensus 789 ~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~ 865 (1391)
T KOG0065|consen 789 YWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARV 865 (1391)
T ss_pred EEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccc
Confidence 34444444321 134679999999999999999999999999999999998643 257999999999976 789999
Q ss_pred eEEEccCCc-cccccHHHHhccCC----CCCCCHHH----HHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHH
Q 005302 578 IGFVGQEPK-LFRMDISSNISYGC----TQDIKQQD----IEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRI 646 (703)
Q Consensus 578 I~~V~Qd~~-LF~gTI~eNI~~g~----~~~~~~e~----i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRI 646 (703)
+|||.|+|. +=.-||||-+.|.. |+++++|| ++++.+..++.+. =|..||+ ..||..||.|+
T Consensus 866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrL 938 (1391)
T KOG0065|consen 866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRL 938 (1391)
T ss_pred cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhcee
Confidence 999998764 66689999997653 33555544 4555555555433 4667776 68999999999
Q ss_pred HHHHHhcCCC-CEEEEeCCCCCCCHHHHHHHHHHHHhCCc----EEEEecchh
Q 005302 647 AIARAILRDP-TILILDEATSALDAESEHNIKVATLSNGL----LVKSLHFLS 694 (703)
Q Consensus 647 aLARAL~r~p-~ILILDEaTSaLD~~tE~~I~~al~~~~~----~~~~~~~~~ 694 (703)
.||=-|..|| .||+||||||+||+++...|++.++++.+ .+=..|--|
T Consensus 939 TIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS 991 (1391)
T KOG0065|consen 939 TIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPS 991 (1391)
T ss_pred eEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCc
Confidence 9999999999 99999999999999999999999998765 344455433
No 382
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.84 E-value=5.1e-21 Score=193.25 Aligned_cols=136 Identities=24% Similarity=0.310 Sum_probs=105.2
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHh----cCCCCCcceEEECCEeCCCCChHHhhcceEEEccCC-----cccc-cc
Q 005302 522 NISVNPGEVVAIAGLSGSGKSTLVNLLL----RLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEP-----KLFR-MD 591 (703)
Q Consensus 522 sl~I~~Ge~vAIVG~SGsGKSTLlkLLl----gly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~-----~LF~-gT 591 (703)
++++.+| +++|+||||||||||++.|. |...|++|.+.-+...+. ....+..|++++|++ .++. -|
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~---~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIR---EGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHh---CCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 4667788 99999999999999999994 999998888762222222 234567899999998 4433 29
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHH------HHHHHHhcCCCCEEEEeCCC
Q 005302 592 ISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR------IAIARAILRDPTILILDEAT 665 (703)
Q Consensus 592 I~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQR------IaLARAL~r~p~ILILDEaT 665 (703)
+.||+.+. + ++++.+.+ +.. ...|||||+|| ++||||+..+|++++|||||
T Consensus 93 ~~~~~~~~-~----~~~~~~~~----------------~~~--~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~ 149 (204)
T cd03240 93 ILENVIFC-H----QGESNWPL----------------LDM--RGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPT 149 (204)
T ss_pred Hhhceeee-c----hHHHHHHH----------------hcC--ccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCc
Confidence 99999876 2 33443322 111 14799999996 79999999999999999999
Q ss_pred CCCCHHHHH-HHHHHHHhCC
Q 005302 666 SALDAESEH-NIKVATLSNG 684 (703)
Q Consensus 666 SaLD~~tE~-~I~~al~~~~ 684 (703)
++||+++.. .+.+.++++.
T Consensus 150 ~~LD~~~~~~~l~~~l~~~~ 169 (204)
T cd03240 150 TNLDEENIEESLAEIIEERK 169 (204)
T ss_pred cccCHHHHHHHHHHHHHHHH
Confidence 999999988 8888887654
No 383
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.81 E-value=8.9e-20 Score=202.30 Aligned_cols=184 Identities=26% Similarity=0.421 Sum_probs=149.0
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC-hHHhhcc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD-IKWLRGR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~-~~~lR~~ 577 (703)
.++++|++.. ..++|+||++.+||.++|.|--|||+|-++..|.|..++.+|+|.+||++++--+ .+..+.-
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 4678887632 2579999999999999999999999999999999999999999999999987666 5578889
Q ss_pred eEEEccCC----ccccccHHHHhccCCCCCCCHH-HHHHHHHHhchHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHH
Q 005302 578 IGFVGQEP----KLFRMDISSNISYGCTQDIKQQ-DIEWAAKQAYAHDFIMSLPSGYETLVDD-DLLSGGQKQRIAIARA 651 (703)
Q Consensus 578 I~~V~Qd~----~LF~gTI~eNI~~g~~~~~~~e-~i~~aa~~A~l~d~I~~LP~GydT~vGe-~~LSGGQkQRIaLARA 651 (703)
|+|||-|= .+...||++||++..-+..... .+....+.+-+.+++.+|.-.-...--. .+||||-+|++.|||.
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarw 415 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARW 415 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHH
Confidence 99999764 3677899999998732111111 4667777778888888874322222112 4899999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcEEEE
Q 005302 652 ILRDPTILILDEATSALDAESEHNIKVATLSNGLLVKS 689 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~~~~ 689 (703)
|+.+|+||||||||-++|.-+.+.|.+.|+++.+-=++
T Consensus 416 L~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~a 453 (500)
T COG1129 416 LATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKA 453 (500)
T ss_pred HhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCE
Confidence 99999999999999999999999999999877654333
No 384
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.1e-19 Score=193.20 Aligned_cols=167 Identities=29% Similarity=0.383 Sum_probs=127.6
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
-+-+.||+|.||+. .|.+++++|-|.--+.||||||+|.|||||++||.|-++|++|+..= ..|=+|
T Consensus 586 vLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RK-----------nhrL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRK-----------NHRLRI 652 (807)
T ss_pred eeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhc-----------cceeee
Confidence 47789999999974 68999999999999999999999999999999999999999998753 335568
Q ss_pred EEEccCCc--c-ccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCC
Q 005302 579 GFVGQEPK--L-FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRD 655 (703)
Q Consensus 579 ~~V~Qd~~--L-F~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~ 655 (703)
|.-.|..- | -..|-.|-+.-. -+.+.++.+.|+-.-|+... -+| |--..||||||-|+++|---++.
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~--FNlpyq~ARK~LG~fGL~sH-------AHT-ikikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRK--FNLPYQEARKQLGTFGLASH-------AHT-IKIKDLSGGQKARVALAELALGG 722 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHh--cCCChHHHHHHhhhhhhhhc-------cce-EeeeecCCcchHHHHHHHHhcCC
Confidence 88777642 1 222333333221 03445555555544443221 011 11147999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhCCcEEE
Q 005302 656 PTILILDEATSALDAESEHNIKVATLSNGLLVK 688 (703)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~al~~~~~~~~ 688 (703)
|+||||||||.+||.++-..+-++|...++-|-
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIney~GgVi 755 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINEYNGGVI 755 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHhccCcEE
Confidence 999999999999999999999999998877653
No 385
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.77 E-value=4e-19 Score=184.62 Aligned_cols=157 Identities=19% Similarity=0.194 Sum_probs=109.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEe-C-C-----CCChHHhhcceEEEccCC--ccccccHHHHhc-c
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFP-I-K-----EVDIKWLRGRIGFVGQEP--KLFRMDISSNIS-Y 598 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~d-i-~-----~i~~~~lR~~I~~V~Qd~--~LF~gTI~eNI~-~ 598 (703)
..++|+||+|||||||+..|.++..++.|++..++.+ + . ..+.....-.+.+..|++ .++..+++++-. |
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999999888888765432 1 1 111123333455555543 345555555432 1
Q ss_pred C-CCCCCCHHHHHHHHHHhchHHHHHc--CCCCcccccCC-----------CCCChHHHHHHHHHHHhcC----CCCEEE
Q 005302 599 G-CTQDIKQQDIEWAAKQAYAHDFIMS--LPSGYETLVDD-----------DLLSGGQKQRIAIARAILR----DPTILI 660 (703)
Q Consensus 599 g-~~~~~~~e~i~~aa~~A~l~d~I~~--LP~GydT~vGe-----------~~LSGGQkQRIaLARAL~r----~p~ILI 660 (703)
+ +....+.+++.+.++..+++.+... +|+|--+.+.+ ..||||||||++||||+.. +|+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 1 1225778888899999998532111 12222222211 3699999999999999975 499999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 661 LDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 661 LDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
|||||++||+++...+.+.|+++.+
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~ 207 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAG 207 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988753
No 386
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.77 E-value=3.1e-18 Score=187.57 Aligned_cols=187 Identities=23% Similarity=0.324 Sum_probs=119.3
Q ss_pred CCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhc
Q 005302 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRG 576 (703)
Q Consensus 497 ~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~ 576 (703)
...+.++|+|++|++ .++++|..|++.+|++++|+|++||||||+++.+.|-..|..-++-+-=. -+++....+..
T Consensus 73 s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~l-s~e~~ps~~~a 148 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLL-SREIEPSEKQA 148 (614)
T ss_pred cccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhh-cccCCCchHHH
Confidence 346999999999985 46999999999999999999999999999999999999886554432110 01111111111
Q ss_pred ceEEEccCCccccccH-------HHHhccCCCCCCCHHHHHH---HHHHhchHHHH----HcC-CCCcccccCC---CCC
Q 005302 577 RIGFVGQEPKLFRMDI-------SSNISYGCTQDIKQQDIEW---AAKQAYAHDFI----MSL-PSGYETLVDD---DLL 638 (703)
Q Consensus 577 ~I~~V~Qd~~LF~gTI-------~eNI~~g~~~~~~~e~i~~---aa~~A~l~d~I----~~L-P~GydT~vGe---~~L 638 (703)
+ |...-+..+- .|+..-.++ +.+.++..+ -+...+.+.+= +-| ..|.....-+ .+|
T Consensus 149 -v----~~v~~~~~~e~~rle~~~E~l~~~~d-~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~ 222 (614)
T KOG0927|consen 149 -V----QAVVMETDHERKRLEYLAEDLAQACD-DKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDL 222 (614)
T ss_pred -H----HHHhhhhHHHHHHHHHHHHHHHhhcc-chhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhcc
Confidence 1 1111111111 223322211 111222211 11111111110 000 1233332223 389
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc--EEEEecch
Q 005302 639 SGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL--LVKSLHFL 693 (703)
Q Consensus 639 SGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~--~~~~~~~~ 693 (703)
|||||-|++|||||+.+|++|+|||||.|||.++-.-+.+-|.+... +|-.+|.-
T Consensus 223 SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~Q 279 (614)
T KOG0927|consen 223 SGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQ 279 (614)
T ss_pred CchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecch
Confidence 99999999999999999999999999999999999999999877654 78888843
No 387
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.76 E-value=2.5e-18 Score=187.49 Aligned_cols=176 Identities=26% Similarity=0.451 Sum_probs=142.6
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeC-CCCChHHhhc-
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI-KEVDIKWLRG- 576 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di-~~i~~~~lR~- 576 (703)
-++++|++..=.. ....+++|||+|.+||.++|.|-+|-|-+.|+..|+|+.+|.+|+|.++|+|+ ...+...+|+
T Consensus 257 vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 257 VLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred EEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 4899999876432 24689999999999999999999999999999999999999999999999997 6667777664
Q ss_pred ceEEEccCC----ccccccHHHHhccCCCCC--------CCHHHHHHHHHHhchHHHHHcCCCCcccccC-C----CCCC
Q 005302 577 RIGFVGQEP----KLFRMDISSNISYGCTQD--------IKQQDIEWAAKQAYAHDFIMSLPSGYETLVD-D----DLLS 639 (703)
Q Consensus 577 ~I~~V~Qd~----~LF~gTI~eNI~~g~~~~--------~~~e~i~~aa~~A~l~d~I~~LP~GydT~vG-e----~~LS 639 (703)
-+||||.|- -..+.|+.||+.+..-.. .+..++.+.++ +-|++ ||-.-. . .+||
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~----fdVr~~~~~~~a~~LS 405 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEE----FDVRAPSPDAPARSLS 405 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHH----cCccCCCCCcchhhcC
Confidence 599999887 468899999998775311 23344433332 33443 333322 2 4899
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 640 GGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
||+.||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+..+
T Consensus 406 GGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~ 451 (501)
T COG3845 406 GGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD 451 (501)
T ss_pred CcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999875543
No 388
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.76 E-value=2.6e-19 Score=170.91 Aligned_cols=164 Identities=23% Similarity=0.345 Sum_probs=132.8
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
++++||+-. .-|--+|.++.+||.+-+|||+|||||||+.-|.|+. |-+|+|.++|.|+..+...++-++=+
T Consensus 4 ~qln~v~~~-------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeecccccc-------ccccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 567777532 2356689999999999999999999999999999997 57899999999999999999999989
Q ss_pred EEccCC-ccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcC--
Q 005302 580 FVGQEP-KLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILR-- 654 (703)
Q Consensus 580 ~V~Qd~-~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r-- 654 (703)
|..|+. -.|...+-.-+++..|...--+++.++|++-+++| .+|. +.||||++||+-+|-..++
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~D-----------KL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccc-----------hhhhhhhhcCcccceeeEEeEEEEEec
Confidence 988764 47999999999998763333345555666555544 3444 5899999999999988876
Q ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 005302 655 -----DPTILILDEATSALDAESEHNIKVATLS 682 (703)
Q Consensus 655 -----~p~ILILDEaTSaLD~~tE~~I~~al~~ 682 (703)
..++|++|||-+.||...+...-..|.+
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~ 177 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSA 177 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHH
Confidence 2468999999999999998877666553
No 389
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.76 E-value=3e-18 Score=213.30 Aligned_cols=180 Identities=23% Similarity=0.323 Sum_probs=118.6
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHH---------HHhcCCCCCcc--------eEEE
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVN---------LLLRLYEPTNG--------QILI 561 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlk---------LLlgly~p~sG--------~I~i 561 (703)
.++++|++. ..|+|+|++|++||.++|+|+||||||||++ .|.|...|..+ -|.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 588888851 3699999999999999999999999999999 66665433211 2455
Q ss_pred CCEeCCCCCh----------HHhh---------cce-----EEEccC--------------------Cc-----------
Q 005302 562 DGFPIKEVDI----------KWLR---------GRI-----GFVGQE--------------------PK----------- 586 (703)
Q Consensus 562 dG~di~~i~~----------~~lR---------~~I-----~~V~Qd--------------------~~----------- 586 (703)
|-.++..-.. +.+| +.. .+.+|. ..
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 5555443211 1334 111 122221 11
Q ss_pred -------cc-cccHHHHhccCCCCCC-----CHHHHHHHHHHhchHHHHHcCCCCcccc-cCC--CCCChHHHHHHHHHH
Q 005302 587 -------LF-RMDISSNISYGCTQDI-----KQQDIEWAAKQAYAHDFIMSLPSGYETL-VDD--DLLSGGQKQRIAIAR 650 (703)
Q Consensus 587 -------LF-~gTI~eNI~~g~~~~~-----~~e~i~~aa~~A~l~d~I~~LP~GydT~-vGe--~~LSGGQkQRIaLAR 650 (703)
.+ .-||.||+.++.. ++ +.+++.+.+ +.+..+ |++.. .+. .+||||||||++|||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~-ea~~~f~~~~~i~~~l------~~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAr 822 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAY-EAEKFFLDEPSIHEKI------HALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAY 822 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHH-HHHHcccChHHHHHHH------HHHHHc--CCcchhhcCccccCCHHHHHHHHHHH
Confidence 22 2478888887632 11 122333322 122322 45443 454 589999999999999
Q ss_pred Hhc---CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 651 AIL---RDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 651 AL~---r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
||+ ++|++|||||||++||+++.+++.+.|+++. -++-.-|-+..
T Consensus 823 aL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~ 874 (1809)
T PRK00635 823 ELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHV 874 (1809)
T ss_pred HHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 998 6999999999999999999999999987653 34555566553
No 390
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=2.5e-18 Score=187.40 Aligned_cols=168 Identities=24% Similarity=0.271 Sum_probs=139.3
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
..+++.+|+|.|++++ ++.+.+++++++.-+++++||++|+||||++|++.|-..|+.|.+-+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 3699999999998763 5899999999999999999999999999999999999999999998866 677
Q ss_pred eEEEccCCccc-cccHH--HH-hccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 578 IGFVGQEPKLF-RMDIS--SN-ISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 578 I~~V~Qd~~LF-~gTI~--eN-I~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
|+|-.|.-+=| +-.+. |= -+.+ | .-++|++++.|..-|++..+..-+ =.+||||||=|+++|-...
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~-p-G~~~ee~r~hl~~~Gl~g~la~~s--------i~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSF-P-GKTEEEIRRHLGSFGLSGELALQS--------IASLSGGQKSRVAFAACTW 498 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhC-C-CCCHHHHHHHHHhcCCCchhhhcc--------ccccCCcchhHHHHHHHhc
Confidence 88888865432 21111 11 1122 3 448999999999998877765432 1369999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcEE
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNGLLV 687 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~~ 687 (703)
.+|.+|+|||||.+||.++-...-++|+.-++-|
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGV 532 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGV 532 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhcCCcE
Confidence 9999999999999999999999999999887655
No 391
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.74 E-value=5.8e-18 Score=202.78 Aligned_cols=188 Identities=24% Similarity=0.292 Sum_probs=114.5
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh---------cCCCCCcceEEECCE-----
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL---------RLYEPTNGQILIDGF----- 564 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLl---------gly~p~sG~I~idG~----- 564 (703)
.|+++|++. ..|+|+|++|++||.++|+|+||||||||++-++ +-..|..+...++|.
T Consensus 614 ~L~v~~l~~--------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 685 (943)
T PRK00349 614 FLKLKGARE--------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDK 685 (943)
T ss_pred eEEecCCcc--------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCc
Confidence 588888851 2589999999999999999999999999998654 222233344444443
Q ss_pred -------eCCC---------CC-hHHhhcc---------eEEEccCCcccc-----------ccHHHHhccCCCC-----
Q 005302 565 -------PIKE---------VD-IKWLRGR---------IGFVGQEPKLFR-----------MDISSNISYGCTQ----- 602 (703)
Q Consensus 565 -------di~~---------i~-~~~lR~~---------I~~V~Qd~~LF~-----------gTI~eNI~~g~~~----- 602 (703)
|+.. .+ .+.+|.. .+|.++.-...+ |+|..|+.|..+-
T Consensus 686 ~v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~ 765 (943)
T PRK00349 686 VIDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCD 765 (943)
T ss_pred eEEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCc
Confidence 2210 00 1222222 233333322221 3444444442110
Q ss_pred -----------------CCCHHH-----HHHHHHH-------hchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHH
Q 005302 603 -----------------DIKQQD-----IEWAAKQ-------AYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARA 651 (703)
Q Consensus 603 -----------------~~~~e~-----i~~aa~~-------A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARA 651 (703)
..+-.+ +.++++. ....+.+..+..||.+ ++. ..||||||||+.||||
T Consensus 766 ~C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i~~~l~~L~~vgL~~l~-l~~~~~tLSgGEkQRl~LAra 844 (943)
T PRK00349 766 VCKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVDVGLGYIK-LGQPATTLSGGEAQRVKLAKE 844 (943)
T ss_pred cccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhhhHHHHHHHHCCCCccc-ccCCcccCCHHHHHHHHHHHH
Confidence 001111 1111111 1122344444444433 344 5899999999999999
Q ss_pred hcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 652 ILRDP---TILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 652 L~r~p---~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
|.++| +++||||||++||+++.+.+.+.|+++. -++-.-|-+..
T Consensus 845 L~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~ 895 (943)
T PRK00349 845 LSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDV 895 (943)
T ss_pred HhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 99999 9999999999999999999999988753 34555576654
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=5.3e-18 Score=184.84 Aligned_cols=164 Identities=23% Similarity=0.264 Sum_probs=117.0
Q ss_pred CCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhc
Q 005302 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRG 576 (703)
Q Consensus 497 ~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~ 576 (703)
..+|...|.+.+|++ +.+|++-++++..|-.+++||++|+|||||++.|.. |+|.+ -++. ++.|.
T Consensus 78 ~~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~--f~ve----qE~~g 142 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSG--FHVE----QEVRG 142 (582)
T ss_pred ccceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCc--cCch----hheec
Confidence 346999999999985 469999999999999999999999999999999998 44432 2221 12222
Q ss_pred ceEEEccCCccccccHHHHhccCCC---CCCCHHHHHH-HHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 577 RIGFVGQEPKLFRMDISSNISYGCT---QDIKQQDIEW-AAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 577 ~I~~V~Qd~~LF~gTI~eNI~~g~~---~~~~~e~i~~-aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
.-....|+. +=+++-+.-...-++ ...+.++|.. ++.-.|..++.+.+|. +.||||=|=|++|||||
T Consensus 143 ~~t~~~~~~-l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt--------~slSGGWrMrlaLARAl 213 (582)
T KOG0062|consen 143 DDTEALQSV-LESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT--------KSLSGGWRMRLALARAL 213 (582)
T ss_pred cchHHHhhh-hhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc--------cccCcchhhHHHHHHHH
Confidence 222222332 223333322222110 0113455555 5556666666665552 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
.++|+||+|||||.+||..+-.-..+-|...+
T Consensus 214 f~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~ 245 (582)
T KOG0062|consen 214 FAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK 245 (582)
T ss_pred hcCCCEEeecCCcccchhHHHHHHHHHHhhCC
Confidence 99999999999999999999999999998877
No 393
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.73 E-value=1.2e-17 Score=167.98 Aligned_cols=141 Identities=21% Similarity=0.189 Sum_probs=94.3
Q ss_pred ceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE---eCCCCChHHhhcceEEEccCCccccccHHH
Q 005302 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF---PIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (703)
Q Consensus 518 L~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~---di~~i~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (703)
++++++++.+| ..+|+||+|||||||+..|.-.+.++.+ ..--|. ++-..+. -...|.+++|+.-++.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~--~~~~i~~~~~~~~~~~----- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGE--SSAKITVTLKNQGLDA----- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCC--CeEEEEEEEEcCCccC-----
Confidence 35677777776 7799999999999999998754433321 111122 2222121 2456888888876655
Q ss_pred HhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh----cCCCCEEEEeCCCCCCCH
Q 005302 595 NISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI----LRDPTILILDEATSALDA 670 (703)
Q Consensus 595 NI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL----~r~p~ILILDEaTSaLD~ 670 (703)
| + ....+ .+.+.+++.. ..-.+..+ .+||||||||++||||+ +.+|++++|||||++||.
T Consensus 83 ~-----~--~~~~~------~~~~~~~l~~-~~~~~~~~--~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~ 146 (198)
T cd03276 83 N-----P--LCVLS------QDMARSFLTS-NKAAVRDV--KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDM 146 (198)
T ss_pred C-----c--CCHHH------HHHHHHHhcc-ccccCCcc--cccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCH
Confidence 2 1 11111 1233344443 22222222 47999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHHhC
Q 005302 671 ESEHNIKVATLSN 683 (703)
Q Consensus 671 ~tE~~I~~al~~~ 683 (703)
.+...+.+.|++.
T Consensus 147 ~~~~~~~~~l~~~ 159 (198)
T cd03276 147 VNRKISTDLLVKE 159 (198)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888764
No 394
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.72 E-value=2e-17 Score=177.89 Aligned_cols=153 Identities=26% Similarity=0.385 Sum_probs=109.8
Q ss_pred EEEEEcCCCCCcccceeeeEEecC-----CcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 504 DVSFRYSSREMVPVLQHVNISVNP-----GEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 504 nVsF~Y~~~~~~~vL~~isl~I~~-----Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
+--++|++- ..-+.+..|++++ ||.++++||+|-||||++|+|.|..+|++|+ ..++ .|
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~v 403 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KV 403 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eE
Confidence 334566642 3456667776654 6889999999999999999999999999998 2222 36
Q ss_pred EEEccCCc-cccccHHHHhccCCCCCCCHHHHH-HHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcC
Q 005302 579 GFVGQEPK-LFRMDISSNISYGCTQDIKQQDIE-WAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILR 654 (703)
Q Consensus 579 ~~V~Qd~~-LF~gTI~eNI~~g~~~~~~~e~i~-~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r 654 (703)
+|=||-.. -|+||+.+=+.--.+...+....+ +.++ |..++-.+.. ..||||+-||+|||-||.|
T Consensus 404 SyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~-----------pl~l~~i~e~~v~~LSGGELQRvaIaa~L~r 472 (591)
T COG1245 404 SYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVK-----------PLNLEDLLERPVDELSGGELQRVAIAAALSR 472 (591)
T ss_pred eecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcC-----------ccchHHHHhcccccCCchhHHHHHHHHHhcc
Confidence 77777432 288999887654332112222222 2333 3334333333 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 655 DPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
++++.+||||+++||.+..-.+.++|++.
T Consensus 473 eADlYllDEPSA~LDvEqR~~vakvIRR~ 501 (591)
T COG1245 473 EADLYLLDEPSAYLDVEQRIIVAKVIRRF 501 (591)
T ss_pred ccCEEEecCchhhccHHHHHHHHHHHHHH
Confidence 99999999999999998877777777653
No 395
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.72 E-value=6.5e-18 Score=152.05 Aligned_cols=76 Identities=24% Similarity=0.138 Sum_probs=72.2
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHH
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (703)
.++|+++||++++||.++|+||||||||||++++. +|+|.++|.|+..++.++.++.+++++|+ +|++||+|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 36899999999999999999999999999999987 89999999999999999999999999888 99999999
Q ss_pred Hhcc
Q 005302 595 NISY 598 (703)
Q Consensus 595 NI~~ 598 (703)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9987
No 396
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=3.9e-17 Score=195.37 Aligned_cols=178 Identities=26% Similarity=0.332 Sum_probs=113.2
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh------cCCC----C-----------Ccc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL------RLYE----P-----------TNG 557 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLl------gly~----p-----------~sG 557 (703)
.++++|++. ..|+|+|++|++||.++|+|+||||||||++=.+ .+.. | -.-
T Consensus 612 ~l~l~~~~~--------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (924)
T TIGR00630 612 FLTLKGARE--------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDK 683 (924)
T ss_pred eEEEEeCcc--------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCc
Confidence 589999862 2599999999999999999999999999998222 1111 1 122
Q ss_pred eEEECCEeCCCCC----------hHHhhcceEEEcc------CCcccc--------------------------------
Q 005302 558 QILIDGFPIKEVD----------IKWLRGRIGFVGQ------EPKLFR-------------------------------- 589 (703)
Q Consensus 558 ~I~idG~di~~i~----------~~~lR~~I~~V~Q------d~~LF~-------------------------------- 589 (703)
-|.||=.|+..-. .+.+|+..+-.++ .+-.||
T Consensus 684 ~v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~ 763 (924)
T TIGR00630 684 VIHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCE 763 (924)
T ss_pred eEEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCC
Confidence 3566666654211 2335555543332 222232
Q ss_pred --------------------------ccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChH
Q 005302 590 --------------------------MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGG 641 (703)
Q Consensus 590 --------------------------gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGG 641 (703)
.||.|++.|+.. ... .....+.+..+..+|.+ ++. ..||||
T Consensus 764 ~C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~-~~~---------i~~~l~~L~~~gL~~l~-l~~~~~tLSgG 832 (924)
T TIGR00630 764 VCKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEA-VPS---------ISRKLQTLCDVGLGYIK-LGQPATTLSGG 832 (924)
T ss_pred CcCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHh-ccc---------hhHHHHHHHHcCCCchh-hcCccccCCHH
Confidence 233333333311 000 01112333444334433 354 589999
Q ss_pred HHHHHHHHHHhcC---CCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 642 QKQRIAIARAILR---DPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 642 QkQRIaLARAL~r---~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
|+||++|||||.+ +|+++||||||++||+++.+.+.+.|+++. -++-.-|-+..
T Consensus 833 e~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~ 893 (924)
T TIGR00630 833 EAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDV 893 (924)
T ss_pred HHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 9999999999997 599999999999999999999999988763 34455565543
No 397
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.68 E-value=1e-16 Score=170.50 Aligned_cols=171 Identities=25% Similarity=0.369 Sum_probs=126.5
Q ss_pred CCCCcEEEEEEEEEcCCCC-----------------------CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC
Q 005302 495 RLMGRIDFVDVSFRYSSRE-----------------------MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 495 ~~~g~I~~~nVsF~Y~~~~-----------------------~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl 551 (703)
...+.+.|+|++-.|.+.- +..+|+|+||+|+||+.++|||+||+||||++.+++|.
T Consensus 353 ~L~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~ 432 (593)
T COG2401 353 KLEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA 432 (593)
T ss_pred ccCCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHH
Confidence 3556788888887774310 14689999999999999999999999999999999985
Q ss_pred --------CCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHH
Q 005302 552 --------YEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIM 623 (703)
Q Consensus 552 --------y~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~ 623 (703)
|.|++|.|.+--..+..+-+.+ -||.+=.-||.|-+.-- .-|..--.+.+..||+.|-+.
T Consensus 433 ~~~~~ee~y~p~sg~v~vp~nt~~a~iPge---------~Ep~f~~~tilehl~s~---tGD~~~AveILnraGlsDAvl 500 (593)
T COG2401 433 QKGRGEEKYRPDSGKVEVPKNTVSALIPGE---------YEPEFGEVTILEHLRSK---TGDLNAAVEILNRAGLSDAVL 500 (593)
T ss_pred hhcccccccCCCCCceeccccchhhccCcc---------cccccCchhHHHHHhhc---cCchhHHHHHHHhhccchhhh
Confidence 7899999987433232221111 13333334677765421 122344567788888877654
Q ss_pred cCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 624 SLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 624 ~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
- ... -+.||-|||-|.-||+++...|.+++.||.-|+||+.|..+|...|.++.
T Consensus 501 y-----Rr~--f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisela 554 (593)
T COG2401 501 Y-----RRK--FSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA 554 (593)
T ss_pred h-----hcc--HhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 1 111 14799999999999999999999999999999999999999988887654
No 398
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.67 E-value=5.7e-17 Score=193.16 Aligned_cols=179 Identities=22% Similarity=0.366 Sum_probs=145.7
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC---CcceEEECCEeCCCCChHHhhcceEEEccCCcccc-c
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP---TNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFR-M 590 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p---~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-g 590 (703)
..+|+|+|.-++||+.+-+.||.|||||||+|.|+|-.+- ..|+|.+||.|.++.-. ++.++|.+|++.-|. .
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 5799999999999999999999999999999999998754 24699999999999876 889999999998886 7
Q ss_pred cHHHHhccCCC-----CCCC-HHHHHHHHHHhchHHHHHcCCCCcccccCC---CCCChHHHHHHHHHHHhcCCCCEEEE
Q 005302 591 DISSNISYGCT-----QDIK-QQDIEWAAKQAYAHDFIMSLPSGYETLVDD---DLLSGGQKQRIAIARAILRDPTILIL 661 (703)
Q Consensus 591 TI~eNI~~g~~-----~~~~-~e~i~~aa~~A~l~d~I~~LP~GydT~vGe---~~LSGGQkQRIaLARAL~r~p~ILIL 661 (703)
|++|-+-|... ..+| -++-+..+....--=.|-.|....||.||+ +..|||||.|+.+|-++..+|+++++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 99999866431 0122 122222221222112234677889999998 58999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhCCcEEEEecchhHH
Q 005302 662 DEATSALDAESEHNIKVATLSNGLLVKSLHFLSLY 696 (703)
Q Consensus 662 DEaTSaLD~~tE~~I~~al~~~~~~~~~~~~~~~~ 696 (703)
||+|-+||..|.-+|.++|+++-...++--+.++|
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~ 319 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSIL 319 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEec
Confidence 99999999999999999999998887776655543
No 399
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.65 E-value=7.9e-16 Score=150.68 Aligned_cols=168 Identities=20% Similarity=0.296 Sum_probs=121.1
Q ss_pred CCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeC-CCCCh----
Q 005302 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI-KEVDI---- 571 (703)
Q Consensus 497 ~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di-~~i~~---- 571 (703)
...|++.|+.|+|+.. .|++-|+|+++|+|..+-+||.+|+|||||+|+|.|-...-.|.|.++|.+- ++-++
T Consensus 11 ~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred cceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 3579999999999974 4899999999999999999999999999999999999999999999999864 22221
Q ss_pred ------HHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHH
Q 005302 572 ------KWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (703)
Q Consensus 572 ------~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (703)
.+|++..+.-..-|.--+-|..+ +.||-. ..+.++-++..+. +|-.+-= ..+|-|||
T Consensus 89 dl~YLGgeW~~~~~~agevplq~D~sae~-mifgV~-g~dp~Rre~LI~i-------------LDIdl~WRmHkvSDGqr 153 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEVPLQGDISAEH-MIFGVG-GDDPERREKLIDI-------------LDIDLRWRMHKVSDGQR 153 (291)
T ss_pred ceeEecccccccccccccccccccccHHH-HHhhcc-CCChhHhhhhhhh-------------eeccceEEEeeccccch
Confidence 23444444443222212223332 223322 2222222222211 1222211 38999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 005302 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKVATL 681 (703)
Q Consensus 644 QRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~ 681 (703)
.|+-|+--|+|.=++|+|||-|--||.-......+-++
T Consensus 154 RRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlk 191 (291)
T KOG2355|consen 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLK 191 (291)
T ss_pred hhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888887765
No 400
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.63 E-value=1.1e-15 Score=151.11 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=53.3
Q ss_pred HHcCCCCcccccCCCCCChHHHHHHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 622 IMSLPSGYETLVDDDLLSGGQKQRIAIARAIL----RDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 622 I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~----r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
+..+|+|-.|++ ||||||||++||||+. .+|+++++||||++||+.+.+.+.+.+++.
T Consensus 83 ~~~~~~~~~~~~----LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~ 144 (178)
T cd03239 83 YFLVLQGKVEQI----LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEM 144 (178)
T ss_pred eEEecCCcCccc----CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 667888988888 9999999999999984 799999999999999999999999998765
No 401
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.62 E-value=5.6e-16 Score=157.61 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=96.3
Q ss_pred eeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHh-h-----cceEEEccCCcccccc-
Q 005302 519 QHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL-R-----GRIGFVGQEPKLFRMD- 591 (703)
Q Consensus 519 ~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~l-R-----~~I~~V~Qd~~LF~gT- 591 (703)
+++.++..+| ..+|+||+|||||||+..|.-..-.+.... + +.-..+++ + ..|-...+.. .+.
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~---~---r~~~~~~~i~~g~~~~~v~~~~~~~---~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL---G---RAKKVGEFVKRGCDEGTIEIELYGN---PGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc---c---cccCHHHHhhCCCCcEEEEEEEEeC---CCcc
Confidence 4445554443 558999999999999998766552221110 0 00011111 1 1111111110 011
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHH----hcCCCCEEEEeCCCC
Q 005302 592 ISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD-DLLSGGQKQRIAIARA----ILRDPTILILDEATS 666 (703)
Q Consensus 592 I~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe-~~LSGGQkQRIaLARA----L~r~p~ILILDEaTS 666 (703)
-.+|+++. .+++++.+++.+... |.+.++|.+.+..--. ..||||||||+.+|++ ++.+|+++++||||+
T Consensus 85 ~~~n~~~~----~~q~~~~~~~~~~~~-e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~ 159 (213)
T cd03277 85 QVDNLCQF----LPQDRVGEFAKLSPI-ELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQ 159 (213)
T ss_pred ccCCceEE----EchHHHHHHHhCChH-hHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccc
Confidence 35566654 256788888888766 7777888776543112 5899999999887754 468999999999999
Q ss_pred CCCHHHHHHHHHHHHhC
Q 005302 667 ALDAESEHNIKVATLSN 683 (703)
Q Consensus 667 aLD~~tE~~I~~al~~~ 683 (703)
+||+.+.+.+.+.+.+.
T Consensus 160 ~LD~~~~~~i~~~l~~~ 176 (213)
T cd03277 160 GMDPTNERKVFDMLVET 176 (213)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999988665
No 402
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=2.2e-14 Score=151.09 Aligned_cols=173 Identities=16% Similarity=0.214 Sum_probs=109.4
Q ss_pred ceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----------------------------------------Cc
Q 005302 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----------------------------------------TN 556 (703)
Q Consensus 518 L~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-----------------------------------------~s 556 (703)
+++.++++.+| ..+|+|||||||||++..|.-+... ..
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~ 90 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG 90 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence 34556777776 6889999999999998875433211 11
Q ss_pred ceEEECCEeCCC-CChHHhhcceEEEccCCccccccHHHHhccCCCC--CCCHHHHHHHHHHhchHHHHHc---CCCCcc
Q 005302 557 GQILIDGFPIKE-VDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQ--DIKQQDIEWAAKQAYAHDFIMS---LPSGYE 630 (703)
Q Consensus 557 G~I~idG~di~~-i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~--~~~~e~i~~aa~~A~l~d~I~~---LP~Gyd 630 (703)
..+.+||..++. -+...+-..|.+.+++..|+.++-.+-..|.|.- ....+-.....+.-.+....++ -|+..+
T Consensus 91 ~~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~d~ 170 (270)
T cd03242 91 RKARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQRNALLKGPHRDD 170 (270)
T ss_pred eEEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCChhh
Confidence 145677877765 2233345567778888888877655555554320 1111111111111111222222 244433
Q ss_pred ccc--CC----CCCChHHHHHHHHHHHh---------cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcEEEEec
Q 005302 631 TLV--DD----DLLSGGQKQRIAIARAI---------LRDPTILILDEATSALDAESEHNIKVATLSNGLLVKSLH 691 (703)
Q Consensus 631 T~v--Ge----~~LSGGQkQRIaLARAL---------~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~~~~~~ 691 (703)
..+ .+ +-+|+||+|+++|||+| +++|++++|||||++||+...+.+.+.+.+.+..+=.-|
T Consensus 171 l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~ 246 (270)
T cd03242 171 LLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTT 246 (270)
T ss_pred eEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeC
Confidence 332 33 25899999999999997 489999999999999999999999999987765444444
No 403
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.56 E-value=6.6e-15 Score=148.19 Aligned_cols=122 Identities=18% Similarity=0.215 Sum_probs=83.9
Q ss_pred ceeeeEEecCCc-EEEEEcCCCCcHHHHHHHHh--------cCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccc
Q 005302 518 LQHVNISVNPGE-VVAIAGLSGSGKSTLVNLLL--------RLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLF 588 (703)
Q Consensus 518 L~~isl~I~~Ge-~vAIVG~SGsGKSTLlkLLl--------gly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF 588 (703)
+.++||++++|+ .++|+||+|||||||+|.+. |++-|..+.+ .++++.|.-.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~-- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFA-- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEE--
Confidence 457899999996 69999999999999999998 6665542111 1344444311
Q ss_pred cccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCC
Q 005302 589 RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSAL 668 (703)
Q Consensus 589 ~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaL 668 (703)
.++ . ++ .+. + +-+.+|+|+|||..|++++ .+|+++++||||+++
T Consensus 78 --------~lg-~----~~-------------~l~---~------~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~gl 121 (200)
T cd03280 78 --------DIG-D----EQ-------------SIE---Q------SLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGT 121 (200)
T ss_pred --------ecC-c----hh-------------hhh---c------CcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCC
Confidence 111 0 00 000 0 1157999999999999995 899999999999999
Q ss_pred CHHHHHHHHH-HHHhC----CcEEEEecchh
Q 005302 669 DAESEHNIKV-ATLSN----GLLVKSLHFLS 694 (703)
Q Consensus 669 D~~tE~~I~~-al~~~----~~~~~~~~~~~ 694 (703)
|+++...+.. .++.+ ...+-+-|...
T Consensus 122 D~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~ 152 (200)
T cd03280 122 DPVEGAALAIAILEELLERGALVIATTHYGE 152 (200)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECCHHH
Confidence 9998877743 34332 34555667543
No 404
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=8.9e-15 Score=154.60 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=48.2
Q ss_pred CCChHHHHHHHHHHHhcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc---EEEEecchh
Q 005302 637 LLSGGQKQRIAIARAILR----DPTILILDEATSALDAESEHNIKVATLSNGL---LVKSLHFLS 694 (703)
Q Consensus 637 ~LSGGQkQRIaLARAL~r----~p~ILILDEaTSaLD~~tE~~I~~al~~~~~---~~~~~~~~~ 694 (703)
.|||||+||+++||+++. +|++++|||||++||+++.+.+.+.+++... .+-.-|-..
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~ 234 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQ 234 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHH
Confidence 599999999999997643 9999999999999999999999999987643 344445444
No 405
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.54 E-value=1.6e-14 Score=141.85 Aligned_cols=177 Identities=21% Similarity=0.307 Sum_probs=134.1
Q ss_pred EEEEEEEEcCCC-CCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC----CCcceEEECCEeCCCCChHHhh
Q 005302 501 DFVDVSFRYSSR-EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE----PTNGQILIDGFPIKEVDIKWLR 575 (703)
Q Consensus 501 ~~~nVsF~Y~~~-~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~----p~sG~I~idG~di~~i~~~~lR 575 (703)
.++|++..+... ....+.+++|++...||.-++||+||||||-++|.++|..+ .+.....+|++|+-++++..-|
T Consensus 5 DIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RR 84 (330)
T COG4170 5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred cccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhh
Confidence 345555544321 13568999999999999999999999999999999999864 4667888999999999988877
Q ss_pred cc----eEEEccCCcc-cccc------HHHHhccCCCC-------CCCHHHHHHHHHHhchHH--HHHcCCCCcccccCC
Q 005302 576 GR----IGFVGQEPKL-FRMD------ISSNISYGCTQ-------DIKQQDIEWAAKQAYAHD--FIMSLPSGYETLVDD 635 (703)
Q Consensus 576 ~~----I~~V~Qd~~L-F~gT------I~eNI~~g~~~-------~~~~e~i~~aa~~A~l~d--~I~~LP~GydT~vGe 635 (703)
+- |++++|||.- .+-| +-+||-.+.-+ .-...+-.+.+.++|+.| +|++ .|-
T Consensus 85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~---SYP----- 156 (330)
T COG4170 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR---SYP----- 156 (330)
T ss_pred hhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH---hCc-----
Confidence 65 5689999973 2222 45677433110 123455667778888865 4442 121
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 636 DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 636 ~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
..|--|+-|++.||-|+..+|++||-||||.++|+.|..+|...+.+++.
T Consensus 157 ~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQ 206 (330)
T COG4170 157 YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQ 206 (330)
T ss_pred chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhc
Confidence 24667888999999999999999999999999999999999998877654
No 406
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.52 E-value=1.8e-14 Score=155.39 Aligned_cols=161 Identities=30% Similarity=0.403 Sum_probs=105.5
Q ss_pred EEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhh--------
Q 005302 504 DVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLR-------- 575 (703)
Q Consensus 504 nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR-------- 575 (703)
++.-+|+.+ ...|..+= ..++|+.++|+|++|-||||-+|+|+|...|+=|+- |+-|=-+-=.+.+|
T Consensus 79 e~vHRYg~N--gFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF 153 (591)
T COG1245 79 EVVHRYGVN--GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYF 153 (591)
T ss_pred cceeeccCC--ceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHH
Confidence 577889754 23444332 357899999999999999999999999999998864 33111000011111
Q ss_pred -----------cceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHH
Q 005302 576 -----------GRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQ 642 (703)
Q Consensus 576 -----------~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQ 642 (703)
.++-||.-=|..+.|++.|=+.--++ . . ..+|.|+.| +++-.++. +.||||+
T Consensus 154 ~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de-~---g---------~~devve~l--~L~nvl~r~v~~LSGGE 218 (591)
T COG1245 154 KKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDE-R---G---------KFDEVVERL--GLENVLDRDVSELSGGE 218 (591)
T ss_pred HHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhh-c---C---------cHHHHHHHh--cchhhhhhhhhhcCchH
Confidence 12223444455566666665543322 1 1 223333332 23333333 5899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 643 kQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
-||+|||-|+.|++++.++|||||-||....-..-+.|+.+.
T Consensus 219 LQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~ 260 (591)
T COG1245 219 LQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELA 260 (591)
T ss_pred HHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999977666666666554
No 407
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.49 E-value=1.9e-14 Score=144.95 Aligned_cols=131 Identities=18% Similarity=0.225 Sum_probs=85.7
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccc-cccHH
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLF-RMDIS 593 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF-~gTI~ 593 (703)
.+|++|++++ +|+.++|+||||||||||+|.+.|... +..+|.++..- +++.|...+| ..|+.
T Consensus 14 ~~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccch
Confidence 4688888765 479999999999999999999987442 23467666431 2566765554 56899
Q ss_pred HHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHH
Q 005302 594 SNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESE 673 (703)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE 673 (703)
||+.++.. . ..+++.+ +++.++.+. .++|+++++||||+++|+.+.
T Consensus 78 d~l~~~~s-~-~~~e~~~------~~~iL~~~~--------------------------~~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 78 DDLRDGIS-Y-FYAELRR------LKEIVEKAK--------------------------KGEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred hccccccC-h-HHHHHHH------HHHHHHhcc--------------------------CCCCeEEEEecccCCCCHHHH
Confidence 99998742 2 2222221 222233221 089999999999999999877
Q ss_pred HHHHH-HHHhC----CcEEEEecchhH
Q 005302 674 HNIKV-ATLSN----GLLVKSLHFLSL 695 (703)
Q Consensus 674 ~~I~~-al~~~----~~~~~~~~~~~~ 695 (703)
..+.. .++.+ ...+=.-|...+
T Consensus 124 ~~l~~~ll~~l~~~~~tiiivTH~~~~ 150 (199)
T cd03283 124 QAASAAVLKFLKNKNTIGIISTHDLEL 150 (199)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCcHHH
Confidence 65533 23322 233455566544
No 408
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.48 E-value=2.1e-13 Score=132.70 Aligned_cols=120 Identities=24% Similarity=0.307 Sum_probs=84.4
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE-EEccCCccccccHHHHhccCC
Q 005302 522 NISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG-FVGQEPKLFRMDISSNISYGC 600 (703)
Q Consensus 522 sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~-~V~Qd~~LF~gTI~eNI~~g~ 600 (703)
++.+.+|..+.|+||+||||||+++.+....-.++|.+.... +. +.| .+++...-| .
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~--------i--- 72 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL--------I--- 72 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE--------e---
Confidence 445556679999999999999999998777666666665410 00 111 122221111 0
Q ss_pred CCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcC----CCCEEEEeCCCCCCCHHHHHHH
Q 005302 601 TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR----DPTILILDEATSALDAESEHNI 676 (703)
Q Consensus 601 ~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r----~p~ILILDEaTSaLD~~tE~~I 676 (703)
-+ ..+|||||+||+++||+|.+ +|+++++|||++++|++....+
T Consensus 73 -----------------------------~~---~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l 120 (162)
T cd03227 73 -----------------------------FT---RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQAL 120 (162)
T ss_pred -----------------------------hh---eeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 00 01299999999999999986 7899999999999999999999
Q ss_pred HHHHHhCC----cEEEEecchhH
Q 005302 677 KVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 677 ~~al~~~~----~~~~~~~~~~~ 695 (703)
.+.+.+.. ..+-+-|+..+
T Consensus 121 ~~~l~~~~~~~~~vii~TH~~~~ 143 (162)
T cd03227 121 AEAILEHLVKGAQVIVITHLPEL 143 (162)
T ss_pred HHHHHHHHhcCCEEEEEcCCHHH
Confidence 88887642 34556676654
No 409
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.45 E-value=2e-13 Score=171.76 Aligned_cols=109 Identities=24% Similarity=0.238 Sum_probs=95.2
Q ss_pred cccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC-CCCChHHHH------HHHHHHHhcCCCCEE
Q 005302 587 LFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD-DLLSGGQKQ------RIAIARAILRDPTIL 659 (703)
Q Consensus 587 LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe-~~LSGGQkQ------RIaLARAL~r~p~IL 659 (703)
.|+||++|||.+ ++ +++++ ..|++.+++++|+..||.| ||.++. ..||||||| |++||||++.+|++|
T Consensus 1153 ~~~~~~~~~i~~-~~-~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RS-DADEN--VSASDKRRNYNYRVVMLKG-DTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred HcCccHHHHhhc-CC-CCChH--HHHHHHcCchHHHhccCCC-CeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence 599999999999 66 77776 6899999999999999999 999987 699999999 999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhC---------CcEEEEecchhHHHHhh
Q 005302 660 ILDEATSALDAESEHNIKVATLSN---------GLLVKSLHFLSLYVLIC 700 (703)
Q Consensus 660 ILDEaTSaLD~~tE~~I~~al~~~---------~~~~~~~~~~~~~~~~~ 700 (703)
+|||||++||+.+...+.+.|.++ ..++=.-|-....--+|
T Consensus 1228 ~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~ 1277 (1311)
T TIGR00606 1228 ALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLG 1277 (1311)
T ss_pred EeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHh
Confidence 999999999999999988887654 23556667776665555
No 410
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.45 E-value=7.1e-14 Score=141.85 Aligned_cols=145 Identities=22% Similarity=0.314 Sum_probs=89.9
Q ss_pred EEEEEcCCCCcHHHHH-HHHhcCCCC-----------------CcceEEECCEeCCCCC-hHHhhcceEEEccCC---cc
Q 005302 530 VVAIAGLSGSGKSTLV-NLLLRLYEP-----------------TNGQILIDGFPIKEVD-IKWLRGRIGFVGQEP---KL 587 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLl-kLLlgly~p-----------------~sG~I~idG~di~~i~-~~~lR~~I~~V~Qd~---~L 587 (703)
+++|+|++|||||||+ +++.|.+++ +.|.+.+++.|...-. ...+| .+++.|.+ ..
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~--~~~~~~~~~~i~v 88 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR--DGYYIKGQCAIIM 88 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh--HHHhccCCEEEEE
Confidence 6999999999999999 699998865 5688999888875321 11111 11222221 12
Q ss_pred cccc-----------------HHHHhc---cCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC-CCCChH--HHH
Q 005302 588 FRMD-----------------ISSNIS---YGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD-DLLSGG--QKQ 644 (703)
Q Consensus 588 F~gT-----------------I~eNI~---~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe-~~LSGG--QkQ 644 (703)
|+.| ..+|+. .++..+..+.++. .+.. ++.......| -+ +..||+ |+|
T Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~--~~~~---~~~~~~~~~~----~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 89 FDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVK--ARQI---TFHRKKNLQY----YDISAKSNYNFEKP 159 (215)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCC--HHHH---HHHHHcCCEE----EEEeCCCCCCHHHH
Confidence 3333 123432 2321111111110 1111 1222211111 12 344555 999
Q ss_pred HHHHHHHhcCCCCEEEEeCCC-----CCCCHHHHHHHHHHHHhCCc
Q 005302 645 RIAIARAILRDPTILILDEAT-----SALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 645 RIaLARAL~r~p~ILILDEaT-----SaLD~~tE~~I~~al~~~~~ 685 (703)
++.|||+++.+|+++++|||| ++||+.+.+.|.+.++++..
T Consensus 160 f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 160 FLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999 99999999999999998754
No 411
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.45 E-value=1e-13 Score=143.85 Aligned_cols=152 Identities=20% Similarity=0.241 Sum_probs=100.5
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEE--ECCEeCCCCChHHhhcce--EEEccCCccccccH
Q 005302 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQIL--IDGFPIKEVDIKWLRGRI--GFVGQEPKLFRMDI 592 (703)
Q Consensus 517 vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~--idG~di~~i~~~~lR~~I--~~V~Qd~~LF~gTI 592 (703)
+++.+ +.|.+||+++|+||+|+|||||++.+.+......+++. +-...-+..+..++.+.+ .+|..+ ++.+-
T Consensus 6 ~id~~-~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~---~~~~~ 81 (249)
T cd01128 6 VVDLF-APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIAST---FDEPP 81 (249)
T ss_pred heeee-cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEec---CCCCH
Confidence 44433 57999999999999999999999999999987644333 222222235566665555 111110 00011
Q ss_pred HHHhccCCCCCCCHHHHHHHHH---Hhc-----hHHHHHcCCCCcccccCC--CCCChHH--------HHHHHHHHHhcC
Q 005302 593 SSNISYGCTQDIKQQDIEWAAK---QAY-----AHDFIMSLPSGYETLVDD--DLLSGGQ--------KQRIAIARAILR 654 (703)
Q Consensus 593 ~eNI~~g~~~~~~~e~i~~aa~---~A~-----l~d~I~~LP~GydT~vGe--~~LSGGQ--------kQRIaLARAL~r 654 (703)
...+... ..+.+.|+ ..| +-|.+.++|++|++.+|+ ..+|||| +||+++||++.+
T Consensus 82 ~~~~~~~-------~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~ 154 (249)
T cd01128 82 ERHVQVA-------EMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEE 154 (249)
T ss_pred HHHHHHH-------HHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCC
Confidence 1111110 01111121 111 336789999999999987 4899999 999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHH--HHHHHH
Q 005302 655 DPTILILDEATSALDAESEHN--IKVATL 681 (703)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~--I~~al~ 681 (703)
+++|.+| ||+.+|+.+|.. +.++++
T Consensus 155 ~gsIt~l--~T~~~d~~~~~~~~i~~~~~ 181 (249)
T cd01128 155 GGSLTII--ATALVDTGSRMDDVIFEEFK 181 (249)
T ss_pred CCceEEe--eeheecCCCcccchHHHHHh
Confidence 9999999 999999877754 445554
No 412
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.42 E-value=4.6e-13 Score=137.10 Aligned_cols=131 Identities=21% Similarity=0.166 Sum_probs=92.8
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE-EEccCCccccccHH
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG-FVGQEPKLFRMDIS 593 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~-~V~Qd~~LF~gTI~ 593 (703)
..|.+|+++++++|+.++|+|||||||||+++.+.- -.+..++| +||.+...+. +.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~~ 73 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--IV 73 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--cc
Confidence 578999999999999999999999999999999981 24455566 6666542211 11
Q ss_pred HHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh--cCCCCEEEEeCC---CCCC
Q 005302 594 SNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI--LRDPTILILDEA---TSAL 668 (703)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL--~r~p~ILILDEa---TSaL 668 (703)
|.| ....++.|. . ..++|+|++|+..+|+++ ..+|+++||||| |+.+
T Consensus 74 ~~i----------------l~~~~l~d~----------~--~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~l 125 (222)
T cd03285 74 DCI----------------LARVGASDS----------Q--LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTY 125 (222)
T ss_pred cee----------------Eeeeccccc----------h--hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChH
Confidence 111 111111111 1 357999999999999999 999999999999 9999
Q ss_pred CHHHHHHHH-HHHHh--CCcEEEEecchhHH
Q 005302 669 DAESEHNIK-VATLS--NGLLVKSLHFLSLY 696 (703)
Q Consensus 669 D~~tE~~I~-~al~~--~~~~~~~~~~~~~~ 696 (703)
|........ +.+.+ -.-.+=+-|+..+.
T Consensus 126 D~~~~~~~il~~l~~~~~~~vlisTH~~el~ 156 (222)
T cd03285 126 DGFGLAWAIAEYIATQIKCFCLFATHFHELT 156 (222)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEechHHHH
Confidence 998765443 55543 24555677875443
No 413
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.33 E-value=5.9e-12 Score=157.82 Aligned_cols=156 Identities=25% Similarity=0.293 Sum_probs=108.3
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh------cC---CCCCcceEEECCEeCCCCC----------hHHhhcc
Q 005302 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL------RL---YEPTNGQILIDGFPIKEVD----------IKWLRGR 577 (703)
Q Consensus 517 vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLl------gl---y~p~sG~I~idG~di~~i~----------~~~lR~~ 577 (703)
=|+|++.+||-|..++|+|.||||||||++=.+ .+ .+.-+--|.||=.||..-. .+.+|+.
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 389999999999999999999999999997443 11 1333455888888875433 2344554
Q ss_pred eEEEcc-------------------------------C-----C----------------------------ccccccHH
Q 005302 578 IGFVGQ-------------------------------E-----P----------------------------KLFRMDIS 593 (703)
Q Consensus 578 I~~V~Q-------------------------------d-----~----------------------------~LF~gTI~ 593 (703)
.|-.++ | + -+++.||.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 432110 0 0 02455555
Q ss_pred HHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCC---CCEEEEeCCCCCC
Q 005302 594 SNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD---PTILILDEATSAL 668 (703)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~---p~ILILDEaTSaL 668 (703)
|-+.||.. ..++. ..-+.+.++-.||=++ |. ..|||||.|||-||..|.++ +.++||||||.+|
T Consensus 1665 ea~~~F~~----~~~i~------~~L~~L~~vGLgYl~L-Gq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GL 1733 (1809)
T PRK00635 1665 EVAETFPF----LKKIQ------KPLQALIDNGLGYLPL-GQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSL 1733 (1809)
T ss_pred HHHHHhhc----cHHHH------HHHHHHHHcCCCeeeC-CCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCC
Confidence 55555521 11122 2223345556688775 76 58999999999999999976 7899999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 005302 669 DAESEHNIKVATLSN 683 (703)
Q Consensus 669 D~~tE~~I~~al~~~ 683 (703)
++..-+++.+.++++
T Consensus 1734 h~~d~~~Ll~~l~~L 1748 (1809)
T PRK00635 1734 DNQQKSALLVQLRTL 1748 (1809)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999998887665
No 414
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.31 E-value=4.5e-12 Score=127.78 Aligned_cols=128 Identities=16% Similarity=0.154 Sum_probs=76.4
Q ss_pred eeEEecCCcEEEEEcCCCCcHHHHHHHHhc-CCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccC
Q 005302 521 VNISVNPGEVVAIAGLSGSGKSTLVNLLLR-LYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYG 599 (703)
Q Consensus 521 isl~I~~Ge~vAIVG~SGsGKSTLlkLLlg-ly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g 599 (703)
.++++.+|++++|+|||||||||+++.+.+ .+.++.|...- ..+..+++..|.-..|. ..|++.
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~~~~--~~d~i~-- 86 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFTRIG--AEDSIS-- 86 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEEEec--Cccccc--
Confidence 355667999999999999999999999994 33333332110 01223343333211110 000000
Q ss_pred CCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q 005302 600 CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVA 679 (703)
Q Consensus 600 ~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~a 679 (703)
+ +-+.+|++++| +..+-++..+|+++||||||+++|+.....+...
T Consensus 87 ---------------------------~------~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ 132 (202)
T cd03243 87 ---------------------------D------GRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYA 132 (202)
T ss_pred ---------------------------C------CceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHH
Confidence 0 11356666665 6666788899999999999999999876655433
Q ss_pred ----HHh-CCcEEEEecchhHHH
Q 005302 680 ----TLS-NGLLVKSLHFLSLYV 697 (703)
Q Consensus 680 ----l~~-~~~~~~~~~~~~~~~ 697 (703)
+.+ -...+=.-|...+.-
T Consensus 133 ll~~l~~~~~~vi~~tH~~~~~~ 155 (202)
T cd03243 133 VLEHLLEKGCRTLFATHFHELAD 155 (202)
T ss_pred HHHHHHhcCCeEEEECChHHHHH
Confidence 222 233555667654433
No 415
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.30 E-value=7.8e-12 Score=143.24 Aligned_cols=56 Identities=29% Similarity=0.448 Sum_probs=47.8
Q ss_pred CcccccCC--CCCChHHHHHHHHHHHhcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 628 GYETLVDD--DLLSGGQKQRIAIARAILRDP---TILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 628 GydT~vGe--~~LSGGQkQRIaLARAL~r~p---~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
||=+ +|. ..||||+.|||=||.-|.|+. -+.||||||-+|-.+.-+++.+.|.++-
T Consensus 812 gYi~-LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLv 872 (935)
T COG0178 812 GYIK-LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLV 872 (935)
T ss_pred ceEe-cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4444 366 599999999999999999998 9999999999999998888887776543
No 416
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.30 E-value=8.6e-12 Score=126.07 Aligned_cols=137 Identities=14% Similarity=0.157 Sum_probs=88.5
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEE-EccCCccccccHH
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF-VGQEPKLFRMDIS 593 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~-V~Qd~~LF~gTI~ 593 (703)
.++.+|+++++++|+.++|+|||||||||++|.+.++. +..++|+ ||-+. ..-++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 57999999999999999999999999999999998883 2223321 11111 111333
Q ss_pred HHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHH
Q 005302 594 SNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESE 673 (703)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE 673 (703)
|||.. .++.+-+..-+.+++|+|++|+. .+-++..+|++++||||++++|+..-
T Consensus 73 d~I~~-------------------------~~~~~d~~~~~~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~gt~~~~~ 126 (204)
T cd03282 73 NRLLS-------------------------RLSNDDSMERNLSTFASEMSETA-YILDYADGDSLVLIDELGRGTSSADG 126 (204)
T ss_pred hheeE-------------------------ecCCccccchhhhHHHHHHHHHH-HHHHhcCCCcEEEeccccCCCCHHHH
Confidence 33321 11111111112368999999764 55557889999999999999999653
Q ss_pred HH----HHHHHH-hCCcEEEEecchhHHHHhh
Q 005302 674 HN----IKVATL-SNGLLVKSLHFLSLYVLIC 700 (703)
Q Consensus 674 ~~----I~~al~-~~~~~~~~~~~~~~~~~~~ 700 (703)
.. +.+.+. .....+=+-|+..+--..+
T Consensus 127 ~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 127 FAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 32 333333 3345666778776655443
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.28 E-value=1.7e-11 Score=128.78 Aligned_cols=119 Identities=20% Similarity=0.223 Sum_probs=88.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC-hHHhhcceEEEccCCccccccHHHHhccCCCCCCCHH
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD-IKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQ 607 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~-~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e 607 (703)
+.++|+||+|||||||++.|+|++.|++|+|.+||+++..++ ..++...+++++|+..--..++.||
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~------------ 179 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDG------------ 179 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccccccc------------
Confidence 789999999999999999999999999999999999998775 5678888999999763222233333
Q ss_pred HHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcEE
Q 005302 608 DIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGLLV 687 (703)
Q Consensus 608 ~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~~ 687 (703)
|.+..++ ..++||+ +|+++++|||++ .+.-..+.+.+.+-..++
T Consensus 180 ----~~k~~~~---------------------------~~~i~~~--~P~villDE~~~---~e~~~~l~~~~~~G~~vI 223 (270)
T TIGR02858 180 ----CPKAEGM---------------------------MMLIRSM--SPDVIVVDEIGR---EEDVEALLEALHAGVSII 223 (270)
T ss_pred ----chHHHHH---------------------------HHHHHhC--CCCEEEEeCCCc---HHHHHHHHHHHhCCCEEE
Confidence 1111111 4566664 999999999985 344455666666656688
Q ss_pred EEecchhH
Q 005302 688 KSLHFLSL 695 (703)
Q Consensus 688 ~~~~~~~~ 695 (703)
-+.|-.++
T Consensus 224 ~ttH~~~~ 231 (270)
T TIGR02858 224 ATAHGRDV 231 (270)
T ss_pred EEechhHH
Confidence 88895443
No 418
>PRK00064 recF recombination protein F; Reviewed
Probab=99.28 E-value=1.9e-11 Score=134.11 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=43.8
Q ss_pred CCChHHHHHHHHHHHhc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 637 LLSGGQKQRIAIARAIL---------RDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 637 ~LSGGQkQRIaLARAL~---------r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
.+|+||+|+++||++|. ++|+||+||||+|+||++..+.+.+.+.+.
T Consensus 273 ~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~ 328 (361)
T PRK00064 273 FGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL 328 (361)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc
Confidence 69999999999999885 899999999999999999999999998764
No 419
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.24 E-value=3.8e-11 Score=128.87 Aligned_cols=153 Identities=22% Similarity=0.359 Sum_probs=108.6
Q ss_pred EEEcCCCCCcccceeeeEEecCCc-----EEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEE
Q 005302 506 SFRYSSREMVPVLQHVNISVNPGE-----VVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF 580 (703)
Q Consensus 506 sF~Y~~~~~~~vL~~isl~I~~Ge-----~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~ 580 (703)
.|+||+ ...-..+..|.|+.|| .+...|++|.||||+++.|+|..+|++|. ++..++ ++|
T Consensus 342 ~y~Yp~--m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~ln-------VSy 406 (592)
T KOG0063|consen 342 RYSYPK--MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVLN-------VSY 406 (592)
T ss_pred eeccCc--ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------cccccc-------eec
Confidence 378886 3678899999999996 57889999999999999999999998762 333443 555
Q ss_pred EccCCc-cccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCC
Q 005302 581 VGQEPK-LFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPT 657 (703)
Q Consensus 581 V~Qd~~-LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ 657 (703)
=||... =|.||+|.=+ .++++.+..--+.-.++++ |...+-.++. .+||||+.||+|||-+|=+.++
T Consensus 407 kpqkispK~~~tvR~ll---------~~kIr~ay~~pqF~~dvmk-pL~ie~i~dqevq~lSggelQRval~KOGGKpAd 476 (592)
T KOG0063|consen 407 KPQKISPKREGTVRQLL---------HTKIRDAYMHPQFVNDVMK-PLQIENIIDQEVQGLSGGELQRVALALCLGKPAD 476 (592)
T ss_pred cccccCccccchHHHHH---------HHHhHhhhcCHHHHHhhhh-hhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCc
Confidence 556433 4777877633 1333333333233233332 3334444444 5899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 658 ILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
+.+.|||.+-||.+.....-.-+++.
T Consensus 477 vYliDEpsAylDSeQRi~AskvikRf 502 (592)
T KOG0063|consen 477 VYLIDEPSAYLDSEQRIIASKVIKRF 502 (592)
T ss_pred eEEecCchhhcChHHHHHHHHHHHHH
Confidence 99999999999987665544445543
No 420
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.21 E-value=1.2e-12 Score=153.30 Aligned_cols=164 Identities=15% Similarity=0.165 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHhCchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 356 TASANEVAQETFSLMRTVRVYGTEKQEVKRY-----KHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFI 430 (703)
Q Consensus 356 ~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~-----~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~iiil~~g~~lv 430 (703)
.+..++.+.|++.++.+||..+.|+....+| .....+..+...+..........+...+.....++++++|++++
T Consensus 39 ~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v 118 (644)
T PRK10733 39 QEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWIF 118 (644)
T ss_pred HHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999999988443333 33333333333333333333334444555566788889999999
Q ss_pred HhCCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccccCCCCcEEEEEEEE
Q 005302 431 MRGNITAE---QLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKLQRLMGRIDFVDVSF 507 (703)
Q Consensus 431 ~~G~itvG---~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~~~~~~~~~g~I~~~nVsF 507 (703)
+.|.+|.| ++++|..+...+..+ ..+...+.++.....+.+|+.++++...+.. .
T Consensus 119 ~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~-----~---------------- 176 (644)
T PRK10733 119 FMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREPS-----R---------------- 176 (644)
T ss_pred HHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHH-----H----------------
Confidence 99999999 888998888888776 5666777777777778888888876533211 0
Q ss_pred EcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005302 508 RYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (703)
Q Consensus 508 ~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~ 553 (703)
.+++..++++| +.|+||+||||||+++.+++...
T Consensus 177 ----------~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 177 ----------FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred ----------HHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 01112256667 99999999999999999988653
No 421
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=99.17 E-value=2.1e-10 Score=125.06 Aligned_cols=81 Identities=15% Similarity=0.240 Sum_probs=67.3
Q ss_pred HHHHHHHHHhhhcCCCCccccccccccCCCCcEEEEEEEEEcCCCCCcccce-----------eeeEEecCCcEEEEEcC
Q 005302 468 VGASEKVFQLMDLMPSDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQ-----------HVNISVNPGEVVAIAGL 536 (703)
Q Consensus 468 ~~~~~Ri~dil~~~~e~~~~~~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~-----------~isl~I~~Ge~vAIVG~ 536 (703)
..+.+|++++++.++... ..+....+.++|+||+|.||+. .++|+ |+++.|.+||.++||||
T Consensus 104 ~~~~ER~~~Ll~v~~vn~-----~~~e~~~~ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~ 176 (415)
T TIGR00767 104 PKEGERYFALLKVESVNG-----DDPEKAKNRVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAP 176 (415)
T ss_pred cccHhHHHHHhCCCccCC-----CCccccCCCeEEEEeeecCCCc--cceeecCccccceeeeeeEEEeCCCCEEEEECC
Confidence 347899999999877532 1122345789999999999963 57897 99999999999999999
Q ss_pred CCCcHHHHHHHHhcCCCCC
Q 005302 537 SGSGKSTLVNLLLRLYEPT 555 (703)
Q Consensus 537 SGsGKSTLlkLLlgly~p~ 555 (703)
+|||||||++.+.+.+...
T Consensus 177 ~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 177 PKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCChhHHHHHHHHhhccc
Confidence 9999999999999998654
No 422
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.14 E-value=2.2e-11 Score=134.73 Aligned_cols=68 Identities=15% Similarity=0.141 Sum_probs=57.2
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-eEEECCEeCCCCChHHhhcceEEEccCC
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG-QILIDGFPIKEVDIKWLRGRIGFVGQEP 585 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG-~I~idG~di~~i~~~~lR~~I~~V~Qd~ 585 (703)
.++|++||++|++||.++|+||||||||||++ .|+.+|++| +|.+||.++...+...++..= +|.|+-
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 36899999999999999999999999999999 788888888 799999999876644432211 888874
No 423
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.10 E-value=3e-10 Score=115.89 Aligned_cols=126 Identities=22% Similarity=0.251 Sum_probs=80.2
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHH
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (703)
..|.+|+++++++ +.++|+|||||||||++|.+.+..-. |+ .|.++ ...+..++++.|- .-.-++.|
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~v-----p~~~~~i~~~~~i--~~~~~~~~ 84 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFV-----PASKAEIGVVDRI--FTRIGASD 84 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCee-----ccccceecceeeE--eccCCchh
Confidence 4689999999988 99999999999999999999874321 11 11111 1112345555431 11122333
Q ss_pred HhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHH----HHHHHhc--CCCCEEEEeCC---C
Q 005302 595 NISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI----AIARAIL--RDPTILILDEA---T 665 (703)
Q Consensus 595 NI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRI----aLARAL~--r~p~ILILDEa---T 665 (703)
++|+||.++. .+++++- .+|++++|||| |
T Consensus 85 ------------------------------------------~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 85 ------------------------------------------DLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred ------------------------------------------hhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 4445544432 3555554 69999999999 9
Q ss_pred CCCCHHH-HHHHHHHHHhC--CcEEEEecchhH
Q 005302 666 SALDAES-EHNIKVATLSN--GLLVKSLHFLSL 695 (703)
Q Consensus 666 SaLD~~t-E~~I~~al~~~--~~~~~~~~~~~~ 695 (703)
+++|... ...+.+.+.+. ...+-+-|+..+
T Consensus 123 ~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l 155 (216)
T cd03284 123 STYDGLSIAWAIVEYLHEKIGAKTLFATHYHEL 155 (216)
T ss_pred ChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHH
Confidence 9999865 35566666543 345667787543
No 424
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.10 E-value=1e-10 Score=119.07 Aligned_cols=48 Identities=31% Similarity=0.436 Sum_probs=40.0
Q ss_pred CCChHHHHHHHHH----HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 637 LLSGGQKQRIAIA----RAILRDPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 637 ~LSGGQkQRIaLA----RAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
.||||||-+++|| .+-++++|++||||+.++||..+.+++.+.|+++.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~ 187 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELS 187 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999987 44578999999999999999999999999998876
No 425
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=2.9e-10 Score=122.11 Aligned_cols=157 Identities=22% Similarity=0.325 Sum_probs=99.3
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhc--CCCCCcceEEECCEeCCCCChHHhhc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLR--LYEPTNGQILIDGFPIKEVDIKWLRG 576 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlg--ly~p~sG~I~idG~di~~i~~~~lR~ 576 (703)
.|.++|-+.+-.+ ...+.|-||.|-.|..+++|||+|-|||||+|-|.- |--|..=.|++
T Consensus 264 DIKiEnF~ISA~G---k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLl--------------- 325 (807)
T KOG0066|consen 264 DIKIENFDISAQG---KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLL--------------- 325 (807)
T ss_pred cceeeeeeeeccc---ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEe---------------
Confidence 4777777666543 468999999999999999999999999999998863 22333333333
Q ss_pred ceEEEccCCccccccHHHHh---------------------ccCCCCCCCHHHHHHHHH---Hhc-------hHHHHHcC
Q 005302 577 RIGFVGQEPKLFRMDISSNI---------------------SYGCTQDIKQQDIEWAAK---QAY-------AHDFIMSL 625 (703)
Q Consensus 577 ~I~~V~Qd~~LF~gTI~eNI---------------------~~g~~~~~~~e~i~~aa~---~A~-------l~d~I~~L 625 (703)
..|+.+-=+.|--+-+ --|+. .-.|++.+++. ..| +...+..
T Consensus 326 ----CEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~--taaErl~~v~~ELraiGA~sAEarARRILAG- 398 (807)
T KOG0066|consen 326 ----CEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDT--TAAERLKEVADELRAIGADSAEARARRILAG- 398 (807)
T ss_pred ----eeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCch--HHHHHHHHHHHHHHHhccccchhHHHHHHhh-
Confidence 3333322222222211 22211 11233332221 111 1122222
Q ss_pred CCCcccccCC---CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 005302 626 PSGYETLVDD---DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATL 681 (703)
Q Consensus 626 P~GydT~vGe---~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~ 681 (703)
-|++-..-+ ..+|||=|-|++|||||+-+|-+|.|||||.|||-..---+.+.|+
T Consensus 399 -LGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQ 456 (807)
T KOG0066|consen 399 -LGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQ 456 (807)
T ss_pred -cCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHh
Confidence 245554444 4899999999999999999999999999999999876555555444
No 426
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.06 E-value=1.6e-09 Score=129.11 Aligned_cols=147 Identities=18% Similarity=0.221 Sum_probs=93.2
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCC-cEEEEEcCCCCcHHHHHHHHhcC-CCCCcceEEECCEeCCCCChHHhh
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPG-EVVAIAGLSGSGKSTLVNLLLRL-YEPTNGQILIDGFPIKEVDIKWLR 575 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~G-e~vAIVG~SGsGKSTLlkLLlgl-y~p~sG~I~idG~di~~i~~~~lR 575 (703)
+.|.++|+..-+-... .+| .+|+++.+| +.++|+||||+||||++|.+.|. +.++.|-
T Consensus 294 ~~i~l~~~rhPll~~~-~~v--p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~----------------- 353 (771)
T TIGR01069 294 GKIILENARHPLLKEP-KVV--PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI----------------- 353 (771)
T ss_pred CCEEEccccCceecCC-ceE--eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC-----------------
Confidence 3577777654222110 111 268888887 99999999999999999999987 4555541
Q ss_pred cceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccC-CCCCChHHHHHHHHHHHhcC
Q 005302 576 GRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVD-DDLLSGGQKQRIAIARAILR 654 (703)
Q Consensus 576 ~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vG-e~~LSGGQkQRIaLARAL~r 654 (703)
+||.+... .-.+.+++.. +.+++ ++... -+++|+|++|+..+++++ .
T Consensus 354 ----~Vpa~~~~-~~~~~d~i~~----~i~~~----------------------~si~~~LStfS~~m~~~~~il~~~-~ 401 (771)
T TIGR01069 354 ----PIPANEHS-EIPYFEEIFA----DIGDE----------------------QSIEQNLSTFSGHMKNISAILSKT-T 401 (771)
T ss_pred ----CccCCccc-cccchhheee----ecChH----------------------hHHhhhhhHHHHHHHHHHHHHHhc-C
Confidence 33332210 0011222211 11110 11111 256999999999999988 8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHHh----CCcEEEEecchhHH
Q 005302 655 DPTILILDEATSALDAESEHNIKV-ATLS----NGLLVKSLHFLSLY 696 (703)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~-al~~----~~~~~~~~~~~~~~ 696 (703)
+|++++||||++++|+..-..+.. .++. -...+-+-|+..+-
T Consensus 402 ~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 402 ENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred CCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 899999999999999988887743 3332 23456677887653
No 427
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.01 E-value=2e-09 Score=109.72 Aligned_cols=131 Identities=19% Similarity=0.225 Sum_probs=84.4
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhc--CCCCCcceEEECCEeCCCCChHHhhcceEEEccCCcccc--cc
Q 005302 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLR--LYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFR--MD 591 (703)
Q Consensus 516 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlg--ly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~--gT 591 (703)
.|-+|++++=..+..++|+||+|+||||++|.+.. .. ++.|...... ...+++..|.-.-+. +|
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccC
Confidence 46666665422237999999999999999999983 33 6667665321 234677777532111 01
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHH
Q 005302 592 ISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAE 671 (703)
Q Consensus 592 I~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~ 671 (703)
+.+++ ..| .-+-||+++|+++..+|++++||||++++|+.
T Consensus 85 i~~~~----------------------S~f------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~ 124 (213)
T cd03281 85 VSSGQ----------------------SAF------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTE 124 (213)
T ss_pred hhhcc----------------------chH------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHH
Confidence 11111 111 34569999999999999999999999999986
Q ss_pred HHHHH-H---HHHHhC----CcEEEEecchhHHHH
Q 005302 672 SEHNI-K---VATLSN----GLLVKSLHFLSLYVL 698 (703)
Q Consensus 672 tE~~I-~---~al~~~----~~~~~~~~~~~~~~~ 698 (703)
....+ . +.+.+. +-.+=+-|+..+.-.
T Consensus 125 ~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 125 DGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 53322 2 333322 246778898876543
No 428
>PRK14079 recF recombination protein F; Provisional
Probab=98.97 E-value=7.6e-09 Score=113.09 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=43.8
Q ss_pred CCChHHHHHHHHHHHhc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 637 LLSGGQKQRIAIARAIL---------RDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 637 ~LSGGQkQRIaLARAL~---------r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
-+|+||++++++|++|. .+|++++||||||.||.+....+.+.|.+.
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~ 318 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL 318 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC
Confidence 48999999999999998 899999999999999999999999988654
No 429
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.96 E-value=7e-06 Score=90.81 Aligned_cols=251 Identities=12% Similarity=0.107 Sum_probs=146.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHH
Q 005302 216 EIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVI 295 (703)
Q Consensus 216 d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l 295 (703)
|...+.........++++......+..+ +.+++..+||..+=++++.. |+..++...-=.|+..|++...+..
T Consensus 133 d~~~F~~~l~~f~~i~~~~v~l~v~~~~----~~~~l~irWR~wLT~~yl~~---Wl~~r~ienPDQRIqEDi~~F~~~t 205 (409)
T PRK11098 133 TIGQFYSEVGVFLGIALIAVVISVLNNF----FVSHYVFRWRTAMNEYYMAH---WQKLRHIEGAAQRVQEDTMRFASTL 205 (409)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH---HHhcCCCCCccHhHHHHHHHHHHHH
Confidence 3333333333333333333334444444 45566677777777766651 1111222224468888888877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 296 GNDLNLILRNVLQGTGALIYLIVLSWPL-------------GLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEV 362 (703)
Q Consensus 296 ~~~l~~~i~~~l~~i~~li~m~~~s~~L-------------alv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~ 362 (703)
.+....++.++++.+..+.++..+|..+ ..++++-..+-.++..+.++...+...+.++..|.....
T Consensus 206 l~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~ 285 (409)
T PRK11098 206 ENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKE 285 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHH
Confidence 6666777778888888888888888653 222222222222223344444444433333323333322
Q ss_pred HHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHH
Q 005302 363 AQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTK 442 (703)
Q Consensus 363 ~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~a 442 (703)
+.-.=.+ .|+.+.++.++..++..+...+.-.....++...+....+..++-..+.+.....|++|.|.+..
T Consensus 286 LVrvren--------aE~~E~~~L~~~F~~V~~N~~rl~~~~~~l~~f~~~y~~~~~i~P~iv~aP~y~aG~ItlG~l~Q 357 (409)
T PRK11098 286 LVYGEDD--------ADRATPPTVRELFSNVRKNYFRLYFHYMYFNIARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQ 357 (409)
T ss_pred HhHhhhh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHHHH
Confidence 2111011 11233345555555544443343333334444444455555666666678888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 005302 443 FILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLM 481 (703)
Q Consensus 443 fi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~ 481 (703)
.....+++.+++..+++.+.++.......+|+.++.+.-
T Consensus 358 ~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~~l 396 (409)
T PRK11098 358 ITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAAL 396 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887643
No 430
>PRK12369 putative transporter; Reviewed
Probab=98.96 E-value=1.2e-05 Score=87.10 Aligned_cols=239 Identities=13% Similarity=0.047 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 227 LILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNV 306 (703)
Q Consensus 227 l~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~ 306 (703)
+.+++++.........| +..++..+||..+-+|+++.=...-+.-+--| .|+..|++...+...+....++.++
T Consensus 69 f~~~~~~~v~~~v~~~~----~~~~l~i~WR~wLT~~~l~~wl~~~~~iDNPD--QRI~EDi~~f~~~tl~l~~~~i~s~ 142 (326)
T PRK12369 69 FLAIAMPYVLIATVVDY----FASHYAFRWREAMTFSYLKFWRNKRDNIEGSS--QRIQEDTYRFAKIMESLGLSFLRAI 142 (326)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc--HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444 44455567777666666653211000011122 6899999887777767777778888
Q ss_pred HHHHHHHHHHHHHhHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 005302 307 LQGTGALIYLIVLSWPLGL------------CTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVR 374 (703)
Q Consensus 307 l~~i~~li~m~~~s~~Lal------------v~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK 374 (703)
++.+....++..+|..+.. ++++...+-.++..+.++...+...+.++..|...-.+ ++
T Consensus 143 ~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~L---vr------ 213 (326)
T PRK12369 143 MTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKEL---VY------ 213 (326)
T ss_pred HHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHH---Hh------
Confidence 8888888888887754432 11222222222233344433333222222222222211 11
Q ss_pred HhCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHH
Q 005302 375 VYGTEK--QEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIY 452 (703)
Q Consensus 375 ~~~~e~--~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~ 452 (703)
.-..++ .|.++.++..++..+...+.-.+....+........+..++-..+.+.....|++|.|.+........++.+
T Consensus 214 vre~ae~~~E~~~l~~~f~~v~~n~~~~~~~~~~l~~~~~~y~~~~~i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~ 293 (326)
T PRK12369 214 AEDDKKNYAKPETLIELFTGLRFNYFRLFLHYGYFNIWLISFSQMMVIVPYLIMAPGLFAGVITLGVLMQISNAFSQVRS 293 (326)
T ss_pred hccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHH
Confidence 111111 112444444444433323332233333444444444555555666778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005302 453 STWWVGDNLSSLMQSVGASEKVFQLMDL 480 (703)
Q Consensus 453 ~~~~l~~~~~~l~~~~~~~~Ri~dil~~ 480 (703)
++..+.+.+.++.......+|+.++.+.
T Consensus 294 als~~v~~y~~la~~~A~~~RL~~f~~~ 321 (326)
T PRK12369 294 SFSVFIRNWTTITELRSIYKRLKEFEKN 321 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988654
No 431
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.95 E-value=1.7e-09 Score=110.65 Aligned_cols=133 Identities=18% Similarity=0.166 Sum_probs=84.1
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhc-CCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHH
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLR-LYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDIS 593 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlg-ly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~ 593 (703)
..+.+|+++++++|++++|+||||+||||+++.+.+ .+.++.|.....- +.....+.+-..-+.- ++++.
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~----~~~~~~~~~i~~~~~~-----~d~~~ 88 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS----SATLSIFDSVLTRMGA-----SDSIQ 88 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC----ceEEeccceEEEEecC-----ccccc
Confidence 578999999999999999999999999999999999 8889999865422 1111112222222211 11233
Q ss_pred HHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCC---CCCCCH
Q 005302 594 SNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEA---TSALDA 670 (703)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEa---TSaLD~ 670 (703)
+|.+.| ..|+.+..+. +. -..+|+++||||+ |+.+|.
T Consensus 89 ~~~StF------~~e~~~~~~i------l~----------------------------~~~~~sLvllDE~~~gT~~~d~ 128 (222)
T cd03287 89 HGMSTF------MVELSETSHI------LS----------------------------NCTSRSLVILDELGRGTSTHDG 128 (222)
T ss_pred cccchH------HHHHHHHHHH------HH----------------------------hCCCCeEEEEccCCCCCChhhH
Confidence 333332 1122222111 11 1257899999997 666666
Q ss_pred HH-HHHHHHHHHhC--CcEEEEecchhHH
Q 005302 671 ES-EHNIKVATLSN--GLLVKSLHFLSLY 696 (703)
Q Consensus 671 ~t-E~~I~~al~~~--~~~~~~~~~~~~~ 696 (703)
.+ ...+.+.+.+. ...+-+-|+..+-
T Consensus 129 ~~i~~~il~~l~~~~~~~~i~~TH~~~l~ 157 (222)
T cd03287 129 IAIAYATLHYLLEEKKCLVLFVTHYPSLG 157 (222)
T ss_pred HHHHHHHHHHHHhccCCeEEEEcccHHHH
Confidence 66 34566666654 4677788887764
No 432
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.93 E-value=3.3e-09 Score=117.93 Aligned_cols=116 Identities=18% Similarity=0.158 Sum_probs=90.8
Q ss_pred CCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEEC---CEeCCCCChHH
Q 005302 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILID---GFPIKEVDIKW 573 (703)
Q Consensus 497 ~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~id---G~di~~i~~~~ 573 (703)
.+.++.++++..|..+ ..+++.++ +|.+||+++|+|+||||||||++.|.|+.+|+.|.|.+. |.++.++..+.
T Consensus 137 p~~~~r~~v~~~l~TG--i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~ 213 (450)
T PRK06002 137 PPAMTRARVETGLRTG--VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDT 213 (450)
T ss_pred CCCeEeecceEEcCCC--cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHH
Confidence 4569999999999753 57999996 999999999999999999999999999999999999885 56766554433
Q ss_pred ----hhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccC
Q 005302 574 ----LRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVD 634 (703)
Q Consensus 574 ----lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vG 634 (703)
.++.|++|+|.+ +...+++..+--...+.|+... +|+|-++=
T Consensus 214 l~~~r~rtI~vV~qsd-----------------~~~~~r~~~~~~a~~iAEyfrd--~G~~Vll~ 259 (450)
T PRK06002 214 LADNLKKAVAVVATSD-----------------ESPMMRRLAPLTATAIAEYFRD--RGENVLLI 259 (450)
T ss_pred HHHhhCCeEEEEEcCC-----------------CCHHHHHHHHHHHHHHHHHHHH--cCCCEEEe
Confidence 236799999975 2345666655555566777764 47777653
No 433
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.92 E-value=7.9e-09 Score=115.46 Aligned_cols=141 Identities=21% Similarity=0.246 Sum_probs=106.6
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE---eCCC-----CChHHhhcceEEEccCCc
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF---PIKE-----VDIKWLRGRIGFVGQEPK 586 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~---di~~-----i~~~~lR~~I~~V~Qd~~ 586 (703)
..+++++ +++++||+++|+|+||+|||||+++|+|+++|+.|.|.+.|+ ++.+ ++.+.+++.|.+|.+.+
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~- 223 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD- 223 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC-
Confidence 4689999 999999999999999999999999999999999999999554 4443 45566888899997643
Q ss_pred cccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCC-hHHHHH-HHHHHHhcCCCCEEEEeCC
Q 005302 587 LFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLS-GGQKQR-IAIARAILRDPTILILDEA 664 (703)
Q Consensus 587 LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LS-GGQkQR-IaLARAL~r~p~ILILDEa 664 (703)
+...+++..+--...+.|+..+ +|+|-++==.+++ =-|-|| |++ +..+|+ +
T Consensus 224 ----------------~~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~Dsltr~A~A~rEisl---~~ge~P------~ 276 (438)
T PRK07721 224 ----------------QPALMRIKGAYTATAIAEYFRD--QGLNVMLMMDSVTRVAMAQREIGL---AVGEPP------T 276 (438)
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEeChHHHHHHHHHHHH---hcCCCC------c
Confidence 3346777766666677788875 4888877533333 122222 222 235666 8
Q ss_pred CCCCCHHHHHHHHHHHHhCC
Q 005302 665 TSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 665 TSaLD~~tE~~I~~al~~~~ 684 (703)
|+++|+..-..+.+.+++.+
T Consensus 277 ~~G~dp~~~~~l~~ller~~ 296 (438)
T PRK07721 277 TKGYTPSVFAILPKLLERTG 296 (438)
T ss_pred cccCCHHHHHHHHHHHHHhc
Confidence 99999999999998888765
No 434
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.91 E-value=2e-09 Score=129.75 Aligned_cols=75 Identities=23% Similarity=0.281 Sum_probs=57.3
Q ss_pred HHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHhCCc----EEEEec
Q 005302 620 DFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDP--TILILDEATSALDAESEHNIKVATLSNGL----LVKSLH 691 (703)
Q Consensus 620 d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p--~ILILDEaTSaLD~~tE~~I~~al~~~~~----~~~~~~ 691 (703)
+++..+..+|-+ .+. ..|||||+||+.|||||..+| +++||||||++||+++.+++.+.|+++.+ ++=.-|
T Consensus 469 ~~L~~vgL~~l~-l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeH 547 (924)
T TIGR00630 469 GFLIDVGLDYLT-LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEH 547 (924)
T ss_pred HhHhhccccccc-cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 344554444433 343 589999999999999999986 89999999999999999999999876643 444456
Q ss_pred chhH
Q 005302 692 FLSL 695 (703)
Q Consensus 692 ~~~~ 695 (703)
-+..
T Consensus 548 d~~~ 551 (924)
T TIGR00630 548 DEET 551 (924)
T ss_pred CHHH
Confidence 5543
No 435
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.91 E-value=6.7e-10 Score=111.82 Aligned_cols=93 Identities=28% Similarity=0.351 Sum_probs=73.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCC------------CCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHH
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYE------------PTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDIS 593 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~------------p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~ 593 (703)
++|+.++|+||||||||||++.|++.++ |..|+ +||.|+..++.+.+++.+ .|+.+++.+++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 6899999999999999999999999986 88899 699999999999988854 688889999999
Q ss_pred HHhccCCCCCCCHHHHHHHHHH----------hchHHHHHcCCCC
Q 005302 594 SNISYGCTQDIKQQDIEWAAKQ----------AYAHDFIMSLPSG 628 (703)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa~~----------A~l~d~I~~LP~G 628 (703)
+| .++. +.+.+.++++. .+.......+|++
T Consensus 78 ~~-~y~~----~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~ 117 (205)
T PRK00300 78 GN-YYGT----PRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDA 117 (205)
T ss_pred Cc-cccC----cHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCc
Confidence 88 4653 34555555432 3445566666644
No 436
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.90 E-value=2.6e-09 Score=129.03 Aligned_cols=59 Identities=25% Similarity=0.263 Sum_probs=50.1
Q ss_pred CCCChHHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHhCCc----EEEEecchh
Q 005302 636 DLLSGGQKQRIAIARAILRDP--TILILDEATSALDAESEHNIKVATLSNGL----LVKSLHFLS 694 (703)
Q Consensus 636 ~~LSGGQkQRIaLARAL~r~p--~ILILDEaTSaLD~~tE~~I~~al~~~~~----~~~~~~~~~ 694 (703)
.+|||||||||+|||||..+| +++||||||++||++..+.+.+.|+++.+ ++=.-|-+.
T Consensus 488 ~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~ 552 (943)
T PRK00349 488 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED 552 (943)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 489999999999999999997 99999999999999999999999876533 334446544
No 437
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.88 E-value=1e-08 Score=110.18 Aligned_cols=121 Identities=17% Similarity=0.225 Sum_probs=81.8
Q ss_pred eeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCC
Q 005302 521 VNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGC 600 (703)
Q Consensus 521 isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~ 600 (703)
+++.+++|+.++|+|++||||||+++.|+++++|+.|.+.|+ |..++.... ++.+.++.|... + +.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~~-------~----~~ 202 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKGG-------Q----GL 202 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCCC-------C----Cc
Confidence 557788999999999999999999999999999999998885 455554432 333443322100 0 00
Q ss_pred CCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 005302 601 TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVAT 680 (703)
Q Consensus 601 ~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al 680 (703)
. ..+. .=+++++|-.+|+++++||+.+ .+....++..-
T Consensus 203 ~-~~~~--------------------------------------~~~l~~~Lr~~pd~ii~gE~r~---~e~~~~l~a~~ 240 (308)
T TIGR02788 203 A-KVTP--------------------------------------KDLLQSCLRMRPDRIILGELRG---DEAFDFIRAVN 240 (308)
T ss_pred C-ccCH--------------------------------------HHHHHHHhcCCCCeEEEeccCC---HHHHHHHHHHh
Confidence 0 1221 1245667888999999999997 45554444443
Q ss_pred HhCCcEEEEecchhHHH
Q 005302 681 LSNGLLVKSLHFLSLYV 697 (703)
Q Consensus 681 ~~~~~~~~~~~~~~~~~ 697 (703)
....+.+-++|-.+..-
T Consensus 241 ~g~~~~i~T~Ha~~~~~ 257 (308)
T TIGR02788 241 TGHPGSITTLHAGSPEE 257 (308)
T ss_pred cCCCeEEEEEeCCCHHH
Confidence 44445589999877543
No 438
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.87 E-value=3.5e-09 Score=117.52 Aligned_cols=137 Identities=17% Similarity=0.184 Sum_probs=99.9
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
+.++-++++-.|... ..+++++ +++.+||+++|+|+||+|||||++.|+|..+|+.|.|.+.|+.-++
T Consensus 129 ~~~~r~~i~~~l~TG--iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~e--------- 196 (432)
T PRK06793 129 HAFEREEITDVFETG--IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGRE--------- 196 (432)
T ss_pred CchheechhhccCCC--CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCccc---------
Confidence 346777787777643 4688885 9999999999999999999999999999999998888766644422
Q ss_pred eEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccc-cCCCCCChHHHHHHHHHHHhc---
Q 005302 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETL-VDDDLLSGGQKQRIAIARAIL--- 653 (703)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~-vGe~~LSGGQkQRIaLARAL~--- 653 (703)
++|.+. +.++..++ .+-+. +...+-|.|+|+|.+.+.+..
T Consensus 197 --------------v~e~~~-------------~~l~~~gl---------~~tvvv~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 197 --------------VKDFIR-------------KELGEEGM---------RKSVVVVATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred --------------HHHHHH-------------HHhhhccc---------ceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 222221 01111111 01112 233678999999999998887
Q ss_pred ----CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 654 ----RDPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 654 ----r~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
.++-+|++||+|...|+. ++|..++.+.+
T Consensus 241 fr~~G~~VLlilDslTr~a~A~--reisl~~~e~p 273 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELP 273 (432)
T ss_pred HHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCC
Confidence 789999999999999997 55656666665
No 439
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.86 E-value=1.9e-05 Score=83.95 Aligned_cols=196 Identities=16% Similarity=0.129 Sum_probs=126.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CchhhcccC----HhHHHHHHHHH
Q 005302 215 SEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQ---DISFFDSET----VGDLTSRLGSD 287 (703)
Q Consensus 215 ~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~l---p~~~fe~r~----~Gdi~sR~~sd 287 (703)
.|...+........++++..+++.....|+ ...+..+||+.+-+++.+. .-.||.-.. .-..=.|++.|
T Consensus 60 ~d~~~f~~~l~~~~~l~~~~~~l~~~~~yl----~~~L~l~wR~~Lt~~~~~~yl~~~~yY~l~~~~~~idNpDQRIteD 135 (281)
T PF06472_consen 60 KDLQAFWRLLLLFLLLAIASALLNSILKYL----RQRLALRWREWLTRHLHDRYLSNRTYYRLNNLDGRIDNPDQRITED 135 (281)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcCCchhHhhhccccccccHhhHHHHH
Confidence 344444444444444444445555544444 4455556666555555543 225554332 23445799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 288 CQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMI-CSALAGLMLIYGLYQKKAAKLVQEITASANEVAQET 366 (703)
Q Consensus 288 i~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~-~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~ 366 (703)
++...+...+....++..++..+...+.+...+..++..++.+ ..+-.++....++...+...+.++..+.........
T Consensus 136 i~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~ 215 (281)
T PF06472_consen 136 IRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRL 215 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHH
Confidence 9998888877777888888888888888888887777733333 333344455666666666555555567777788888
Q ss_pred HhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 367 FSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNML 414 (703)
Q Consensus 367 l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~l 414 (703)
.++.+.|-.++.|+.|.++.++......+...+..+....++.+.++.
T Consensus 216 r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~ 263 (281)
T PF06472_consen 216 RENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRRRLRLGFFTNFY 263 (281)
T ss_pred HHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999988887776555544444444444443
No 440
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.86 E-value=2.8e-09 Score=106.12 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=41.2
Q ss_pred CCCChHHHHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHH----HHh--CCcEEEEecchhHH
Q 005302 636 DLLSGGQKQRIAIARAILR--DPTILILDEATSALDAESEHNIKVA----TLS--NGLLVKSLHFLSLY 696 (703)
Q Consensus 636 ~~LSGGQkQRIaLARAL~r--~p~ILILDEaTSaLD~~tE~~I~~a----l~~--~~~~~~~~~~~~~~ 696 (703)
+.+|+|++| +++++.. +|+++++||||+++|+.....+... +.+ ....+=+-|+..+.
T Consensus 60 s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~ 125 (185)
T smart00534 60 STFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELT 125 (185)
T ss_pred cHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHH
Confidence 578888887 4555555 9999999999999999876665333 222 23466677887643
No 441
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.81 E-value=2.5e-08 Score=102.83 Aligned_cols=131 Identities=15% Similarity=0.187 Sum_probs=77.6
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHH-HHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTL-VNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTL-lkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
.|..++++..+++ -+++|+.+.|+|++||||||+ .+++.++.++.++.++
T Consensus 7 ~~~~~~ld~~l~g------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~y----------------- 57 (230)
T PRK08533 7 ELSRDELHKRLGG------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSY----------------- 57 (230)
T ss_pred EEEEeeeehhhCC------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEE-----------------
Confidence 3666777666653 289999999999999999999 6999998765433333
Q ss_pred eEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhch--HHHHHcCCCCcccccC-CCCCChHHHHHHHHHHHhcC
Q 005302 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYA--HDFIMSLPSGYETLVD-DDLLSGGQKQRIAIARAILR 654 (703)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l--~d~I~~LP~GydT~vG-e~~LSGGQkQRIaLARAL~r 654 (703)
+..+. +.+++.+-++..+. ++++.. ..+. .+. ...+|+++.++-.++|.+-.
T Consensus 58 ---i~~e~-------------------~~~~~~~~~~~~g~~~~~~~~~--~~l~-~~~~~~~~~~~~~~~~~l~~il~~ 112 (230)
T PRK08533 58 ---VSTQL-------------------TTTEFIKQMMSLGYDINKKLIS--GKLL-YIPVYPLLSGNSEKRKFLKKLMNT 112 (230)
T ss_pred ---EeCCC-------------------CHHHHHHHHHHhCCchHHHhhc--CcEE-EEEecccccChHHHHHHHHHHHHH
Confidence 32111 11121111111111 111110 0000 000 02467777666565555443
Q ss_pred ----CCCEEEEeCCCCCC----CHHHHHHHHHHHHhC
Q 005302 655 ----DPTILILDEATSAL----DAESEHNIKVATLSN 683 (703)
Q Consensus 655 ----~p~ILILDEaTSaL----D~~tE~~I~~al~~~ 683 (703)
+|+++++||||+.+ |+...+.+.+.++++
T Consensus 113 ~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l 149 (230)
T PRK08533 113 RRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRI 149 (230)
T ss_pred HHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHH
Confidence 69999999999999 766667777776643
No 442
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.81 E-value=1.8e-05 Score=80.47 Aligned_cols=168 Identities=12% Similarity=0.156 Sum_probs=117.5
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 176 LVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKR 255 (703)
Q Consensus 176 ~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~ 255 (703)
.++.+++.+...+.+.++..++.+..|.+.+..|+....++.. ....+.++.++..+....|..+-.+.-.++-..
T Consensus 4 I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~~~----~~~~~~~~~l~~~~igaaRR~~DTRvf~rIy~~ 79 (237)
T PF13748_consen 4 IARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGDVW----QALMYAALVLLMWAIGAARRIYDTRVFSRIYAE 79 (237)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH----HHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHH
Confidence 4678889999999999999999999999999887654333311 112233333344555566655555444444444
Q ss_pred HHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005302 256 MRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALA 335 (703)
Q Consensus 256 lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~~ 335 (703)
+-..++.+-- -++.+.+.+..|.+ -..++-+++...++.++.+++..+++.+|++.+++++++.+++...+..
T Consensus 80 la~~vi~~qr------~~~~~~S~i~ARv~-lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~l~~~~ 152 (237)
T PF13748_consen 80 LAVPVILSQR------QQGLSVSTIAARVA-LSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLILALFL 152 (237)
T ss_pred HhHHHHHHHH------HhCCChhHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333222 24457889999996 4488999999999999999999999999999999999999888877777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005302 336 GLMLIYGLYQKKAAKLVQE 354 (703)
Q Consensus 336 ~i~~~~~~~~~~~~~~~~~ 354 (703)
++...|.++..+...+..+
T Consensus 153 ~i~~~f~~~~~~L~~~LNn 171 (237)
T PF13748_consen 153 LILPRFARRNYRLYRRLNN 171 (237)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 7666666555554444433
No 443
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.76 E-value=7.6e-09 Score=111.52 Aligned_cols=154 Identities=24% Similarity=0.332 Sum_probs=97.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC----------------ChHHhhc--ceEEEccCCcc
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV----------------DIKWLRG--RIGFVGQEPKL 587 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i----------------~~~~lR~--~I~~V~Qd~~L 587 (703)
.||+..++||.+|-||||-+|.|+|-.+|+-|.- -++-+-.++ ..+.++. ..-||.|=|-.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~-~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRY-DNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCC-CCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 5799999999999999999999999999998864 222221110 0011111 11244444445
Q ss_pred ccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHhcCCCCEEEEeCCCC
Q 005302 588 FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD-DLLSGGQKQRIAIARAILRDPTILILDEATS 666 (703)
Q Consensus 588 F~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe-~~LSGGQkQRIaLARAL~r~p~ILILDEaTS 666 (703)
-.|++.+++.--++ .-+.+++.++.++-++++ -| ..||||+-||.+||-|-.+++++.++|||.|
T Consensus 177 ~k~~v~~~l~~~~~-r~~~~~~~~~~~L~~~~~-------------re~~~lsggelqrfaia~~~vq~advyMFDEpSs 242 (592)
T KOG0063|consen 177 VKGTVGSLLDRKDE-RDNKEEVCDQLDLNNLLD-------------REVEQLSGGELQRFAIAMVCVQKADVYMFDEPSS 242 (592)
T ss_pred HHHHHHHHHHHHhh-cccHHHHHHHHHHhhHHH-------------hhhhhcccchhhhhhhhhhhhhhcceeEecCCcc
Confidence 55556555543322 113333333333322222 24 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHh----CCcEEEEecchh
Q 005302 667 ALDAESEHNIKVATLS----NGLLVKSLHFLS 694 (703)
Q Consensus 667 aLD~~tE~~I~~al~~----~~~~~~~~~~~~ 694 (703)
-||.....+--..|+. .+..+---|=||
T Consensus 243 YLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLs 274 (592)
T KOG0063|consen 243 YLDVKQRLKAAITIRSLINPDRYIIVVEHDLS 274 (592)
T ss_pred cchHHHhhhHHHHHHHhhCCCCeEEEEEeech
Confidence 9999776555555543 344444445443
No 444
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.76 E-value=5.5e-08 Score=96.88 Aligned_cols=126 Identities=19% Similarity=0.222 Sum_probs=84.4
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHH
Q 005302 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSN 595 (703)
Q Consensus 516 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eN 595 (703)
...+-+.+.+++|+.++|+||+||||||+++.|+|+++|++|.|.+.+.+--.+ ..+..++++.|++..
T Consensus 13 ~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~---~~~~~~~~~~~~~~~-------- 81 (186)
T cd01130 13 LQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL---PHPNWVRLVTRPGNV-------- 81 (186)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC---CCCCEEEEEEecCCC--------
Confidence 355667788999999999999999999999999999999999999977433222 124456666554311
Q ss_pred hccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHH
Q 005302 596 ISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHN 675 (703)
Q Consensus 596 I~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~ 675 (703)
. +.+ ..+. .-++..++-.+|++++++|--. .+....
T Consensus 82 -~-~~~-~~~~--------------------------------------~~~l~~~lR~~pd~i~igEir~---~ea~~~ 117 (186)
T cd01130 82 -E-GSG-EVTM--------------------------------------ADLLRSALRMRPDRIIVGEVRG---GEALDL 117 (186)
T ss_pred -C-CCC-ccCH--------------------------------------HHHHHHHhccCCCEEEEEccCc---HHHHHH
Confidence 0 001 1111 1123345557899999999864 555555
Q ss_pred HHHHHHhCCcEEEEecchhHH
Q 005302 676 IKVATLSNGLLVKSLHFLSLY 696 (703)
Q Consensus 676 I~~al~~~~~~~~~~~~~~~~ 696 (703)
++.+.....+.+-++|--|..
T Consensus 118 ~~a~~tGh~g~~~T~Ha~s~~ 138 (186)
T cd01130 118 LQAMNTGHPGGMTTIHANSAE 138 (186)
T ss_pred HHHHhcCCCCceeeecCCCHH
Confidence 555444444588888876643
No 445
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.74 E-value=1.2e-07 Score=86.89 Aligned_cols=97 Identities=44% Similarity=0.532 Sum_probs=74.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCc-ceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPTN-GQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIK 605 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly~p~s-G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~ 605 (703)
+|..+.|+||+||||||+++.+++.+.... +.+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 478999999999999999999999998765 5666666554443332222
Q ss_pred HHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHH
Q 005302 606 QQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIK 677 (703)
Q Consensus 606 ~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~ 677 (703)
....++ ....+++.++..+++|-..+|+++++||+.+..+........
T Consensus 51 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~ 100 (148)
T smart00382 51 ------------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLL 100 (148)
T ss_pred ------------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence 111111 367899999999999999999999999999999998877554
No 446
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.68 E-value=1.7e-07 Score=112.13 Aligned_cols=64 Identities=14% Similarity=0.303 Sum_probs=49.9
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHH-H---HhC-CcEEEEecchhHHHHhh
Q 005302 636 DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVA-T---LSN-GLLVKSLHFLSLYVLIC 700 (703)
Q Consensus 636 ~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~a-l---~~~-~~~~~~~~~~~~~~~~~ 700 (703)
+.+|+|++|+..|+|++ .+|++++||||++++|+.....+..+ + .+. ...+-+-|+..+-...+
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~ 457 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMY 457 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHh
Confidence 57999999999999999 89999999999999999877766443 3 232 34566778877655443
No 447
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.68 E-value=6.5e-08 Score=97.43 Aligned_cols=108 Identities=25% Similarity=0.356 Sum_probs=72.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC-cceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHH
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLYEPT-NGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQD 608 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly~p~-sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~ 608 (703)
.+.|+||+||||||+++.|++.+++. .|.|..-+.|+. +..+ ...+++.|... +
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~---~~~~~i~q~~v------------g--------- 57 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHE---SKRSLINQREV------------G--------- 57 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cccc---Cccceeeeccc------------C---------
Confidence 68999999999999999999988754 677776555542 2111 11222333110 1
Q ss_pred HHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcEEE
Q 005302 609 IEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGLLVK 688 (703)
Q Consensus 609 i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~~~ 688 (703)
.+. ..++. ++++||..+|+++++||+. |.++-..+.++...-...+-
T Consensus 58 --------------------~~~----~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~a~~G~~v~~ 104 (198)
T cd01131 58 --------------------LDT----LSFEN------ALKAALRQDPDVILVGEMR---DLETIRLALTAAETGHLVMS 104 (198)
T ss_pred --------------------CCc----cCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHHHHcCCEEEE
Confidence 000 01111 4889999999999999996 78877777777777677888
Q ss_pred EecchhH
Q 005302 689 SLHFLSL 695 (703)
Q Consensus 689 ~~~~~~~ 695 (703)
++|-.+.
T Consensus 105 t~Ha~~~ 111 (198)
T cd01131 105 TLHTNSA 111 (198)
T ss_pred EecCCcH
Confidence 8997654
No 448
>PRK01889 GTPase RsgA; Reviewed
Probab=98.66 E-value=1.4e-08 Score=111.20 Aligned_cols=133 Identities=23% Similarity=0.212 Sum_probs=93.1
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHh
Q 005302 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNI 596 (703)
Q Consensus 517 vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI 596 (703)
-++.+.-.+++|++++|+|+||+|||||++.|+|...|..|+|.++|..-.. ...++++.+++|+..+|+.+-..|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 3566677789999999999999999999999999999999999998865433 3346789999999999999888898
Q ss_pred ccCCCCC---CCHHHHHHHHHHhchHHHHHcCCCC--cccccCCCCCChHHHHHHHHHHHhcCC
Q 005302 597 SYGCTQD---IKQQDIEWAAKQAYAHDFIMSLPSG--YETLVDDDLLSGGQKQRIAIARAILRD 655 (703)
Q Consensus 597 ~~g~~~~---~~~e~i~~aa~~A~l~d~I~~LP~G--ydT~vGe~~LSGGQkQRIaLARAL~r~ 655 (703)
.+.++.. ....++.+.++.+..++-...-..| ...-+.+..|| ++|..--+.|+++
T Consensus 261 ~l~~~~~~l~~~f~~~~~~~~~c~f~~c~h~~E~~c~v~~a~~~~~i~---~~r~~~Y~~l~~e 321 (356)
T PRK01889 261 QLWDAEDGVEETFSDIEELAAQCRFRDCAHEAEPGCAVQAAIENGELD---ERRLQSYRKLQRE 321 (356)
T ss_pred cccCchhhHHHhHHHHHHHHccCCCCCCCCCCCCCChHHHHHHcCCCC---HHHHHHHHHHHHH
Confidence 8875311 1113444444444433222111111 11111123675 8999999988876
No 449
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.65 E-value=1.7e-08 Score=117.03 Aligned_cols=75 Identities=29% Similarity=0.343 Sum_probs=59.1
Q ss_pred HHHHHHHhchHHHHHcCCCCcccccCC--------CCCChHHHHHHHHHHHhc----------CCCCEEEEeCCC-CCCC
Q 005302 609 IEWAAKQAYAHDFIMSLPSGYETLVDD--------DLLSGGQKQRIAIARAIL----------RDPTILILDEAT-SALD 669 (703)
Q Consensus 609 i~~aa~~A~l~d~I~~LP~GydT~vGe--------~~LSGGQkQRIaLARAL~----------r~p~ILILDEaT-SaLD 669 (703)
+.+.++..+. ++...+|+++++.+++ .+||||||||++|||||+ .+|++||||||| ++||
T Consensus 433 ~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld 511 (562)
T PHA02562 433 INHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALD 511 (562)
T ss_pred HHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccc
Confidence 3334444332 4444567788887743 379999999999999987 599999999998 7899
Q ss_pred HHHHHHHHHHHHhCC
Q 005302 670 AESEHNIKVATLSNG 684 (703)
Q Consensus 670 ~~tE~~I~~al~~~~ 684 (703)
+++...+.+.|.++.
T Consensus 512 ~~~~~~~~~~l~~~~ 526 (562)
T PHA02562 512 AEGTKALLSILDSLK 526 (562)
T ss_pred hhHHHHHHHHHHhCC
Confidence 999999999999873
No 450
>PRK08149 ATP synthase SpaL; Validated
Probab=98.59 E-value=8.9e-08 Score=106.33 Aligned_cols=100 Identities=17% Similarity=0.202 Sum_probs=79.2
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc---ceEEECCEeCCCCChHHhh----cceEEEccCCcc
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN---GQILIDGFPIKEVDIKWLR----GRIGFVGQEPKL 587 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~s---G~I~idG~di~~i~~~~lR----~~I~~V~Qd~~L 587 (703)
..+++++ +++.+||+++|+|+||||||||++.|+|+.+++. |.|-.+|.+++++..+..+ +++++|....
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s-- 215 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS-- 215 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC--
Confidence 4689999 9999999999999999999999999999999998 9999999999887766654 5677775542
Q ss_pred ccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCccccc
Q 005302 588 FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLV 633 (703)
Q Consensus 588 F~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~v 633 (703)
+ +...+++..+--...+.|+... +|+|..+
T Consensus 216 -------------d-~p~~~r~~a~~~a~tiAE~fr~--~G~~Vll 245 (428)
T PRK08149 216 -------------D-FSSVDRCNAALVATTVAEYFRD--QGKRVVL 245 (428)
T ss_pred -------------C-CCHHHHHhHHHHHHHHHHHHHH--cCCCEEE
Confidence 1 3345666665556666777764 3777755
No 451
>PRK13695 putative NTPase; Provisional
Probab=98.58 E-value=6.8e-08 Score=94.98 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=49.0
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHhCCcEEEEecc
Q 005302 637 LLSGGQKQRIAIARAILRDPTILILDE--ATSALDAESEHNIKVATLSNGLLVKSLHF 692 (703)
Q Consensus 637 ~LSGGQkQRIaLARAL~r~p~ILILDE--aTSaLD~~tE~~I~~al~~~~~~~~~~~~ 692 (703)
.+||+++-++.+++...++|+++++|| |+.++|....+.+.++++.-..++-..|-
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~ 135 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHR 135 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECc
Confidence 699999999999999999999999999 66788888888888888777777777775
No 452
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.58 E-value=3.4e-08 Score=109.85 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=62.9
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc---eEEECCEeCCCCChHHh------hcceEEEccCC
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG---QILIDGFPIKEVDIKWL------RGRIGFVGQEP 585 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG---~I~idG~di~~i~~~~l------R~~I~~V~Qd~ 585 (703)
..+++++ ++|.+||+++|+|+||||||||+++|+|+++|+.+ .|-.+|.+++++..+.+ |..+++++||.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 4689999 99999999999999999999999999999999864 34445555555443433 55799999998
Q ss_pred cccc-ccHHHHh
Q 005302 586 KLFR-MDISSNI 596 (703)
Q Consensus 586 ~LF~-gTI~eNI 596 (703)
..+. -+..+|.
T Consensus 222 s~~~rl~a~e~a 233 (434)
T PRK07196 222 SPLMRIKATELC 233 (434)
T ss_pred ChhhhHHHHHHH
Confidence 6653 3455555
No 453
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.43 E-value=2.4e-07 Score=92.17 Aligned_cols=55 Identities=27% Similarity=0.305 Sum_probs=49.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCC
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEP 585 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~ 585 (703)
|+.++|+||||||||||++.|.+.+.| .+.+++..+........++.+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 899999999999999999999999876 5889999888777777788899999983
No 454
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.42 E-value=2.5e-07 Score=101.26 Aligned_cols=88 Identities=25% Similarity=0.262 Sum_probs=67.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCC--Cc-ceEEECCEeCCCCChHHhhcceEEEccCCc-----cccccHHHHhc
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEP--TN-GQILIDGFPIKEVDIKWLRGRIGFVGQEPK-----LFRMDISSNIS 597 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p--~s-G~I~idG~di~~i~~~~lR~~I~~V~Qd~~-----LF~gTI~eNI~ 597 (703)
++|+.++|+||+||||||+++.|++++.+ .+ +.|.....|+ ++..+.+++..+.|.|... -|..+|+++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 58999999999999999999999999853 33 4676666555 5788888777888888743 68899999988
Q ss_pred cCCCCCC-------CHHHHHHHHHHh
Q 005302 598 YGCTQDI-------KQQDIEWAAKQA 616 (703)
Q Consensus 598 ~g~~~~~-------~~e~i~~aa~~A 616 (703)
.. | +. |.|.+..|++.|
T Consensus 211 ~~-P-d~i~vGEiRd~et~~~al~aa 234 (358)
T TIGR02524 211 RK-P-HAILVGEARDAETISAALEAA 234 (358)
T ss_pred cC-C-CEEeeeeeCCHHHHHHHHHHH
Confidence 75 4 32 455556666663
No 455
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.41 E-value=6.4e-07 Score=85.29 Aligned_cols=101 Identities=18% Similarity=0.135 Sum_probs=61.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHH
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDI 609 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i 609 (703)
.++|.|++|+||||+++.+++...+..|.|.+-+.+...-. .+ ++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~---~~------------------~~~~~~---------- 49 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE---LT------------------ERLIGE---------- 49 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH---HH------------------HHHhhh----------
Confidence 37899999999999999999998887777655443322111 11 000000
Q ss_pred HHHHHHhchHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHH
Q 005302 610 EWAAKQAYAHDFIMSLPSGYETLVDD-DLLSGGQKQRIAIARAILRDPTILILDEATSALDAES 672 (703)
Q Consensus 610 ~~aa~~A~l~d~I~~LP~GydT~vGe-~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~t 672 (703)
.....+.+..-.... ..-+.++.++++.+++..++|+++|+||+++-+|...
T Consensus 50 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~ 102 (165)
T cd01120 50 -----------SLKGALDNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALR 102 (165)
T ss_pred -----------hhccccccEEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHH
Confidence 000001111111111 2345566678899999999999999999997655543
No 456
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.41 E-value=1.6e-07 Score=105.85 Aligned_cols=61 Identities=18% Similarity=0.302 Sum_probs=50.0
Q ss_pred eeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccC
Q 005302 520 HVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYG 599 (703)
Q Consensus 520 ~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g 599 (703)
+.+..+++|+++++|||+|+||||++..|++.+.+..|.. .|++|.+|+ |.-+..||+.++
T Consensus 248 ~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQLr~~ 308 (484)
T PRK06995 248 SEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQLRIY 308 (484)
T ss_pred CccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHHHHH
Confidence 3444567899999999999999999999999988777752 578999987 666778888754
No 457
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.40 E-value=4e-07 Score=91.90 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=44.9
Q ss_pred CCChHHHHHHHHHHHhcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHhCCc----EEEEec
Q 005302 637 LLSGGQKQRIAIARAILRDP---TILILDEATSALDAESEHNIKVATLSNGL----LVKSLH 691 (703)
Q Consensus 637 ~LSGGQkQRIaLARAL~r~p---~ILILDEaTSaLD~~tE~~I~~al~~~~~----~~~~~~ 691 (703)
.+|.|+||.+.|+-+++..+ .++++|||-++|++...+.+.+.+.+... ++=+-|
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTH 297 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTH 297 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCc
Confidence 57999999999998888776 99999999999999999999999986654 444545
No 458
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.39 E-value=1.9e-07 Score=92.33 Aligned_cols=65 Identities=25% Similarity=0.318 Sum_probs=46.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhc-ceEEEccCCcc-ccccHHHHhc
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRG-RIGFVGQEPKL-FRMDISSNIS 597 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~-~I~~V~Qd~~L-F~gTI~eNI~ 597 (703)
+||.++|+|+|||||||+++.|.|++.| +.+||.++.. ...+|+ ..++.+|+... ...+..+|++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~--~~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 68 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP--AKNIDKMSQGIPLTDEDRLPWLERLNDAS 68 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC--HhHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 6999999999999999999999999987 6899988854 233333 35566666432 2233444443
No 459
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.36 E-value=3.8e-07 Score=92.35 Aligned_cols=44 Identities=25% Similarity=0.304 Sum_probs=36.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccc
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRM 590 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~g 590 (703)
|+|+.+||+|+||||||||++.|.+++++ ..+++++||+++++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~---------------------~~~~~i~~D~~~~~~ 47 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK---------------------LEIVIISQDNYYKDQ 47 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc---------------------cCCeEecccccccCh
Confidence 67999999999999999999999999763 245667777766543
No 460
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=98.36 E-value=0.0063 Score=64.70 Aligned_cols=218 Identities=11% Similarity=0.070 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----
Q 005302 250 MILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLG----- 324 (703)
Q Consensus 250 ~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~La----- 324 (703)
.....+||..+=+..++- |=..||.-.--.|+..|+.+..+.+-.....++.++++.+..+-+++.+|-.+.
T Consensus 81 shyiFrWR~Am~~yY~~~---W~~~r~IEGASQRIQEDtmrfa~i~E~Lgv~~i~simtliaFlPiL~~lS~~V~~lp~~ 157 (315)
T PF05992_consen 81 SHYIFRWRTAMNEYYMSH---WPKLRHIEGASQRIQEDTMRFAKIMEDLGVSFIRSIMTLIAFLPILWELSSHVSELPFF 157 (315)
T ss_pred HHHHHHHHHHhhHHHHHH---HHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCccc
Confidence 344567777665555541 222356655677999999888887776667777778777777777766553222
Q ss_pred ------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHH
Q 005302 325 ------LC--TLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADI 396 (703)
Q Consensus 325 ------lv--~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~ 396 (703)
++ +++...+-.++..+.+.+.-..+...++..|.... |-+-|=.. ......+. .++...+.++.
T Consensus 158 g~i~~~Lv~~ai~~s~~gt~~l~~vGikLPgLe~~nQkvEAAyRK---eLV~gED~-~~ra~~~t----l~eLF~~Vr~N 229 (315)
T PF05992_consen 158 GEIPHSLVWAAIIWSLFGTILLAFVGIKLPGLEFNNQKVEAAYRK---ELVYGEDD-ANRAQPPT----LRELFSNVRRN 229 (315)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHHH---HHHhcCcc-cccCCchh----HHHHHHHHHHH
Confidence 11 22111111222333444444444333333333333 22222222 11122222 22233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 397 NLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQ 476 (703)
Q Consensus 397 ~~r~~~~~~~~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~d 476 (703)
..|.-..+..++........+..++...+.+..+..|.+|.|.+.......+++.++++.+.+.+..+.+.....+|+.+
T Consensus 230 y~rly~hy~yfni~~~~y~q~~~i~~~i~l~Psi~ag~iTLG~~~Qi~~aF~~V~~sfq~lv~~W~tivEL~Si~kRL~~ 309 (315)
T PF05992_consen 230 YFRLYFHYMYFNIARISYLQFDVIFPYIILIPSIVAGAITLGVLQQISNAFGQVRSSFQYLVNSWTTIVELRSIYKRLRA 309 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333333334444344444455555566666778999999999999999999999999999999999999989999987
Q ss_pred hh
Q 005302 477 LM 478 (703)
Q Consensus 477 il 478 (703)
+-
T Consensus 310 FE 311 (315)
T PF05992_consen 310 FE 311 (315)
T ss_pred HH
Confidence 64
No 461
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.35 E-value=1.5e-06 Score=88.79 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=34.5
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl 551 (703)
..|-+|++|++++|++++|+||+|+||||+++.+.+.
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence 5789999999999999999999999999999988765
No 462
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.35 E-value=3.6e-07 Score=91.63 Aligned_cols=108 Identities=16% Similarity=0.191 Sum_probs=61.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHH-----HhccCCCCCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS-----NISYGCTQDI 604 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~e-----NI~~g~~~~~ 604 (703)
.++|+|||||||||+++.|.+++ ..|.+.+-+.| ++...-+..+ +..+..+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD-------------------SYYKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec-------------------ccccccccccHHHhccCCCCCCCcc
Confidence 37999999999999999999998 33444443333 3221111111 1223323223
Q ss_pred CHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCH
Q 005302 605 KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDA 670 (703)
Q Consensus 605 ~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~ 670 (703)
+.+.+.+.++... .|-....---+.|.|++++-.+ ...+|+++|+|++.+..++
T Consensus 60 ~~~~~~~~l~~l~---------~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 DFDLLISHLQDLK---------NGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred cHHHHHHHHHHHH---------CCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 3343333332222 1211111112567777765444 5688999999999999875
No 463
>PLN02796 D-glycerate 3-kinase
Probab=98.33 E-value=1.8e-07 Score=100.86 Aligned_cols=62 Identities=26% Similarity=0.373 Sum_probs=54.9
Q ss_pred cccceeeeEEe---cCCcE-----EEEEcCCCCcHHHHHHHHhcCCCCC---cceEEECCEeCCCCChHHhhc
Q 005302 515 VPVLQHVNISV---NPGEV-----VAIAGLSGSGKSTLVNLLLRLYEPT---NGQILIDGFPIKEVDIKWLRG 576 (703)
Q Consensus 515 ~~vL~~isl~I---~~Ge~-----vAIVG~SGsGKSTLlkLLlgly~p~---sG~I~idG~di~~i~~~~lR~ 576 (703)
.++++++++.+ ++|+. +||+|+||||||||++.|.+++++. .|.|.+||..+...+...+++
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 47899999998 67887 9999999999999999999999875 689999999988777777766
No 464
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.33 E-value=3.2e-07 Score=90.28 Aligned_cols=77 Identities=32% Similarity=0.400 Sum_probs=55.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCC------------CCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHH
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRLYE------------PTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSN 595 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgly~------------p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eN 595 (703)
|+.++|+||||||||||++.|++.++ |..|+ .+|.+..-++.+.+.+.+ .++.++..+++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 78999999999999999999999874 44454 467776666666666653 57777888778777
Q ss_pred hccCCCCCCCHHHHHHHHH
Q 005302 596 ISYGCTQDIKQQDIEWAAK 614 (703)
Q Consensus 596 I~~g~~~~~~~e~i~~aa~ 614 (703)
.||. ..+.+.++++
T Consensus 76 -~y~~----~~~~i~~~~~ 89 (180)
T TIGR03263 76 -YYGT----PKSPVEEALA 89 (180)
T ss_pred -eeCC----cHHHHHHHHH
Confidence 3652 3455555544
No 465
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.32 E-value=9.3e-07 Score=87.09 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=50.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEE-----------CCEeCCCCChHHhh-----cceEEEccCCcccccc
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILI-----------DGFPIKEVDIKWLR-----GRIGFVGQEPKLFRMD 591 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~i-----------dG~di~~i~~~~lR-----~~I~~V~Qd~~LF~gT 591 (703)
|+.++|+|||||||||+++.|++.+.+. |.+.+ +|.++...+.+.+. +.++.+.|...++.|+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 79 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGI 79 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccC
Confidence 6889999999999999999999998654 65554 77777777766653 4599999998777665
No 466
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.30 E-value=4.2e-06 Score=91.42 Aligned_cols=114 Identities=27% Similarity=0.354 Sum_probs=76.9
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCCC-CCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCC
Q 005302 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLYE-PTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQD 603 (703)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~ 603 (703)
.++++.+.|.||+||||||+++.+++.++ +.+|.|..-..|+.-. +....+.+.|.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q~------------------- 175 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQR------------------- 175 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEcc-------------------
Confidence 46799999999999999999999999776 4467777654443211 00111111111
Q ss_pred CCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 604 IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 604 ~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
.+|....+ --=++++||-.+|+++++||++ |.++.....++...-
T Consensus 176 ----------------------------evg~~~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa~tG 220 (343)
T TIGR01420 176 ----------------------------EVGLDTLS----FANALRAALREDPDVILIGEMR---DLETVELALTAAETG 220 (343)
T ss_pred ----------------------------ccCCCCcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHHHHcC
Confidence 11111011 1224788999999999999997 999988766676777
Q ss_pred CcEEEEecchhHH
Q 005302 684 GLLVKSLHFLSLY 696 (703)
Q Consensus 684 ~~~~~~~~~~~~~ 696 (703)
...+-++|-.+..
T Consensus 221 h~v~~T~Ha~~~~ 233 (343)
T TIGR01420 221 HLVFGTLHTNSAA 233 (343)
T ss_pred CcEEEEEcCCCHH
Confidence 7789999986654
No 467
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.30 E-value=1.2e-06 Score=88.66 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=49.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccc---cH--HHHhccCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRM---DI--SSNISYGC 600 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~g---TI--~eNI~~g~ 600 (703)
+++..|+|+|+||||||||++.|.+.+. ...+++++||++.++. +. +.++.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------------------~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~ 62 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------------------DESIAVIPQDSYYKDQSHLSFEERVKTNYDH 62 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---------------------CCceEEEeCCccccCcccCCHHHhcccCccC
Confidence 4788999999999999999999999871 2458888999887765 23 33455554
Q ss_pred CCCCCHHHHHHHHHH
Q 005302 601 TQDIKQQDIEWAAKQ 615 (703)
Q Consensus 601 ~~~~~~e~i~~aa~~ 615 (703)
+...+.+.+.+.++.
T Consensus 63 ~~~~~~~~l~~~l~~ 77 (209)
T PRK05480 63 PDAFDHDLLIEHLKA 77 (209)
T ss_pred cccccHHHHHHHHHH
Confidence 433455666555444
No 468
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.30 E-value=3.5e-07 Score=86.74 Aligned_cols=72 Identities=29% Similarity=0.451 Sum_probs=57.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC-------------CcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhc
Q 005302 531 VAIAGLSGSGKSTLVNLLLRLYEP-------------TNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNIS 597 (703)
Q Consensus 531 vAIVG~SGsGKSTLlkLLlgly~p-------------~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~ 597 (703)
++|+||||||||||++.|++.+++ ..|+ +||++..-++.+.+++. +.|+.++..++..+| .
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~-~ 75 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGN-Y 75 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCE-E
Confidence 789999999999999999999764 4555 58999888888888864 568888999999988 5
Q ss_pred cCCCCCCCHHHHHHH
Q 005302 598 YGCTQDIKQQDIEWA 612 (703)
Q Consensus 598 ~g~~~~~~~e~i~~a 612 (703)
+|.+ .+.+.++
T Consensus 76 yg~~----~~~i~~~ 86 (137)
T cd00071 76 YGTS----KAAVEEA 86 (137)
T ss_pred ecCc----HHHHHHH
Confidence 7643 4445443
No 469
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.27 E-value=1.9e-06 Score=95.95 Aligned_cols=99 Identities=20% Similarity=0.260 Sum_probs=72.4
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC--------hHHhhcceEEEccCCc
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD--------IKWLRGRIGFVGQEPK 586 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~--------~~~lR~~I~~V~Qd~~ 586 (703)
..+++++ +++.+||+++|+|+||+|||||++.|++..+|+.|.|...|+.-++.. .+.+++.+.+|.|.+
T Consensus 125 i~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd- 202 (413)
T TIGR03497 125 IKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSD- 202 (413)
T ss_pred ceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCC-
Confidence 5689999 999999999999999999999999999999999999999998776532 122333444444432
Q ss_pred cccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCccccc
Q 005302 587 LFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLV 633 (703)
Q Consensus 587 LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~v 633 (703)
+...+++..+--...+.|+... +|+|.++
T Consensus 203 ----------------~~~~~r~~~~~~a~tiAEyfr~--~G~~Vll 231 (413)
T TIGR03497 203 ----------------QPALMRLKAAFTATAIAEYFRD--QGKDVLL 231 (413)
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHHHH--CCCCEEE
Confidence 2345666655555556677664 3777654
No 470
>PRK10869 recombination and repair protein; Provisional
Probab=98.26 E-value=1e-06 Score=101.92 Aligned_cols=57 Identities=23% Similarity=0.338 Sum_probs=48.7
Q ss_pred CCChHHHHHHHHHHHhcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc---EEEEecch
Q 005302 637 LLSGGQKQRIAIARAILR----DPTILILDEATSALDAESEHNIKVATLSNGL---LVKSLHFL 693 (703)
Q Consensus 637 ~LSGGQkQRIaLARAL~r----~p~ILILDEaTSaLD~~tE~~I~~al~~~~~---~~~~~~~~ 693 (703)
.+||||+||++|||++.. +|+++||||||++||..+...+.+.++++.. ++-.-|-.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~ 493 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLP 493 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 599999999999999996 6899999999999999999999999988743 33344543
No 471
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.24 E-value=1.1e-06 Score=102.10 Aligned_cols=48 Identities=25% Similarity=0.363 Sum_probs=44.5
Q ss_pred CCChHHHHHHHHHHHhcCC----CCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 637 LLSGGQKQRIAIARAILRD----PTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 637 ~LSGGQkQRIaLARAL~r~----p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
.+||||+||++||||++.. |++|||||||++||+.+...+.+.|+++.
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~ 491 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS 491 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh
Confidence 5999999999999999975 69999999999999999999999988764
No 472
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.23 E-value=2.9e-06 Score=99.43 Aligned_cols=110 Identities=19% Similarity=0.189 Sum_probs=68.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc--------eEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhcc
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG--------QILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISY 598 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG--------~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~ 598 (703)
..+.+.|+||+||||||+++++.++..+.+| -|.+||.++. .+...+. |-.+
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i~-------------------~~ll 233 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREVT-------------------NPLL 233 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHHh-------------------HHhc
Confidence 3467999999999999999999999876554 4888887763 2322221 2222
Q ss_pred CCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHH
Q 005302 599 GCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD-DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIK 677 (703)
Q Consensus 599 g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe-~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~ 677 (703)
+...+...+...+.++..++.+. .+ |. ..+||| +|+||| +..||......+.
T Consensus 234 g~~~~~~~~~a~~~l~~~gl~~~-------~~---g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll 286 (615)
T TIGR02903 234 GSVHDPIYQGARRDLAETGVPEP-------KT---GLVTDAHGG----------------VLFIDE-IGELDPLLQNKLL 286 (615)
T ss_pred CCccHHHHHHHHHHHHHcCCCch-------hc---CchhhcCCC----------------eEEEec-cccCCHHHHHHHH
Confidence 21101001111122222222111 11 22 367888 999999 7999999999999
Q ss_pred HHHHhC
Q 005302 678 VATLSN 683 (703)
Q Consensus 678 ~al~~~ 683 (703)
+.+++-
T Consensus 287 ~~Le~~ 292 (615)
T TIGR02903 287 KVLEDK 292 (615)
T ss_pred HHHhhC
Confidence 999863
No 473
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.20 E-value=1.1e-06 Score=98.14 Aligned_cols=102 Identities=18% Similarity=0.183 Sum_probs=73.2
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CcceEEE---CCEeCCCCChHHhh---cceEEE-----c
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-TNGQILI---DGFPIKEVDIKWLR---GRIGFV-----G 582 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-~sG~I~i---dG~di~~i~~~~lR---~~I~~V-----~ 582 (703)
..+++++ ++|.+||+++|+|+||||||||++.|+|+.++ +.|.|.+ +|.++.++..+.++ .+.++| +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 3578887 99999999999999999999999999999844 4467776 45777666655554 345666 8
Q ss_pred cCCc------cccccHHHHhccCCCCC-----CCHHHHHHHHHHhch
Q 005302 583 QEPK------LFRMDISSNISYGCTQD-----IKQQDIEWAAKQAYA 618 (703)
Q Consensus 583 Qd~~------LF~gTI~eNI~~g~~~~-----~~~e~i~~aa~~A~l 618 (703)
|+|. ....+|+|.++.-.. + -+..+..++.+..++
T Consensus 231 q~p~~rlnp~~va~~IAE~~r~~g~-~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 231 QSSQLRLNAAYVGTAIAEYFRDQGK-TVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CCHHHHhhHHHHHHHHHHHHHHcCC-CcchhhhHHHHHHHHHHHhCc
Confidence 9763 345568888764312 2 134666677777776
No 474
>PRK15494 era GTPase Era; Provisional
Probab=98.20 E-value=9.4e-07 Score=96.35 Aligned_cols=57 Identities=25% Similarity=0.340 Sum_probs=51.4
Q ss_pred cCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCc-------EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 494 QRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGE-------VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 494 ~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge-------~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+...|.+++++++|+|++ .+++++++++++++|+ +|+|+|++|+|||||++-|.|-.
T Consensus 13 ~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 13 EEFKGDTEALAAAVREDA--STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred hhhCCccccccccccCCC--CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 346789999999999994 3789999999999999 99999999999999999998864
No 475
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.19 E-value=3.1e-06 Score=83.46 Aligned_cols=47 Identities=9% Similarity=0.074 Sum_probs=34.8
Q ss_pred CCCChHHHH------HHHHHHHhcCCCCEEEEeCCCCCCC---HHHHHHHHHHHHh
Q 005302 636 DLLSGGQKQ------RIAIARAILRDPTILILDEATSALD---AESEHNIKVATLS 682 (703)
Q Consensus 636 ~~LSGGQkQ------RIaLARAL~r~p~ILILDEaTSaLD---~~tE~~I~~al~~ 682 (703)
..+|+||+| ....+.+.-.+|+++++||+|+.+| ......+.+.++.
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~ 125 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFA 125 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHH
Confidence 478999999 4444444567999999999999999 6656655555443
No 476
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.17 E-value=3.1e-06 Score=87.24 Aligned_cols=105 Identities=15% Similarity=0.245 Sum_probs=63.6
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhc-CCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCC
Q 005302 524 SVNPGEVVAIAGLSGSGKSTLVNLLLR-LYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQ 602 (703)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlg-ly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~ 602 (703)
=+++|+.+.|.|++||||||+..-++- ... +.+. +.|+..+... ..+.+|.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~-------------------~~y~~~e~~~--~~~~~~~------ 72 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKK-------------------VYVITTENTS--KSYLKQM------ 72 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCE-------------------EEEEEcCCCH--HHHHHHH------
Confidence 489999999999999999999988752 222 2222 3444332110 1122222
Q ss_pred CCCHHHHHHHHHHhch--HHHHHcCCCCcccc----cCC-CCCChHHHHHHHHHHHhcC--CCCEEEEeCCCCCCCH
Q 005302 603 DIKQQDIEWAAKQAYA--HDFIMSLPSGYETL----VDD-DLLSGGQKQRIAIARAILR--DPTILILDEATSALDA 670 (703)
Q Consensus 603 ~~~~e~i~~aa~~A~l--~d~I~~LP~GydT~----vGe-~~LSGGQkQRIaLARAL~r--~p~ILILDEaTSaLD~ 670 (703)
+..+. .+++. .|+-.. ..+ ...|.++++.+..++..++ +|+++++||+|+.+|.
T Consensus 73 -----------~~~g~~~~~~~~---~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~ 135 (234)
T PRK06067 73 -----------ESVKIDISDFFL---WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATY 135 (234)
T ss_pred -----------HHCCCChhHHHh---CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhc
Confidence 22221 11111 111111 111 3457889999999999998 9999999999965443
No 477
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.15 E-value=3.3e-06 Score=91.07 Aligned_cols=105 Identities=20% Similarity=0.182 Sum_probs=69.7
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC---hHHhhcceEEEccCCcccccc
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD---IKWLRGRIGFVGQEPKLFRMD 591 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~---~~~lR~~I~~V~Qd~~LF~gT 591 (703)
..+++++ +++.+||+++|+|+||+|||||++.|+|+..|+.|.+..-|.+-+++. .+.... -+.+...++..|
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ev~~~~~~~~~~---~~l~rtvvv~~t 132 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGREVREFIEKDLGE---EGLKRSVVVVAT 132 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCccHHHHHHHHHhc---CccceEEEEEcC
Confidence 5799999 999999999999999999999999999999999998888665444332 222111 001111111111
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccC
Q 005302 592 ISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVD 634 (703)
Q Consensus 592 I~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vG 634 (703)
.++...+++..+--...+.|+... +|.|..+=
T Consensus 133 ---------~d~~~~~r~~~~~~a~~~AEyfr~--~g~~Vll~ 164 (326)
T cd01136 133 ---------SDESPLLRVKAAYTATAIAEYFRD--QGKDVLLL 164 (326)
T ss_pred ---------CCCCHHHHHHHHHHHHHHHHHHHH--cCCCeEEE
Confidence 113345666665555566777764 58887664
No 478
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.14 E-value=1.6e-06 Score=87.12 Aligned_cols=56 Identities=32% Similarity=0.454 Sum_probs=45.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-cceEEECCEeCCCCChHHhhcceEEEccCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPT-NGQILIDGFPIKEVDIKWLRGRIGFVGQEP 585 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~-sG~I~idG~di~~i~~~~lR~~I~~V~Qd~ 585 (703)
++|+.++|+|+|||||||+++.|.+.+.+. .|.+.+||.+++. .+...++|++|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~----~~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH----GLCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh----hhhhcCCcCcccH
Confidence 678999999999999999999999977554 4689999988763 2333578888875
No 479
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.14 E-value=7e-06 Score=99.29 Aligned_cols=43 Identities=23% Similarity=0.203 Sum_probs=32.8
Q ss_pred hcCCCCEEEEeCCCCCC-CHHHHHHHHHHHHhCCc----EEEEecchh
Q 005302 652 ILRDPTILILDEATSAL-DAESEHNIKVATLSNGL----LVKSLHFLS 694 (703)
Q Consensus 652 L~r~p~ILILDEaTSaL-D~~tE~~I~~al~~~~~----~~~~~~~~~ 694 (703)
+..+|+++++|||++.| |+...+.+.+.+++..+ ++-.-|-+.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~ 696 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSIS 696 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 46899999999999999 68988999888875533 344445443
No 480
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.10 E-value=3.9e-06 Score=93.63 Aligned_cols=100 Identities=19% Similarity=0.187 Sum_probs=73.7
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc---ceEEECCEeCCCCC---hHHhhcceEEEccCCcccc
Q 005302 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN---GQILIDGFPIKEVD---IKWLRGRIGFVGQEPKLFR 589 (703)
Q Consensus 516 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~s---G~I~idG~di~~i~---~~~lR~~I~~V~Qd~~LF~ 589 (703)
.+++.+ ++|.+||+++|+|+||+|||||++.|+|+.+|+. |.|-.+|.++.++- ...-....++|.|+..
T Consensus 164 raID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a--- 239 (455)
T PRK07960 164 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA--- 239 (455)
T ss_pred eeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC---
Confidence 355555 9999999999999999999999999999999986 99999999986531 1112245677777542
Q ss_pred ccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCccccc
Q 005302 590 MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLV 633 (703)
Q Consensus 590 gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~v 633 (703)
+ +...+++..+.-...+.|+..+ +|+|-++
T Consensus 240 -----------d-~~~~~r~~~~~~a~tiAEyfrd--~G~~Vll 269 (455)
T PRK07960 240 -----------D-VSPLLRMQGAAYATRIAEDFRD--RGQHVLL 269 (455)
T ss_pred -----------C-CCHHHHHHHHHHHHHHHHHHHH--cCCCeEE
Confidence 1 3445666666555667777775 4777655
No 481
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.07 E-value=2.3e-06 Score=93.93 Aligned_cols=49 Identities=33% Similarity=0.400 Sum_probs=41.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCC---cceEEECCEeCCCCChHHhhcc
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLYEPT---NGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly~p~---sG~I~idG~di~~i~~~~lR~~ 577 (703)
=.|||.|+||||||||++.|.++.++. .|.|.+||..+..-+...+++.
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~ 264 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRER 264 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhh
Confidence 358999999999999999999999876 7899999998865555555554
No 482
>PRK01156 chromosome segregation protein; Provisional
Probab=98.05 E-value=4.8e-06 Score=102.10 Aligned_cols=46 Identities=39% Similarity=0.563 Sum_probs=41.7
Q ss_pred CCCChHHHHHHHH------HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 005302 636 DLLSGGQKQRIAI------ARAILRDPTILILDEATSALDAESEHNIKVATL 681 (703)
Q Consensus 636 ~~LSGGQkQRIaL------ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~ 681 (703)
..|||||+||++| ||+++++|++++|||||++||+.+...+.+.+.
T Consensus 800 ~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~ 851 (895)
T PRK01156 800 DSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIE 851 (895)
T ss_pred ccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHH
Confidence 4899999999975 599999999999999999999999988877765
No 483
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.05 E-value=3.7e-06 Score=95.68 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=58.4
Q ss_pred EEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC
Q 005302 502 FVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV 569 (703)
Q Consensus 502 ~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i 569 (703)
++|++..|+. ..+++++++.+..|+.++|+||+|||||||++.|.|+++|.+|++.+++..|..+
T Consensus 187 ~~d~~~v~Gq---~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~ 251 (506)
T PRK09862 187 QHDLSDVIGQ---EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSL 251 (506)
T ss_pred ccCeEEEECc---HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhh
Confidence 4588888863 4689999999999999999999999999999999999999999999998887543
No 484
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.05 E-value=8.5e-06 Score=91.45 Aligned_cols=142 Identities=22% Similarity=0.221 Sum_probs=92.6
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCh---H-----HhhcceEEEccCCc
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI---K-----WLRGRIGFVGQEPK 586 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~---~-----~lR~~I~~V~Qd~~ 586 (703)
..+++++ ++|.+||+++|+|+||+|||||++.|+|+.+|+.|.+..-|..-+++.. + .+++.+.++.+-
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~-- 227 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATS-- 227 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECC--
Confidence 5789999 9999999999999999999999999999999999988887766555331 1 111222222221
Q ss_pred cccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCC-hHHHHHHHHHHHhcCCCCEEEEeCCC
Q 005302 587 LFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLS-GGQKQRIAIARAILRDPTILILDEAT 665 (703)
Q Consensus 587 LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LS-GGQkQRIaLARAL~r~p~ILILDEaT 665 (703)
++...++...+--...+.|+..+ +|+|-++==++++ =-|-|| -++=+ ..+|+ .+
T Consensus 228 ---------------d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslTr~A~A~R-Eisl~-~ge~P------~~ 282 (440)
T TIGR01026 228 ---------------DQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVTRFAMAQR-EIGLA-AGEPP------AT 282 (440)
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChHHHHHHHH-HHHHh-cCCCC------cc
Confidence 13345566555555556677774 5888866322332 123333 22222 23343 57
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 005302 666 SALDAESEHNIKVATLSNG 684 (703)
Q Consensus 666 SaLD~~tE~~I~~al~~~~ 684 (703)
.+.|+..-..+-+-+++.+
T Consensus 283 ~Gypp~~~~~l~~l~ERag 301 (440)
T TIGR01026 283 KGYTPSVFSTLPRLLERAG 301 (440)
T ss_pred cccChhHHHHHHHHHHHhc
Confidence 7899988888887777654
No 485
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.03 E-value=8.4e-06 Score=71.66 Aligned_cols=47 Identities=38% Similarity=0.425 Sum_probs=36.6
Q ss_pred CCCChHHHHH-------HHHHHHhcC------CCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 005302 636 DLLSGGQKQR-------IAIARAILR------DPTILILDEATSALDAESEHNIKVATLS 682 (703)
Q Consensus 636 ~~LSGGQkQR-------IaLARAL~r------~p~ILILDEaTSaLD~~tE~~I~~al~~ 682 (703)
.++||||||. .++|-.+-. .|++++||||+++||+++-+.+.+.+++
T Consensus 31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4899999964 334444444 3799999999999999999999998874
No 486
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.02 E-value=1.8e-05 Score=75.25 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=33.0
Q ss_pred CCChHHHHHHHHHHH-----hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 005302 637 LLSGGQKQRIAIARA-----ILRDPTILILDEATSALDAESEHNIKVATLS 682 (703)
Q Consensus 637 ~LSGGQkQRIaLARA-----L~r~p~ILILDEaTSaLD~~tE~~I~~al~~ 682 (703)
.+|++++++.....+ .+..|+++ |||++|.++-+++.+.|.+
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~ 168 (170)
T cd01876 122 KLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEK 168 (170)
T ss_pred cCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHH
Confidence 578998888765554 24566766 9999999999999988865
No 487
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.01 E-value=4e-06 Score=93.43 Aligned_cols=69 Identities=20% Similarity=0.262 Sum_probs=60.2
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV 569 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i 569 (703)
+.++.++++-.|..+ ..+++++ ++|.+||+++|+|+||+|||||++.|+|+.+|+.|.|.+.|..-+++
T Consensus 128 ~~~~r~~v~~~l~tG--i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRgrEv 196 (433)
T PRK07594 128 PAMVRQPITQPLMTG--IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV 196 (433)
T ss_pred CceeccCHhheeCCC--ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCchHH
Confidence 357888888888643 5799999 99999999999999999999999999999999999988888765553
No 488
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.01 E-value=5.5e-06 Score=85.31 Aligned_cols=54 Identities=30% Similarity=0.438 Sum_probs=39.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcce----EEECCEeCCCCChHHhhcceEEEccC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQ----ILIDGFPIKEVDIKWLRGRIGFVGQE 584 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~----I~idG~di~~i~~~~lR~~I~~V~Qd 584 (703)
+...++|.|+||||||||++.|.+++.+++|. |..|+... ...++...+++.+.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~----~~~~~~~~g~~~~~ 89 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHL----DNAVLDAHGLRPRK 89 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccC----CHHHHHhccccccc
Confidence 45799999999999999999999999999998 44454222 22344445665543
No 489
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.99 E-value=5e-06 Score=92.98 Aligned_cols=54 Identities=26% Similarity=0.338 Sum_probs=48.9
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV 569 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i 569 (703)
..+++++ +++.+||+++|+|+||+|||||++.|+|..+|+.|.+...|.+-+++
T Consensus 133 ~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev 186 (422)
T TIGR02546 133 VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREV 186 (422)
T ss_pred ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCH
Confidence 5689999 99999999999999999999999999999999999998866655544
No 490
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.99 E-value=3.7e-06 Score=83.38 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=33.8
Q ss_pred CCCChHHHHHHH--HHHHhcC-CCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 005302 636 DLLSGGQKQRIA--IARAILR-DPTILILDEATSALDAESEHNIKVATLS 682 (703)
Q Consensus 636 ~~LSGGQkQRIa--LARAL~r-~p~ILILDEaTSaLD~~tE~~I~~al~~ 682 (703)
..+|+||+|++. +++++-. +++++ |||++|.++-+.+.+.|.+
T Consensus 146 Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~ 191 (196)
T PRK00454 146 DKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAK 191 (196)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHH
Confidence 368999999987 7777754 34443 9999999998888888765
No 491
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.97 E-value=6.3e-06 Score=102.56 Aligned_cols=65 Identities=20% Similarity=0.119 Sum_probs=52.4
Q ss_pred CCCChHHHHHHHHHHHhcC----------CCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEE-EEecchhHHHHhh
Q 005302 636 DLLSGGQKQRIAIARAILR----------DPTILILDEATSALDAESEHNIKVATLSNG---LLV-KSLHFLSLYVLIC 700 (703)
Q Consensus 636 ~~LSGGQkQRIaLARAL~r----------~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~-~~~~~~~~~~~~~ 700 (703)
.+||||+++|++||+||.. +|++|||||||++||+++...+.+.|+++. ..| =.-|-..+---+|
T Consensus 949 ~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~ 1027 (1042)
T TIGR00618 949 ATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIP 1027 (1042)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhC
Confidence 3899999999999999985 799999999999999999999999887653 222 3347665554444
No 492
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.97 E-value=6.4e-06 Score=102.23 Aligned_cols=49 Identities=29% Similarity=0.264 Sum_probs=45.8
Q ss_pred CCCChHHHHHHHHHHHhcC--------CCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 636 DLLSGGQKQRIAIARAILR--------DPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 636 ~~LSGGQkQRIaLARAL~r--------~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
..|||||+||++|||||.. +|++||+||||++||+++-..+.+.|.++.
T Consensus 948 ~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~ 1004 (1047)
T PRK10246 948 RTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALN 1004 (1047)
T ss_pred ccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 4899999999999999995 899999999999999999999999998764
No 493
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.96 E-value=7.3e-06 Score=102.76 Aligned_cols=48 Identities=29% Similarity=0.358 Sum_probs=44.6
Q ss_pred CCChHHHHHHHHHHHh----cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 637 LLSGGQKQRIAIARAI----LRDPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 637 ~LSGGQkQRIaLARAL----~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
.||||||||++||||+ +++|+++||||||++||+.+...+.+.|..+.
T Consensus 1089 ~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~ 1140 (1179)
T TIGR02168 1089 LLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFS 1140 (1179)
T ss_pred ccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhc
Confidence 7999999999999998 58889999999999999999999999988763
No 494
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.95 E-value=1.2e-05 Score=90.10 Aligned_cols=103 Identities=19% Similarity=0.263 Sum_probs=67.3
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc---ceEEECCEeCCCCChHHhhcceEEEccCCcccccc
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN---GQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMD 591 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~s---G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gT 591 (703)
..+++++ ++|.+||+++|+|+||+|||||+++|+|+.+|+- |.|-.+|.+++++- +..+=.+.
T Consensus 156 i~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~ev~~~~-------------~~~~~~~~ 221 (451)
T PRK05688 156 IRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFI-------------EHILGEEG 221 (451)
T ss_pred eeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHhHHHHH-------------HHHhhcCC
Confidence 4689999 9999999999999999999999999999998862 33333333333211 11111223
Q ss_pred HHHHhccCCC-CCCCHHHHHHHHHHhchHHHHHcCCCCccccc
Q 005302 592 ISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLV 633 (703)
Q Consensus 592 I~eNI~~g~~-~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~v 633 (703)
+..++.+... ++...+++..+--...+.|+..+ +|+|.++
T Consensus 222 l~rsvvv~atsd~~p~~r~~a~~~a~aiAEyfrd--~G~~VLl 262 (451)
T PRK05688 222 LKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRD--KGKNVLL 262 (451)
T ss_pred ccEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH--CCCCEEE
Confidence 3333333322 13345667666666677888875 5888765
No 495
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.94 E-value=9.7e-06 Score=81.79 Aligned_cols=57 Identities=21% Similarity=0.189 Sum_probs=45.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCcc
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKL 587 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~L 587 (703)
+++|+||+|||||||++.+.+.+.+..| +.+-+.|........+....++++|+..+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 59 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERIL 59 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCcee
Confidence 6899999999999999999999988755 55555666655566666777999998765
No 496
>PRK03918 chromosome segregation protein; Provisional
Probab=97.94 E-value=9.9e-06 Score=99.14 Aligned_cols=47 Identities=32% Similarity=0.454 Sum_probs=42.2
Q ss_pred CCChHHHH------HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 637 LLSGGQKQ------RIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 637 ~LSGGQkQ------RIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
.|||||+| |+||||++.++|+++||||||++||+.+...+.+.|...
T Consensus 788 ~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~ 840 (880)
T PRK03918 788 FLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERY 840 (880)
T ss_pred hCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 79999999 666777899999999999999999999999998887653
No 497
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.94 E-value=5.4e-06 Score=89.49 Aligned_cols=62 Identities=18% Similarity=0.242 Sum_probs=50.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC------ChHHhhcceEEEccCCcc
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV------DIKWLRGRIGFVGQEPKL 587 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i------~~~~lR~~I~~V~Qd~~L 587 (703)
++|+.++++||+|+||||++.-|++.+.+..|+|.+.+.|.... ....-|..+.+++|+...
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~ 179 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGA 179 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCC
Confidence 57899999999999999999999999999999999999887543 222335668888886443
No 498
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.94 E-value=1.2e-05 Score=89.87 Aligned_cols=106 Identities=16% Similarity=0.201 Sum_probs=71.9
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHH
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (703)
..+++++ +++.+||+++|+|+||+|||||++.|++..+++.+.|...|..-++.. +.++..++-..+...++..|
T Consensus 145 i~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~-e~~~~~l~~~l~~tvvV~at--- 219 (434)
T PRK08472 145 VKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIP-EFIEKNLGGDLENTVIVVAT--- 219 (434)
T ss_pred hHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHH-HHHHHHhcCcccceEEEEEC---
Confidence 4589999 999999999999999999999999999999999999999998888754 22232232111122221111
Q ss_pred HhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCccccc
Q 005302 595 NISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLV 633 (703)
Q Consensus 595 NI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~v 633 (703)
.++...++...+-....+.|+... +|+|-.+
T Consensus 220 ------sddsp~~R~~~~~~a~~iAEyFrd--~G~~Vll 250 (434)
T PRK08472 220 ------SDDSPLMRKYGAFCAMSVAEYFKN--QGLDVLF 250 (434)
T ss_pred ------CCCCHHHhhHHHHHHHHHHHHHHH--cCCCEEE
Confidence 112334455444444556677664 4887755
No 499
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=97.93 E-value=0.00014 Score=88.60 Aligned_cols=37 Identities=30% Similarity=0.302 Sum_probs=32.3
Q ss_pred HHHHhcCCCCEEEEeCCCCCC-CHHHHHHHHHHHHhCC
Q 005302 648 IARAILRDPTILILDEATSAL-DAESEHNIKVATLSNG 684 (703)
Q Consensus 648 LARAL~r~p~ILILDEaTSaL-D~~tE~~I~~al~~~~ 684 (703)
|+|++..+|+++++|||++.| |+...+.+.+.++...
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~R 717 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLR 717 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHH
Confidence 789999999999999999999 7888888888875443
No 500
>PRK05922 type III secretion system ATPase; Validated
Probab=97.90 E-value=2e-05 Score=87.83 Aligned_cols=106 Identities=15% Similarity=0.236 Sum_probs=70.0
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHH
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (703)
..+++.+ ++|.+||+++|+|+||+|||||++.|+|..+++.|.+..-|..-++. .+.+ .|+...+ -...
T Consensus 145 Ir~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGerg~ev-~eyl-------~q~~~~~--~~~r 213 (434)
T PRK05922 145 IKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGERGREV-REYI-------EQHKEGL--AAQR 213 (434)
T ss_pred ceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCCCchH-HHHH-------HHHHhhc--cccc
Confidence 4578776 99999999999999999999999999999999999997777665554 2322 2221111 0111
Q ss_pred HhccCCC-CCCCHHHHHHHHHHhchHHHHHcCCCCccccc
Q 005302 595 NISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLV 633 (703)
Q Consensus 595 NI~~g~~-~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~v 633 (703)
.+.+... ++...+++..+--...+.|+..+ +|+|-.+
T Consensus 214 TVlv~atsd~~~~~r~~a~~~a~tiAEyfrd--~G~~VLl 251 (434)
T PRK05922 214 TIIIASPAHETAPTKVIAGRAAMTIAEYFRD--QGHRVLF 251 (434)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHH--cCCCEEE
Confidence 1222211 12344666666666667777764 4777655
Done!