Query 005302
Match_columns 703
No_of_seqs 314 out of 2768
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 21:27:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 2E-86 6.9E-91 825.6 65.2 456 227-683 142-600 (1321)
2 3qf4_A ABC transporter, ATP-bi 100.0 8.8E-84 3E-88 744.0 64.2 522 172-695 13-540 (587)
3 4a82_A Cystic fibrosis transme 100.0 8.5E-84 2.9E-88 743.2 61.2 523 170-694 2-537 (578)
4 3qf4_B Uncharacterized ABC tra 100.0 9.3E-84 3.2E-88 745.5 60.2 526 166-695 21-552 (598)
5 3b5x_A Lipid A export ATP-bind 100.0 6.6E-82 2.2E-86 728.2 73.2 524 168-695 11-541 (582)
6 2yl4_A ATP-binding cassette SU 100.0 7.9E-82 2.7E-86 729.3 71.4 527 169-695 6-544 (595)
7 3b60_A Lipid A export ATP-bind 100.0 9E-82 3.1E-86 727.1 68.1 524 168-695 11-541 (582)
8 4f4c_A Multidrug resistance pr 100.0 1.3E-83 4.5E-88 800.3 50.6 514 171-684 741-1264(1321)
9 3g5u_A MCG1178, multidrug resi 100.0 1E-79 3.4E-84 763.8 56.5 525 170-695 35-587 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 4.2E-73 1.4E-77 704.5 51.2 524 171-694 694-1231(1284)
11 3nh6_A ATP-binding cassette SU 100.0 3.9E-56 1.3E-60 472.9 19.6 231 462-695 16-251 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 8E-48 2.7E-52 398.0 24.2 196 498-695 6-206 (247)
13 2ixe_A Antigen peptide transpo 100.0 2.7E-46 9.4E-51 391.6 24.8 198 497-695 14-219 (271)
14 2ghi_A Transport protein; mult 100.0 1.3E-46 4.3E-51 391.9 21.6 196 498-695 16-216 (260)
15 1mv5_A LMRA, multidrug resista 100.0 2.9E-47 9.8E-52 392.9 15.0 193 500-695 2-200 (243)
16 3gd7_A Fusion complex of cysti 100.0 7.8E-45 2.7E-49 397.7 20.3 185 496-684 16-202 (390)
17 2pze_A Cystic fibrosis transme 100.0 2.6E-43 9E-48 360.2 21.1 182 498-695 5-192 (229)
18 2cbz_A Multidrug resistance-as 100.0 3.5E-43 1.2E-47 361.1 18.2 181 499-695 3-191 (237)
19 3tif_A Uncharacterized ABC tra 100.0 3.9E-43 1.3E-47 360.3 15.4 187 500-694 2-207 (235)
20 1ji0_A ABC transporter; ATP bi 100.0 7.7E-42 2.6E-46 351.8 20.9 190 499-697 6-203 (240)
21 3tui_C Methionine import ATP-b 100.0 4.5E-42 1.5E-46 371.6 19.4 194 498-700 23-231 (366)
22 3gfo_A Cobalt import ATP-bindi 100.0 2.4E-42 8.4E-47 362.1 14.9 186 499-695 7-206 (275)
23 2pcj_A ABC transporter, lipopr 100.0 9.3E-42 3.2E-46 347.6 15.9 185 499-695 4-202 (224)
24 2olj_A Amino acid ABC transpor 100.0 2.1E-41 7.1E-46 352.9 17.9 190 499-700 24-226 (263)
25 2yz2_A Putative ABC transporte 100.0 3.9E-41 1.3E-45 351.7 19.4 184 500-695 3-200 (266)
26 4g1u_C Hemin import ATP-bindin 100.0 3.1E-41 1E-45 352.4 18.6 190 499-700 11-215 (266)
27 1vpl_A ABC transporter, ATP-bi 100.0 3E-41 1E-45 350.4 18.0 187 497-696 13-209 (256)
28 1g6h_A High-affinity branched- 100.0 4.4E-41 1.5E-45 349.6 16.7 187 499-695 7-215 (257)
29 1b0u_A Histidine permease; ABC 100.0 6.8E-41 2.3E-45 349.1 18.2 190 499-700 6-220 (262)
30 2ihy_A ABC transporter, ATP-bi 100.0 4E-41 1.4E-45 353.8 16.3 184 499-694 21-224 (279)
31 1sgw_A Putative ABC transporte 100.0 4.4E-41 1.5E-45 340.1 16.0 176 498-694 9-194 (214)
32 2bbs_A Cystic fibrosis transme 100.0 1.2E-40 4.2E-45 351.7 19.2 199 473-695 17-221 (290)
33 3fvq_A Fe(3+) IONS import ATP- 100.0 7.8E-41 2.7E-45 361.6 17.5 185 499-695 4-201 (359)
34 3rlf_A Maltose/maltodextrin im 100.0 1.4E-40 4.8E-45 361.9 16.7 183 499-695 3-196 (381)
35 2yyz_A Sugar ABC transporter, 100.0 4.3E-40 1.5E-44 356.6 19.1 183 499-695 3-196 (359)
36 1z47_A CYSA, putative ABC-tran 100.0 3.4E-40 1.2E-44 356.6 16.8 186 498-696 13-209 (355)
37 2onk_A Molybdate/tungstate ABC 100.0 6.2E-40 2.1E-44 337.5 17.3 180 500-697 2-191 (240)
38 2qi9_C Vitamin B12 import ATP- 100.0 7.1E-40 2.4E-44 338.8 17.8 180 500-696 5-196 (249)
39 1oxx_K GLCV, glucose, ABC tran 100.0 3.1E-40 1.1E-44 357.5 15.2 186 499-696 3-204 (353)
40 2it1_A 362AA long hypothetical 100.0 5.3E-40 1.8E-44 356.2 17.0 183 499-695 3-196 (362)
41 3d31_A Sulfate/molybdate ABC t 100.0 5E-40 1.7E-44 354.8 16.6 181 500-695 2-190 (348)
42 2d2e_A SUFC protein; ABC-ATPas 100.0 1.9E-40 6.4E-45 343.4 12.4 184 500-695 4-205 (250)
43 1v43_A Sugar-binding transport 100.0 1.7E-39 5.8E-44 353.4 20.2 184 499-696 11-205 (372)
44 1g29_1 MALK, maltose transport 100.0 1.2E-39 4.3E-44 354.9 15.8 183 499-695 3-202 (372)
45 2pjz_A Hypothetical protein ST 100.0 2.3E-39 7.8E-44 337.5 14.9 179 500-695 2-187 (263)
46 2nq2_C Hypothetical ABC transp 100.0 3.8E-39 1.3E-43 334.2 16.3 178 499-700 4-196 (253)
47 2zu0_C Probable ATP-dependent 100.0 1.6E-38 5.5E-43 332.0 20.3 183 499-695 20-226 (267)
48 2v9p_A Replication protein E1; 100.0 1.3E-36 4.3E-41 322.4 -13.0 199 428-677 33-233 (305)
49 3ozx_A RNAse L inhibitor; ATP 100.0 5.7E-31 1.9E-35 299.9 14.2 175 499-700 269-453 (538)
50 2iw3_A Elongation factor 3A; a 100.0 7.2E-31 2.5E-35 313.2 14.5 177 499-695 671-960 (986)
51 3bk7_A ABC transporter ATP-bin 100.0 1.2E-30 4E-35 301.0 12.9 176 499-700 357-539 (607)
52 1yqt_A RNAse L inhibitor; ATP- 100.0 1E-30 3.6E-35 298.1 11.9 174 499-700 287-469 (538)
53 3bk7_A ABC transporter ATP-bin 100.0 7.2E-31 2.5E-35 302.8 8.6 182 499-696 83-291 (607)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 1.1E-30 3.9E-35 297.8 8.1 181 500-696 21-221 (538)
55 3j16_B RLI1P; ribosome recycli 99.9 3.4E-28 1.2E-32 280.2 14.3 171 503-697 350-532 (608)
56 2iw3_A Elongation factor 3A; a 99.9 1.1E-26 3.6E-31 277.4 23.5 171 499-697 435-609 (986)
57 3j16_B RLI1P; ribosome recycli 99.9 3.3E-28 1.1E-32 280.3 10.1 180 504-697 82-285 (608)
58 3ozx_A RNAse L inhibitor; ATP 99.9 2.2E-28 7.6E-33 278.5 5.7 178 503-697 3-201 (538)
59 3ux8_A Excinuclease ABC, A sub 99.9 1.6E-27 5.4E-32 279.1 9.8 172 515-695 31-266 (670)
60 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.7E-29 5.9E-34 282.4 -15.2 165 499-694 118-299 (460)
61 3ux8_A Excinuclease ABC, A sub 99.9 1.1E-26 3.7E-31 272.0 6.9 169 515-695 335-608 (670)
62 1z6g_A Guanylate kinase; struc 99.9 5.9E-28 2E-32 244.4 -11.4 146 515-682 10-172 (218)
63 4aby_A DNA repair protein RECN 99.9 8.6E-25 2.9E-29 241.0 12.8 177 516-694 49-357 (415)
64 3b85_A Phosphate starvation-in 99.9 1.3E-26 4.5E-31 233.2 -4.6 143 515-694 13-159 (208)
65 3pih_A Uvrabc system protein A 99.9 2.1E-24 7.1E-29 257.4 11.8 179 498-695 588-870 (916)
66 3aez_A Pantothenate kinase; tr 99.9 9E-27 3.1E-31 248.3 -11.6 165 469-669 16-208 (312)
67 2f1r_A Molybdopterin-guanine d 99.9 2.3E-26 7.8E-31 224.5 -8.0 111 529-659 3-125 (171)
68 2vf7_A UVRA2, excinuclease ABC 99.9 1.1E-23 3.8E-28 249.3 12.1 179 498-695 501-795 (842)
69 2pt7_A CAG-ALFA; ATPase, prote 99.9 2.3E-26 7.9E-31 247.1 -10.0 191 434-695 75-277 (330)
70 1e69_A Chromosome segregation 99.9 2.1E-23 7E-28 223.2 10.8 172 520-693 17-282 (322)
71 1tq4_A IIGP1, interferon-induc 99.9 2.1E-25 7.2E-30 245.6 -6.7 145 515-683 36-212 (413)
72 2r6f_A Excinuclease ABC subuni 99.9 1.5E-23 5.1E-28 248.7 7.7 177 499-695 629-910 (972)
73 2ygr_A Uvrabc system protein A 99.9 5E-23 1.7E-27 245.0 8.5 178 498-695 646-928 (993)
74 4gp7_A Metallophosphoesterase; 99.9 5.3E-24 1.8E-28 207.1 -0.7 138 520-695 1-161 (171)
75 1ye8_A Protein THEP1, hypothet 99.9 1.5E-23 5.2E-28 205.7 2.3 127 530-691 2-138 (178)
76 2gza_A Type IV secretion syste 99.9 4.1E-26 1.4E-30 248.1 -23.0 224 421-652 50-302 (361)
77 3sop_A Neuronal-specific septi 99.8 3.1E-23 1.1E-27 216.7 -3.0 138 530-687 4-144 (270)
78 1lw7_A Transcriptional regulat 99.8 6.2E-23 2.1E-27 223.2 -7.7 146 517-665 157-329 (365)
79 2eyu_A Twitching motility prot 99.8 3.2E-23 1.1E-27 215.6 -11.2 157 516-682 15-226 (261)
80 2ewv_A Twitching motility prot 99.8 5.7E-23 1.9E-27 224.2 -11.6 158 516-683 126-338 (372)
81 3b9q_A Chloroplast SRP recepto 99.8 1.2E-21 4E-26 207.9 -2.7 137 519-674 91-239 (302)
82 2dpy_A FLII, flagellum-specifi 99.8 5.8E-21 2E-25 212.3 -1.8 154 498-685 130-296 (438)
83 1lvg_A Guanylate kinase, GMP k 99.8 1.4E-22 4.8E-27 201.8 -14.0 138 525-683 1-152 (198)
84 2og2_A Putative signal recogni 99.8 6.9E-21 2.3E-25 206.2 -2.2 137 519-674 148-296 (359)
85 1pui_A ENGB, probable GTP-bind 99.8 1.4E-20 4.9E-25 186.7 -3.1 165 500-683 4-196 (210)
86 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 3.4E-18 1.1E-22 186.1 14.5 59 637-695 279-347 (365)
87 1odf_A YGR205W, hypothetical 3 99.7 9.9E-21 3.4E-25 199.7 -7.1 129 526-672 29-169 (290)
88 3asz_A Uridine kinase; cytidin 99.7 9.5E-21 3.3E-25 189.1 -7.7 128 525-683 3-146 (211)
89 2i3b_A HCR-ntpase, human cance 99.7 8.3E-20 2.8E-24 180.8 -1.3 131 528-687 1-139 (189)
90 2jeo_A Uridine-cytidine kinase 99.7 1E-19 3.6E-24 186.7 -2.8 132 514-671 11-149 (245)
91 2obl_A ESCN; ATPase, hydrolase 99.7 1.2E-17 4.3E-22 180.2 5.3 155 498-684 44-208 (347)
92 2o5v_A DNA replication and rep 99.7 1E-16 3.6E-21 173.6 11.7 48 637-684 265-321 (359)
93 1znw_A Guanylate kinase, GMP k 99.7 9.9E-19 3.4E-23 174.8 -5.0 156 515-696 9-191 (207)
94 2qnr_A Septin-2, protein NEDD5 99.7 7.8E-18 2.7E-22 178.4 -0.5 142 503-673 2-146 (301)
95 2qag_C Septin-7; cell cycle, c 99.6 5.8E-18 2E-22 186.9 -2.2 152 498-682 10-166 (418)
96 1ewq_A DNA mismatch repair pro 99.6 1.1E-16 3.8E-21 188.5 7.9 142 497-695 548-700 (765)
97 1rj9_A FTSY, signal recognitio 99.6 1.1E-16 3.7E-21 169.8 6.5 129 527-672 101-238 (304)
98 2o8b_B DNA mismatch repair pro 99.6 2.8E-16 9.5E-21 190.4 10.7 152 498-700 749-919 (1022)
99 1cr0_A DNA primase/helicase; R 99.6 6.7E-17 2.3E-21 170.1 2.4 151 516-683 23-182 (296)
100 3c8u_A Fructokinase; YP_612366 99.6 6.9E-19 2.4E-23 176.0 -12.2 134 525-682 19-168 (208)
101 3szr_A Interferon-induced GTP- 99.6 1E-17 3.4E-22 193.8 -5.9 149 499-682 10-179 (608)
102 1pzn_A RAD51, DNA repair and r 99.6 8.1E-17 2.8E-21 174.1 1.1 115 517-672 119-248 (349)
103 2qag_B Septin-6, protein NEDD5 99.6 3.5E-16 1.2E-20 172.3 5.1 165 499-682 16-203 (427)
104 1tf7_A KAIC; homohexamer, hexa 99.6 1.5E-17 5.3E-22 189.2 -8.0 155 508-694 20-186 (525)
105 2vf7_A UVRA2, excinuclease ABC 99.6 1.3E-15 4.5E-20 180.5 7.7 59 636-694 378-442 (842)
106 3jvv_A Twitching mobility prot 99.6 2.3E-15 7.9E-20 163.0 9.0 135 503-696 92-234 (356)
107 1tf7_A KAIC; homohexamer, hexa 99.5 3.6E-16 1.2E-20 177.9 -0.5 138 500-682 258-402 (525)
108 1zp6_A Hypothetical protein AT 99.5 1.1E-16 3.9E-21 156.6 -4.0 137 524-683 5-147 (191)
109 2qm8_A GTPase/ATPase; G protei 99.5 8.5E-18 2.9E-22 181.0 -13.8 177 500-683 30-258 (337)
110 3qkt_A DNA double-strand break 99.5 4.1E-14 1.4E-18 152.2 14.2 57 637-693 248-314 (339)
111 4ad8_A DNA repair protein RECN 99.5 8.6E-15 2.9E-19 166.3 8.7 59 637-695 396-460 (517)
112 1w1w_A Structural maintenance 99.5 5.5E-15 1.9E-19 164.0 5.5 48 637-684 333-384 (430)
113 4a74_A DNA repair and recombin 99.5 2.2E-15 7.5E-20 151.3 1.7 107 524-671 21-141 (231)
114 1nij_A Hypothetical protein YJ 99.5 1.9E-16 6.6E-21 169.0 -7.0 137 529-683 5-176 (318)
115 3thx_A DNA mismatch repair pro 99.5 4.8E-13 1.6E-17 160.5 17.9 141 498-696 630-788 (934)
116 1p9r_A General secretion pathw 99.5 1.1E-16 3.9E-21 176.7 -12.7 130 516-660 157-314 (418)
117 1htw_A HI0065; nucleotide-bind 99.5 3.3E-15 1.1E-19 143.6 -2.0 87 503-598 11-97 (158)
118 2rcn_A Probable GTPase ENGC; Y 99.4 3.6E-15 1.2E-19 161.1 -2.7 121 516-653 204-329 (358)
119 2bbw_A Adenylate kinase 4, AK4 99.4 1.7E-15 5.9E-20 155.1 -5.5 135 527-683 26-196 (246)
120 1nlf_A Regulatory protein REPA 99.4 1.7E-13 5.8E-18 143.0 8.0 133 524-683 26-166 (279)
121 2ehv_A Hypothetical protein PH 99.4 9.4E-15 3.2E-19 148.5 -3.2 165 500-694 7-183 (251)
122 3thx_B DNA mismatch repair pro 99.4 1.2E-13 4.1E-18 165.2 5.3 149 498-695 639-798 (918)
123 2yhs_A FTSY, cell division pro 99.4 1.8E-14 6.1E-19 160.8 -2.2 129 519-672 284-429 (503)
124 1s96_A Guanylate kinase, GMP k 99.4 5E-14 1.7E-18 142.5 1.0 111 522-681 10-128 (219)
125 3pih_A Uvrabc system protein A 99.4 1.2E-13 4E-18 165.1 3.0 132 542-694 382-527 (916)
126 2w0m_A SSO2452; RECA, SSPF, un 99.3 1E-13 3.5E-18 138.8 0.6 137 515-683 9-153 (235)
127 2cvh_A DNA repair and recombin 99.3 5.7E-13 1.9E-17 132.7 5.3 113 515-672 6-122 (220)
128 2x8a_A Nuclear valosin-contain 99.3 4.5E-15 1.6E-19 155.1 -11.2 144 515-682 33-192 (274)
129 2yv5_A YJEQ protein; hydrolase 99.3 1.7E-13 5.7E-18 145.2 -0.1 116 523-650 160-300 (302)
130 1f2t_B RAD50 ABC-ATPase; DNA d 99.3 2.7E-12 9.2E-17 121.9 6.7 66 628-693 41-123 (148)
131 2oap_1 GSPE-2, type II secreti 99.3 1.6E-13 5.5E-18 155.2 -3.7 150 515-680 247-431 (511)
132 1cke_A CK, MSSA, protein (cyti 99.3 6.7E-14 2.3E-18 140.6 -6.6 127 527-666 4-151 (227)
133 3e70_C DPA, signal recognition 99.2 5.1E-12 1.8E-16 135.2 7.1 127 524-672 125-259 (328)
134 1sxj_E Activator 1 40 kDa subu 99.2 2.4E-12 8.1E-17 138.0 4.5 125 529-685 37-163 (354)
135 1sq5_A Pantothenate kinase; P- 99.2 7.3E-14 2.5E-18 148.3 -8.2 139 496-669 34-198 (308)
136 1n0w_A DNA repair protein RAD5 99.2 4.3E-12 1.5E-16 128.3 5.0 108 524-671 20-135 (243)
137 1u0l_A Probable GTPase ENGC; p 99.2 3E-12 1E-16 135.4 2.6 103 523-626 164-289 (301)
138 4e22_A Cytidylate kinase; P-lo 99.2 1.4E-12 4.8E-17 134.3 -1.2 99 516-625 18-134 (252)
139 1wb9_A DNA mismatch repair pro 99.2 1.7E-11 5.9E-16 145.2 7.9 145 498-695 576-732 (800)
140 3kta_B Chromosome segregation 99.2 1.7E-11 5.9E-16 119.3 6.3 48 636-683 63-114 (173)
141 3lnc_A Guanylate kinase, GMP k 99.2 1.4E-13 4.9E-18 139.3 -8.9 77 515-596 14-103 (231)
142 2r6f_A Excinuclease ABC subuni 99.2 1.6E-11 5.4E-16 146.2 5.6 122 551-694 431-567 (972)
143 1vma_A Cell division protein F 99.1 1.4E-11 4.8E-16 130.6 4.5 98 521-666 97-197 (306)
144 3euj_A Chromosome partition pr 99.1 1.7E-11 6E-16 137.0 4.7 64 501-570 8-71 (483)
145 2kjq_A DNAA-related protein; s 99.1 5.2E-11 1.8E-15 113.0 6.1 44 517-566 30-75 (149)
146 1udx_A The GTP-binding protein 99.1 1E-11 3.4E-16 137.0 -0.3 132 518-673 147-284 (416)
147 1iy2_A ATP-dependent metallopr 99.1 2.3E-13 7.9E-18 141.8 -13.8 138 501-665 51-195 (278)
148 1oix_A RAS-related protein RAB 99.1 1.6E-11 5.6E-16 120.2 -0.1 142 530-682 31-188 (191)
149 1ixz_A ATP-dependent metallopr 99.0 3.1E-13 1E-17 138.7 -14.5 154 500-680 26-198 (254)
150 2ygr_A Uvrabc system protein A 99.0 4.1E-10 1.4E-14 134.6 10.1 105 586-694 465-584 (993)
151 3lda_A DNA repair protein RAD5 99.0 1.1E-10 3.7E-15 128.2 4.7 108 524-673 174-291 (400)
152 1ls1_A Signal recognition part 99.0 4E-10 1.4E-14 118.8 8.5 130 500-681 77-207 (295)
153 3tr0_A Guanylate kinase, GMP k 99.0 6.1E-11 2.1E-15 116.8 1.8 153 522-682 1-186 (205)
154 1t9h_A YLOQ, probable GTPase E 99.0 7.3E-11 2.5E-15 125.0 2.2 96 523-620 168-287 (307)
155 1in4_A RUVB, holliday junction 99.0 6.9E-13 2.4E-17 142.2 -14.0 93 501-597 20-123 (334)
156 3a00_A Guanylate kinase, GMP k 99.0 8.8E-11 3E-15 114.9 1.8 125 528-663 1-169 (186)
157 3ney_A 55 kDa erythrocyte memb 99.0 8.2E-11 2.8E-15 116.8 1.1 83 522-614 13-108 (197)
158 3ec2_A DNA replication protein 98.9 1.6E-10 5.3E-15 112.1 2.1 37 522-558 32-68 (180)
159 1qhl_A Protein (cell division 98.9 2.6E-11 8.9E-16 123.1 -3.9 75 499-584 9-91 (227)
160 1kgd_A CASK, peripheral plasma 98.9 1.2E-10 4.1E-15 113.4 0.0 81 526-614 3-94 (180)
161 2qt1_A Nicotinamide riboside k 98.9 3.2E-10 1.1E-14 112.4 2.0 103 523-664 16-118 (207)
162 2f9l_A RAB11B, member RAS onco 98.9 6.7E-10 2.3E-14 109.1 3.1 139 530-682 7-164 (199)
163 3k1j_A LON protease, ATP-depen 98.8 1E-10 3.6E-15 135.1 -4.3 157 515-682 47-227 (604)
164 2bdt_A BH3686; alpha-beta prot 98.8 1.7E-11 5.7E-16 119.9 -9.5 125 528-683 2-142 (189)
165 1svm_A Large T antigen; AAA+ f 98.8 4.8E-11 1.6E-15 129.9 -7.5 137 515-666 156-312 (377)
166 2px0_A Flagellar biosynthesis 98.8 7.5E-09 2.6E-13 109.1 8.2 102 526-679 103-204 (296)
167 2j41_A Guanylate kinase; GMP, 98.7 2.3E-09 7.9E-14 105.5 0.4 62 523-587 1-62 (207)
168 3auy_A DNA double-strand break 98.7 1.9E-08 6.6E-13 109.2 7.1 57 637-693 280-346 (371)
169 3cr8_A Sulfate adenylyltranfer 98.7 6.1E-10 2.1E-14 126.9 -5.5 149 523-684 364-541 (552)
170 2ius_A DNA translocase FTSK; n 98.6 4E-10 1.4E-14 126.9 -7.5 144 520-681 159-322 (512)
171 3uie_A Adenylyl-sulfate kinase 98.6 1.3E-09 4.4E-14 107.7 -3.7 62 503-568 3-66 (200)
172 3nwj_A ATSK2; P loop, shikimat 98.6 4.1E-09 1.4E-13 108.5 -0.6 52 499-552 17-72 (250)
173 3kta_A Chromosome segregation 98.6 8.3E-09 2.8E-13 99.8 1.5 66 519-585 18-89 (182)
174 2dy1_A Elongation factor G; tr 98.6 2.6E-08 9E-13 116.2 5.5 131 522-664 3-139 (665)
175 3tau_A Guanylate kinase, GMP k 98.5 1.2E-08 4E-13 101.7 0.5 70 526-599 6-86 (208)
176 2dhr_A FTSH; AAA+ protein, hex 98.5 2.2E-09 7.6E-14 120.8 -5.4 140 501-667 42-188 (499)
177 4eun_A Thermoresistant glucoki 98.5 9.6E-09 3.3E-13 101.4 -0.2 71 522-597 23-94 (200)
178 2qtf_A Protein HFLX, GTP-bindi 98.5 2E-08 7E-13 108.9 2.1 139 530-682 181-350 (364)
179 1zu4_A FTSY; GTPase, signal re 98.5 2.8E-08 9.5E-13 105.9 2.5 70 517-586 94-173 (320)
180 3vaa_A Shikimate kinase, SK; s 98.5 3.2E-08 1.1E-12 97.6 2.6 45 508-552 5-49 (199)
181 3t34_A Dynamin-related protein 98.4 7.4E-08 2.5E-12 104.0 2.7 49 515-566 24-74 (360)
182 3ice_A Transcription terminati 98.3 5.7E-08 2E-12 105.0 -0.2 55 496-552 130-198 (422)
183 2vp4_A Deoxynucleoside kinase; 98.3 2.2E-08 7.6E-13 101.2 -3.7 64 522-589 14-87 (230)
184 2zr9_A Protein RECA, recombina 98.2 1.1E-06 3.7E-11 94.7 6.7 40 524-563 57-97 (349)
185 2ce7_A Cell division protein F 98.2 8.9E-07 3E-11 99.1 5.7 98 515-682 38-145 (476)
186 2dr3_A UPF0273 protein PH0284; 98.2 3.6E-07 1.2E-11 92.0 1.8 48 516-563 10-59 (247)
187 3tqc_A Pantothenate kinase; bi 98.2 6.4E-07 2.2E-11 95.3 3.1 134 505-670 66-211 (321)
188 1rz3_A Hypothetical protein rb 98.1 5.7E-07 2E-11 88.8 2.2 48 524-571 18-65 (201)
189 2r6a_A DNAB helicase, replicat 98.1 1.2E-06 4.1E-11 97.6 3.3 132 516-669 191-327 (454)
190 1knq_A Gluconate kinase; ALFA/ 98.0 1.9E-06 6.5E-11 82.5 2.7 53 526-584 6-59 (175)
191 2ffh_A Protein (FFH); SRP54, s 98.0 3.2E-06 1.1E-10 93.3 4.6 144 500-672 77-228 (425)
192 2xau_A PRE-mRNA-splicing facto 98.0 4.5E-06 1.5E-10 99.0 5.8 45 637-681 190-235 (773)
193 2pez_A Bifunctional 3'-phospho 97.9 1.1E-06 3.7E-11 84.8 -0.8 42 526-568 3-46 (179)
194 4a1f_A DNAB helicase, replicat 97.8 1.5E-05 5E-10 85.4 5.9 103 517-669 35-141 (338)
195 1f6b_A SAR1; gtpases, N-termin 97.8 5.6E-06 1.9E-10 81.0 2.1 60 505-567 5-72 (198)
196 3m6a_A ATP-dependent protease 97.8 4.1E-06 1.4E-10 95.5 0.6 81 502-586 86-166 (543)
197 1ni3_A YCHF GTPase, YCHF GTP-b 97.8 1.4E-05 4.7E-10 87.3 4.5 42 524-565 16-69 (392)
198 2e87_A Hypothetical protein PH 97.7 2.5E-05 8.7E-10 84.0 6.2 109 528-682 167-276 (357)
199 3r20_A Cytidylate kinase; stru 97.7 2.3E-06 7.8E-11 87.0 -2.1 70 528-597 9-96 (233)
200 1m7g_A Adenylylsulfate kinase; 97.7 4.5E-06 1.5E-10 82.8 -0.0 45 523-567 20-66 (211)
201 1mky_A Probable GTP-binding pr 97.7 1.6E-05 5.3E-10 88.2 4.0 61 529-589 181-253 (439)
202 1uf9_A TT1252 protein; P-loop, 97.7 7.5E-06 2.6E-10 79.9 1.2 34 528-566 8-41 (203)
203 1kag_A SKI, shikimate kinase I 97.7 1.3E-05 4.5E-10 76.2 2.8 34 527-564 3-36 (173)
204 1ega_A Protein (GTP-binding pr 97.7 1.9E-05 6.5E-10 83.1 4.2 123 526-680 6-139 (301)
205 3k8u_A Putative ABC transporte 97.7 2.2E-06 7.6E-11 81.3 -2.8 49 95-147 93-143 (156)
206 3kl4_A SRP54, signal recogniti 97.7 5.5E-05 1.9E-09 83.6 7.8 41 527-567 96-136 (433)
207 2p67_A LAO/AO transport system 97.7 6.8E-06 2.3E-10 88.0 0.4 54 515-568 43-96 (341)
208 2z43_A DNA repair and recombin 97.7 1.1E-05 3.9E-10 85.7 1.8 28 524-551 103-130 (324)
209 4eaq_A DTMP kinase, thymidylat 97.6 1.4E-05 4.8E-10 80.8 1.7 45 518-563 13-60 (229)
210 2qor_A Guanylate kinase; phosp 97.6 9.1E-06 3.1E-10 80.1 -0.2 54 524-577 8-72 (204)
211 3b79_A Toxin secretion ATP-bin 97.6 5.4E-06 1.9E-10 75.6 -1.9 47 96-146 78-128 (129)
212 1m2o_B GTP-binding protein SAR 97.5 5.4E-05 1.8E-09 73.3 4.7 51 516-567 12-70 (190)
213 2jaq_A Deoxyguanosine kinase; 97.5 3.5E-06 1.2E-10 82.2 -4.0 70 530-599 2-87 (205)
214 2www_A Methylmalonic aciduria 97.5 2.5E-05 8.7E-10 83.9 1.8 43 526-568 72-114 (349)
215 2gj8_A MNME, tRNA modification 97.5 6.8E-05 2.3E-09 71.5 4.6 41 526-566 2-54 (172)
216 3b9p_A CG5977-PA, isoform A; A 97.5 0.00018 6.1E-09 74.6 7.9 32 639-670 97-128 (297)
217 3zua_A CLD, alpha-hemolysin tr 97.4 1.7E-05 5.9E-10 73.9 -0.6 49 94-147 84-135 (142)
218 1sxj_C Activator 1 40 kDa subu 97.3 8.4E-06 2.9E-10 86.9 -4.2 70 515-584 31-103 (340)
219 3bh0_A DNAB-like replicative h 97.3 6.4E-05 2.2E-09 79.6 2.5 108 516-669 56-165 (315)
220 1j8m_F SRP54, signal recogniti 97.3 4E-05 1.4E-09 80.6 0.5 62 502-569 77-139 (297)
221 3hr8_A Protein RECA; alpha and 97.3 7.7E-05 2.6E-09 80.4 2.5 57 525-584 58-115 (356)
222 3lxx_A GTPase IMAP family memb 97.3 0.0013 4.4E-08 66.1 11.3 29 530-558 31-59 (239)
223 1fnn_A CDC6P, cell division co 97.2 0.00067 2.3E-08 72.5 9.3 31 526-556 40-72 (389)
224 1y63_A LMAJ004144AAA protein; 97.2 0.00014 4.9E-09 70.3 3.3 32 520-551 2-33 (184)
225 3llm_A ATP-dependent RNA helic 97.2 0.00015 5.2E-09 72.9 3.3 124 524-684 72-207 (235)
226 1v5w_A DMC1, meiotic recombina 97.2 0.00012 4E-09 78.5 2.4 28 524-551 118-145 (343)
227 2yvu_A Probable adenylyl-sulfa 97.2 0.00011 3.8E-09 70.9 2.0 42 524-565 9-51 (186)
228 1jjv_A Dephospho-COA kinase; P 97.1 0.00017 5.7E-09 70.7 2.9 31 530-565 4-34 (206)
229 3t61_A Gluconokinase; PSI-biol 97.1 0.00013 4.4E-09 71.4 1.4 35 528-566 18-52 (202)
230 2p5t_B PEZT; postsegregational 97.1 0.00013 4.6E-09 74.4 1.5 42 524-567 28-69 (253)
231 2wji_A Ferrous iron transport 97.1 0.00047 1.6E-08 64.9 5.2 24 529-552 4-27 (165)
232 2qag_A Septin-2, protein NEDD5 97.1 5.1E-05 1.7E-09 82.0 -1.8 59 497-564 15-73 (361)
233 1lv7_A FTSH; alpha/beta domain 97.0 0.00026 8.9E-09 71.9 3.4 48 517-568 36-83 (257)
234 1ypw_A Transitional endoplasmi 97.0 6.1E-05 2.1E-09 89.7 -1.8 61 523-585 233-293 (806)
235 2wjg_A FEOB, ferrous iron tran 97.0 0.00034 1.2E-08 66.8 3.8 37 529-565 8-55 (188)
236 1np6_A Molybdopterin-guanine d 97.0 0.00023 7.8E-09 68.9 2.6 39 528-566 6-47 (174)
237 1ex7_A Guanylate kinase; subst 97.0 0.00017 5.9E-09 70.6 1.5 46 531-578 4-62 (186)
238 2ohf_A Protein OLA1, GTP-bindi 97.0 0.00029 9.9E-09 76.8 3.4 41 524-564 18-69 (396)
239 2qby_A CDC6 homolog 1, cell di 97.0 0.0003 1E-08 74.9 3.4 32 526-557 43-74 (386)
240 3uk6_A RUVB-like 2; hexameric 96.9 0.00067 2.3E-08 72.4 5.7 41 526-566 68-108 (368)
241 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00046 1.6E-08 64.8 3.8 29 520-549 16-44 (149)
242 1l8q_A Chromosomal replication 96.9 0.00053 1.8E-08 72.2 4.4 29 527-555 36-64 (324)
243 2if2_A Dephospho-COA kinase; a 96.9 0.00048 1.7E-08 67.2 3.8 22 530-551 3-24 (204)
244 1ly1_A Polynucleotide kinase; 96.9 0.0024 8.2E-08 60.4 8.4 31 529-562 3-33 (181)
245 2zej_A Dardarin, leucine-rich 96.9 0.00046 1.6E-08 66.2 3.3 26 530-555 4-29 (184)
246 3ihw_A Centg3; RAS, centaurin, 96.8 0.00097 3.3E-08 64.1 5.3 37 530-566 22-67 (184)
247 2z4s_A Chromosomal replication 96.7 0.00093 3.2E-08 74.0 4.9 25 528-552 130-154 (440)
248 4ag6_A VIRB4 ATPase, type IV s 96.7 0.00064 2.2E-08 73.8 3.5 56 505-562 11-69 (392)
249 2dby_A GTP-binding protein; GD 96.7 0.00042 1.4E-08 75.0 1.5 59 530-620 3-61 (368)
250 1qhx_A CPT, protein (chloramph 96.7 0.00092 3.1E-08 63.5 3.7 27 527-553 2-28 (178)
251 1gtv_A TMK, thymidylate kinase 96.7 0.00027 9.1E-09 69.4 -0.1 87 530-636 2-95 (214)
252 3cm0_A Adenylate kinase; ATP-b 96.6 0.00079 2.7E-08 64.5 3.0 27 526-552 2-28 (186)
253 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00035 1.2E-08 75.0 0.5 37 516-552 10-48 (359)
254 1fzq_A ADP-ribosylation factor 96.6 0.001 3.6E-08 63.5 3.4 39 528-566 16-62 (181)
255 2q6t_A DNAB replication FORK h 96.6 0.0017 6E-08 71.8 5.6 127 517-669 189-324 (444)
256 3kb2_A SPBC2 prophage-derived 96.6 0.001 3.6E-08 62.5 3.2 23 530-552 3-25 (173)
257 1ko7_A HPR kinase/phosphatase; 96.5 0.0012 4.1E-08 69.7 3.6 47 516-563 133-183 (314)
258 3h4m_A Proteasome-activating n 96.5 0.0026 8.8E-08 65.3 5.8 28 525-552 48-75 (285)
259 4dcu_A GTP-binding protein ENG 96.5 0.0021 7.4E-08 71.2 5.6 44 640-683 87-130 (456)
260 3trf_A Shikimate kinase, SK; a 96.5 0.0014 4.7E-08 62.8 3.5 26 527-552 4-29 (185)
261 1kht_A Adenylate kinase; phosp 96.5 0.0014 5E-08 62.6 3.5 26 527-552 2-27 (192)
262 1vht_A Dephospho-COA kinase; s 96.4 0.0017 5.7E-08 64.2 4.1 32 527-563 3-34 (218)
263 1q3t_A Cytidylate kinase; nucl 96.4 0.0015 5.2E-08 65.6 3.5 26 525-550 13-38 (236)
264 2v54_A DTMP kinase, thymidylat 96.4 0.0018 6.2E-08 62.8 3.8 27 526-552 2-28 (204)
265 2rhm_A Putative kinase; P-loop 96.4 0.0016 5.4E-08 62.6 3.4 27 526-552 3-29 (193)
266 1gvn_B Zeta; postsegregational 96.4 0.0017 5.7E-08 67.7 3.8 36 526-563 31-66 (287)
267 2eyu_A Twitching motility prot 96.4 0.0035 1.2E-07 64.4 6.0 48 645-695 88-135 (261)
268 3iij_A Coilin-interacting nucl 96.3 0.0012 4.2E-08 63.0 2.1 27 526-552 9-35 (180)
269 1xjc_A MOBB protein homolog; s 96.3 0.0012 4.1E-08 63.6 1.9 36 529-564 5-43 (169)
270 3lw7_A Adenylate kinase relate 96.3 0.0018 6.3E-08 60.5 3.2 19 530-548 3-21 (179)
271 3qks_A DNA double-strand break 96.3 0.0023 7.7E-08 63.2 3.8 29 520-549 16-44 (203)
272 1jal_A YCHF protein; nucleotid 96.3 0.0028 9.7E-08 68.3 4.8 36 528-563 2-48 (363)
273 1sxj_D Activator 1 41 kDa subu 96.3 0.00067 2.3E-08 71.7 -0.2 38 516-553 44-83 (353)
274 2c95_A Adenylate kinase 1; tra 96.2 0.0023 8E-08 61.5 3.6 27 526-552 7-33 (196)
275 2wwf_A Thymidilate kinase, put 96.2 0.0024 8.4E-08 62.3 3.7 28 525-552 7-34 (212)
276 3cf0_A Transitional endoplasmi 96.2 0.0014 4.8E-08 68.5 1.6 40 523-564 44-83 (301)
277 1nn5_A Similar to deoxythymidy 96.1 0.0027 9.3E-08 62.0 3.6 27 525-551 6-32 (215)
278 2plr_A DTMP kinase, probable t 96.1 0.0029 9.8E-08 61.6 3.5 33 527-560 3-35 (213)
279 2fn4_A P23, RAS-related protei 96.1 0.0053 1.8E-07 57.5 5.3 22 530-551 11-32 (181)
280 3qf4_A ABC transporter, ATP-bi 96.0 2.9 9.9E-05 47.6 30.8 11 501-511 358-368 (587)
281 4a82_A Cystic fibrosis transme 96.0 0.85 2.9E-05 51.9 24.2 24 242-265 78-101 (578)
282 3cbq_A GTP-binding protein REM 96.0 0.0029 9.9E-08 61.3 3.0 36 530-565 25-71 (195)
283 3d8b_A Fidgetin-like protein 1 96.0 0.01 3.6E-07 63.4 7.6 27 526-552 115-141 (357)
284 1via_A Shikimate kinase; struc 96.0 0.003 1E-07 60.0 2.9 23 530-552 6-28 (175)
285 1z08_A RAS-related protein RAB 96.0 0.0048 1.6E-07 57.3 4.3 22 530-551 8-29 (170)
286 2bwj_A Adenylate kinase 5; pho 96.0 0.0029 1E-07 61.0 2.8 29 524-552 8-36 (199)
287 3q72_A GTP-binding protein RAD 96.0 0.0052 1.8E-07 56.9 4.4 24 530-553 4-27 (166)
288 2lkc_A Translation initiation 96.0 0.007 2.4E-07 56.7 5.4 42 526-567 6-58 (178)
289 2nzj_A GTP-binding protein REM 95.9 0.0058 2E-07 57.0 4.7 23 530-552 6-28 (175)
290 1nks_A Adenylate kinase; therm 95.9 0.0036 1.2E-07 59.8 3.3 24 530-553 3-26 (194)
291 2v1u_A Cell division control p 95.9 0.003 1E-07 67.2 2.9 29 526-554 42-70 (387)
292 2erx_A GTP-binding protein DI- 95.9 0.0064 2.2E-07 56.3 4.8 21 530-550 5-25 (172)
293 2vli_A Antibiotic resistance p 95.9 0.0032 1.1E-07 60.0 2.6 27 526-552 3-29 (183)
294 2ze6_A Isopentenyl transferase 95.9 0.0036 1.2E-07 63.9 3.1 23 530-552 3-25 (253)
295 1tev_A UMP-CMP kinase; ploop, 95.8 0.0043 1.5E-07 59.4 3.4 26 527-552 2-27 (196)
296 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.016 5.6E-07 61.1 8.0 28 525-552 42-69 (322)
297 2ew1_A RAS-related protein RAB 95.8 0.0081 2.8E-07 58.6 5.3 21 530-550 28-48 (201)
298 2dyk_A GTP-binding protein; GT 95.8 0.007 2.4E-07 55.6 4.6 23 530-552 3-25 (161)
299 2oil_A CATX-8, RAS-related pro 95.8 0.0088 3E-07 57.1 5.3 21 530-550 27-47 (193)
300 3ake_A Cytidylate kinase; CMP 95.7 0.0046 1.6E-07 60.0 3.1 23 530-552 4-26 (208)
301 2z0h_A DTMP kinase, thymidylat 95.7 0.0049 1.7E-07 59.2 3.2 23 530-552 2-24 (197)
302 1aky_A Adenylate kinase; ATP:A 95.7 0.0058 2E-07 60.4 3.7 27 526-552 2-28 (220)
303 3fb4_A Adenylate kinase; psych 95.7 0.0052 1.8E-07 60.3 3.2 23 530-552 2-24 (216)
304 1ksh_A ARF-like protein 2; sma 95.7 0.011 3.6E-07 56.1 5.3 40 526-565 16-63 (186)
305 1z0j_A RAB-22, RAS-related pro 95.6 0.0076 2.6E-07 55.8 4.2 23 530-552 8-30 (170)
306 3zvl_A Bifunctional polynucleo 95.6 0.011 3.9E-07 64.7 6.0 36 524-563 254-289 (416)
307 1a7j_A Phosphoribulokinase; tr 95.6 0.0034 1.2E-07 65.5 1.8 26 527-552 4-29 (290)
308 1zd8_A GTP:AMP phosphotransfer 95.6 0.006 2.1E-07 60.6 3.5 27 526-552 5-31 (227)
309 1upt_A ARL1, ADP-ribosylation 95.6 0.012 4.1E-07 54.6 5.3 30 528-557 7-40 (171)
310 1zuh_A Shikimate kinase; alpha 95.6 0.0063 2.2E-07 57.3 3.4 24 529-552 8-31 (168)
311 1z2a_A RAS-related protein RAB 95.6 0.006 2E-07 56.4 3.1 22 530-551 7-28 (168)
312 2cdn_A Adenylate kinase; phosp 95.6 0.0068 2.3E-07 58.9 3.7 26 527-552 19-44 (201)
313 2bcg_Y Protein YP2, GTP-bindin 95.6 0.011 3.9E-07 57.1 5.2 35 530-564 10-55 (206)
314 2pt5_A Shikimate kinase, SK; a 95.6 0.0063 2.2E-07 57.0 3.3 23 530-552 2-24 (168)
315 4fcw_A Chaperone protein CLPB; 95.6 0.0051 1.7E-07 63.8 2.9 36 528-563 47-83 (311)
316 3iby_A Ferrous iron transport 95.6 0.0068 2.3E-07 62.0 3.7 36 530-565 3-49 (256)
317 1zak_A Adenylate kinase; ATP:A 95.5 0.0057 2E-07 60.5 3.0 26 527-552 4-29 (222)
318 3dl0_A Adenylate kinase; phosp 95.5 0.0063 2.1E-07 59.8 3.2 23 530-552 2-24 (216)
319 1ukz_A Uridylate kinase; trans 95.5 0.0068 2.3E-07 58.9 3.5 26 527-552 14-39 (203)
320 2iyv_A Shikimate kinase, SK; t 95.5 0.0054 1.8E-07 58.6 2.7 24 529-552 3-26 (184)
321 3clv_A RAB5 protein, putative; 95.5 0.0085 2.9E-07 57.0 4.0 22 530-551 9-30 (208)
322 1qf9_A UMP/CMP kinase, protein 95.5 0.0063 2.1E-07 58.1 3.0 25 528-552 6-30 (194)
323 1e6c_A Shikimate kinase; phosp 95.5 0.0065 2.2E-07 57.2 3.0 24 529-552 3-26 (173)
324 2pbr_A DTMP kinase, thymidylat 95.5 0.0069 2.4E-07 57.9 3.2 23 530-552 2-24 (195)
325 1kao_A RAP2A; GTP-binding prot 95.5 0.007 2.4E-07 55.6 3.2 22 530-551 5-26 (167)
326 2ce2_X GTPase HRAS; signaling 95.5 0.0069 2.4E-07 55.5 3.1 22 530-551 5-26 (166)
327 1r2q_A RAS-related protein RAB 95.4 0.0097 3.3E-07 54.9 4.1 28 530-557 8-40 (170)
328 3q85_A GTP-binding protein REM 95.4 0.0074 2.5E-07 56.0 3.3 23 530-552 4-26 (169)
329 2ged_A SR-beta, signal recogni 95.4 0.007 2.4E-07 57.8 3.2 26 528-553 48-73 (193)
330 2grj_A Dephospho-COA kinase; T 95.4 0.0072 2.5E-07 59.2 3.2 24 529-552 13-36 (192)
331 3k53_A Ferrous iron transport 95.4 0.0069 2.4E-07 62.1 3.2 24 530-553 5-28 (271)
332 1m7b_A RND3/RHOE small GTP-bin 95.4 0.011 3.7E-07 56.2 4.4 29 530-558 9-42 (184)
333 1u8z_A RAS-related protein RAL 95.4 0.0073 2.5E-07 55.5 3.1 22 530-551 6-27 (168)
334 1g16_A RAS-related protein SEC 95.4 0.0075 2.6E-07 55.8 3.1 22 530-551 5-26 (170)
335 1uj2_A Uridine-cytidine kinase 95.4 0.0073 2.5E-07 61.2 3.2 24 529-552 23-46 (252)
336 3t1o_A Gliding protein MGLA; G 95.4 0.0076 2.6E-07 57.3 3.1 25 530-554 16-40 (198)
337 1c1y_A RAS-related protein RAP 95.3 0.008 2.7E-07 55.5 3.1 22 530-551 5-26 (167)
338 1ky3_A GTP-binding protein YPT 95.3 0.0082 2.8E-07 56.2 3.2 22 530-551 10-31 (182)
339 1zj6_A ADP-ribosylation factor 95.3 0.012 4E-07 56.0 4.3 39 527-565 15-61 (187)
340 1ek0_A Protein (GTP-binding pr 95.3 0.0082 2.8E-07 55.4 3.1 22 530-551 5-26 (170)
341 3tlx_A Adenylate kinase 2; str 95.3 0.0087 3E-07 60.5 3.5 27 526-552 27-53 (243)
342 1wms_A RAB-9, RAB9, RAS-relate 95.3 0.0083 2.9E-07 56.1 3.2 22 530-551 9-30 (177)
343 2q3h_A RAS homolog gene family 95.3 0.015 5.2E-07 55.8 5.1 38 527-564 19-66 (201)
344 2atv_A RERG, RAS-like estrogen 95.3 0.016 5.6E-07 55.5 5.3 30 529-558 29-63 (196)
345 3lxw_A GTPase IMAP family memb 95.3 0.0083 2.8E-07 60.8 3.3 24 529-552 22-45 (247)
346 3tw8_B RAS-related protein RAB 95.2 0.0086 2.9E-07 56.0 3.0 22 530-551 11-32 (181)
347 1svi_A GTP-binding protein YSX 95.2 0.0087 3E-07 57.1 3.0 24 528-551 23-46 (195)
348 3t5d_A Septin-7; GTP-binding p 95.2 0.0081 2.8E-07 61.7 3.0 23 530-552 10-32 (274)
349 3pqc_A Probable GTP-binding pr 95.2 0.0088 3E-07 56.8 3.0 24 529-552 24-47 (195)
350 3a8t_A Adenylate isopentenyltr 95.2 0.013 4.3E-07 62.5 4.5 28 526-553 38-65 (339)
351 3kkq_A RAS-related protein M-R 95.2 0.016 5.6E-07 54.5 4.8 22 530-551 20-41 (183)
352 3c5c_A RAS-like protein 12; GD 95.2 0.019 6.6E-07 54.8 5.3 29 530-558 23-56 (187)
353 3bos_A Putative DNA replicatio 95.1 0.0077 2.6E-07 59.3 2.5 28 527-554 51-78 (242)
354 3t5g_A GTP-binding protein RHE 95.1 0.017 5.7E-07 54.4 4.7 29 530-558 8-41 (181)
355 2gf0_A GTP-binding protein DI- 95.1 0.016 5.5E-07 55.3 4.7 22 529-550 9-30 (199)
356 2f6r_A COA synthase, bifunctio 95.1 0.01 3.5E-07 61.4 3.5 23 528-550 75-97 (281)
357 3pfi_A Holliday junction ATP-d 95.1 0.042 1.4E-06 57.7 8.3 25 529-553 56-80 (338)
358 3a4m_A L-seryl-tRNA(SEC) kinas 95.1 0.011 3.6E-07 60.4 3.5 27 526-552 2-28 (260)
359 2cxx_A Probable GTP-binding pr 95.1 0.0099 3.4E-07 56.3 3.0 23 530-552 3-25 (190)
360 4dsu_A GTPase KRAS, isoform 2B 95.1 0.01 3.5E-07 56.0 3.2 22 530-551 6-27 (189)
361 3bc1_A RAS-related protein RAB 95.1 0.01 3.5E-07 56.1 3.1 21 530-550 13-33 (195)
362 1r8s_A ADP-ribosylation factor 95.1 0.011 3.6E-07 54.6 3.1 21 530-550 2-22 (164)
363 2fv8_A H6, RHO-related GTP-bin 95.1 0.0057 1.9E-07 59.5 1.3 35 517-551 14-48 (207)
364 2fg5_A RAB-22B, RAS-related pr 95.1 0.014 4.9E-07 55.8 4.2 28 530-557 25-57 (192)
365 3dm5_A SRP54, signal recogniti 95.1 0.081 2.8E-06 58.3 10.7 35 527-561 99-133 (443)
366 2y8e_A RAB-protein 6, GH09086P 95.1 0.011 3.6E-07 55.3 3.1 21 530-550 16-36 (179)
367 2hxs_A RAB-26, RAS-related pro 95.1 0.012 4E-07 55.1 3.4 22 530-551 8-29 (178)
368 2g3y_A GTP-binding protein GEM 95.1 0.02 6.9E-07 56.6 5.2 24 529-552 38-61 (211)
369 3n70_A Transport activator; si 95.0 0.013 4.4E-07 54.1 3.6 38 526-563 22-59 (145)
370 3b1v_A Ferrous iron uptake tra 95.0 0.011 3.7E-07 61.1 3.3 23 530-552 5-27 (272)
371 4bas_A ADP-ribosylation factor 95.0 0.014 4.7E-07 55.8 3.9 30 528-557 17-52 (199)
372 2g6b_A RAS-related protein RAB 95.0 0.011 3.9E-07 55.3 3.1 22 530-551 12-33 (180)
373 1gwn_A RHO-related GTP-binding 95.0 0.017 5.7E-07 56.5 4.4 29 530-558 30-63 (205)
374 2w58_A DNAI, primosome compone 94.9 0.012 4.2E-07 57.0 3.2 30 529-558 55-84 (202)
375 3be4_A Adenylate kinase; malar 94.9 0.013 4.4E-07 57.9 3.4 26 527-552 4-29 (217)
376 1z0f_A RAB14, member RAS oncog 94.9 0.012 4.3E-07 54.8 3.1 23 530-552 17-39 (179)
377 2efe_B Small GTP-binding prote 94.9 0.013 4.4E-07 55.0 3.2 22 530-551 14-35 (181)
378 2a9k_A RAS-related protein RAL 94.9 0.013 4.4E-07 55.1 3.1 22 530-551 20-41 (187)
379 3reg_A RHO-like small GTPase; 94.8 0.02 6.9E-07 54.7 4.5 22 530-551 25-46 (194)
380 3con_A GTPase NRAS; structural 94.8 0.013 4.5E-07 55.6 3.1 22 530-551 23-44 (190)
381 1e4v_A Adenylate kinase; trans 94.8 0.013 4.6E-07 57.5 3.2 23 530-552 2-24 (214)
382 2bme_A RAB4A, RAS-related prot 94.8 0.013 4.6E-07 55.2 3.1 22 530-551 12-33 (186)
383 1jbk_A CLPB protein; beta barr 94.8 0.016 5.4E-07 54.5 3.5 28 526-553 41-68 (195)
384 1sky_E F1-ATPase, F1-ATP synth 94.8 0.0067 2.3E-07 67.4 1.0 45 516-561 140-184 (473)
385 1zd9_A ADP-ribosylation factor 94.8 0.018 6.2E-07 54.9 3.9 22 529-550 23-44 (188)
386 2h92_A Cytidylate kinase; ross 94.8 0.011 3.7E-07 58.1 2.4 25 528-552 3-27 (219)
387 1moz_A ARL1, ADP-ribosylation 94.8 0.0099 3.4E-07 56.0 1.9 24 527-550 17-40 (183)
388 2gf9_A RAS-related protein RAB 94.7 0.015 5E-07 55.5 3.1 22 530-551 24-45 (189)
389 3llu_A RAS-related GTP-binding 94.7 0.015 5.2E-07 55.9 3.3 24 530-553 22-45 (196)
390 1ypw_A Transitional endoplasmi 94.7 0.0016 5.4E-08 77.6 -4.6 46 521-568 504-549 (806)
391 1vg8_A RAS-related protein RAB 94.7 0.015 5.1E-07 56.0 3.2 23 530-552 10-32 (207)
392 2bov_A RAla, RAS-related prote 94.7 0.015 5.1E-07 55.9 3.1 29 530-558 16-49 (206)
393 2gco_A H9, RHO-related GTP-bin 94.7 0.028 9.6E-07 54.2 5.1 22 530-551 27-48 (201)
394 2cjw_A GTP-binding protein GEM 94.7 0.015 5.2E-07 56.0 3.1 21 530-550 8-28 (192)
395 2xtp_A GTPase IMAP family memb 94.7 0.015 5.3E-07 58.8 3.3 24 529-552 23-46 (260)
396 4dhe_A Probable GTP-binding pr 94.7 0.0093 3.2E-07 58.4 1.6 25 528-552 29-53 (223)
397 3auy_A DNA double-strand break 94.7 0.02 6.7E-07 61.7 4.2 31 518-549 16-46 (371)
398 2qmh_A HPR kinase/phosphorylas 94.6 0.021 7.2E-07 56.3 4.0 36 516-552 23-58 (205)
399 1z06_A RAS-related protein RAB 94.6 0.016 5.6E-07 55.1 3.2 21 530-550 22-42 (189)
400 3dz8_A RAS-related protein RAB 94.6 0.016 5.5E-07 55.3 3.1 23 530-552 25-47 (191)
401 1zbd_A Rabphilin-3A; G protein 94.6 0.017 5.8E-07 55.6 3.3 22 530-551 10-31 (203)
402 3cpj_B GTP-binding protein YPT 94.6 0.026 8.7E-07 55.6 4.6 22 530-551 15-36 (223)
403 3bgw_A DNAB-like replicative h 94.6 0.011 3.6E-07 65.6 2.0 34 517-550 186-219 (444)
404 3oes_A GTPase rhebl1; small GT 94.6 0.016 5.5E-07 55.9 3.1 25 528-552 24-48 (201)
405 1mh1_A RAC1; GTP-binding, GTPa 94.6 0.017 5.7E-07 54.3 3.1 21 530-550 7-27 (186)
406 3d3q_A TRNA delta(2)-isopenten 94.6 0.017 5.7E-07 61.7 3.4 25 529-553 8-32 (340)
407 3tqf_A HPR(Ser) kinase; transf 94.6 0.017 5.8E-07 55.7 3.1 34 516-550 5-38 (181)
408 1nrj_B SR-beta, signal recogni 94.6 0.016 5.6E-07 56.4 3.1 24 529-552 13-36 (218)
409 3tmk_A Thymidylate kinase; pho 94.6 0.018 6.3E-07 57.4 3.5 29 526-554 3-31 (216)
410 1wf3_A GTP-binding protein; GT 94.6 0.016 5.6E-07 60.6 3.3 22 530-551 9-30 (301)
411 2xb4_A Adenylate kinase; ATP-b 94.6 0.017 5.9E-07 57.3 3.3 23 530-552 2-24 (223)
412 3tkl_A RAS-related protein RAB 94.5 0.021 7.3E-07 54.3 3.8 23 530-552 18-40 (196)
413 3v9p_A DTMP kinase, thymidylat 94.5 0.016 5.4E-07 58.3 2.9 28 526-553 23-50 (227)
414 2il1_A RAB12; G-protein, GDP, 94.5 0.017 5.7E-07 55.4 3.0 22 530-551 28-49 (192)
415 1ak2_A Adenylate kinase isoenz 94.5 0.021 7.1E-07 57.0 3.7 27 526-552 14-40 (233)
416 2o52_A RAS-related protein RAB 94.5 0.019 6.4E-07 55.5 3.3 22 530-551 27-48 (200)
417 2qu8_A Putative nucleolar GTP- 94.5 0.018 6E-07 57.0 3.1 23 529-551 30-52 (228)
418 2a5j_A RAS-related protein RAB 94.5 0.018 6.3E-07 54.9 3.1 22 530-551 23-44 (191)
419 3erv_A Putative C39-like pepti 94.4 0.022 7.6E-07 57.5 3.8 38 96-137 176-215 (236)
420 4edh_A DTMP kinase, thymidylat 94.4 0.021 7.1E-07 56.8 3.5 28 526-553 4-31 (213)
421 2h57_A ADP-ribosylation factor 94.4 0.016 5.4E-07 55.3 2.5 24 529-552 22-45 (190)
422 3qf4_B Uncharacterized ABC tra 94.4 8.8 0.0003 43.6 29.1 12 501-512 370-381 (598)
423 3i8s_A Ferrous iron transport 94.4 0.019 6.6E-07 59.0 3.3 23 530-552 5-27 (274)
424 3cnl_A YLQF, putative uncharac 94.4 0.022 7.4E-07 58.5 3.6 31 529-559 100-130 (262)
425 3bwd_D RAC-like GTP-binding pr 94.4 0.023 7.8E-07 53.3 3.5 24 528-551 8-31 (182)
426 2axn_A 6-phosphofructo-2-kinas 94.4 0.02 6.9E-07 64.6 3.6 26 527-552 34-59 (520)
427 4gzl_A RAS-related C3 botulinu 94.4 0.033 1.1E-06 54.0 4.7 32 528-559 30-66 (204)
428 3b5x_A Lipid A export ATP-bind 94.4 8.8 0.0003 43.4 38.0 9 502-510 359-367 (582)
429 3exa_A TRNA delta(2)-isopenten 94.4 0.023 7.8E-07 59.9 3.7 25 528-552 3-27 (322)
430 3cph_A RAS-related protein SEC 94.4 0.02 6.8E-07 55.4 3.1 24 528-551 20-43 (213)
431 2h17_A ADP-ribosylation factor 94.4 0.018 6.2E-07 54.4 2.8 37 529-565 22-66 (181)
432 2iwr_A Centaurin gamma 1; ANK 94.3 0.016 5.5E-07 54.3 2.4 23 529-551 8-30 (178)
433 3lv8_A DTMP kinase, thymidylat 94.3 0.023 7.8E-07 57.5 3.6 27 527-553 26-52 (236)
434 1x3s_A RAS-related protein RAB 94.3 0.021 7.1E-07 54.2 3.1 22 530-551 17-38 (195)
435 2j1l_A RHO-related GTP-binding 94.3 0.022 7.5E-07 55.8 3.3 21 530-550 36-56 (214)
436 3iev_A GTP-binding protein ERA 94.3 0.02 7E-07 59.9 3.3 24 529-552 11-34 (308)
437 2wsm_A Hydrogenase expression/ 94.3 0.021 7.2E-07 55.9 3.2 24 529-552 31-54 (221)
438 2p5s_A RAS and EF-hand domain 94.3 0.021 7.2E-07 55.0 3.1 25 527-551 27-51 (199)
439 2ocp_A DGK, deoxyguanosine kin 94.3 0.023 8E-07 56.9 3.5 27 527-553 1-27 (241)
440 3a1s_A Iron(II) transport prot 94.2 0.022 7.6E-07 58.1 3.3 23 530-552 7-29 (258)
441 2f7s_A C25KG, RAS-related prot 94.2 0.023 7.9E-07 55.3 3.3 23 530-552 27-49 (217)
442 3ld9_A DTMP kinase, thymidylat 94.2 0.025 8.5E-07 56.8 3.5 28 526-553 19-46 (223)
443 3q3j_B RHO-related GTP-binding 94.2 0.029 1E-06 55.0 4.0 31 529-559 28-63 (214)
444 4tmk_A Protein (thymidylate ki 94.2 0.027 9.1E-07 56.0 3.7 28 527-554 2-29 (213)
445 2fh5_B SR-beta, signal recogni 94.2 0.03 1E-06 54.4 3.9 24 529-552 8-31 (214)
446 1ltq_A Polynucleotide kinase; 94.2 0.023 7.8E-07 58.7 3.3 22 529-550 3-24 (301)
447 2p65_A Hypothetical protein PF 94.2 0.02 6.9E-07 53.7 2.6 29 526-554 41-69 (187)
448 1h65_A Chloroplast outer envel 94.2 0.023 7.9E-07 58.1 3.3 23 530-552 41-63 (270)
449 3def_A T7I23.11 protein; chlor 94.1 0.024 8.1E-07 57.8 3.3 23 530-552 38-60 (262)
450 2fu5_C RAS-related protein RAB 94.1 0.016 5.5E-07 54.6 1.8 22 530-551 10-31 (183)
451 1p5z_B DCK, deoxycytidine kina 94.1 0.017 5.8E-07 58.8 2.0 29 525-553 21-49 (263)
452 2b6h_A ADP-ribosylation factor 94.0 0.024 8.3E-07 54.4 2.9 33 516-550 19-51 (192)
453 2atx_A Small GTP binding prote 94.0 0.027 9.2E-07 53.7 3.2 22 530-551 20-41 (194)
454 1jwy_B Dynamin A GTPase domain 93.9 0.026 9.1E-07 58.6 3.2 23 530-552 26-48 (315)
455 2aka_B Dynamin-1; fusion prote 93.9 0.025 8.7E-07 58.1 3.0 24 529-552 27-50 (299)
456 2r62_A Cell division protease 93.9 0.0095 3.2E-07 60.5 -0.2 32 518-551 36-67 (268)
457 3crm_A TRNA delta(2)-isopenten 93.8 0.028 9.6E-07 59.5 3.2 25 529-553 6-30 (323)
458 2hf9_A Probable hydrogenase ni 93.8 0.029 9.9E-07 55.1 3.1 24 529-552 39-62 (226)
459 2qz4_A Paraplegin; AAA+, SPG7, 93.8 0.032 1.1E-06 56.0 3.5 28 525-552 36-63 (262)
460 3b60_A Lipid A export ATP-bind 93.8 11 0.00038 42.6 35.0 8 502-509 359-366 (582)
461 3r7w_A Gtpase1, GTP-binding pr 93.8 0.032 1.1E-06 58.4 3.5 27 526-552 1-27 (307)
462 1njg_A DNA polymerase III subu 93.7 0.023 8E-07 55.2 2.3 38 517-554 31-71 (250)
463 4djt_A GTP-binding nuclear pro 93.7 0.015 5.2E-07 56.7 0.8 22 530-551 13-34 (218)
464 3gj0_A GTP-binding nuclear pro 93.6 0.03 1E-06 54.8 2.9 38 645-682 166-208 (221)
465 2x77_A ADP-ribosylation factor 93.6 0.023 7.8E-07 54.0 1.9 24 527-550 21-44 (189)
466 2hup_A RAS-related protein RAB 93.6 0.034 1.2E-06 53.8 3.2 22 530-551 31-52 (201)
467 3umf_A Adenylate kinase; rossm 93.5 0.034 1.2E-06 55.5 3.0 29 524-552 25-53 (217)
468 2yc2_C IFT27, small RAB-relate 93.4 0.018 6E-07 55.4 0.8 23 529-551 21-43 (208)
469 3foz_A TRNA delta(2)-isopenten 93.4 0.04 1.4E-06 57.9 3.5 26 528-553 10-35 (316)
470 3geh_A MNME, tRNA modification 93.4 0.037 1.3E-06 61.5 3.4 48 526-573 222-281 (462)
471 2v3c_C SRP54, signal recogniti 93.3 0.014 4.9E-07 64.3 -0.1 39 529-567 100-138 (432)
472 2yl4_A ATP-binding cassette SU 93.3 13 0.00046 42.0 33.5 13 500-512 358-370 (595)
473 3l0o_A Transcription terminati 93.3 0.019 6.5E-07 62.2 0.7 52 499-552 137-199 (427)
474 4dkx_A RAS-related protein RAB 93.2 0.045 1.5E-06 54.3 3.4 28 530-557 15-47 (216)
475 2i1q_A DNA repair and recombin 93.2 0.046 1.6E-06 57.4 3.6 27 524-550 94-120 (322)
476 2j0v_A RAC-like GTP-binding pr 93.2 0.043 1.5E-06 53.2 3.1 22 529-550 10-31 (212)
477 2zts_A Putative uncharacterize 93.2 0.053 1.8E-06 53.8 3.9 24 525-548 27-50 (251)
478 1puj_A YLQF, conserved hypothe 93.2 0.053 1.8E-06 56.2 4.0 30 528-557 120-149 (282)
479 1u94_A RECA protein, recombina 93.1 0.037 1.3E-06 59.4 2.7 48 516-564 49-100 (356)
480 3eph_A TRNA isopentenyltransfe 93.0 0.048 1.6E-06 59.4 3.4 25 529-553 3-27 (409)
481 1g8f_A Sulfate adenylyltransfe 92.9 0.046 1.6E-06 61.4 3.2 29 526-554 393-421 (511)
482 3syl_A Protein CBBX; photosynt 92.8 0.058 2E-06 55.7 3.6 26 527-552 66-91 (309)
483 1mky_A Probable GTP-binding pr 92.8 0.081 2.8E-06 58.1 4.9 37 530-566 3-51 (439)
484 1lnz_A SPO0B-associated GTP-bi 92.7 0.076 2.6E-06 56.6 4.5 45 519-563 149-204 (342)
485 3ec1_A YQEH GTPase; atnos1, at 92.6 0.051 1.8E-06 58.5 2.9 26 527-552 161-186 (369)
486 1m8p_A Sulfate adenylyltransfe 92.4 0.063 2.1E-06 61.3 3.5 38 526-564 394-434 (573)
487 2chg_A Replication factor C sm 92.4 0.062 2.1E-06 51.6 3.0 23 530-552 40-62 (226)
488 3h2y_A GTPase family protein; 92.3 0.053 1.8E-06 58.4 2.7 26 527-552 159-184 (368)
489 3hws_A ATP-dependent CLP prote 92.3 0.061 2.1E-06 57.3 3.0 26 527-552 50-75 (363)
490 4hlc_A DTMP kinase, thymidylat 92.2 0.075 2.5E-06 52.4 3.4 26 528-553 2-27 (205)
491 3th5_A RAS-related C3 botulinu 91.4 0.026 8.9E-07 54.4 0.0 23 528-550 30-52 (204)
492 1knx_A Probable HPR(Ser) kinas 92.2 0.1 3.4E-06 54.9 4.4 34 516-550 136-169 (312)
493 2hjg_A GTP-binding protein ENG 92.1 0.12 4.2E-06 56.6 5.3 45 530-574 177-233 (436)
494 2bjv_A PSP operon transcriptio 92.1 0.11 3.6E-06 52.6 4.5 38 526-563 27-65 (265)
495 3l0i_B RAS-related protein RAB 92.1 0.018 6.3E-07 55.4 -1.3 23 530-552 35-57 (199)
496 3fdi_A Uncharacterized protein 92.1 0.078 2.7E-06 52.0 3.3 24 529-552 7-30 (201)
497 2hjg_A GTP-binding protein ENG 92.0 0.064 2.2E-06 58.9 2.9 22 530-551 5-26 (436)
498 3gee_A MNME, tRNA modification 92.0 0.052 1.8E-06 60.6 2.1 45 526-570 231-287 (476)
499 1x6v_B Bifunctional 3'-phospho 91.9 0.078 2.7E-06 61.0 3.5 39 527-566 51-91 (630)
500 3pvs_A Replication-associated 91.8 0.046 1.6E-06 60.5 1.4 39 519-557 39-79 (447)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2e-86 Score=825.60 Aligned_cols=456 Identities=32% Similarity=0.449 Sum_probs=423.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 227 LILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNV 306 (703)
Q Consensus 227 l~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~ 306 (703)
++.+.++..++.+++.++..+.+.++..++|.++|+|++++|++||+++++||+++|+++|++.+++.+...+..++.++
T Consensus 142 ~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~ 221 (1321)
T 4f4c_A 142 YAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYL 221 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHH
Q 005302 307 LQGTGALIYLIVLSWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRY 386 (703)
Q Consensus 307 l~~i~~li~m~~~s~~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~ 386 (703)
+++++++++|+.++|++++++++.+|+++++..++.++.++..++.++..++.++.+.|+++|+++||+||+|+.+.+||
T Consensus 222 ~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~ 301 (1321)
T 4f4c_A 222 SQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERY 301 (1321)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHH
Confidence 99999999999999999999999999998888888888888888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 387 KHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQ 466 (703)
Q Consensus 387 ~~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~ 466 (703)
.+..++..+...+.....+.......++..+..++++|+|++++.+|.+|+|.+++++.|...+..++..+...+..+.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 381 (1321)
T 4f4c_A 302 STAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGT 381 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888877777777777888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCccccc-cccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHH
Q 005302 467 SVGASEKVFQLMDLMPSDQFMSK-GKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLV 545 (703)
Q Consensus 467 ~~~~~~Ri~dil~~~~e~~~~~~-~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLl 545 (703)
+..+.+|+.++++.+|+...... +..+.+..|+|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+
T Consensus 382 ~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll 461 (1321)
T 4f4c_A 382 AQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTII 461 (1321)
T ss_dssp HHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHH
T ss_pred HHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHH
Confidence 99999999999998876442221 22333456789999999999976668999999999999999999999999999999
Q ss_pred HHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcC
Q 005302 546 NLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSL 625 (703)
Q Consensus 546 kLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~L 625 (703)
++|+|+|+|++|+|++||+|+++++.+++|++||||+|||+||+|||+|||+||++ ++++|++++||+.|++||||++|
T Consensus 462 ~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~-~~~~~~v~~a~~~a~l~~~i~~l 540 (1321)
T 4f4c_A 462 SLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE-GITREEMVAACKMANAEKFIKTL 540 (1321)
T ss_dssp HHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHHHHHS
T ss_pred HHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcc-cchHHHHHHHHHHccchhHHHcC
Confidence 99999999999999999999999999999999999999999999999999999987 89999999999999999999999
Q ss_pred CCCcccccCC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 626 PSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 626 P~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
|+||||.||| .+|||||||||+||||+|+||+||||||||||||+++|+.|+++|+++
T Consensus 541 p~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~ 600 (1321)
T 4f4c_A 541 PNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKA 600 (1321)
T ss_dssp TTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred CCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHH
Confidence 9999999999 499999999999999999999999999999999999999999999864
No 2
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=8.8e-84 Score=743.98 Aligned_cols=522 Identities=24% Similarity=0.372 Sum_probs=458.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 172 KMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQS-SEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANM 250 (703)
Q Consensus 172 ~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~-~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~ 250 (703)
+++++++++++.++.+++++++..++.++.|++++..++.... .+.........+++++.++..++.+++.++..+.+.
T Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (587)
T 3qf4_A 13 TLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYASQ 92 (587)
T ss_dssp CGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999999999888764321 121112122223334445566778888999999999
Q ss_pred HHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005302 251 ILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMI 330 (703)
Q Consensus 251 ~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv~l~~ 330 (703)
++..++|..+|+|++++|+.||+++++|++++|+++|++.+++.+...+..++..+++.++++++++.++|++++++++.
T Consensus 93 ~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~ 172 (587)
T 3qf4_A 93 NFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFL 172 (587)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 331 CSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLC 410 (703)
Q Consensus 331 ~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~ 410 (703)
+|+++++..++.+..++..++..+..++.++.+.|+++|+++||+|++|+.+.++|.+..+++.+...+..+.......+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (587)
T 3qf4_A 173 IPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPL 252 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888887777777777777777778899999999999999999999999999999999999998888877777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccccc
Q 005302 411 FNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKG 490 (703)
Q Consensus 411 ~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~~ 490 (703)
..++..+..++++++|++++..|.+|+|.+++++.|..++..++..+...+..+.++..+.+|+.++++.+++.++....
T Consensus 253 ~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~ 332 (587)
T 3qf4_A 253 FIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNA 332 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCc
Confidence 77777778888999999999999999999999999999999999999999999999999999999999987764322222
Q ss_pred ccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC
Q 005302 491 KKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD 570 (703)
Q Consensus 491 ~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~ 570 (703)
...++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+|+|+|+|+|++|+|.+||+|+++++
T Consensus 333 ~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~ 411 (587)
T 3qf4_A 333 LALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK 411 (587)
T ss_dssp BCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBC
T ss_pred cccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCC
Confidence 2223345789999999999864 368999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHH
Q 005302 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAI 648 (703)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaL 648 (703)
.+++|++||||+||+.+|++||+|||.++.+ +.++++++++++.++++|++.++|+||||.+|+ .+||||||||++|
T Consensus 412 ~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~l 490 (587)
T 3qf4_A 412 LKDLRGHISAVPQETVLFSGTIKENLKWGRE-DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSI 490 (587)
T ss_dssp HHHHHHHEEEECSSCCCCSEEHHHHHTTTCS-SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHH
T ss_pred HHHHHhheEEECCCCcCcCccHHHHHhccCC-CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHH
Confidence 9999999999999999999999999999976 789999999999999999999999999999998 4999999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
||||+++|+|||||||||+||+++|++|.+.|+++. -.+-.-|-++.
T Consensus 491 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~ 540 (587)
T 3qf4_A 491 ARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPT 540 (587)
T ss_dssp HHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHH
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHH
Confidence 999999999999999999999999999999998643 34455676654
No 3
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=8.5e-84 Score=743.20 Aligned_cols=523 Identities=30% Similarity=0.387 Sum_probs=459.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hh---hHHH----HHHHHHHHHHHHHHHHHHHHH
Q 005302 170 LGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQS-SE---IAVF----HRNVRLLILLCVTSGICSGLR 241 (703)
Q Consensus 170 ~~~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~-~d---~~~~----~~~~~ll~~l~~~~~~~~~lr 241 (703)
+++++++++++++.++.+++++++..++.++.|++++..++.... .+ .... ......+.++.++..++.+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999999999998887654321 11 1111 011112223334456678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005302 242 GCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSW 321 (703)
Q Consensus 242 ~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~ 321 (703)
.++..+.+.++..++|.++|+|++++|++||+++++||+++|+++|++.+++.+...+..++.++++.++++++++.++|
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 161 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV 161 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999988888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Q 005302 322 PLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQS 401 (703)
Q Consensus 322 ~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~ 401 (703)
++++++++.+|+++++..++.+..++..++..+..++.++.+.|+++|+++||+||.|+.+.++|++..++..+...+..
T Consensus 162 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 241 (578)
T 4a82_A 162 KLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241 (578)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888887777777777777777778899999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 005302 402 AAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLM 481 (703)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~ 481 (703)
++......+..++..+..++++++|++++..|.+|+|.+++++.|...+..++..+...+..+.++..+.+|+.++++.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~ 321 (578)
T 4a82_A 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888888888888888889999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCccccccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEE
Q 005302 482 PSDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILI 561 (703)
Q Consensus 482 ~e~~~~~~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~i 561 (703)
++..+.......++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+|+|+|+|+|++|+|.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 400 (578)
T 4a82_A 322 YDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI 400 (578)
T ss_dssp CSSCCCTTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEE
T ss_pred CcccCCCCccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEE
Confidence 7643211122222345789999999999864 368999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCC
Q 005302 562 DGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLS 639 (703)
Q Consensus 562 dG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LS 639 (703)
||+|+++++.+++|++||||+|||.+|++||+|||.++.+ +.++++++++++.++++|++.++|+||||.+|+ .+||
T Consensus 401 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LS 479 (578)
T 4a82_A 401 DGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP-TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479 (578)
T ss_dssp TTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS-SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSC
T ss_pred CCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCC
Confidence 9999999999999999999999999999999999999976 788999999999999999999999999999999 5999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchh
Q 005302 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLS 694 (703)
Q Consensus 640 GGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~ 694 (703)
||||||++|||||+++|+|||||||||+||+++|+.|.+.++++. -.+-.-|-++
T Consensus 480 gGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 537 (578)
T 4a82_A 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 537 (578)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGG
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 999999999999999999999999999999999999999987643 3344556655
No 4
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=9.3e-84 Score=745.49 Aligned_cols=526 Identities=26% Similarity=0.430 Sum_probs=467.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 166 LWRALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQS-SEIAVFHRNVRLLILLCVTSGICSGLRGCC 244 (703)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~-~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~ 244 (703)
.+..+++++++++++++.++.+++++++..++.+..|++++..++.... .+..........+.++.++..++.+++.++
T Consensus 21 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (598)
T 3qf4_B 21 PTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKI 100 (598)
T ss_dssp HHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999999999998888764321 121122222333444555677788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005302 245 FGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLG 324 (703)
Q Consensus 245 ~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~La 324 (703)
....+.++..++|.++|+|++++|++||+++++||+++|+++|++.+++.+...+..++.+++++++++++++.++|+++
T Consensus 101 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 180 (598)
T 3qf4_B 101 MLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILS 180 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 325 LCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAY 404 (703)
Q Consensus 325 lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~ 404 (703)
+++++.+|+++++..++.+..++..+...+..++.++.+.|+++|+++||+||.|+.+.++|++..++..+...+..+..
T Consensus 181 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (598)
T 3qf4_B 181 LVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFS 260 (598)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888887777777777777777778899999999999999999999999999999999999998888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 005302 405 GFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSD 484 (703)
Q Consensus 405 ~~~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~ 484 (703)
.....+.+++..+..++++++|++++..|.+|+|.+++++.|...+..++..+...+..+..+..+.+|+.++++.+++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 340 (598)
T 3qf4_B 261 GVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEK 340 (598)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 77777777777788888999999999999999999999999999999999999999999999999999999999987764
Q ss_pred ccccccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE
Q 005302 485 QFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF 564 (703)
Q Consensus 485 ~~~~~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~ 564 (703)
.. ......++..+.|+++||+|+|+++ .++|+|+||+|++||++|||||||||||||+|+|+|+|+|++|+|.+||+
T Consensus 341 ~~-~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 417 (598)
T 3qf4_B 341 DD-PDAVELREVRGEIEFKNVWFSYDKK--KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGI 417 (598)
T ss_dssp CC-SSCCCCCSCCCCEEEEEEECCSSSS--SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTE
T ss_pred CC-CCCCCCCCCCCeEEEEEEEEECCCC--CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCE
Confidence 31 1122223345789999999999753 57999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHH
Q 005302 565 PIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQ 642 (703)
Q Consensus 565 di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQ 642 (703)
|+++++.+++|++||||+|||.+|++||+|||.++++ +.++++++++++.++++++++++|+||||.+|+ .+|||||
T Consensus 418 ~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 496 (598)
T 3qf4_B 418 DIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP-GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQ 496 (598)
T ss_dssp EGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST-TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHH
T ss_pred EhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC-CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHH
Confidence 9999999999999999999999999999999999976 788999999999999999999999999999998 5999999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC---CcEEEEecchhH
Q 005302 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN---GLLVKSLHFLSL 695 (703)
Q Consensus 643 kQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~---~~~~~~~~~~~~ 695 (703)
|||++|||||+++|+|||||||||+||+++|+.|.+.|+++ .-.+-.-|-++.
T Consensus 497 ~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 552 (598)
T 3qf4_B 497 RQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNT 552 (598)
T ss_dssp HHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTH
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 99999999999999999999999999999999999998864 334555676664
No 5
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=6.6e-82 Score=728.18 Aligned_cols=524 Identities=27% Similarity=0.414 Sum_probs=459.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 168 RALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQS-SEIAVFHRNVRLLILLCVTSGICSGLRGCCFG 246 (703)
Q Consensus 168 ~~~~~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~-~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~ 246 (703)
+.+++++++.+++++.++.+++++++..++.++.|+++...++.... .+..........+.++.++..++.+++.++..
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (582)
T 3b5x_A 11 QTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLS 90 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888899999999999988877654321 11111111111123334456677888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005302 247 IANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLC 326 (703)
Q Consensus 247 ~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv 326 (703)
..+.++..++|.++|+|++++|++||+++++||+++|+++|++.+++.+...+..++.++++.++++++++.++|+++++
T Consensus 91 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 170 (582)
T 3b5x_A 91 WVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLV 170 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 327 TLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGF 406 (703)
Q Consensus 327 ~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~ 406 (703)
+++.+|+++++...+.+..++..++..+..++..+.+.|+++|+++||+||.|+.+.++|++..++..+...+..+....
T Consensus 171 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3b5x_A 171 LIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSI 250 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888877777777777777777777888999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 005302 407 WNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQF 486 (703)
Q Consensus 407 ~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~ 486 (703)
...+..++..+..++++++|++++.+|.+|+|.+++++.|...+..++..+...+..+.++..+.+|+.++++.+++.+.
T Consensus 251 ~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 330 (582)
T 3b5x_A 251 ADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN 330 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Confidence 88888888888888899999999999999999999999999999999999999999999999999999999988765431
Q ss_pred ccccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeC
Q 005302 487 MSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI 566 (703)
Q Consensus 487 ~~~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di 566 (703)
...+.++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+|+|+|+|+|++|+|.+||+|+
T Consensus 331 --~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~ 407 (582)
T 3b5x_A 331 --GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDV 407 (582)
T ss_pred --CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEh
Confidence 111122234679999999999853 25799999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHhhcceEEEccCCccccccHHHHhccCC-CCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHH
Q 005302 567 KEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGC-TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (703)
Q Consensus 567 ~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~-~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (703)
++++.+++|++||||+|||.+|++||+|||.++. + +.++++++++++.++++++++++|+||||.+|+ .+||||||
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~ 486 (582)
T 3b5x_A 408 RDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEG-EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQR 486 (582)
T ss_pred hhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCC-CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHH
Confidence 9999999999999999999999999999999996 4 678999999999999999999999999999999 49999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 644 QRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
||++|||||+++|+|||||||||+||+++|+.|.+.|+++. -.+-.-|-++.
T Consensus 487 qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 541 (582)
T 3b5x_A 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLST 541 (582)
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 99999999999999999999999999999999999998763 24455676654
No 6
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=7.9e-82 Score=729.29 Aligned_cols=527 Identities=31% Similarity=0.496 Sum_probs=456.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch---hh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 169 ALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSS---EI-AVFHRNVRLLILLCVTSGICSGLRGCC 244 (703)
Q Consensus 169 ~~~~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~---d~-~~~~~~~~ll~~l~~~~~~~~~lr~~~ 244 (703)
.+++++++.+++++.++.+++++++..++.++.|++++..++..... +. .........++++.++..++.+++.++
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (595)
T 2yl4_A 6 EARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYL 85 (595)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788889999888888888888888888998887776532111 00 011111122233344456678888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005302 245 FGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLG 324 (703)
Q Consensus 245 ~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~La 324 (703)
....+.++..++|.++|+|++++|++||+++++||+++|+++|++.+++.+...+..++.++++.++.+++++.++|+++
T Consensus 86 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 165 (595)
T 2yl4_A 86 MQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLA 165 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 325 LCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAY 404 (703)
Q Consensus 325 lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~ 404 (703)
+++++.+|+++++...+.+..++..++..+..++.++.+.|+++|+++||+||.|+.+.++|.+..++..+...+..+..
T Consensus 166 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (595)
T 2yl4_A 166 TFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFAR 245 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888777777777777777888878889999999999999999999999999999999999999888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 005302 405 GFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSD 484 (703)
Q Consensus 405 ~~~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~ 484 (703)
.....+..++..+..++++++|++++.+|.+|+|.+++++.|...+..++..+...+..+.++..+.+|+.++++.+++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 325 (595)
T 2yl4_A 246 AGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKL 325 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 77777777777777888899999999999999999999999999999999999999999999999999999999987654
Q ss_pred ccccccccccCCCCc-EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECC
Q 005302 485 QFMSKGKKLQRLMGR-IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG 563 (703)
Q Consensus 485 ~~~~~~~~~~~~~g~-I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG 563 (703)
+........++..+. |+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+|+|+|+|+|++|+|.+||
T Consensus 326 ~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g 405 (595)
T 2yl4_A 326 PFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDG 405 (595)
T ss_dssp CSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETT
T ss_pred CCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECC
Confidence 311111111223567 9999999999854235799999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCC--CCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCC
Q 005302 564 FPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQ--DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLS 639 (703)
Q Consensus 564 ~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~--~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LS 639 (703)
+|+++++.+++|++||||+||+.+|++||+|||.++.+. +.++++++++++.++++|+++++|+||||.+|+ .+||
T Consensus 406 ~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LS 485 (595)
T 2yl4_A 406 HDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLS 485 (595)
T ss_dssp EETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCC
T ss_pred EEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCC
Confidence 999999999999999999999999999999999998652 278999999999999999999999999999998 5999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC---CcEEEEecchhH
Q 005302 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN---GLLVKSLHFLSL 695 (703)
Q Consensus 640 GGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~---~~~~~~~~~~~~ 695 (703)
||||||++|||||+++|+|||||||||+||+++|+.|.+.|+++ .-.+-.-|-++.
T Consensus 486 gGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 544 (595)
T 2yl4_A 486 GGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLST 544 (595)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 99999999999999999999999999999999999999999875 235556677654
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=9e-82 Score=727.05 Aligned_cols=524 Identities=27% Similarity=0.420 Sum_probs=460.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 168 RALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQS-SEIAVFHRNVRLLILLCVTSGICSGLRGCCFG 246 (703)
Q Consensus 168 ~~~~~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~-~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~ 246 (703)
+.+++++++.+++++.++.+++++++..++.++.|++++..++.... .+..........++++.++..++.+++.++..
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (582)
T 3b60_A 11 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCIS 90 (582)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999888888888899999999999988877654321 11111110111123334456677888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005302 247 IANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLC 326 (703)
Q Consensus 247 ~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lalv 326 (703)
..+.++..++|.++|+|++++|++||+++++||+++|+++|++.+++.+...+..++.++++.++++++++.++|+++++
T Consensus 91 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 170 (582)
T 3b60_A 91 WVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSII 170 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 327 TLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGF 406 (703)
Q Consensus 327 ~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~~ 406 (703)
+++.+|+++++...+.+..++..++..+..++..+.+.|+++|+++||+||.|+.+.++|.+..++..+...+..+....
T Consensus 171 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3b60_A 171 LVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSI 250 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888877777777777777777787889999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 005302 407 WNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQF 486 (703)
Q Consensus 407 ~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~ 486 (703)
...+..++..+..++++++|++++..|.+|+|.+++++.|...+..++..+...+.++..+..+.+|+.++++.+++.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 330 (582)
T 3b60_A 251 SDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE 330 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 88888888888888899999999999999999999999999999999999999999999999999999999998766431
Q ss_pred ccccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeC
Q 005302 487 MSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI 566 (703)
Q Consensus 487 ~~~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di 566 (703)
...+.++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+|+|+|+|+|++|+|.+||+|+
T Consensus 331 --~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 407 (582)
T 3b60_A 331 --GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL 407 (582)
T ss_dssp --CCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEET
T ss_pred --CCCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEc
Confidence 111222234679999999999743 25799999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHhhcceEEEccCCccccccHHHHhccCC-CCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHH
Q 005302 567 KEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGC-TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (703)
Q Consensus 567 ~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~-~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (703)
++++.+++|++||||+|||.+|++||+|||.++. + +.++++++++++.++++|+++++|+||||.+|+ .+||||||
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~ 486 (582)
T 3b60_A 408 REYTLASLRNQVALVSQNVHLFNDTVANNIAYARTE-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR 486 (582)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTS-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHH
T ss_pred cccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCC-CCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHH
Confidence 9999999999999999999999999999999986 4 678999999999999999999999999999998 49999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC---CcEEEEecchhH
Q 005302 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN---GLLVKSLHFLSL 695 (703)
Q Consensus 644 QRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~---~~~~~~~~~~~~ 695 (703)
||++|||||+++|+|||||||||+||+++|++|.+.|+++ .-.+-.-|-++.
T Consensus 487 qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 541 (582)
T 3b60_A 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST 541 (582)
T ss_dssp HHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGG
T ss_pred HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 9999999999999999999999999999999999999875 234556676653
No 8
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.3e-83 Score=800.32 Aligned_cols=514 Identities=28% Similarity=0.401 Sum_probs=424.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 171 GKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQS--SEI-AVFHRNVRLLILLCVTSGICSGLRGCCFGI 247 (703)
Q Consensus 171 ~~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~--~d~-~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~ 247 (703)
.+++.+.+++++.++.+++++++........+.++...+..... .+. .........+++++++..++.+++.++...
T Consensus 741 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~ 820 (1321)
T 4f4c_A 741 FEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGI 820 (1321)
T ss_dssp HHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555577777777766666655555444444444444322211 110 001111223344555677888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchhhcc--cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005302 248 ANMILVKRMRETLYSALLLQDISFFDS--ETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGL 325 (703)
Q Consensus 248 ~~~~l~~~lr~~lf~~Ll~lp~~~fe~--r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~Lal 325 (703)
.+.++..++|.++|+|++++|++||+. +++|++++|+++|++.+++.+...+..++.+++++++.++++++++|++++
T Consensus 821 ~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~l 900 (1321)
T 4f4c_A 821 ASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMAL 900 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHH
Confidence 999999999999999999999999986 679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 326 CTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYG 405 (703)
Q Consensus 326 v~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~~~ 405 (703)
++++++|++++...++.+..++......+..++....+.|+++|+++||+|+.|+.+.+++.+..+...+...+......
T Consensus 901 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 980 (1321)
T 4f4c_A 901 LIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQG 980 (1321)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888777655554443333334444467778889999999999999999999999999999998888887776676
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 005302 406 FWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQL--TKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPS 483 (703)
Q Consensus 406 ~~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l--~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e 483 (703)
........+..+..++++++|++++..|..+.+.+ ++++.+......++..+...+.++..+..+.+|+.++++.+++
T Consensus 981 ~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~ 1060 (1321)
T 4f4c_A 981 LSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISK 1060 (1321)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 66666666777777888999999999888776544 3334444444455666777888899999999999999998877
Q ss_pred CccccccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECC
Q 005302 484 DQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG 563 (703)
Q Consensus 484 ~~~~~~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG 563 (703)
.+......+.++..|.|+|+||+|+||++++.+||+|+||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||
T Consensus 1061 ~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG 1140 (1321)
T 4f4c_A 1061 IDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDG 1140 (1321)
T ss_dssp SCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETT
T ss_pred CCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECC
Confidence 54222223334557899999999999976666899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHhhcceEEEccCCccccccHHHHhccCC-CCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCCh
Q 005302 564 FPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGC-TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSG 640 (703)
Q Consensus 564 ~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~-~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSG 640 (703)
+|++++++++||++||+|||||+||+|||||||+||. |+++++|++++||+.|++||||++||+||||.||| .+|||
T Consensus 1141 ~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSg 1220 (1321)
T 4f4c_A 1141 SEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSG 1220 (1321)
T ss_dssp EETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCH
T ss_pred EEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCH
Confidence 9999999999999999999999999999999999994 45799999999999999999999999999999999 49999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 641 GQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 641 GQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
||||||||||||+|||+||||||||||||++||+.|+++|++.-
T Consensus 1221 GQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~ 1264 (1321)
T 4f4c_A 1221 GQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR 1264 (1321)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999998764
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1e-79 Score=763.81 Aligned_cols=525 Identities=30% Similarity=0.446 Sum_probs=451.5
Q ss_pred HHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh---------------------HHHHHHHHHH
Q 005302 170 LGKMWDLVS-KDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEI---------------------AVFHRNVRLL 227 (703)
Q Consensus 170 ~~~l~~~~~-~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~d~---------------------~~~~~~~~ll 227 (703)
+.++++|.. .++..++.+++++++..+...+.|.+++..++.....+. ........++
T Consensus 35 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (1284)
T 3g5u_A 35 VLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYY 114 (1284)
T ss_dssp THHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHHHH
Confidence 345566664 356667777777777777666777666555432110000 0001112233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 228 ILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVL 307 (703)
Q Consensus 228 ~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l 307 (703)
++++++..++.+++.++..+.+.++..++|.++|+|++++|++||+++++|++++|+++|++.+++.+...+..++.+++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~ 194 (1284)
T 3g5u_A 115 TGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMA 194 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHH
Q 005302 308 QGTGALIYLIVLSWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYK 387 (703)
Q Consensus 308 ~~i~~li~m~~~s~~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~ 387 (703)
++++.+++++.++|++++++++.+|+++++..++.+..++..+..++..++.++.+.|+++|+++||+||.|+++.++|.
T Consensus 195 ~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~ 274 (1284)
T 3g5u_A 195 TFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYN 274 (1284)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999999988888888888888777788789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 388 HWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQS 467 (703)
Q Consensus 388 ~~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~ 467 (703)
+..++..+...+..........+..++..+..++++|+|++++..|.+|+|.+++++.+...+..++..+...+..+..+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (1284)
T 3g5u_A 275 NNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANA 354 (1284)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888887777777777777888888899999999999999999999988888778888899999999999999
Q ss_pred HHHHHHHHHhhhcCCCCccc-cccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHH
Q 005302 468 VGASEKVFQLMDLMPSDQFM-SKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVN 546 (703)
Q Consensus 468 ~~~~~Ri~dil~~~~e~~~~-~~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlk 546 (703)
..+++|+.++++.+++.... ..+..+++..|.|+++||+|+|+++++.++|+|+||+|+|||++|||||||||||||++
T Consensus 355 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ 434 (1284)
T 3g5u_A 355 RGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQ 434 (1284)
T ss_dssp HHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999999987764321 11222233467899999999998654468999999999999999999999999999999
Q ss_pred HHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCC
Q 005302 547 LLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLP 626 (703)
Q Consensus 547 LLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP 626 (703)
+|+|+|+|++|+|.+||+|+++++.+++|++||+|+|||+||++||+|||.+|.+ +.++++++++++.++++|+|.++|
T Consensus 435 ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~~~~~~i~~l~ 513 (1284)
T 3g5u_A 435 LMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE-DVTMDEIEKAVKEANAYDFIMKLP 513 (1284)
T ss_dssp HTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS-SCCHHHHHHHHHHTTCHHHHHHST
T ss_pred HHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999976 789999999999999999999999
Q ss_pred CCcccccCC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC---CcEEEEecchhH
Q 005302 627 SGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN---GLLVKSLHFLSL 695 (703)
Q Consensus 627 ~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~---~~~~~~~~~~~~ 695 (703)
+||||.+|| .+|||||||||+|||||+++|+|||||||||+||+++|+.|++++++. .-.+-.-|-++.
T Consensus 514 ~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 587 (1284)
T 3g5u_A 514 HQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLST 587 (1284)
T ss_dssp TGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHH
T ss_pred ccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 999999999 499999999999999999999999999999999999999999998653 234455566653
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.2e-73 Score=704.51 Aligned_cols=524 Identities=31% Similarity=0.420 Sum_probs=439.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch---hh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 171 GKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSS---EI--AVFHRNVRLLILLCVTSGICSGLRGCCF 245 (703)
Q Consensus 171 ~~l~~~~~~~~~~l~~~~~~~ll~~l~~l~~P~~~~~~i~~~~~~---d~--~~~~~~~~ll~~l~~~~~~~~~lr~~~~ 245 (703)
.+++++.+++++.++.+++++++..++....|.++...+...... +. ........++++++++..++.+++.++.
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 773 (1284)
T 3g5u_A 694 WRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTF 773 (1284)
T ss_dssp THHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777766666666655443221110 10 0111112233344455667778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhc--ccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005302 246 GIANMILVKRMRETLYSALLLQDISFFD--SETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPL 323 (703)
Q Consensus 246 ~~~~~~l~~~lr~~lf~~Ll~lp~~~fe--~r~~Gdi~sR~~sdi~~i~~~l~~~l~~~i~~~l~~i~~li~m~~~s~~L 323 (703)
...+.++..++|..+|+|++++|++||+ ++++|++++|+++|++.+++.+...+..++.++++.++.+++++.++|++
T Consensus 774 ~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l 853 (1284)
T 3g5u_A 774 GKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQL 853 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 324 GLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAA 403 (703)
Q Consensus 324 alv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~r~~~~ 403 (703)
++++++.+|+++++..+..++.+.......+..++....+.|+++|+++||+|+.|+.+.++|.+..+...+...+...+
T Consensus 854 ~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1284)
T 3g5u_A 854 TLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHV 933 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988877666666666665555666677788999999999999999999999999999998888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 005302 404 YGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPS 483 (703)
Q Consensus 404 ~~~~~~~~~~l~~~~~iiil~~g~~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e 483 (703)
.+....+...+..+..++++|+|++++..|.+++|.++++..+......++..+...+.++..+..+.+|+.++++.+++
T Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~ 1013 (1284)
T 3g5u_A 934 FGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPE 1013 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 77777777777778888999999999999999999999988888777777777777777778889999999999998776
Q ss_pred Ccccc-ccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEEC
Q 005302 484 DQFMS-KGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILID 562 (703)
Q Consensus 484 ~~~~~-~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~id 562 (703)
..... .+..+++..|.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+|
T Consensus 1014 ~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~ 1093 (1284)
T 3g5u_A 1014 IDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLD 1093 (1284)
T ss_dssp SSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESS
T ss_pred ccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEEC
Confidence 43211 11222234678999999999986544579999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCC-CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCC
Q 005302 563 GFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLS 639 (703)
Q Consensus 563 G~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LS 639 (703)
|+|+++++.+++|++||||+|||.+|++||+|||+++++ ...++++++++++.+++++++.++|+||||.+|| .+||
T Consensus 1094 g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LS 1173 (1284)
T 3g5u_A 1094 GKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLS 1173 (1284)
T ss_dssp SSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSC
T ss_pred CEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccC
Confidence 999999999999999999999999999999999999975 2478999999999999999999999999999999 4999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc---EEEEecchh
Q 005302 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL---LVKSLHFLS 694 (703)
Q Consensus 640 GGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~---~~~~~~~~~ 694 (703)
||||||++|||||+++|+|||||||||+||+++|+.|+++|++..+ .+-.-|=++
T Consensus 1174 gGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~ 1231 (1284)
T 3g5u_A 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLS 1231 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHH
Confidence 9999999999999999999999999999999999999999986533 344446554
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.9e-56 Score=472.95 Aligned_cols=231 Identities=39% Similarity=0.563 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCccccccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcH
Q 005302 462 SSLMQSVGASEKVFQLMDLMPSDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGK 541 (703)
Q Consensus 462 ~~l~~~~~~~~Ri~dil~~~~e~~~~~~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGK 541 (703)
.+++.+..+++|++++++.+++..........+...+.|+++||+|+|+++ .++|+|+||+|++||++||||||||||
T Consensus 16 ~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGK 93 (306)
T 3nh6_A 16 PRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG--RETLQDVSFTVMPGQTLALVGPSGAGK 93 (306)
T ss_dssp ---CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTT--CEEEEEEEEEECTTCEEEEESSSCHHH
T ss_pred hhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCC--CceeeeeeEEEcCCCEEEEECCCCchH
Confidence 455667778999999998766533111112222235689999999999753 579999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHH
Q 005302 542 STLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDF 621 (703)
Q Consensus 542 STLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~ 621 (703)
|||+|+|+|+|+|++|+|.+||+|+.+++..++|++||||+|++.+|++||+|||.++.+ ..++++++++++.++++++
T Consensus 94 STLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~-~~~~~~~~~~~~~~~l~~~ 172 (306)
T 3nh6_A 94 STILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV-TAGNDEVEAAAQAAGIHDA 172 (306)
T ss_dssp HHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST-TCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc-cCCHHHHHHHHHHhCcHHH
Confidence 999999999999999999999999999999999999999999999999999999999976 7889999999999999999
Q ss_pred HHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC---CcEEEEecchhH
Q 005302 622 IMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN---GLLVKSLHFLSL 695 (703)
Q Consensus 622 I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~---~~~~~~~~~~~~ 695 (703)
+..+|+||+|.+|+ .+|||||||||+|||||+++|+|||||||||+||+++|+.|.+.|+++ .-.+-.-|-++.
T Consensus 173 i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLST 251 (306)
T ss_dssp HHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHH
T ss_pred HHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHH
Confidence 99999999999999 499999999999999999999999999999999999999999998764 334555676654
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=8e-48 Score=398.00 Aligned_cols=196 Identities=46% Similarity=0.682 Sum_probs=179.5
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
.+|+++||+|+|+++ +.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+|+.+++...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 369999999999532 2579999999999999999999999999999999999999999999999999999988889999
Q ss_pred eEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCC
Q 005302 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD 655 (703)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~ 655 (703)
||||+|++.+|++|++|||.++.+ ..+++++.++++.+++.+++..+|.||++.+++ .+||||||||++|||||+++
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCccccccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999854 567889999999999999999999999999998 59999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhC---CcEEEEecchhH
Q 005302 656 PTILILDEATSALDAESEHNIKVATLSN---GLLVKSLHFLSL 695 (703)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~al~~~---~~~~~~~~~~~~ 695 (703)
|++||||||||+||+++++.|.+.|+++ .-.+-+-|-+..
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~ 206 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLST 206 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGG
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence 9999999999999999999999999875 235556676553
No 13
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.7e-46 Score=391.59 Aligned_cols=198 Identities=43% Similarity=0.692 Sum_probs=178.7
Q ss_pred CCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhc
Q 005302 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRG 576 (703)
Q Consensus 497 ~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~ 576 (703)
.+.|+++||+|+|++.++.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.|+.+.+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 35699999999997521257999999999999999999999999999999999999999999999999999888888999
Q ss_pred ceEEEccCCccccccHHHHhccCCCCCCCH-HHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhc
Q 005302 577 RIGFVGQEPKLFRMDISSNISYGCTQDIKQ-QDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 577 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~-e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~ 653 (703)
+||||+|++.+|++|++|||.++.. ..++ +++.++++.+++++++..+|+|+++.++. .+||||||||++|||||+
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~ 172 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLT-RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI 172 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCS-SCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT
T ss_pred cEEEEecCCccccccHHHHHhhhcc-cCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999854 4444 77888889999999999999999999887 599999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
++|++||||||||+||+++++.|.+.|+++. -++-.-|-+..
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~ 219 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL 219 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH
Confidence 9999999999999999999999999998873 25566676654
No 14
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.3e-46 Score=391.93 Aligned_cols=196 Identities=39% Similarity=0.587 Sum_probs=177.8
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
+.|+++||+|+|++....++|+|+||+|++||++||+||||||||||+|+|+|+++| +|+|.+||+|+.+.+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999753224699999999999999999999999999999999999987 8999999999998888889999
Q ss_pred eEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCC
Q 005302 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD 655 (703)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~ 655 (703)
||||+|++.+|++|++|||.++.. ..+++++.++++.+++.+++..+|+|++|.+++ .+||||||||++|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 173 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKL-DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKD 173 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCcccccCHHHHHhccCC-CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcC
Confidence 999999999999999999999854 556788999999999999999999999999987 59999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 656 PTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
|+|||||||||+||+++++.+.+.|+++. -.+-.-|-+..
T Consensus 174 p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~ 216 (260)
T 2ghi_A 174 PKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLST 216 (260)
T ss_dssp CSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH
Confidence 99999999999999999999999998753 34555676543
No 15
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.9e-47 Score=392.92 Aligned_cols=193 Identities=39% Similarity=0.626 Sum_probs=177.4
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++||+|+|++ +.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+|+.+.+...+|++||
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999953 257999999999999999999999999999999999999999999999999999888788899999
Q ss_pred EEccCCccccccHHHHhccC-CCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCC
Q 005302 580 FVGQEPKLFRMDISSNISYG-CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDP 656 (703)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g-~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p 656 (703)
||+|++.+|++|++|||.++ .+ ..+++++.++++.+++++++.++|.|++|.+++ .+||||||||++|||||+++|
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p 158 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEG-DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP 158 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTS-CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEcCCCccccccHHHHHhhhccC-CCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998 44 567889999999999999999999999999998 599999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhC---CcEEEEecchhH
Q 005302 657 TILILDEATSALDAESEHNIKVATLSN---GLLVKSLHFLSL 695 (703)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~al~~~---~~~~~~~~~~~~ 695 (703)
++|+||||||+||+++++.+.+.|+++ .-++-+-|-+..
T Consensus 159 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~ 200 (243)
T 1mv5_A 159 KILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLST 200 (243)
T ss_dssp SEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHH
Confidence 999999999999999999999998765 235666777654
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.8e-45 Score=397.73 Aligned_cols=185 Identities=28% Similarity=0.437 Sum_probs=173.6
Q ss_pred CCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhh
Q 005302 496 LMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLR 575 (703)
Q Consensus 496 ~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR 575 (703)
..+.|+++||+|+|+++ +.++|+|+||+|++||.++|+||||||||||+++|+|+++ ++|+|.+||+|+.+++...+|
T Consensus 16 ~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 34679999999999743 3679999999999999999999999999999999999998 999999999999999999999
Q ss_pred cceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhc
Q 005302 576 GRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 576 ~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~ 653 (703)
+.||||+|++.+|++|++|||.++. ...+++++++++.+++++++.+.|.+|+|.+++ .+||||||||++|||||+
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~--~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~ 171 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNA--AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL 171 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTC--CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCcccCccCHHHHhhhcc--ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999763 457899999999999999999999999999998 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
++|++|+||||||+||+++++++.+.|++..
T Consensus 172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~ 202 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQAF 202 (390)
T ss_dssp TTCCEEEEESHHHHSCHHHHHHHHHHHHTTT
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998764
No 17
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.6e-43 Score=360.22 Aligned_cols=182 Identities=25% Similarity=0.388 Sum_probs=162.2
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
+.|+++||+|+|+++ +.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+|| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999743 35799999999999999999999999999999999999999999999998 4
Q ss_pred eEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCC
Q 005302 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD 655 (703)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~ 655 (703)
|+||+|++.+|++|++|||.++. ..++.+..++++..++.+++..+|.+++|.+++ .+||||||||++|||||+++
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~ 148 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 148 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTS--CCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEEecCCcccCCCHHHHhhccC--CcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999984 234566777888889999999999999999987 59999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHH-HhC---CcEEEEecchhH
Q 005302 656 PTILILDEATSALDAESEHNIKVAT-LSN---GLLVKSLHFLSL 695 (703)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~al-~~~---~~~~~~~~~~~~ 695 (703)
|++||||||||+||+++++.+.+.+ ++. .-.+=.-|-+..
T Consensus 149 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~ 192 (229)
T 2pze_A 149 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 192 (229)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHH
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHH
Confidence 9999999999999999999999874 443 235566677654
No 18
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.5e-43 Score=361.09 Aligned_cols=181 Identities=28% Similarity=0.444 Sum_probs=160.3
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+|+|++. +.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+|| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999742 25799999999999999999999999999999999999999999999999 49
Q ss_pred EEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCC
Q 005302 579 GFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDP 656 (703)
Q Consensus 579 ~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p 656 (703)
|||+|++.+|+.|++|||.++.. .++++..++.+.+++.+++..+|.|++|.+++ .+||||||||++|||||+++|
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 146 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ--LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 146 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC--CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEcCCCcCCCcCHHHHhhCccc--cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999843 34556777888888989999999999999987 599999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHH---hC---CcEEEEecchhH
Q 005302 657 TILILDEATSALDAESEHNIKVATL---SN---GLLVKSLHFLSL 695 (703)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~al~---~~---~~~~~~~~~~~~ 695 (703)
++||||||||+||+++++.+.+.|. +. .-.+=.-|-+..
T Consensus 147 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~ 191 (237)
T 2cbz_A 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSY 191 (237)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTT
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHH
Confidence 9999999999999999999999984 22 234555676543
No 19
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.9e-43 Score=360.32 Aligned_cols=187 Identities=32% Similarity=0.453 Sum_probs=152.1
Q ss_pred EEEEEEEEEcCCCC-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHh----
Q 005302 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL---- 574 (703)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~l---- 574 (703)
|+++||+|+|+++. ..++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||.|+.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 2469999999999999999999999999999999999999999999999999999987664
Q ss_pred hcceEEEccCCccccc-cHHHHhccCC----CCCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHH
Q 005302 575 RGRIGFVGQEPKLFRM-DISSNISYGC----TQDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (703)
Q Consensus 575 R~~I~~V~Qd~~LF~g-TI~eNI~~g~----~~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (703)
|+.||||+|++.+|.+ |++||+.++. ....+ .+++.++++..++.+... +.. ...||||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~--~~~LSgGq~QR 153 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFA------NHK--PNQLSGGQQQR 153 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGT------TCC--GGGSCHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhh------hCC--hhhCCHHHHHH
Confidence 4579999999999987 9999998631 00122 233445555555432110 111 14799999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchh
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLS 694 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~ 694 (703)
++|||||+++|++||||||||+||+.+.+.+.+.|+++. -++=.-|-+.
T Consensus 154 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 154 VAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 999999999999999999999999999999999987652 3566778775
No 20
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7.7e-42 Score=351.75 Aligned_cols=190 Identities=19% Similarity=0.336 Sum_probs=153.8
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHh-hcc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL-RGR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~l-R~~ 577 (703)
-|+++||+|+|++ .++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||+++.+.+...+ |+.
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 3899999999963 469999999999999999999999999999999999999999999999999988876655 556
Q ss_pred eEEEccCCccccc-cHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcC
Q 005302 578 IGFVGQEPKLFRM-DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILR 654 (703)
Q Consensus 578 I~~V~Qd~~LF~g-TI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r 654 (703)
||||+|++.+|.+ |++||+.++.....+.++..+.+ .+.++.++ |++...+. .+||||||||++|||||++
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999987 99999998741122222222222 22333332 33333443 5899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHHH
Q 005302 655 DPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLYV 697 (703)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~~ 697 (703)
+|++||||||||+||+++.+.+.+.|+++. -++=+-|-+....
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~ 203 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGAL 203 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHH
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 999999999999999999999999987652 3566778765433
No 21
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4.5e-42 Score=371.57 Aligned_cols=194 Identities=28% Similarity=0.407 Sum_probs=161.4
Q ss_pred CcEEEEEEEEEcCCCC-CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHH---
Q 005302 498 GRIDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW--- 573 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~--- 573 (703)
.-|+++||+++|+++. ..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+|+..++...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999997531 246999999999999999999999999999999999999999999999999999988655
Q ss_pred hhcceEEEccCCccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005302 574 LRGRIGFVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (703)
Q Consensus 574 lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (703)
+|+.||||+|++.+|.. |++|||.++.. ...+ .+++.++++..++.+...+.| .+||||||||++
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~---------~~LSGGqkQRVa 173 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP---------SNLSGGQKQRVA 173 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT---------TTSCHHHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHH
Confidence 47899999999999875 99999987521 0122 345677777777765433332 479999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHHHHhh
Q 005302 648 IARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLYVLIC 700 (703)
Q Consensus 648 LARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~~~~~ 700 (703)
|||||+.+|++||||||||+||+++.+.|.+.|++++ -.+=.-|-+..-.-+|
T Consensus 174 IArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~a 231 (366)
T 3tui_C 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRIC 231 (366)
T ss_dssp HHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHC
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC
Confidence 9999999999999999999999999999999998763 3566778776544344
No 22
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.4e-42 Score=362.07 Aligned_cols=186 Identities=31% Similarity=0.489 Sum_probs=152.7
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC--CCChHHhhc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK--EVDIKWLRG 576 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~--~i~~~~lR~ 576 (703)
-|+++||+|+|++. .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+|+. +.+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 48999999999753 46999999999999999999999999999999999999999999999999994 334567899
Q ss_pred ceEEEccCC--ccccccHHHHhccCCC-CCCCH----HHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005302 577 RIGFVGQEP--KLFRMDISSNISYGCT-QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (703)
Q Consensus 577 ~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~----e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (703)
.||||+|++ .+|..|++|||.++.. ...+. +++.++++..++.++..+.| .+||||||||++||
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPT---------HCLSFGQKKRVAIA 155 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBG---------GGSCHHHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCc---------ccCCHHHHHHHHHH
Confidence 999999987 6899999999988631 12233 34555666655543222111 47999999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 650 RAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 650 RAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
|||+.+|++||||||||+||+.+.+.+.+.|+++. -++=+-|-+..
T Consensus 156 raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~ 206 (275)
T 3gfo_A 156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI 206 (275)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH
Confidence 99999999999999999999999999999987654 25556676543
No 23
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=9.3e-42 Score=347.61 Aligned_cols=185 Identities=30% Similarity=0.386 Sum_probs=151.3
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHH---hh
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW---LR 575 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~---lR 575 (703)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999963 47999999999999999999999999999999999999999999999999998877543 34
Q ss_pred -cceEEEccCCcccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005302 576 -GRIGFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (703)
Q Consensus 576 -~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (703)
++||||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.++..+.| .+||||||||++|
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qrv~l 151 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP---------YELSGGEQQRVAI 151 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG---------GGSCHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHH
Confidence 78999999999987 599999987521 0111 234555555555433211111 4799999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
||||+.+|++||||||||+||+++.+.+.+.|+++. -++=+-|-+..
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 202 (224)
T 2pcj_A 152 ARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL 202 (224)
T ss_dssp HHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 999999999999999999999999999999987652 35667787654
No 24
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.1e-41 Score=352.90 Aligned_cols=190 Identities=32% Similarity=0.443 Sum_probs=155.8
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC--CCChHHhhc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK--EVDIKWLRG 576 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~--~i~~~~lR~ 576 (703)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+|+. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999963 46999999999999999999999999999999999999999999999999985 345567788
Q ss_pred ceEEEccCCccccc-cHHHHhccCC--CCCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005302 577 RIGFVGQEPKLFRM-DISSNISYGC--TQDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (703)
Q Consensus 577 ~I~~V~Qd~~LF~g-TI~eNI~~g~--~~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (703)
.||||+|++.+|.. |++|||.++. ....+ ++++.++++..++.++..+.| .+||||||||++||
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGqkQRv~lA 171 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP---------DSLSGGQAQRVAIA 171 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCh---------hhCCHHHHHHHHHH
Confidence 99999999999987 9999998852 11222 344566666666644322111 47999999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHHHHhh
Q 005302 650 RAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLYVLIC 700 (703)
Q Consensus 650 RAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~~~~~ 700 (703)
|||+.+|++||||||||+||+.+.+.+.+.|+++. -++-+-|-+...--+|
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~ 226 (263)
T 2olj_A 172 RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVG 226 (263)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhC
Confidence 99999999999999999999999999999987652 3566778766543333
No 25
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3.9e-41 Score=351.66 Aligned_cols=184 Identities=31% Similarity=0.445 Sum_probs=156.6
Q ss_pred EEEEEEEEEcCCCCC--cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 500 IDFVDVSFRYSSREM--VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~--~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
|+++||+|+|+.+.. .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999972111 4699999999999999999999999999999999999999999999999998752 67889
Q ss_pred eEEEccCC--ccccccHHHHhccCCC----CCCCHHHHHHHHHHhchH--HHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005302 578 IGFVGQEP--KLFRMDISSNISYGCT----QDIKQQDIEWAAKQAYAH--DFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (703)
Q Consensus 578 I~~V~Qd~--~LF~gTI~eNI~~g~~----~~~~~e~i~~aa~~A~l~--d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (703)
||||+|++ .++..|++|||.++.. .+..++++.++++..++. ++..+.| .+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---------~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP---------FFLSGGEKRRVAIA 150 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG---------GGSCHHHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh---------hhCCHHHHHHHHHH
Confidence 99999996 6788999999998632 123357788999999987 6655443 47999999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 650 RAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 650 RAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
|||+++|++||||||||+||+++.+.+.+.|+++. -++=+-|-+..
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~ 200 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET 200 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 99999999999999999999999999999987652 35556676543
No 26
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.1e-41 Score=352.36 Aligned_cols=190 Identities=27% Similarity=0.366 Sum_probs=161.2
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
-|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||+|+.+.+...+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5899999999973 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcc-ccccHHHHhccCCC---CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcC
Q 005302 579 GFVGQEPKL-FRMDISSNISYGCT---QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR 654 (703)
Q Consensus 579 ~~V~Qd~~L-F~gTI~eNI~~g~~---~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r 654 (703)
+||+|++.+ |..|++||+.++.. ....++++.++++..++.+...+ .+ .+||||||||++|||||++
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~--~~LSgGq~QRv~iAraL~~ 158 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-------DY--RVLSGGEQQRVQLARVLAQ 158 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS-------BG--GGCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcC-------Cc--ccCCHHHHHHHHHHHHHhc
Confidence 999999987 77899999998742 12234567777777665433211 11 4799999999999999999
Q ss_pred ------CCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHHHHhh
Q 005302 655 ------DPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLYVLIC 700 (703)
Q Consensus 655 ------~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~~~~~ 700 (703)
+|++||||||||+||+.+.+.+.+.|+++. -++=.-|-+..-.-+|
T Consensus 159 ~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~ 215 (266)
T 4g1u_C 159 LWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYA 215 (266)
T ss_dssp TCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHC
T ss_pred ccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhC
Confidence 999999999999999999999999887652 3566778776644333
No 27
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3e-41 Score=350.41 Aligned_cols=187 Identities=23% Similarity=0.349 Sum_probs=156.8
Q ss_pred CCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhc
Q 005302 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRG 576 (703)
Q Consensus 497 ~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~ 576 (703)
.+.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++.+ ....+|+
T Consensus 13 ~~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~ 88 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88 (256)
T ss_dssp -CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHT
T ss_pred CCeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhh
Confidence 457999999999963 579999999999999999999999999999999999999999999999999976 5667889
Q ss_pred ceEEEccCCccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005302 577 RIGFVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (703)
Q Consensus 577 ~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (703)
.||||+|++.+|.+ |++||+.++.. ...+ ++++.++++..++.++..+. + .+||||||||++|||
T Consensus 89 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-------~--~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDR-------V--STYSKGMVRKLLIAR 159 (256)
T ss_dssp TEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSB-------G--GGCCHHHHHHHHHHH
T ss_pred cEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCC-------h--hhCCHHHHHHHHHHH
Confidence 99999999999887 99999987521 0112 24567777777776543321 1 479999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHH
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLY 696 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~ 696 (703)
||+++|++||||||||+||+++.+.+.+.|+++. -++=+-|-+...
T Consensus 160 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~ 209 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEV 209 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred HHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH
Confidence 9999999999999999999999999999987652 355666766543
No 28
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=4.4e-41 Score=349.57 Aligned_cols=187 Identities=25% Similarity=0.368 Sum_probs=150.4
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHhhcc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI-KWLRGR 577 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~-~~lR~~ 577 (703)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++.+.+. +.+|+.
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999987764 446788
Q ss_pred eEEEccCCcccc-ccHHHHhccCCCC---C-----------CCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCCh
Q 005302 578 IGFVGQEPKLFR-MDISSNISYGCTQ---D-----------IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSG 640 (703)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~~---~-----------~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSG 640 (703)
||||+|++.+|. .|++|||.++... . .+.++. ...+.+.++.+ |++..... .+|||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-----VEKAFKILEFL--KLSHLYDRKAGELSG 156 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHH-----HHHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHH-----HHHHHHHHHHc--CCchhhCCCchhCCH
Confidence 999999999986 6999999986321 1 111111 11223334433 34443343 48999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 641 GQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 641 GQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
|||||++|||||+++|++||||||||+||+++.+.+.+.|+++. -++=+-|-+..
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 215 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI 215 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 99999999999999999999999999999999999999987652 35556676543
No 29
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=6.8e-41 Score=349.08 Aligned_cols=190 Identities=29% Similarity=0.407 Sum_probs=157.7
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC----------
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE---------- 568 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~---------- 568 (703)
-|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||.++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4899999999963 469999999999999999999999999999999999999999999999999862
Q ss_pred CCh---HHhhcceEEEccCCccccc-cHHHHhccCC--CCCCC----HHHHHHHHHHhchHHH-HHcCCCCcccccCCCC
Q 005302 569 VDI---KWLRGRIGFVGQEPKLFRM-DISSNISYGC--TQDIK----QQDIEWAAKQAYAHDF-IMSLPSGYETLVDDDL 637 (703)
Q Consensus 569 i~~---~~lR~~I~~V~Qd~~LF~g-TI~eNI~~g~--~~~~~----~e~i~~aa~~A~l~d~-I~~LP~GydT~vGe~~ 637 (703)
++. ..+|+.||||+|++.+|.. |++|||.++. ....+ ++++.++++..++.++ ..+.| .+
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---------~~ 153 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP---------VH 153 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG---------GG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCc---------cc
Confidence 443 3568889999999999887 9999998842 11122 3457778888887766 33322 46
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHHHHhh
Q 005302 638 LSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLYVLIC 700 (703)
Q Consensus 638 LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~~~~~ 700 (703)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. -++=+-|-+...--+|
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~ 220 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVS 220 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 99999999999999999999999999999999999999999987642 3666778776543333
No 30
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4e-41 Score=353.77 Aligned_cols=184 Identities=26% Similarity=0.352 Sum_probs=151.0
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC--CCChHHhhc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK--EVDIKWLRG 576 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~--~i~~~~lR~ 576 (703)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++. +.+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 4999999999963 47999999999999999999999999999999999999999999999999998 777888999
Q ss_pred ceEEEccCCcc-ccc--cHHHHhccCCCC------CCC---HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHH
Q 005302 577 RIGFVGQEPKL-FRM--DISSNISYGCTQ------DIK---QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQ 644 (703)
Q Consensus 577 ~I~~V~Qd~~L-F~g--TI~eNI~~g~~~------~~~---~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQ 644 (703)
+||||+|++.+ |.. |++|||.++... ..+ .+++.++++..++.++.. ..+ .+|||||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~~~--~~LSgGqkq 168 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ-------QYI--GYLSTGEKQ 168 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTT-------SBG--GGSCHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhc-------CCh--hhCCHHHHH
Confidence 99999999875 555 999999986310 112 234555555555543221 111 479999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cE--EEEecchh
Q 005302 645 RIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LL--VKSLHFLS 694 (703)
Q Consensus 645 RIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~--~~~~~~~~ 694 (703)
|++|||||+++|++||||||||+||+++.+.+.+.|+++. -+ +=+-|-+.
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~ 224 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE 224 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH
Confidence 9999999999999999999999999999999999987653 24 55667654
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=4.4e-41 Score=340.14 Aligned_cols=176 Identities=25% Similarity=0.436 Sum_probs=148.9
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
..|+++||+++|+ + ++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||.++. .+|+.
T Consensus 9 ~~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~ 79 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGK 79 (214)
T ss_dssp CEEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGG
T ss_pred ceEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCc
Confidence 3599999999996 3 6999999999999999999999999999999999999999999999999986 36889
Q ss_pred eEEEccCCccccc-cHHHHhccCCC--C-CCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHH
Q 005302 578 IGFVGQEPKLFRM-DISSNISYGCT--Q-DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARA 651 (703)
Q Consensus 578 I~~V~Qd~~LF~g-TI~eNI~~g~~--~-~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARA 651 (703)
|+||+|++.+|.+ |++||+.++.. . ..+++++.++++..++ +.. +. .+||||||||++||||
T Consensus 80 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~-~~~~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 80 IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV-----------LDL-KKKLGELSQGTIRRVQLAST 147 (214)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTC-----------CCT-TSBGGGSCHHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCC-----------CcC-CCChhhCCHHHHHHHHHHHH
Confidence 9999999999987 99999988521 0 1235667777666554 333 33 4899999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchh
Q 005302 652 ILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLS 694 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~ 694 (703)
|+++|++||||||||+||+++.+.+.+.|+++. -.+=+-|-+.
T Consensus 148 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~ 194 (214)
T 1sgw_A 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL 194 (214)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 999999999999999999999999999987653 2444556543
No 32
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.2e-40 Score=351.69 Aligned_cols=199 Identities=24% Similarity=0.368 Sum_probs=152.3
Q ss_pred HHHHhhhcCCCCccccccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 473 KVFQLMDLMPSDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 473 Ri~dil~~~~e~~~~~~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
|+.++++.+.++.. . .......+.|+++||+|.| .++|+|+||+|++||++||+||||||||||+|+|+|++
T Consensus 17 ~~~~~~~~~~~~~~-~--~~~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 17 GFGELFEKAKQNNN-N--RKTSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp HHHHHHHHCC--------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred HHHHHhcccccccc-c--ccccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 66677766554321 1 1111223469999999964 36999999999999999999999999999999999999
Q ss_pred CCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccc
Q 005302 553 EPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETL 632 (703)
Q Consensus 553 ~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~ 632 (703)
+|++|+|.+|| +|+||+|++.+|++|++|||. +. ..++.++.++++..++.+++..+|.+++|.
T Consensus 89 ~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~enl~-~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 152 (290)
T 2bbs_A 89 EPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENII-GV--SYDEYRYRSVIKACQLEEDISKFAEKDNIV 152 (290)
T ss_dssp CEEEEEEECCS-------------CEEEECSSCCCCSSBHHHHHH-TT--CCCHHHHHHHHHHTTCHHHHHTSTTGGGCB
T ss_pred CCCCcEEEECC-------------EEEEEeCCCccCcccHHHHhh-Cc--ccchHHHHHHHHHhChHHHHHhccccccch
Confidence 99999999998 499999999999999999999 53 234566777888889999999999999999
Q ss_pred cCC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHH-HhC---CcEEEEecchhH
Q 005302 633 VDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVAT-LSN---GLLVKSLHFLSL 695 (703)
Q Consensus 633 vGe--~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al-~~~---~~~~~~~~~~~~ 695 (703)
+++ .+||||||||++|||||+++|++||||||||+||+.+++.+.+.+ +++ .-++-.-|-+..
T Consensus 153 ~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~ 221 (290)
T 2bbs_A 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 221 (290)
T ss_dssp C----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHH
T ss_pred hcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHH
Confidence 997 599999999999999999999999999999999999999999874 333 235556676654
No 33
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=7.8e-41 Score=361.61 Aligned_cols=185 Identities=32% Similarity=0.502 Sum_probs=152.8
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC--CChHHhhc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE--VDIKWLRG 576 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~--i~~~~lR~ 576 (703)
.|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||+|+.+ .+....++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999963 579999999999999999999999999999999999999999999999999932 23345678
Q ss_pred ceEEEccCCcccc-ccHHHHhccCCCC-----CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005302 577 RIGFVGQEPKLFR-MDISSNISYGCTQ-----DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (703)
Q Consensus 577 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~-----~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (703)
.||||+|++.||. .|++|||.|+... +..++++.++++..++.++..+.| ..||||||||++|||
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~---------~~LSGGq~QRValAr 151 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP---------HELSGGQQQRAALAR 151 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG---------GGSCHHHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHH
Confidence 9999999999997 5999999997421 112356777888877765544333 479999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC----C-cEEEEecchhH
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVATLSN----G-LLVKSLHFLSL 695 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~----~-~~~~~~~~~~~ 695 (703)
||+++|++|+||||||+||+.+...+.+.+.++ + -.+-.-|-+..
T Consensus 152 AL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~e 201 (359)
T 3fvq_A 152 ALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREE 201 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 999999999999999999999999998765432 2 34556666544
No 34
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.4e-40 Score=361.95 Aligned_cols=183 Identities=27% Similarity=0.433 Sum_probs=153.9
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+++|++ ..+|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||+++...+.. ++.|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 4899999999973 5799999999999999999999999999999999999999999999999999887754 5789
Q ss_pred EEEccCCccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 579 GFVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
|||+|++.||.. |++|||.|+.. ...+ ++++.++++..++.++..+.| .+||||||||++|||||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p---------~~LSGGqrQRVaiArAL 148 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTL 148 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG---------GGSCHHHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hHCCHHHHHHHHHHHHH
Confidence 999999999975 99999998631 1122 345667777777655433332 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
+++|++||||||||+||+.+..++.+.|+++. -.+-.-|-+..
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~e 196 (381)
T 3rlf_A 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196 (381)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 99999999999999999999999999987763 24555666544
No 35
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=4.3e-40 Score=356.57 Aligned_cols=183 Identities=29% Similarity=0.447 Sum_probs=155.6
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+||+++.+.+.. ++.|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 3899999999963 4699999999999999999999999999999999999999999999999999877643 6789
Q ss_pred EEEccCCccccc-cHHHHhccCCC-CCC----CHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 579 GFVGQEPKLFRM-DISSNISYGCT-QDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~-~~~----~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
|||+|++.+|.. |++|||.|+.. ... .++++.++++..++.++..+.| .+||||||||++|||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP---------TQLSGGQQQRVALARAL 148 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 999999999975 99999999732 011 1356777888887766544433 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
+++|++|+||||||+||+.+.+.+.+.|+++. -.+-.-|-+..
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAE 196 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 99999999999999999999999999887653 24556676554
No 36
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.4e-40 Score=356.62 Aligned_cols=186 Identities=27% Similarity=0.430 Sum_probs=155.1
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
..|+++||+++|++ +.++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||+++.+.+. .|+.
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 35999999999942 2469999999999999999999999999999999999999999999999999987553 4789
Q ss_pred eEEEccCCccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005302 578 IGFVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (703)
Q Consensus 578 I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (703)
||||+|++.+|.. |++|||.|+.. ...+ ++++.++++..++.++..+.| .+||||||||++||||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~---------~~LSGGq~QRvalArA 159 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP---------HELSGGQQQRVALARA 159 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc---------ccCCHHHHHHHHHHHH
Confidence 9999999999985 99999998621 0112 356777777777765544333 4799999999999999
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHH
Q 005302 652 ILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLY 696 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~ 696 (703)
|+++|++|+||||||+||+.+.+.+.+.|+++. -.+-.-|-+..-
T Consensus 160 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a 209 (355)
T 1z47_A 160 LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEA 209 (355)
T ss_dssp HTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH
Confidence 999999999999999999999999999887653 245566765443
No 37
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=6.2e-40 Score=337.49 Aligned_cols=180 Identities=26% Similarity=0.398 Sum_probs=148.3
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++||+++|++ +|+|+||+|++ |.+||+||||||||||+|+|+|+++|++|+|.+||+++.+.. .+|++||
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 689999999952 59999999999 999999999999999999999999999999999999997643 4578899
Q ss_pred EEccCCccccc-cHHHHhccCCCCCC----CHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcC
Q 005302 580 FVGQEPKLFRM-DISSNISYGCTQDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR 654 (703)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~~~~----~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r 654 (703)
||+|++.+|.. |++||+.++.. .. +++++.++++..++.++..+.| .+||||||||++|||||++
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLR-NVERVERDRRVREMAEKLGIAHLLDRKP---------ARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCT-TSCHHHHHHHHHHHHHTTTCTTTTTCCG---------GGSCHHHHHHHHHHHHHTT
T ss_pred EEcCCCccCCCCcHHHHHHHHHH-HcCCchHHHHHHHHHHHcCCHHHhcCCh---------hhCCHHHHHHHHHHHHHHc
Confidence 99999999987 99999999742 11 1344555555555433221111 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhHHH
Q 005302 655 DPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSLYV 697 (703)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~~~ 697 (703)
+|++||||||||+||+++.+.+.+.|+++ .-++=+-|-+....
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~ 191 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA 191 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 99999999999999999999999998765 23666778766543
No 38
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=7.1e-40 Score=338.78 Aligned_cols=180 Identities=22% Similarity=0.269 Sum_probs=156.8
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++||+|+ ++|+|+||+|++||.+||+||||||||||+|+|+|+++|+ |+|.+||.++.+.+...+|++||
T Consensus 5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 899999986 4899999999999999999999999999999999999999 99999999999888888999999
Q ss_pred EEccCCccccc-cHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCC-
Q 005302 580 FVGQEPKLFRM-DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT- 657 (703)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~- 657 (703)
||+|++.+|.+ |++||+.++.....+++++.++++..++.++..+ . -.+||||||||++|||||+++|+
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~--~~~LSgGq~qrv~lAraL~~~p~~ 147 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-------S--TNQLSGGEWQRVRLAAVVLQITPQ 147 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTS-------B--GGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcC-------C--hhhCCHHHHHHHHHHHHHHcCCCc
Confidence 99999999875 9999999974212347778888888887654322 1 14799999999999999999999
Q ss_pred ------EEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhHH
Q 005302 658 ------ILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSLY 696 (703)
Q Consensus 658 ------ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~~ 696 (703)
+||||||||+||+.+.+.+.+.|+++. -++=+-|-+...
T Consensus 148 ~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~ 196 (249)
T 2qi9_C 148 ANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHT 196 (249)
T ss_dssp TCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred CCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 999999999999999999999987652 356677876654
No 39
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=3.1e-40 Score=357.50 Aligned_cols=186 Identities=30% Similarity=0.406 Sum_probs=155.4
Q ss_pred cEEEEEEEEEcCCCCCcc--cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC---hHH
Q 005302 499 RIDFVDVSFRYSSREMVP--VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD---IKW 573 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~--vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~---~~~ 573 (703)
.|+++||+++|++ .+ +|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++.+.+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999963 45 999999999999999999999999999999999999999999999999986521 334
Q ss_pred hhcceEEEccCCccccc-cHHHHhccCCCC-CCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005302 574 LRGRIGFVGQEPKLFRM-DISSNISYGCTQ-DIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (703)
Q Consensus 574 lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~~-~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (703)
.|+.||||+|++.+|.. |++|||.|+... ..+ ++++.++++..++.++..+.| .+||||||||++
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~---------~~LSGGq~QRva 150 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP---------RELSGAQQQRVA 150 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHH
Confidence 67899999999999985 999999997421 122 345677777777766544333 479999999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHH
Q 005302 648 IARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLY 696 (703)
Q Consensus 648 LARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~ 696 (703)
|||||+++|++|+||||||+||+.+.+.+.+.|+++. -.+-.-|-+..-
T Consensus 151 lAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~ 204 (353)
T 1oxx_K 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADI 204 (353)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHH
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 9999999999999999999999999999999987653 355566765543
No 40
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.3e-40 Score=356.24 Aligned_cols=183 Identities=30% Similarity=0.457 Sum_probs=153.4
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+||+++.+.+.. ++.|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999963 4699999999999999999999999999999999999999999999999999877653 6789
Q ss_pred EEEccCCccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 579 GFVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
|||+|++.+|.. |++|||.|+.. ...+ ++++.++++..++.++..+.| .+||||||||++|||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP---------WQLSGGQQQRVAIARAL 148 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG---------GGSCHHHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh---------hhCCHHHHHHHHHHHHH
Confidence 999999999985 99999998621 0122 345667777776654433322 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
+++|++|+||||||+||+.+.+.+.+.|+++. -.+-.-|-+..
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAE 196 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 99999999999999999999999999987653 35556676554
No 41
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5e-40 Score=354.83 Aligned_cols=181 Identities=28% Similarity=0.449 Sum_probs=153.5
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
|+++||+++|++ . +|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+||+++.+.. ..|++||
T Consensus 2 l~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~--~~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS--PEKHDIA 75 (348)
T ss_dssp EEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC--HHHHTCE
T ss_pred EEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCc--hhhCcEE
Confidence 789999999962 5 999999999999999999999999999999999999999999999999998754 3578899
Q ss_pred EEccCCccccc-cHHHHhccCCC--CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCC
Q 005302 580 FVGQEPKLFRM-DISSNISYGCT--QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (703)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~--~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p 656 (703)
||+|++.+|.. |++|||.|+.. ....++++.++++..++.++..+.| .+||||||||++|||||+++|
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~---------~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP---------LTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG---------GGSCHHHHHHHHHHHHTTSCC
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHHHHHcCC
Confidence 99999999986 99999998621 0112377888888887765433332 479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 657 TILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
++|+||||||+||+.+.+.+.+.|+++. -.+-.-|-+..
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~ 190 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE 190 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999999999999999999999987652 24556676554
No 42
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.9e-40 Score=343.43 Aligned_cols=184 Identities=24% Similarity=0.312 Sum_probs=145.0
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCcceEEECCEeCCCCChHHh-hc
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL--YEPTNGQILIDGFPIKEVDIKWL-RG 576 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl--y~p~sG~I~idG~di~~i~~~~l-R~ 576 (703)
|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+|+|+|+ ++|++|+|.+||.|+.+.+.... |.
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 899999999963 4799999999999999999999999999999999999 89999999999999998876655 56
Q ss_pred ceEEEccCCccccc-cHHHHhccCCC----CCCC----HHHHHHHHHHhchH-HHHHcCCCCcccccCCCC-CChHHHHH
Q 005302 577 RIGFVGQEPKLFRM-DISSNISYGCT----QDIK----QQDIEWAAKQAYAH-DFIMSLPSGYETLVDDDL-LSGGQKQR 645 (703)
Q Consensus 577 ~I~~V~Qd~~LF~g-TI~eNI~~g~~----~~~~----~e~i~~aa~~A~l~-d~I~~LP~GydT~vGe~~-LSGGQkQR 645 (703)
.++||+|++.+|.+ |++||+.++.. ...+ .+++.++++..++. +. .+..+ .. ||||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~~--~~~LSgGqkQr 151 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESY-------LSRYL--NEGFSGGEKKR 151 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGG-------GGSBT--TCC----HHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhH-------hcCCc--ccCCCHHHHHH
Confidence 69999999999986 99999987421 0111 23445555555542 21 12222 34 99999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 646 IAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 646 IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
++|||||+++|++||||||||+||+++.+.+.+.|+++. -++=.-|-+..
T Consensus 152 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 205 (250)
T 2d2e_A 152 NEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI 205 (250)
T ss_dssp HHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 999999999999999999999999999999999998763 24556676553
No 43
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.7e-39 Score=353.44 Aligned_cols=184 Identities=26% Similarity=0.450 Sum_probs=150.1
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+||+++.+.+.. ++.|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999963 4699999999999999999999999999999999999999999999999999877643 6789
Q ss_pred EEEccCCcccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 579 GFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
|||+|++.+|. .|++|||.|+.. ...+ ++++.++++..++.++..+.| .+||||||||++|||||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP---------AQLSGGQRQRVAVARAI 156 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT---------TTCCSSCHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999997 499999999742 1122 245677777777766544433 47999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHH
Q 005302 653 LRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLY 696 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~ 696 (703)
+++|++|+||||||+||+.+.+.+.+.|+++. -.+-.-|-+...
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a 205 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA 205 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 99999999999999999999999999987653 355566765543
No 44
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.2e-39 Score=354.94 Aligned_cols=183 Identities=28% Similarity=0.411 Sum_probs=153.4
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC------CChH
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE------VDIK 572 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~------i~~~ 572 (703)
.|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||+++.+ .+.
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 3899999999963 469999999999999999999999999999999999999999999999999876 443
Q ss_pred HhhcceEEEccCCcccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005302 573 WLRGRIGFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI 646 (703)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRI 646 (703)
.++.||||+|++.+|. .|++|||.|+.. ...+ ++++.++++..++.++..+.| .+||||||||+
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSGGq~QRv 148 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP---------RELSGGQRQRV 148 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG---------GGSCHHHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc---------ccCCHHHHHHH
Confidence 3678999999999996 699999998621 0122 345677777777765543333 47999999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhH
Q 005302 647 AIARAILRDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSL 695 (703)
Q Consensus 647 aLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~ 695 (703)
+|||||+++|++|+||||||+||+.+.+.+.+.|+++. -.+-.-|-+..
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 202 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 99999999999999999999999999999999887653 25556676554
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.3e-39 Score=337.51 Aligned_cols=179 Identities=24% Similarity=0.307 Sum_probs=151.1
Q ss_pred EEEEEEEEEcCCC-CCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 500 IDFVDVSFRYSSR-EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 500 I~~~nVsF~Y~~~-~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
|+++||+++|++. ...++|+|+||+|+ ||++||+||||||||||+|+|+|++ |++|+|.+||+++.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 01469999999999 9999999999999999999999999 9999999999999765 33 7889
Q ss_pred E-EEccCCccccccHHHHhccCCC-CCCCHHHHHHHHHHhchH-HHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhc
Q 005302 579 G-FVGQEPKLFRMDISSNISYGCT-QDIKQQDIEWAAKQAYAH-DFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 579 ~-~V~Qd~~LF~gTI~eNI~~g~~-~~~~~e~i~~aa~~A~l~-d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~ 653 (703)
+ ||+|++.+ +.|++||+.++.. .+.+++++.++++..++. +. .+. .+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEI-----------LRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGG-----------GGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhH-----------hcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999999 9999999998631 033567777777776654 32 222 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-EEEEecchhH
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNGL-LVKSLHFLSL 695 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-~~~~~~~~~~ 695 (703)
++|++|+||||||+||+++.+.+.+.|+++.. ++=+-|-+..
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~ 187 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDM 187 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGG
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHH
Confidence 99999999999999999999999999998864 4555666543
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3.8e-39 Score=334.16 Aligned_cols=178 Identities=29% Similarity=0.355 Sum_probs=146.9
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
-|+++||+++|+++ .++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|. +++.|
T Consensus 4 ~l~i~~l~~~y~~~--~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQAE--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETTT--TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCCC--CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 38999999999722 4699999999999999999999999999999999999999999998 46789
Q ss_pred EEEccCCccc-cccHHHHhccCCC---------CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005302 579 GFVGQEPKLF-RMDISSNISYGCT---------QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (703)
Q Consensus 579 ~~V~Qd~~LF-~gTI~eNI~~g~~---------~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (703)
|||+|++.+| ..|++|||.++.. +..+++++.++++..++.++..+. -.+||||||||++|
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgGq~qrv~l 139 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE---------FTSLSGGQRQLILI 139 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSB---------GGGSCHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCC---------hhhCCHHHHHHHHH
Confidence 9999999987 6799999998631 011234567777777765543221 14799999999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhHHHHhh
Q 005302 649 ARAILRDPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSLYVLIC 700 (703)
Q Consensus 649 ARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~~~~~~ 700 (703)
||||+++|++||||||||+||+++.+.+.+.|+++ .-++=+-|-+....-+|
T Consensus 140 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~ 196 (253)
T 2nq2_C 140 ARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIA 196 (253)
T ss_dssp HHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHC
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 99999999999999999999999999999998765 23666778776543333
No 47
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.6e-38 Score=332.04 Aligned_cols=183 Identities=23% Similarity=0.252 Sum_probs=147.5
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCcceEEECCEeCCCCChHHh-h
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL--YEPTNGQILIDGFPIKEVDIKWL-R 575 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl--y~p~sG~I~idG~di~~i~~~~l-R 575 (703)
.|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+|+|+|+ ++|++|+|.+||.|+.+.+.... |
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 5999999999963 5799999999999999999999999999999999999 67999999999999988876665 4
Q ss_pred cceEEEccCCccccc-cHHHHhccCC--------CCCCCHH----HHHHHHHHhchHHHHHcCCCCcccccCC---C-CC
Q 005302 576 GRIGFVGQEPKLFRM-DISSNISYGC--------TQDIKQQ----DIEWAAKQAYAHDFIMSLPSGYETLVDD---D-LL 638 (703)
Q Consensus 576 ~~I~~V~Qd~~LF~g-TI~eNI~~g~--------~~~~~~e----~i~~aa~~A~l~d~I~~LP~GydT~vGe---~-~L 638 (703)
..|+||+|++.+|.+ |+.||+.++. .+..+.+ ++.++++.. |+++...+ . +|
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~~L 165 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALL-----------KMPEDLLTRSVNVGF 165 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHT-----------TCCTTTTTSBTTTTC
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHc-----------CCChhHhcCCcccCC
Confidence 569999999999886 8999986531 0012322 233333333 33332222 2 49
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc----EEEEecchhH
Q 005302 639 SGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL----LVKSLHFLSL 695 (703)
Q Consensus 639 SGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~----~~~~~~~~~~ 695 (703)
|||||||++|||||+++|++||||||||+||+++.+.+.+.|+++.. ++=.-|-+..
T Consensus 166 SgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~ 226 (267)
T 2zu0_C 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI 226 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH
Confidence 99999999999999999999999999999999999999999988742 4455675543
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=1.3e-36 Score=322.37 Aligned_cols=199 Identities=12% Similarity=0.187 Sum_probs=168.2
Q ss_pred HHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccccCCCCcEEEEEEEE
Q 005302 428 MFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKLQRLMGRIDFVDVSF 507 (703)
Q Consensus 428 ~lv~~G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~~~~~~~~~g~I~~~nVsF 507 (703)
+-...+..+-+.+.||+.+..+. .++..++..+..++++..+.+|+.++++.+++... ... ..++..+.|+++||+|
T Consensus 33 ~~~a~~~~~~~n~~afl~~~~q~-~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~-~~~-~~~~~~~~i~~~~vs~ 109 (305)
T 2v9p_A 33 YEYALAAGSDSNARAFLATNSQA-KHVKDCATMVRHYLRAETQALSMPAYIKARCKLAT-GEG-SWKSILTFFNYQNIEL 109 (305)
T ss_dssp HHHHHTTTTCHHHHHHTTCTTHH-HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC-SSC-CTHHHHHHHHHTTCCH
T ss_pred HHHHHhcCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CCC-cccccCCeEEEEEEEE
Confidence 34455677788999999998774 78899999999999999999999999987554221 111 1111224589999999
Q ss_pred EcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCcc
Q 005302 508 RYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKL 587 (703)
Q Consensus 508 ~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~L 587 (703)
+|+ .++|+|+||+|++||++|||||||||||||+++|+|++ +|+| +++|+|++.+
T Consensus 110 ~y~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~l 164 (305)
T 2v9p_A 110 ITF----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHF 164 (305)
T ss_dssp HHH----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGG
T ss_pred EcC----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccc
Confidence 996 36999999999999999999999999999999999999 8999 4678999999
Q ss_pred ccccHHH-HhccCCCCCCCHHHHHHHHHHhchHHHHHc-CCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCC
Q 005302 588 FRMDISS-NISYGCTQDIKQQDIEWAAKQAYAHDFIMS-LPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEAT 665 (703)
Q Consensus 588 F~gTI~e-NI~~g~~~~~~~e~i~~aa~~A~l~d~I~~-LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaT 665 (703)
|++|++| ||.++ + ++++ +++++|.. ||+||| ..+|||||||| ||||+++|+||| |
T Consensus 165 f~~ti~~~ni~~~-~-~~~~----------~~~~~i~~~L~~gld----g~~LSgGqkQR---ARAll~~p~iLl----T 221 (305)
T 2v9p_A 165 WLASLADTRAALV-D-DATH----------ACWRYFDTYLRNALD----GYPVSIDRKHK---AAVQIKAPPLLV----T 221 (305)
T ss_dssp GGGGGTTCSCEEE-E-EECH----------HHHHHHHHTTTGGGG----TCCEECCCSSC---CCCEECCCCEEE----E
T ss_pred ccccHHHHhhccC-c-cccH----------HHHHHHHHHhHccCC----ccCcCHHHHHH---HHHHhCCCCEEE----E
Confidence 9999998 99998 3 5553 45788888 999999 46899999999 999999999999 9
Q ss_pred CCCCHHHHHHHH
Q 005302 666 SALDAESEHNIK 677 (703)
Q Consensus 666 SaLD~~tE~~I~ 677 (703)
|+||+++|+.|.
T Consensus 222 s~LD~~~~~~i~ 233 (305)
T 2v9p_A 222 SNIDVQAEDRYL 233 (305)
T ss_dssp ESSCSTTCGGGG
T ss_pred CCCCHHHHHHHH
Confidence 999999999987
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=5.7e-31 Score=299.86 Aligned_cols=175 Identities=20% Similarity=0.263 Sum_probs=141.0
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.++++|++++|++ ..|++.||+|++||++||+||||||||||+|+|+|+++|++|+|.++| ..+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 5899999999963 468888999999999999999999999999999999999999999765 358
Q ss_pred EEEccCCcc-ccccHHHHhccCCCCC--CCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhc
Q 005302 579 GFVGQEPKL-FRMDISSNISYGCTQD--IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 579 ~~V~Qd~~L-F~gTI~eNI~~g~~~~--~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~ 653 (703)
++++|+... |.+|+.||+.+..... ...+.+.++++..++.+ .... .+||||||||++|||||.
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHR-----------LLESNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGG-----------CTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHH-----------HhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999764 6899999998753211 22344455555555433 2222 479999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC-----cEEEEecchhHHHHhh
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSNG-----LLVKSLHFLSLYVLIC 700 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~~-----~~~~~~~~~~~~~~~~ 700 (703)
++|++|||||||++||+.+...|.+.|+++. -++=.-|-+..-.-+|
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~a 453 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIA 453 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999999999999987652 2466678776544444
No 50
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=7.2e-31 Score=313.20 Aligned_cols=177 Identities=24% Similarity=0.335 Sum_probs=130.7
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
-|+++||+|+|+++ ..++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|. ..|
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 39999999999753 257999999999999999999999999999999999999999999999872 146
Q ss_pred EEEccCCcc-----ccccH-------------------------------------------------------------
Q 005302 579 GFVGQEPKL-----FRMDI------------------------------------------------------------- 592 (703)
Q Consensus 579 ~~V~Qd~~L-----F~gTI------------------------------------------------------------- 592 (703)
|||+|++.. .+.|+
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 777776421 12333
Q ss_pred -----HHHhccCCC----------------------------------------CCCCHHHHHHHHHHhchHHHH-HcCC
Q 005302 593 -----SSNISYGCT----------------------------------------QDIKQQDIEWAAKQAYAHDFI-MSLP 626 (703)
Q Consensus 593 -----~eNI~~g~~----------------------------------------~~~~~e~i~~aa~~A~l~d~I-~~LP 626 (703)
+|||.++.. ....++++.+.++..++.+.. ..
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~-- 896 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSH-- 896 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHH--
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcC--
Confidence 344443210 001123344444444443221 11
Q ss_pred CCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc-EEEEecchhH
Q 005302 627 SGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL-LVKSLHFLSL 695 (703)
Q Consensus 627 ~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~-~~~~~~~~~~ 695 (703)
.. -.+||||||||++|||||+++|++|||||||++||+++...+.+.|++.++ ++=.-|-+..
T Consensus 897 ----~~--~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~ 960 (986)
T 2iw3_A 897 ----SR--IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEF 960 (986)
T ss_dssp ----SC--GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHH
T ss_pred ----CC--ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHH
Confidence 11 147999999999999999999999999999999999999999999998753 4445565443
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=1.2e-30 Score=301.02 Aligned_cols=176 Identities=26% Similarity=0.297 Sum_probs=139.2
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.++++|++++|++ ..|+++||+|++||.+||+||||||||||+|+|+|+++|++|+|.+ +..|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 4899999999963 3689999999999999999999999999999999999999999986 2469
Q ss_pred EEEccCCcc-ccccHHHHhccC-CCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCC
Q 005302 579 GFVGQEPKL-FRMDISSNISYG-CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (703)
Q Consensus 579 ~~V~Qd~~L-F~gTI~eNI~~g-~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p 656 (703)
|||+|++.+ ++.|+.||+... .....+.+++.++++..++.+. .+..+ .+||||||||++|||||.++|
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~--~~LSGGe~QRv~iAraL~~~p 490 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDL-------YDRNV--EDLSGGELQRVAIAATLLRDA 490 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTT-------TTSBG--GGCCHHHHHHHHHHHHHTSCC
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchH-------hcCCh--hhCCHHHHHHHHHHHHHHhCC
Confidence 999999876 678999999764 1100123444555554444221 11111 479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhHHHHhh
Q 005302 657 TILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSLYVLIC 700 (703)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~~~~~~ 700 (703)
++||||||||+||+++...+.+.|+++ .-++-.-|-+..-.-+|
T Consensus 491 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~a 539 (607)
T 3bk7_A 491 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS 539 (607)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 999999999999999999999998865 23566778766544333
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=1e-30 Score=298.12 Aligned_cols=174 Identities=27% Similarity=0.300 Sum_probs=137.2
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+ +..|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 4899999999963 3699999999999999999999999999999999999999999985 2469
Q ss_pred EEEccCCcc-ccccHHHHhccC-CCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcC
Q 005302 579 GFVGQEPKL-FRMDISSNISYG-CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILR 654 (703)
Q Consensus 579 ~~V~Qd~~L-F~gTI~eNI~~g-~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r 654 (703)
|||+|++.. ++.|+.||+... .....+.+++.++++.. |+...... ..||||||||++|||||++
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPL-----------GIIDLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTT-----------TCGGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc-----------CChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999876 678999998753 11001223333333332 33322222 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhHHHHhh
Q 005302 655 DPTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSLYVLIC 700 (703)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~~~~~~ 700 (703)
+|++|||||||++||+.+...|.+.|+++ .-++-.-|-+....-+|
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~ 469 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS 469 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 99999999999999999999999998764 24566678766544444
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=7.2e-31 Score=302.77 Aligned_cols=182 Identities=24% Similarity=0.239 Sum_probs=141.4
Q ss_pred cEEE--------EEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceE---------EE
Q 005302 499 RIDF--------VDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI---------LI 561 (703)
Q Consensus 499 ~I~~--------~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I---------~i 561 (703)
.|++ +||+++|++. ..+|+|+| +|++||.+||+||||||||||+|+|+|+++|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 3788 8999999742 35899999 999999999999999999999999999999999996 45
Q ss_pred CCEeCCCCChH--HhhcceEEEccCC----ccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC
Q 005302 562 DGFPIKEVDIK--WLRGRIGFVGQEP----KLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD 635 (703)
Q Consensus 562 dG~di~~i~~~--~lR~~I~~V~Qd~----~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe 635 (703)
+|.++.++... ..+..+++++|+. .++.+|+.||+...+ ..+++.++++..++.+.. +..+
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~----~~~~~~~~L~~lgL~~~~-------~~~~-- 226 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD----EVGKFEEVVKELELENVL-------DREL-- 226 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC----CSSCHHHHHHHTTCTTGG-------GSBG--
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH----HHHHHHHHHHHcCCCchh-------CCCh--
Confidence 67655432111 1234688998874 345679999997532 134566777776664332 2221
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchhHH
Q 005302 636 DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLSLY 696 (703)
Q Consensus 636 ~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~~~ 696 (703)
..||||||||++|||||+++|++||||||||+||+++...+.+.|+++ .-++=.-|-+..-
T Consensus 227 ~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~ 291 (607)
T 3bk7_A 227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVL 291 (607)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHH
Confidence 479999999999999999999999999999999999999999988865 2356667876643
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=1.1e-30 Score=297.82 Aligned_cols=181 Identities=27% Similarity=0.256 Sum_probs=136.9
Q ss_pred EEE-EEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceE---------EECCEeCCCC
Q 005302 500 IDF-VDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI---------LIDGFPIKEV 569 (703)
Q Consensus 500 I~~-~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I---------~idG~di~~i 569 (703)
-++ +||+++|++. .++++|+| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++...
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 455 5999999742 36899999 999999999999999999999999999999999996 4567655432
Q ss_pred ChHH--hhcceEEEccCCcc----ccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHH
Q 005302 570 DIKW--LRGRIGFVGQEPKL----FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQK 643 (703)
Q Consensus 570 ~~~~--lR~~I~~V~Qd~~L----F~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQk 643 (703)
.... .+..+++++|+..+ +.+|+.||+.... ..+++.++++..++.+. .+..+ .+||||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~----~~~~~~~~l~~lgl~~~-------~~~~~--~~LSgGek 164 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD----ETGKLEEVVKALELENV-------LEREI--QHLSGGEL 164 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC----SSSCHHHHHHHTTCTTT-------TTSBG--GGCCHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh----HHHHHHHHHHHcCCChh-------hhCCh--hhCCHHHH
Confidence 1111 23468899987544 3469999997531 13456677777665322 12211 47999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchhHH
Q 005302 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLSLY 696 (703)
Q Consensus 644 QRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~~~ 696 (703)
||++|||||+.+|++||||||||+||+++.+.+.+.|+++ .-++=.-|-+...
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~ 221 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVL 221 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 9999999999999999999999999999999999888765 2356666776543
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.4e-28 Score=280.17 Aligned_cols=171 Identities=25% Similarity=0.263 Sum_probs=134.1
Q ss_pred EEEEEEcCCCCCcccceeeeEEecCC-----cEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 503 VDVSFRYSSREMVPVLQHVNISVNPG-----EVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 503 ~nVsF~Y~~~~~~~vL~~isl~I~~G-----e~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
++++|+|++. ..+++|+||++++| |.+||+||||||||||+|+|+|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 6788999853 46899999999999 8899999999999999999999999999972 21 346
Q ss_pred eEEEccCCc-cccccHHHHhccCCC-CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCC
Q 005302 578 IGFVGQEPK-LFRMDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRD 655 (703)
Q Consensus 578 I~~V~Qd~~-LF~gTI~eNI~~g~~-~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~ 655 (703)
+++++|+.. .|++|++||+..... ...+.+...++++..++.+.. +..+ ..||||||||++|||||.++
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~--~~LSGGqkQRv~iAraL~~~ 485 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDII-------DQEV--QHLSGGELQRVAIVLALGIP 485 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTS-------SSBS--SSCCHHHHHHHHHHHHTTSC
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhh-------cCCh--hhCCHHHHHHHHHHHHHHhC
Confidence 999999965 578999999864311 123455556666666553321 1111 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhC-----CcEEEEecchhHHH
Q 005302 656 PTILILDEATSALDAESEHNIKVATLSN-----GLLVKSLHFLSLYV 697 (703)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~al~~~-----~~~~~~~~~~~~~~ 697 (703)
|++|||||||++||+.+...+.+.|+++ .-++=.-|-+..-.
T Consensus 486 p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~ 532 (608)
T 3j16_B 486 ADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMAT 532 (608)
T ss_dssp CSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 9999999999999999999999888765 23566667665443
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=1.1e-26 Score=277.41 Aligned_cols=171 Identities=25% Similarity=0.314 Sum_probs=136.8
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcce
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
.+...|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+| |+| +|.+... +..+
T Consensus 435 ~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 435 DLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred eeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 5888899999973 479999999999999999999999999999999996 665 6655421 1247
Q ss_pred EEEccCC-c-cccccHHHHhccCCCCCCCHHHHHHHHHHhchH-HHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCC
Q 005302 579 GFVGQEP-K-LFRMDISSNISYGCTQDIKQQDIEWAAKQAYAH-DFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRD 655 (703)
Q Consensus 579 ~~V~Qd~-~-LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~-d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~ 655 (703)
+|++|++ . ....|+.||+.+... .. ++++.++++..++. +...+.+ ..||||||||++|||||+.+
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~~-~~-~~~v~~~L~~lgL~~~~~~~~~---------~~LSGGqkQRvaLArAL~~~ 566 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESGV-GT-KEAIKDKLIEFGFTDEMIAMPI---------SALSGGWKMKLALARAVLRN 566 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTCS-SC-HHHHHHHHHHTTCCHHHHHSBG---------GGCCHHHHHHHHHHHHHHTT
T ss_pred EEEcccccccccCCcHHHHHHHhhc-CH-HHHHHHHHHHcCCChhhhcCCc---------ccCCHHHHHHHHHHHHHhcC
Confidence 9999985 3 345799999986211 22 77888888888884 4433221 46999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhCC-cEEEEecchhHHH
Q 005302 656 PTILILDEATSALDAESEHNIKVATLSNG-LLVKSLHFLSLYV 697 (703)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~al~~~~-~~~~~~~~~~~~~ 697 (703)
|+|||||||||+||+++.+.+.+.|++.+ -++=.-|-+...-
T Consensus 567 P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~ 609 (986)
T 2iw3_A 567 ADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLD 609 (986)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence 99999999999999999999999998832 2556667665543
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.3e-28 Score=280.30 Aligned_cols=180 Identities=23% Similarity=0.295 Sum_probs=133.1
Q ss_pred EEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceE-----------EECCEeCCCCChH
Q 005302 504 DVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI-----------LIDGFPIKEVDIK 572 (703)
Q Consensus 504 nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I-----------~idG~di~~i~~~ 572 (703)
|++++|+++ ...+++++ ++++||.+||+||||||||||+|+|+|+++|++|+| .++|.++..+...
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 468999754 45788877 699999999999999999999999999999999998 3445444333333
Q ss_pred HhhcceEE--EccCCc----cccc---cHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHH
Q 005302 573 WLRGRIGF--VGQEPK----LFRM---DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQK 643 (703)
Q Consensus 573 ~lR~~I~~--V~Qd~~----LF~g---TI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQk 643 (703)
.+++.+.. .+|... .+.+ ++.+++.... ..+.+++.++++..++.+...+.+ ..||||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~--~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGe~ 227 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM--EKSPEDVKRYIKILQLENVLKRDI---------EKLSGGEL 227 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC--CSCHHHHHHHHHHHTCTGGGGSCT---------TTCCHHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh--hhHHHHHHHHHHHcCCcchhCCCh---------HHCCHHHH
Confidence 33444433 233221 1222 6777776542 345678888888888755433222 47999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc----EEEEecchhHHH
Q 005302 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL----LVKSLHFLSLYV 697 (703)
Q Consensus 644 QRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~----~~~~~~~~~~~~ 697 (703)
||++|||||+++|++||||||||+||+++...+.+.|+++.. ++-.-|-+....
T Consensus 228 Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~ 285 (608)
T 3j16_B 228 QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLD 285 (608)
T ss_dssp HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999887632 555667665433
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=2.2e-28 Score=278.54 Aligned_cols=178 Identities=19% Similarity=0.255 Sum_probs=133.2
Q ss_pred EEEEEEcCCCCCcccceeeeEEe-cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceE-----------EECCEeCCCCC
Q 005302 503 VDVSFRYSSREMVPVLQHVNISV-NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI-----------LIDGFPIKEVD 570 (703)
Q Consensus 503 ~nVsF~Y~~~~~~~vL~~isl~I-~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I-----------~idG~di~~i~ 570 (703)
++++.+|+.+ . ++-..|.+ ++||.+||+||||||||||+|+|+|+++|++|+| .++|.++..+.
T Consensus 3 ~~~~~~~~~~--~--f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~ 78 (538)
T 3ozx_A 3 GEVIHRYKVN--G--FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYF 78 (538)
T ss_dssp CCEEEESSTT--S--CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHH
T ss_pred CCCceecCCC--c--eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHH
Confidence 3578899854 2 44445555 4899999999999999999999999999999999 67787764332
Q ss_pred hHHh------hcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHH
Q 005302 571 IKWL------RGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQ 644 (703)
Q Consensus 571 ~~~l------R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQ 644 (703)
.... ...+.++.|.+.++.+|++|++...+ ..+++.++++..++.+.. +..+ ..|||||||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~----~~~~~~~~l~~l~l~~~~-------~~~~--~~LSgGe~Q 145 (538)
T 3ozx_A 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID----ERGKKDEVKELLNMTNLW-------NKDA--NILSGGGLQ 145 (538)
T ss_dssp HHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC----CSSCHHHHHHHTTCGGGT-------TSBG--GGCCHHHHH
T ss_pred HHHhhcccchhhccchhhhhhhhccCcHHHHhhcch----hHHHHHHHHHHcCCchhh-------cCCh--hhCCHHHHH
Confidence 2211 22345566667778899999886542 234566677776664321 2221 479999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhHHH
Q 005302 645 RIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSLYV 697 (703)
Q Consensus 645 RIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~~~ 697 (703)
|++|||||+++|+|||||||||+||+++...+.+.|+++. -++=.-|-+...-
T Consensus 146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~ 201 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLD 201 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHH
Confidence 9999999999999999999999999999999999988763 3555667765433
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.94 E-value=1.6e-27 Score=279.08 Aligned_cols=172 Identities=24% Similarity=0.361 Sum_probs=105.4
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHH---------------------HHHhcCCCCC-------cceEEECCEeC
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLV---------------------NLLLRLYEPT-------NGQILIDGFPI 566 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLl---------------------kLLlgly~p~-------sG~I~idG~di 566 (703)
..+|+||||+|++||.+||+||||||||||+ +++.|+..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4699999999999999999999999999998 9999999999 56667777665
Q ss_pred CCCChHHhhcceEEEccCCccc--------------------cccHHHHhccCCCCCCCH--HH-----HHHHHHHhchH
Q 005302 567 KEVDIKWLRGRIGFVGQEPKLF--------------------RMDISSNISYGCTQDIKQ--QD-----IEWAAKQAYAH 619 (703)
Q Consensus 567 ~~i~~~~lR~~I~~V~Qd~~LF--------------------~gTI~eNI~~g~~~~~~~--e~-----i~~aa~~A~l~ 619 (703)
.. ..|+.+++|+|.+.++ ..|+.||+.++......+ .+ +.++.+..
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 43 2356677777765543 468999998863111111 11 11112221
Q ss_pred HHHHcCCCCccccc-CC--CCCChHHHHHHHHHHHhcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEe
Q 005302 620 DFIMSLPSGYETLV-DD--DLLSGGQKQRIAIARAILRDPT--ILILDEATSALDAESEHNIKVATLSNG----LLVKSL 690 (703)
Q Consensus 620 d~I~~LP~GydT~v-Ge--~~LSGGQkQRIaLARAL~r~p~--ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~ 690 (703)
+.+..+ |++... .. ..||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. -++=.-
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 223333 222221 12 4799999999999999999998 999999999999999999999887763 466677
Q ss_pred cchhH
Q 005302 691 HFLSL 695 (703)
Q Consensus 691 ~~~~~ 695 (703)
|-+..
T Consensus 262 Hd~~~ 266 (670)
T 3ux8_A 262 HDEDT 266 (670)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 87663
No 60
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.7e-29 Score=282.40 Aligned_cols=165 Identities=18% Similarity=0.131 Sum_probs=129.4
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-e-EEECCEeCCCCChHHhhc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG-Q-ILIDGFPIKEVDIKWLRG 576 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG-~-I~idG~di~~i~~~~lR~ 576 (703)
-++++||+|+|+ ++||++++||+++|+||||||||||+|+|+|++.|++| + |++|| | .|+
T Consensus 118 mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~ 179 (460)
T 2npi_A 118 MKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQ 179 (460)
T ss_dssp HHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTS
T ss_pred hhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccC
Confidence 466777777773 68999999999999999999999999999999999999 9 99998 1 378
Q ss_pred ceEEEccCCcccc----ccHHHHhccCCCC--C-CCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005302 577 RIGFVGQEPKLFR----MDISSNISYGCTQ--D-IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (703)
Q Consensus 577 ~I~~V~Qd~~LF~----gTI~eNI~~g~~~--~-~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (703)
.+++|+|++.+|. .|++||+ ++... . .+++++.++++.. |++......+||||||||++||
T Consensus 180 ~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~~~~LSgGq~qrlalA 247 (460)
T 2npi_A 180 PIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINENKDLYLECISQLGQV 247 (460)
T ss_dssp CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGGCHHHHHHHHHHHHHH
T ss_pred Ceeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccchhhhhHHHHHHHHHH
Confidence 8999999996654 5899999 76321 0 1112223333333 3333332347999999999999
Q ss_pred HH--hcCCCCE----EEEeC-CCCCCCHHHHHHHHHHHHhCC-cEEEEecchh
Q 005302 650 RA--ILRDPTI----LILDE-ATSALDAESEHNIKVATLSNG-LLVKSLHFLS 694 (703)
Q Consensus 650 RA--L~r~p~I----LILDE-aTSaLD~~tE~~I~~al~~~~-~~~~~~~~~~ 694 (703)
|| |.++|++ ||||| |||+||+. .+.+.+.+++.+ ..+=..|-..
T Consensus 248 ra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~ 299 (460)
T 2npi_A 248 VGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSET 299 (460)
T ss_dssp HHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSS
T ss_pred HHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCc
Confidence 99 9999999 99999 99999999 788888887754 3555667655
No 61
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.93 E-value=1.1e-26 Score=271.99 Aligned_cols=169 Identities=27% Similarity=0.326 Sum_probs=116.1
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh----------------------cCCCCCcceEEECCEeCCCCChH
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL----------------------RLYEPTNGQILIDGFPIKEVDIK 572 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLl----------------------gly~p~sG~I~idG~di~~i~~~ 572 (703)
.++|+||||+|++||++||+||||||||||+++++ |+. +.+|.|.++|.++......
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~-~~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE-HLDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG-GCSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc-ccCceeEeccccCCCCCCc
Confidence 46899999999999999999999999999998764 333 3457899999998754422
Q ss_pred Hhhc-----------------------------------------ceEEEccCCccc-----------------------
Q 005302 573 WLRG-----------------------------------------RIGFVGQEPKLF----------------------- 588 (703)
Q Consensus 573 ~lR~-----------------------------------------~I~~V~Qd~~LF----------------------- 588 (703)
..+. ..|++.|+..++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 1111 123333433322
Q ss_pred ----------cccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCC
Q 005302 589 ----------RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDP 656 (703)
Q Consensus 589 ----------~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p 656 (703)
..|++||+.++.. ....++..++ +..+..++ ...+. .+||||||||++|||||+++|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~-~~~~~~~~~~---------l~~~~l~~-~~~~~~~~~LSgG~~qrv~iAraL~~~p 562 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFAS-IPKIKRKLET---------LYDVGLGY-MKLGQPATTLSGGEAQRVKLAAELHRRS 562 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTT-CHHHHHHHHH---------HHHTTCTT-SBTTCCGGGCCHHHHHHHHHHHHHHSCC
T ss_pred ecCCCHHHHhhCCHHHHHHHHHH-hhhHHHHHHH---------HHHcCCch-hhccCCchhCCHHHHHHHHHHHHHhhCC
Confidence 4588999988742 2112222222 33332222 12233 489999999999999999887
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 657 ---TILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 657 ---~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
++||||||||+||+.+.+.|.+.|+++. -++=.-|-+..
T Consensus 563 ~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~ 608 (670)
T 3ux8_A 563 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV 608 (670)
T ss_dssp CSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 5999999999999999999999987653 35667787664
No 62
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.91 E-value=5.9e-28 Score=244.39 Aligned_cols=146 Identities=17% Similarity=0.190 Sum_probs=105.9
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCh-HHhhcceEEEccCCcccc----
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI-KWLRGRIGFVGQEPKLFR---- 589 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~-~~lR~~I~~V~Qd~~LF~---- 589 (703)
..-|+|+||+|++|+.+||+||||||||||+++|+|++ | |+|.+ |+++..... ...++.++|++|++.+|.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 34799999999999999999999999999999999999 6 99999 888754332 345788999999886664
Q ss_pred -------ccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHH-----HHHhcCCCC
Q 005302 590 -------MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI-----ARAILRDPT 657 (703)
Q Consensus 590 -------gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL-----ARAL~r~p~ 657 (703)
+++.+| .++. +.+++.++++... ...+ +..||||||||++| ||+++++|+
T Consensus 86 ~~~~l~~~~~~~~-~~g~----~~~~i~~~l~~~~------------~~il-~~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 86 NEDFLEYDNYANN-FYGT----LKSEYDKAKEQNK------------ICLF-EMNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp TTCEEEEEEETTE-EEEE----EHHHHHHHHHTTC------------EEEE-EECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred ccchhhhhhcccc-cCCC----cHHHHHHHHhCCC------------cEEE-EecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 344455 3442 2445555554321 2222 25799999999999 999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh
Q 005302 658 ILILDEATSALDAESEHNIKVATLS 682 (703)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~al~~ 682 (703)
+++|||||+++|.++|..|++.+.+
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~ 172 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQ 172 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 9999999999999999999998864
No 63
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.91 E-value=8.6e-25 Score=241.02 Aligned_cols=177 Identities=14% Similarity=0.185 Sum_probs=130.5
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC--------------------------------------CCcc
Q 005302 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE--------------------------------------PTNG 557 (703)
Q Consensus 516 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~--------------------------------------p~sG 557 (703)
.+++++||++++| .++||||||||||||++.|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3689999999999 999999999999999999976663 5579
Q ss_pred eEEECCEeCCCCChHHhhcc-eEEEccCCccccccHHHHhccCCCCCCCH------------------------------
Q 005302 558 QILIDGFPIKEVDIKWLRGR-IGFVGQEPKLFRMDISSNISYGCTQDIKQ------------------------------ 606 (703)
Q Consensus 558 ~I~idG~di~~i~~~~lR~~-I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~------------------------------ 606 (703)
++.+||.+++..+...+++. +++++|++.++-++-.++..+.+. ....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~-~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDR-RVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHH-HhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 99999999987777888777 899999999998888777766532 2211
Q ss_pred --------------HHHHHHHH-------------HhchHHHHHcCC--C----------------Cccc---ccCCC--
Q 005302 607 --------------QDIEWAAK-------------QAYAHDFIMSLP--S----------------GYET---LVDDD-- 636 (703)
Q Consensus 607 --------------e~i~~aa~-------------~A~l~d~I~~LP--~----------------GydT---~vGe~-- 636 (703)
+++.+.+. ...+.+.+..+. . |++. .++.+
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 00000000 011222333332 1 2222 12111
Q ss_pred -------C-CChHHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchh
Q 005302 637 -------L-LSGGQKQRIAIARAILRDP--TILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLS 694 (703)
Q Consensus 637 -------~-LSGGQkQRIaLARAL~r~p--~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~ 694 (703)
. ||||||||++|||||+.+| ++||||||||+||+++.+.+.+.|+++. -++=.-|-..
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~ 357 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQ 357 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHH
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence 1 7999999999999999999 9999999999999999999999999873 3444556553
No 64
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.91 E-value=1.3e-26 Score=233.17 Aligned_cols=143 Identities=15% Similarity=0.147 Sum_probs=98.2
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHH
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (703)
..+|+|+ ++||++||+||||||||||+|+|+|+ +|++|+|. +.++.. +...+|+.||||+|++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 4689985 99999999999999999999999999 99999994 444432 2234688999999997 77
Q ss_pred Hh-ccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHH
Q 005302 595 NI-SYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESE 673 (703)
Q Consensus 595 NI-~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE 673 (703)
|+ .++.+ . .+.+........+.+.+.. |+ |||||++|||||+.+|++||||||||+ +.
T Consensus 78 nl~~~~~~-~--~~~~~~~~~~~~~~~~l~~---gl-----------Gq~qrv~lAraL~~~p~lllLDEPts~----~~ 136 (208)
T 3b85_A 78 KIDPYLRP-L--HDALRDMVEPEVIPKLMEA---GI-----------VEVAPLAYMRGRTLNDAFVILDEAQNT----TP 136 (208)
T ss_dssp --CTTTHH-H--HHHHTTTSCTTHHHHHHHT---TS-----------EEEEEGGGGTTCCBCSEEEEECSGGGC----CH
T ss_pred HHHHHHHH-H--HHHHHHhccHHHHHHHHHh---CC-----------chHHHHHHHHHHhcCCCEEEEeCCccc----cH
Confidence 77 45311 0 0000000001122233332 22 999999999999999999999999999 88
Q ss_pred HHHHHHHHhC---CcEEEEecchh
Q 005302 674 HNIKVATLSN---GLLVKSLHFLS 694 (703)
Q Consensus 674 ~~I~~al~~~---~~~~~~~~~~~ 694 (703)
+.+.+.|+++ ..++ .-|-+.
T Consensus 137 ~~l~~~l~~l~~g~tii-vtHd~~ 159 (208)
T 3b85_A 137 AQMKMFLTRLGFGSKMV-VTGDIT 159 (208)
T ss_dssp HHHHHHHTTBCTTCEEE-EEEC--
T ss_pred HHHHHHHHHhcCCCEEE-EECCHH
Confidence 8888888876 2356 777654
No 65
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=2.1e-24 Score=257.40 Aligned_cols=179 Identities=27% Similarity=0.357 Sum_probs=125.4
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHH---------HHHhcCCCCC------cc-----
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLV---------NLLLRLYEPT------NG----- 557 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLl---------kLLlgly~p~------sG----- 557 (703)
+.+++++++ ...|+|+||+|++||.+||+|+||||||||+ +++.+...+. +|
T Consensus 588 ~~l~v~~~~--------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~ 659 (916)
T 3pih_A 588 ASLKIKGVR--------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENID 659 (916)
T ss_dssp SEEEEEEEC--------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCC
T ss_pred ceEEEeeec--------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhcccccccccccccccccccc
Confidence 346666652 3579999999999999999999999999997 4555444333 33
Q ss_pred -eEEECCEeCCCCCh----------HHhh-------------------------------cceEEEccCCccc-------
Q 005302 558 -QILIDGFPIKEVDI----------KWLR-------------------------------GRIGFVGQEPKLF------- 588 (703)
Q Consensus 558 -~I~idG~di~~i~~----------~~lR-------------------------------~~I~~V~Qd~~LF------- 588 (703)
.|.+|+.|+..... +..| +..|++.|+..++
T Consensus 660 ~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c 739 (916)
T 3pih_A 660 KMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVEC 739 (916)
T ss_dssp EEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEEC
T ss_pred ceEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeec
Confidence 36666666643221 0111 2357787777655
Q ss_pred --------------------------cccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCCh
Q 005302 589 --------------------------RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSG 640 (703)
Q Consensus 589 --------------------------~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSG 640 (703)
+.|+.||+.|+.. ....++..++++..++ ||. .+|. .+|||
T Consensus 740 ~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~-~~~~~~~~~~L~~vGL---------~~~-~lgq~~~~LSG 808 (916)
T 3pih_A 740 DVCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKN-IPSIKRTLQVLHDVGL---------GYV-KLGQPATTLSG 808 (916)
T ss_dssp TTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTT-CHHHHHHHHHHHHTTG---------GGS-BTTCCSTTCCH
T ss_pred ccccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhc-chhHHHHHHHHHHcCC---------chh-hccCCccCCCH
Confidence 3577888887743 3333444444444444 443 3455 58999
Q ss_pred HHHHHHHHHHHhcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchhH
Q 005302 641 GQKQRIAIARAILRDP---TILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLSL 695 (703)
Q Consensus 641 GQkQRIaLARAL~r~p---~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~~ 695 (703)
||||||+|||||+++| ++||||||||+||+++++++.+.|+++ .-++=.-|-+..
T Consensus 809 GErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~ 870 (916)
T 3pih_A 809 GEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDV 870 (916)
T ss_dssp HHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred HHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999999999999876 799999999999999999999998865 235556676653
No 66
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.89 E-value=9e-27 Score=248.34 Aligned_cols=165 Identities=19% Similarity=0.230 Sum_probs=124.0
Q ss_pred HHHHHHHHhhhcCCCCccccccccccCCCCcEEEEEEEEEcCCCCCcccceeeeEE-----------------------e
Q 005302 469 GASEKVFQLMDLMPSDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNIS-----------------------V 525 (703)
Q Consensus 469 ~~~~Ri~dil~~~~e~~~~~~~~~~~~~~g~I~~~nVsF~Y~~~~~~~vL~~isl~-----------------------I 525 (703)
.++.++.+....+.+++ +....+...+.|+++||++.|. ++++++|+. +
T Consensus 16 ~~~~~l~~~~~~~~~~~---~~~~l~~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (312)
T 3aez_A 16 RQWRALRMSTPLALTEE---ELVGLRGLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDR 87 (312)
T ss_dssp HHHHGGGTTCCCCCCHH---HHHTTCCTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSS
T ss_pred HHHHHHHhcCCCCCCHH---HHHhccCCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCC
Confidence 35556655555443322 1122334456799999999994 467777764 8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCC----C
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGC----T 601 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~----~ 601 (703)
++|+.+||+||||||||||+++|+|+++|++|+ +.+++|+||++++..|++||+.+.. +
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~ 150 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFP 150 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCC
Confidence 999999999999999999999999999998764 5799999999999999999998642 2
Q ss_pred CCCCHHHHHHHHHHhchHHHHHcCCCCcc-cccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Q 005302 602 QDIKQQDIEWAAKQAYAHDFIMSLPSGYE-TLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALD 669 (703)
Q Consensus 602 ~~~~~e~i~~aa~~A~l~d~I~~LP~Gyd-T~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD 669 (703)
...+.+.+. +++..+..|+. ..+ ..|||||+||+++|||++.+|+|||||||++.+|
T Consensus 151 ~~~d~~~~~---------~~L~~l~~~~~~~~~--~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d 208 (312)
T 3aez_A 151 ESYNRRALM---------RFVTSVKSGSDYACA--PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQT 208 (312)
T ss_dssp GGBCHHHHH---------HHHHHHHTTCSCEEE--EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred hHHHHHHHH---------HHHHHhCCCcccCCc--ccCChhhhhhhhhHHHhccCCCEEEECCccccCC
Confidence 122333333 34444433443 222 3799999999999999999999999999999986
No 67
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.89 E-value=2.3e-26 Score=224.46 Aligned_cols=111 Identities=17% Similarity=0.196 Sum_probs=90.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCC---cceEEECCEeCCCCC---hHHhh-cceE----EEccCCccccccHHHHhc
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLYEPT---NGQILIDGFPIKEVD---IKWLR-GRIG----FVGQEPKLFRMDISSNIS 597 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly~p~---sG~I~idG~di~~i~---~~~lR-~~I~----~V~Qd~~LF~gTI~eNI~ 597 (703)
+++||||+||||||||+++|+|+|+|+ .|+|.+||.++.+++ .+.+| +++| +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999999 899999999988887 77888 5788 899999988 222
Q ss_pred cCCCCCCCHHHHHHHHHHhchHHHHHc-CCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEE
Q 005302 598 YGCTQDIKQQDIEWAAKQAYAHDFIMS-LPSGYETLVDDDLLSGGQKQRIAIARAILRDPTIL 659 (703)
Q Consensus 598 ~g~~~~~~~e~i~~aa~~A~l~d~I~~-LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~IL 659 (703)
+ +++ . .|+++++|.. +| ||||.|+|. |||||||||+||||++++|++.
T Consensus 77 -~-----~~~-~-----~a~l~~~i~~~l~-g~dt~i~Eg-lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V-----SEE-E-----GNDLDWIYERYLS-DYDLVITEG-FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C-----CHH-H-----HTCHHHHHHHHTT-TCSEEEEES-CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C-----Chh-h-----hhCHHHHHHhhCC-CCCEEEECC-cCCCCCcEEEEEecccCCCccC
Confidence 1 122 2 7899999999 99 999999997 9999999999999999999873
No 68
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.89 E-value=1.1e-23 Score=249.26 Aligned_cols=179 Identities=24% Similarity=0.352 Sum_probs=122.6
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHH-HhcCC-------CC---------------
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNL-LLRLY-------EP--------------- 554 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkL-Llgly-------~p--------------- 554 (703)
..|+++|+++ .+|+|+||+|++||.+||+|+||||||||++. |.|++ .|
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 3599999985 15999999999999999999999999999996 66554 23
Q ss_pred ---Ccc-------eEEECCEeCCCCCh----------HHhhcceEEEcc-------------------------------
Q 005302 555 ---TNG-------QILIDGFPIKEVDI----------KWLRGRIGFVGQ------------------------------- 583 (703)
Q Consensus 555 ---~sG-------~I~idG~di~~i~~----------~~lR~~I~~V~Q------------------------------- 583 (703)
.+| .|.+||.|+..... +.+|+.++.+++
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 467 78999998864332 334433322221
Q ss_pred CCcccc-------------------------ccHHHHhc--------cCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcc
Q 005302 584 EPKLFR-------------------------MDISSNIS--------YGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYE 630 (703)
Q Consensus 584 d~~LF~-------------------------gTI~eNI~--------~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~Gyd 630 (703)
|-..+. -||.||+. ++.. . +++ ..+.+.+..+.-++.
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~-~---~~~------~~~~~~L~~~gL~~~ 722 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD-E---SAI------FRALDTLREVGLGYL 722 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT-S---HHH------HHHHHHHHHTTCTTS
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc-c---hHH------HHHHHHHHHcCCCcc
Confidence 111121 24555554 3311 1 111 123345555544443
Q ss_pred cccCC--CCCChHHHHHHHHHHHhcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchhH
Q 005302 631 TLVDD--DLLSGGQKQRIAIARAILRD---PTILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLSL 695 (703)
Q Consensus 631 T~vGe--~~LSGGQkQRIaLARAL~r~---p~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~~ 695 (703)
.++. ..||||||||++|||||.++ |++|||||||++||+.+.+.+.+.|+++ .-++-.-|-+..
T Consensus 723 -~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~ 795 (842)
T 2vf7_A 723 -RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQV 795 (842)
T ss_dssp -BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred -cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 2344 48999999999999999996 7999999999999999999999888754 234555576654
No 69
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.89 E-value=2.3e-26 Score=247.10 Aligned_cols=191 Identities=15% Similarity=0.140 Sum_probs=134.6
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcCCCCccccccccc-cCCCCcEE---------E
Q 005302 434 NITAEQLTKFILYSEWLIYSTWWVGD-NLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKL-QRLMGRID---------F 502 (703)
Q Consensus 434 ~itvG~l~afi~y~~~~~~~~~~l~~-~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~~~~~-~~~~g~I~---------~ 502 (703)
.+|.|.+.+|+.+...+..+ .+.. ....+.....+.+|+.++++.|.... ....... ....+.++ |
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~~-~~~~~~ir~~~~~~i~l~~l~~~g~~ 151 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVND-ETISISIRIPSKTTYPHSFFEEQGFY 151 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSST-TCCEEEEECCCCCCCCHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccCC-CCceEEEeCCCCCCCCHHHHHhCCCc
Confidence 68999999998887665443 1211 11112222234567777775433211 0001001 11123456 7
Q ss_pred EEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEc
Q 005302 503 VDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVG 582 (703)
Q Consensus 503 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~ 582 (703)
+||+| | .++++++|++|++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++....+|+.+++++
T Consensus 152 ~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~ 223 (330)
T 2pt7_A 152 NLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFF 223 (330)
T ss_dssp TTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEEC
T ss_pred Cchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEe
Confidence 78888 7 258999999999999999999999999999999999999999999999976 344444566677664
Q ss_pred cCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEe
Q 005302 583 QEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILD 662 (703)
Q Consensus 583 Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILD 662 (703)
| |||+||++|||||.++|++|+||
T Consensus 224 g--------------------------------------------------------gg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 224 G--------------------------------------------------------GNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp B--------------------------------------------------------TTBCHHHHHHHHTTSCCSEEEEC
T ss_pred C--------------------------------------------------------CChhHHHHHHHHhhhCCCEEEEc
Confidence 1 89999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCC-cEEEEecchhH
Q 005302 663 EATSALDAESEHNIKVATLSNG-LLVKSLHFLSL 695 (703)
Q Consensus 663 EaTSaLD~~tE~~I~~al~~~~-~~~~~~~~~~~ 695 (703)
|||+ .+..+.+ +++.+-+ ..+-..|-.+.
T Consensus 248 E~~~---~e~~~~l-~~~~~g~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 248 ELRS---SEAYDFY-NVLCSGHKGTLTTLHAGSS 277 (330)
T ss_dssp CCCS---THHHHHH-HHHHTTCCCEEEEEECSSH
T ss_pred CCCh---HHHHHHH-HHHhcCCCEEEEEEcccHH
Confidence 9999 3444444 4444434 47888998874
No 70
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.89 E-value=2.1e-23 Score=223.25 Aligned_cols=172 Identities=21% Similarity=0.280 Sum_probs=121.6
Q ss_pred eeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC-----------------------------------------------
Q 005302 520 HVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY----------------------------------------------- 552 (703)
Q Consensus 520 ~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly----------------------------------------------- 552 (703)
++++++.+| .++|+||||||||||++.|..+.
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 568889999 99999999999999999998543
Q ss_pred ---CCCcceEEECCEeCCCCChHHhhcceEEEccCCccc-cccHHHHhccCCCCC----C-----------CHHHHHHHH
Q 005302 553 ---EPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLF-RMDISSNISYGCTQD----I-----------KQQDIEWAA 613 (703)
Q Consensus 553 ---~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF-~gTI~eNI~~g~~~~----~-----------~~e~i~~aa 613 (703)
.+.+|++.+||.+++.-+...+...+++++|+..++ .|+|.+|+... |.+ . +.+++.+..
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC----------------------CHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 445689999999987666777788899999998766 89999999875 311 0 111222221
Q ss_pred HHh------------ch-HHHHHcCCCCcccccCC--------CCCChHHHHHHHHHHHhc----CCCCEEEEeCCCCCC
Q 005302 614 KQA------------YA-HDFIMSLPSGYETLVDD--------DLLSGGQKQRIAIARAIL----RDPTILILDEATSAL 668 (703)
Q Consensus 614 ~~A------------~l-~d~I~~LP~GydT~vGe--------~~LSGGQkQRIaLARAL~----r~p~ILILDEaTSaL 668 (703)
... .+ .+....++.|+++.+++ ..||||||||++|||||. ++|++||||||||+|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 110 00 01113466688776532 379999999999999996 889999999999999
Q ss_pred CHHHHHHHHHHHHhCC---cEEEEecch
Q 005302 669 DAESEHNIKVATLSNG---LLVKSLHFL 693 (703)
Q Consensus 669 D~~tE~~I~~al~~~~---~~~~~~~~~ 693 (703)
|+++.+.+.+.|+++. ..+-.-|-.
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~ 282 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNK 282 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCT
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCH
Confidence 9999999999998763 244455643
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.88 E-value=2.1e-25 Score=245.58 Aligned_cols=145 Identities=19% Similarity=0.224 Sum_probs=120.0
Q ss_pred cccceeeeEEecCCc--------------------EEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHh
Q 005302 515 VPVLQHVNISVNPGE--------------------VVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL 574 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge--------------------~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~l 574 (703)
..+++||||+|++|| .+||+||||||||||+|+|+|+++|++|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 468999999999999 99999999999999999999999999999999998764
Q ss_pred hcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChH--HHHHHHHHHHh
Q 005302 575 RGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGG--QKQRIAIARAI 652 (703)
Q Consensus 575 R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGG--QkQRIaLARAL 652 (703)
|. ++|+|++...+-|+.||+.++.+ .+++.+.++..++.+ ++..+ .|||| ||||++|||||
T Consensus 109 ~~--~~v~q~~~~~~ltv~D~~g~~~~----~~~~~~~L~~~~L~~--------~~~~~---~lS~G~~~kqrv~la~aL 171 (413)
T 1tq4_A 109 ME--RHPYKHPNIPNVVFWDLPGIGST----NFPPDTYLEKMKFYE--------YDFFI---IISATRFKKNDIDIAKAI 171 (413)
T ss_dssp CC--CEEEECSSCTTEEEEECCCGGGS----SCCHHHHHHHTTGGG--------CSEEE---EEESSCCCHHHHHHHHHH
T ss_pred ee--EEeccccccCCeeehHhhcccch----HHHHHHHHHHcCCCc--------cCCeE---EeCCCCccHHHHHHHHHH
Confidence 22 78999986557899999988743 234566666666543 22222 29999 99999999999
Q ss_pred cC----------CCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 653 LR----------DPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 653 ~r----------~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
.+ +|++++||||||+||+.+++++.+.|+++
T Consensus 172 ~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l 212 (413)
T 1tq4_A 172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLN 212 (413)
T ss_dssp HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHH
Confidence 99 99999999999999999999988887765
No 72
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.88 E-value=1.5e-23 Score=248.67 Aligned_cols=177 Identities=27% Similarity=0.382 Sum_probs=122.2
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh-cC----CC---CCcc-------------
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL-RL----YE---PTNG------------- 557 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLl-gl----y~---p~sG------------- 557 (703)
.++++|++. ..|+||||+|++||.+||+|+||||||||++.++ |. +. |..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 589999851 3699999999999999999999999999999854 22 11 2333
Q ss_pred eEEECCEeCCCCC---hH-------Hhh---------cceEEEccCCcc---------------------c---------
Q 005302 558 QILIDGFPIKEVD---IK-------WLR---------GRIGFVGQEPKL---------------------F--------- 588 (703)
Q Consensus 558 ~I~idG~di~~i~---~~-------~lR---------~~I~~V~Qd~~L---------------------F--------- 588 (703)
.|.+||.|+..-. +. ..| +.+||++|...+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4889998885322 11 112 235777774221 1
Q ss_pred -------------------------cccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCccc-ccCC--CCCCh
Q 005302 589 -------------------------RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYET-LVDD--DLLSG 640 (703)
Q Consensus 589 -------------------------~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT-~vGe--~~LSG 640 (703)
..|+.||+.++. +. .++.+ ..+.+..+ |+.. ..+. .+|||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~--~~--~~~~~------~~~~L~~~--gL~~~~l~~~~~~LSG 848 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA--SI--PKIKR------KLETLYDV--GLGYMKLGQPATTLSG 848 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTC--SC--HHHHH------HHHHHHHT--TCSSSBTTCCGGGCCH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHh--cc--hhHHH------HHHHHHHc--CCCcccccCchhhCCH
Confidence 235666666652 21 11111 12445554 3333 3444 48999
Q ss_pred HHHHHHHHHHHhcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchhH
Q 005302 641 GQKQRIAIARAILRDP---TILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLSL 695 (703)
Q Consensus 641 GQkQRIaLARAL~r~p---~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~~ 695 (703)
|||||++|||||.++| ++|||||||++||+.+.+.+.+.|+++ .-++-.-|-+..
T Consensus 849 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~ 910 (972)
T 2r6f_A 849 GEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV 910 (972)
T ss_dssp HHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 9999999999999875 999999999999999999999988754 235556677654
No 73
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.87 E-value=5e-23 Score=244.96 Aligned_cols=178 Identities=25% Similarity=0.346 Sum_probs=119.6
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh-----cCCC---CCcce-----------
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL-----RLYE---PTNGQ----------- 558 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLl-----gly~---p~sG~----------- 558 (703)
..++++|++. .+|+|+||+|++||.+||+|+||||||||+++|+ +.+. +..|.
T Consensus 646 ~~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 717 (993)
T 2ygr_A 646 RQLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLD 717 (993)
T ss_dssp SEEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCS
T ss_pred ceEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccc
Confidence 3599999851 3699999999999999999999999999999854 2222 23443
Q ss_pred --EEECCEeCCCCC---hH-------Hhh---------cceEEEccCCcc---------------------c--------
Q 005302 559 --ILIDGFPIKEVD---IK-------WLR---------GRIGFVGQEPKL---------------------F-------- 588 (703)
Q Consensus 559 --I~idG~di~~i~---~~-------~lR---------~~I~~V~Qd~~L---------------------F-------- 588 (703)
|.+||.|+.... +. ..| +..||++|...+ |
T Consensus 718 ~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~c 797 (993)
T 2ygr_A 718 KLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPC 797 (993)
T ss_dssp EEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEEC
T ss_pred eEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeee
Confidence 566776664221 11 112 345777774211 0
Q ss_pred --------------------------cccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCccc-ccCC--CCCC
Q 005302 589 --------------------------RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYET-LVDD--DLLS 639 (703)
Q Consensus 589 --------------------------~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT-~vGe--~~LS 639 (703)
+.|+.||+.|+.. . .++.+ ..+.+..+ |+.. .++. .+||
T Consensus 798 e~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~--~--~~~~~------~~~~L~~l--gL~~~~l~~~~~~LS 865 (993)
T 2ygr_A 798 EVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP--I--AGVHR------YLRTLVDV--GLGYVRLGQPAPTLS 865 (993)
T ss_dssp TTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT--C--HHHHH------HHHHHHHT--TGGGSBTTCCGGGSC
T ss_pred hhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc--c--hHHHH------HHHHHHHc--CCCcccccCccccCC
Confidence 1245566665521 1 11111 12344444 3333 3454 4899
Q ss_pred hHHHHHHHHHHHhcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHhC----CcEEEEecchhH
Q 005302 640 GGQKQRIAIARAILRDP---TILILDEATSALDAESEHNIKVATLSN----GLLVKSLHFLSL 695 (703)
Q Consensus 640 GGQkQRIaLARAL~r~p---~ILILDEaTSaLD~~tE~~I~~al~~~----~~~~~~~~~~~~ 695 (703)
||||||++|||||+++| ++|||||||++||+.+.+.+.+.|+++ .-++-.-|-+..
T Consensus 866 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~ 928 (993)
T 2ygr_A 866 GGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDV 928 (993)
T ss_dssp HHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 99999999999999875 999999999999999999999988754 235555676654
No 74
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.87 E-value=5.3e-24 Score=207.11 Aligned_cols=138 Identities=17% Similarity=0.214 Sum_probs=95.6
Q ss_pred eeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCc--cccccHHHHhc
Q 005302 520 HVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPK--LFRMDISSNIS 597 (703)
Q Consensus 520 ~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~--LF~gTI~eNI~ 597 (703)
|+||++++||.++|+||||||||||+|++.+ |... ++.+.+| ++++|++. .+.++..+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~--- 60 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEV--------ISSDFCR---GLMSDDENDQTVTGAAFD--- 60 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGE--------EEHHHHH---HHHCSSTTCGGGHHHHHH---
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeE--------EccHHHH---HHhcCcccchhhHHHHHH---
Confidence 6899999999999999999999999999653 2222 2334444 67777752 11111111
Q ss_pred cCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHH---
Q 005302 598 YGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD-DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESE--- 673 (703)
Q Consensus 598 ~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe-~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE--- 673 (703)
++...+ ...+..|+.+.+.. ...|||||||++||||+..+|++|+|||||++||+.++
T Consensus 61 ----------~~~~~~--------~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 61 ----------VLHYIV--------SKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp ----------HHHHHH--------HHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred ----------HHHHHH--------HHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 111111 11234577777666 46799999999999999999999999999999999965
Q ss_pred -------------HHHHHHHHhC----CcEEEEecchhH
Q 005302 674 -------------HNIKVATLSN----GLLVKSLHFLSL 695 (703)
Q Consensus 674 -------------~~I~~al~~~----~~~~~~~~~~~~ 695 (703)
+.+.+.++++ ...+-.-|.+..
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~ 161 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEE 161 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHH
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHH
Confidence 6667664432 245667777654
No 75
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.87 E-value=1.5e-23 Score=205.75 Aligned_cols=127 Identities=19% Similarity=0.177 Sum_probs=96.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHH
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDI 609 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i 609 (703)
+++|+||||||||||+|+|+|++. |.++|.+..+......++.+|+++|++ |..+|+. ..- ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~-~~----- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSK-FF----- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EET-TC-----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhh-cC-----
Confidence 689999999999999999999995 677887765443225678999999987 3344541 100 00
Q ss_pred HHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHH-----hcCCCCEEEEeC--CCCCCCHHHHHHHHHHH
Q 005302 610 EWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARA-----ILRDPTILILDE--ATSALDAESEHNIKVAT 680 (703)
Q Consensus 610 ~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARA-----L~r~p~ILILDE--aTSaLD~~tE~~I~~al 680 (703)
+ .+..++. .+||||||||++|||| ++.+|++||||| ||++||+...+.+.+.+
T Consensus 65 ----------------~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l 126 (178)
T 1ye8_A 65 ----------------T--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIM 126 (178)
T ss_dssp ----------------C--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHH
T ss_pred ----------------C--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHH
Confidence 0 0134454 4899999999999996 999999999999 99999999999999999
Q ss_pred HhCCc-EEEEec
Q 005302 681 LSNGL-LVKSLH 691 (703)
Q Consensus 681 ~~~~~-~~~~~~ 691 (703)
++.+. .+-..|
T Consensus 127 ~~~~~~~i~~~H 138 (178)
T 1ye8_A 127 HDPNVNVVATIP 138 (178)
T ss_dssp TCTTSEEEEECC
T ss_pred hcCCCeEEEEEc
Confidence 88666 566665
No 76
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.85 E-value=4.1e-26 Score=248.14 Aligned_cols=224 Identities=16% Similarity=0.085 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHh-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccccccccc-CCCC
Q 005302 421 IAVLIGGMFIMR-GNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKLQ-RLMG 498 (703)
Q Consensus 421 iil~~g~~lv~~-G~itvG~l~afi~y~~~~~~~~~~l~~~~~~l~~~~~~~~Ri~dil~~~~e~~~~~~~~~~~-~~~g 498 (703)
.+.+.|++.+.+ |.+|.|.+.+|+.|...+..+ .+......+.....+.+|+.+++ +|+........... ...+
T Consensus 50 ~v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~ 125 (361)
T 2gza_A 50 FCERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFT 125 (361)
T ss_dssp EEEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCC
T ss_pred EEEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCC
Confidence 344567766666 899999999999887766544 22222122222333567888777 33322110011111 1123
Q ss_pred cE---------EEEEEEEE---cCCCCCcccc---------eeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc
Q 005302 499 RI---------DFVDVSFR---YSSREMVPVL---------QHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG 557 (703)
Q Consensus 499 ~I---------~~~nVsF~---Y~~~~~~~vL---------~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG 557 (703)
.+ +|+||+|+ |++. ++++| +++||+|++|+.++|+||||||||||+++|+|+++|++|
T Consensus 126 ~itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g 204 (361)
T 2gza_A 126 RRTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQR 204 (361)
T ss_dssp CCCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSC
T ss_pred CCCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCce
Confidence 45 89999999 9742 24566 999999999999999999999999999999999999999
Q ss_pred eEEECCEeCCCCChHHhhcceEEEc-cCCcc---ccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCccccc
Q 005302 558 QILIDGFPIKEVDIKWLRGRIGFVG-QEPKL---FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLV 633 (703)
Q Consensus 558 ~I~idG~di~~i~~~~lR~~I~~V~-Qd~~L---F~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~v 633 (703)
.|.++|. .++....+|+.+++|+ |++.+ +..|+++||+++.. ..++..+...++.+.+++++.++|.|++|.+
T Consensus 205 ~I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~-~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l 281 (361)
T 2gza_A 205 LITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLR-MKPTRILLAELRGGEAYDFINVAASGHGGSI 281 (361)
T ss_dssp EEEEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTT-SCCSEEEESCCCSTHHHHHHHHHHTTCCSCE
T ss_pred EEEECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHh-cCCCEEEEcCchHHHHHHHHHHHhcCCCeEE
Confidence 9999985 4666666889999999 99887 89999999998754 3334444445566788899999999999999
Q ss_pred CC--CCCChHHHHHHHHHHHh
Q 005302 634 DD--DLLSGGQKQRIAIARAI 652 (703)
Q Consensus 634 Ge--~~LSGGQkQRIaLARAL 652 (703)
++ .+-+.+..+|+.....-
T Consensus 282 ~t~H~~~~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 282 TSCHAGSCELTFERLALMVLQ 302 (361)
T ss_dssp EEEECSSHHHHHHHHHHHHTT
T ss_pred EEECCCCHHHHHHHHHHHHhc
Confidence 87 45588889999887643
No 77
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.84 E-value=3.1e-23 Score=216.67 Aligned_cols=138 Identities=18% Similarity=0.125 Sum_probs=88.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccc-cHHHHhccCCCCC--CCH
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRM-DISSNISYGCTQD--IKQ 606 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~~~--~~~ 606 (703)
++|||||||||||||+|+|+|++.|++|+|.++|.++.. ...++.+++|+|++.++.. |+.||+.|+.... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999998843 3457889999999998865 9999999986311 112
Q ss_pred HHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcE
Q 005302 607 QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGLL 686 (703)
Q Consensus 607 e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~ 686 (703)
+.+.+..+ .++-..++ ..||||||||+++|||+.. +++|||||+.||+.. ..+.+.+.+...+
T Consensus 81 ~~i~~~~~----~~~~~~~~---------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~~~~~v 143 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK---------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLSKVVNI 143 (270)
T ss_dssp HHHHHHHH----HHHHHHHH---------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHHTTSEE
T ss_pred HHHHHHHH----HHHHhhhH---------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHHhcCcE
Confidence 33433333 22222211 2599999999999999886 999999999999976 4555666654333
Q ss_pred E
Q 005302 687 V 687 (703)
Q Consensus 687 ~ 687 (703)
+
T Consensus 144 I 144 (270)
T 3sop_A 144 I 144 (270)
T ss_dssp E
T ss_pred E
Confidence 3
No 78
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.82 E-value=6.2e-23 Score=223.20 Aligned_cols=146 Identities=21% Similarity=0.252 Sum_probs=116.2
Q ss_pred cceeeeEEecC--CcEEEEEcCCCCcHHHHHHHHhcCCCCCc----ceEEE----CCEeCCCCChHHhhcceEEEccCCc
Q 005302 517 VLQHVNISVNP--GEVVAIAGLSGSGKSTLVNLLLRLYEPTN----GQILI----DGFPIKEVDIKWLRGRIGFVGQEPK 586 (703)
Q Consensus 517 vL~~isl~I~~--Ge~vAIVG~SGsGKSTLlkLLlgly~p~s----G~I~i----dG~di~~i~~~~lR~~I~~V~Qd~~ 586 (703)
+.+.|+++|++ |+++||+||||||||||+++|+|+|+|++ |+|++ +|.++ .++.+++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45679999999 99999999999999999999999999999 99987 46666 5566666 56999999999
Q ss_pred cccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCC--ccccc-CC---------CCCChHHHHHHHHHHHh--
Q 005302 587 LFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSG--YETLV-DD---------DLLSGGQKQRIAIARAI-- 652 (703)
Q Consensus 587 LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~G--ydT~v-Ge---------~~LSGGQkQRIaLARAL-- 652 (703)
+|++|++|||.+++. +..+..+.......+..+++.+++.+ ++..+ +| .++||||+||++++|+|
T Consensus 235 ~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~ 313 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDT-DFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKK 313 (365)
T ss_dssp HHHHHHCSSEEEESS-CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHH
T ss_pred HHHHhccCCEEEEeC-CchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHH
Confidence 999999999999865 55556666666666667777777644 55533 32 36999999999999999
Q ss_pred -cC--CCCEEEEeCCC
Q 005302 653 -LR--DPTILILDEAT 665 (703)
Q Consensus 653 -~r--~p~ILILDEaT 665 (703)
++ +++++++||||
T Consensus 314 l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 314 LLDKYKVPYIEIESPS 329 (365)
T ss_dssp HHHGGGCCCEEEECSS
T ss_pred HHHHcCCCEEEeCCCC
Confidence 87 89999999997
No 79
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.81 E-value=3.2e-23 Score=215.61 Aligned_cols=157 Identities=18% Similarity=0.224 Sum_probs=127.9
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-cceEEECCEeCCCCChHHhhcceEEEcc-----CCcccc
Q 005302 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT-NGQILIDGFPIKEVDIKWLRGRIGFVGQ-----EPKLFR 589 (703)
Q Consensus 516 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~-sG~I~idG~di~~i~~~~lR~~I~~V~Q-----d~~LF~ 589 (703)
++|+|+| +++|+.++|+|||||||||++++|+|+++|+ +|+|.++|.|+..+. ++.+++|+| ++..|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~gl~~~~l~ 88 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFA 88 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHhCCCHHHHH
Confidence 4899999 9999999999999999999999999999998 999999999986542 455678888 777789
Q ss_pred ccHHHHhccCCCCCC-------CHHHHHHHHHHhch-----------------HHHH------------HcCCCCccccc
Q 005302 590 MDISSNISYGCTQDI-------KQQDIEWAAKQAYA-----------------HDFI------------MSLPSGYETLV 633 (703)
Q Consensus 590 gTI~eNI~~g~~~~~-------~~e~i~~aa~~A~l-----------------~d~I------------~~LP~GydT~v 633 (703)
.+|+.++... | ++ |.+.++++++.+.- +..+ ..+++++++.|
T Consensus 89 ~~la~aL~~~-p-~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi 166 (261)
T 2eyu_A 89 DALRAALRED-P-DVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGII 166 (261)
T ss_dssp HHHHHHHHHC-C-SEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEE
T ss_pred HHHHHHHhhC-C-CEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHhhEEE
Confidence 9999999874 4 55 78877777765531 1211 12456899999
Q ss_pred CCC--CCChHHHHHHHHHHHhcCCCCE--EEEeCCCCCCCHHH---------HHHHHHHHHh
Q 005302 634 DDD--LLSGGQKQRIAIARAILRDPTI--LILDEATSALDAES---------EHNIKVATLS 682 (703)
Q Consensus 634 Ge~--~LSGGQkQRIaLARAL~r~p~I--LILDEaTSaLD~~t---------E~~I~~al~~ 682 (703)
++. .+||| ||+++||+++.+|+| +|+||+||++|... |..++++++.
T Consensus 167 ~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ 226 (261)
T 2eyu_A 167 SQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKL 226 (261)
T ss_dssp EEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHH
T ss_pred EEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHH
Confidence 984 88999 999999999999999 99999999999873 3455666543
No 80
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.81 E-value=5.7e-23 Score=224.20 Aligned_cols=158 Identities=16% Similarity=0.207 Sum_probs=129.9
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-cceEEECCEeCCCCChHHhhcceEEEcc-----CCcccc
Q 005302 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT-NGQILIDGFPIKEVDIKWLRGRIGFVGQ-----EPKLFR 589 (703)
Q Consensus 516 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~-sG~I~idG~di~~i~~~~lR~~I~~V~Q-----d~~LF~ 589 (703)
++|++++ +++|+.++|+|||||||||++++|+|+++|+ +|+|.++|.|+. + .+++.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4677765 8999999999999999999999999999998 899988887764 2 36788999999 899999
Q ss_pred ccHHHHhccCCCCCC-------CHHHHHHHHHHhchH-----------------HHH------------HcCCCCccccc
Q 005302 590 MDISSNISYGCTQDI-------KQQDIEWAAKQAYAH-----------------DFI------------MSLPSGYETLV 633 (703)
Q Consensus 590 gTI~eNI~~g~~~~~-------~~e~i~~aa~~A~l~-----------------d~I------------~~LP~GydT~v 633 (703)
++|++|++.. | +. |.+.+..+++.++.. ..+ ..++.++++.|
T Consensus 200 ~~l~~~L~~~-p-d~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv 277 (372)
T 2ewv_A 200 DALRAALRED-P-DVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGII 277 (372)
T ss_dssp HHHHHHTTSC-C-SEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEE
T ss_pred HHHHHHhhhC-c-CEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEE
Confidence 9999999984 5 66 888888888877531 121 12366899999
Q ss_pred CC--CCCChHHHHHHHHHHHhcCCCCE--EEEeCCCCCCCHH----H-----HHHHHHHHHhC
Q 005302 634 DD--DLLSGGQKQRIAIARAILRDPTI--LILDEATSALDAE----S-----EHNIKVATLSN 683 (703)
Q Consensus 634 Ge--~~LSGGQkQRIaLARAL~r~p~I--LILDEaTSaLD~~----t-----E~~I~~al~~~ 683 (703)
++ ..+||| ||+++||+++.+|+| +|+||+||+||.. + |..++++++..
T Consensus 278 ~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~ 338 (372)
T 2ewv_A 278 SQRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLY 338 (372)
T ss_dssp EEEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTT
T ss_pred EEEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHH
Confidence 88 378999 999999999999999 9999999999965 3 34567776654
No 81
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.80 E-value=1.2e-21 Score=207.92 Aligned_cols=137 Identities=16% Similarity=0.214 Sum_probs=102.8
Q ss_pred eeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC----hHHh--hcceEEEccCCc-ccc-c
Q 005302 519 QHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD----IKWL--RGRIGFVGQEPK-LFR-M 590 (703)
Q Consensus 519 ~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~----~~~l--R~~I~~V~Qd~~-LF~-g 590 (703)
+++||++++|+.++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..| |..|++|+|++. ++. .
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4688999999999999999999999999999999999999999999987653 2344 457999999987 554 6
Q ss_pred cHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCC--EEEEeCCCC
Q 005302 591 DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPT--ILILDEATS 666 (703)
Q Consensus 591 TI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~--ILILDEaTS 666 (703)
|++||+.++...+.+. ..++.+ |....... ..|| |||++||||+..+|+ +|+|| ||+
T Consensus 171 ~v~e~l~~~~~~~~d~----~lldt~-----------gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYDV----VLCDTS-----------GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHTTCSE----EEECCC-----------CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHcCCcc----hHHhcC-----------CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 8999998752111110 001111 11111001 2588 999999999999999 99999 999
Q ss_pred CCCHHHHH
Q 005302 667 ALDAESEH 674 (703)
Q Consensus 667 aLD~~tE~ 674 (703)
+||+.+..
T Consensus 232 glD~~~~~ 239 (302)
T 3b9q_A 232 GLNMLPQA 239 (302)
T ss_dssp GGGGHHHH
T ss_pred CcCHHHHH
Confidence 99998764
No 82
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.78 E-value=5.8e-21 Score=212.31 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=122.8
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE---eCCCC-----
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF---PIKEV----- 569 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~---di~~i----- 569 (703)
+.++++||++.|+.+ ..+|+++ |+|++||+++|+||||||||||+++|+|+++|++|.|.++|+ ++.++
T Consensus 130 ~~l~~~~v~~~~~tg--~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG--VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCCS--CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCCC--ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 468999999999732 5799999 999999999999999999999999999999999999999998 56543
Q ss_pred ChHHhhcceEEEccC-C-ccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcc--cccCC-CCCChHHHH
Q 005302 570 DIKWLRGRIGFVGQE-P-KLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYE--TLVDD-DLLSGGQKQ 644 (703)
Q Consensus 570 ~~~~lR~~I~~V~Qd-~-~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~Gyd--T~vGe-~~LSGGQkQ 644 (703)
+...+++.+++|+|+ . ....-|+.+|+.+.. +... . .|.+ -.+.+ .+||||| |
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a-------e~~~------------~--~~~~v~~~ld~l~~lS~g~-q 264 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA-------EDFR------------D--RGQHVLLIMDSLTRYAMAQ-R 264 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH-------HHHH------------T--TTCEEEEEEECHHHHHHHH-H
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH-------HHHH------------h--CCCCHHHHHHhHHHHHHHH-H
Confidence 245688999999995 3 344568888887641 1110 0 1111 11222 4799999 9
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 645 RIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 645 RIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
|++|| +++|++ |++||+.++..+.+.++++..
T Consensus 265 rvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~ 296 (438)
T 2dpy_A 265 EIALA---IGEPPA------TKGYPPSVFAKLPALVERAGN 296 (438)
T ss_dssp HHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSC
T ss_pred HHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHh
Confidence 99999 899998 999999999999999988754
No 83
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.78 E-value=1.4e-22 Score=201.78 Aligned_cols=138 Identities=18% Similarity=0.254 Sum_probs=111.8
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCCC-------------CCcceEEECCEeCCCCChHHhhcceEEEccCCcccccc
Q 005302 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLYE-------------PTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMD 591 (703)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-------------p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gT 591 (703)
+++|+.++|+||||||||||+++|+|+++ |.+|+ +||+++..++.+.+|+.+ .|++++|.+|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999996 88998 699999999999999886 7999999999
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHH-HhcCCCCEEEEeCCCCCCCH
Q 005302 592 ISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR-AILRDPTILILDEATSALDA 670 (703)
Q Consensus 592 I~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR-AL~r~p~ILILDEaTSaLD~ 670 (703)
+.+|+ +|. ++++++++++.+.+.-+ .-.|.|+++.... ++ .|| +++++|++++|||+||++|.
T Consensus 76 ~~~n~-~g~----~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~---------~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 76 FSGNL-YGT----SKEAVRAVQAMNRICVL-DVDLQGVRSIKKT---------DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp ETTEE-EEE----EHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS---------SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred ecCcc-CCC----CHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc---------CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 99998 773 57889888876432211 1245677765421 22 677 89999999999999999999
Q ss_pred HHHHHHHHHHHhC
Q 005302 671 ESEHNIKVATLSN 683 (703)
Q Consensus 671 ~tE~~I~~al~~~ 683 (703)
++|+.|++.|.+.
T Consensus 140 ~~e~~i~~~l~~~ 152 (198)
T 1lvg_A 140 ETEESLAKRLAAA 152 (198)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988654
No 84
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.78 E-value=6.9e-21 Score=206.18 Aligned_cols=137 Identities=16% Similarity=0.214 Sum_probs=104.2
Q ss_pred eeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC----hHHh--hcceEEEccCCc-cc-cc
Q 005302 519 QHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD----IKWL--RGRIGFVGQEPK-LF-RM 590 (703)
Q Consensus 519 ~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~----~~~l--R~~I~~V~Qd~~-LF-~g 590 (703)
+.+||++++|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..| |..|++|+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578999999999999999999999999999999999999999999987643 2334 567999999986 54 56
Q ss_pred cHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCC--EEEEeCCCC
Q 005302 591 DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPT--ILILDEATS 666 (703)
Q Consensus 591 TI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~--ILILDEaTS 666 (703)
|+.|||.++.....+. ..++.+ |....... ..|| |||++||||+..+|+ +|+|| ||+
T Consensus 228 tv~e~l~~~~~~~~d~----~lldt~-----------Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptt 288 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDV----VLCDTS-----------GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 288 (359)
T ss_dssp HHHHHHHHHHHTTCSE----EEEECC-----------CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGG
T ss_pred hHHHHHHHHHhCCCHH----HHHHhc-----------CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCC
Confidence 8999998752111110 001111 11111001 2588 999999999999999 99999 999
Q ss_pred CCCHHHHH
Q 005302 667 ALDAESEH 674 (703)
Q Consensus 667 aLD~~tE~ 674 (703)
++|+.+..
T Consensus 289 glD~~~~~ 296 (359)
T 2og2_A 289 GLNMLPQA 296 (359)
T ss_dssp GGGGHHHH
T ss_pred CCCHHHHH
Confidence 99998764
No 85
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.76 E-value=1.4e-20 Score=186.66 Aligned_cols=165 Identities=19% Similarity=0.202 Sum_probs=103.7
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC-----CCCcceEEE-------CCEeCC
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY-----EPTNGQILI-------DGFPIK 567 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly-----~p~sG~I~i-------dG~di~ 567 (703)
|+++|++|+|+ .+++++ |++++|++++|+|++|||||||++.|+|.. .|+.|.+.. ++..+-
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999996 257888 899999999999999999999999999999 899998765 233321
Q ss_pred ---CCC--------hHHhhcceEEEccCCccccc-cHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccc-cC
Q 005302 568 ---EVD--------IKWLRGRIGFVGQEPKLFRM-DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETL-VD 634 (703)
Q Consensus 568 ---~i~--------~~~lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~-vG 634 (703)
.+. .+.+++.++.+.|+...+++ ++..|++.+. ...++++.+.++. .+.... ++
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--~~~~~~~~~~~~~-----------~~~~~~~v~ 144 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL--KDLDQQMIEWAVD-----------SNIAVLVLL 144 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--CHHHHHHHHHHHH-----------TTCCEEEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC--chhHHHHHHHHHH-----------cCCCeEEEE
Confidence 111 13456666666665443333 3444444431 1112233322221 122222 23
Q ss_pred C--CCCChHHHHH-HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 635 D--DLLSGGQKQR-IAIARAILRDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 635 e--~~LSGGQkQR-IaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
. ..+|+||||| +..||+++++|+.+++|||||++|.++-..+.+.|.+.
T Consensus 145 nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 145 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred ecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 3 3799999999 89999999999999999999999999999998888653
No 86
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.76 E-value=3.4e-18 Score=186.06 Aligned_cols=59 Identities=27% Similarity=0.307 Sum_probs=52.3
Q ss_pred CCChHHHHHHHHHHHhc------CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchhH
Q 005302 637 LLSGGQKQRIAIARAIL------RDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLSL 695 (703)
Q Consensus 637 ~LSGGQkQRIaLARAL~------r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~~ 695 (703)
+||||||||++|||||. ++|++|||||||++||+++.+.+.+.|+++. -++=.-|-+..
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~ 347 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF 347 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH
T ss_pred hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH
Confidence 79999999999999999 8999999999999999999999999998763 35556677654
No 87
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.75 E-value=9.9e-21 Score=199.66 Aligned_cols=129 Identities=11% Similarity=0.082 Sum_probs=96.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCC--
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQD-- 603 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~-- 603 (703)
+++.+|||+|+||||||||+++|.+++.++ |. . ++.+.+|+||+++|++++++|+.++++.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~--------------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG--------------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG--------------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC--------------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 467899999999999999999999999874 20 1 56677779999999999999998763200
Q ss_pred CCHHHHHHHHHHhchHHHHHcCCCCcccccC------C--CCCChHHHHHHHHH--HHhcCCCCEEEEeCCCCCCCHHH
Q 005302 604 IKQQDIEWAAKQAYAHDFIMSLPSGYETLVD------D--DLLSGGQKQRIAIA--RAILRDPTILILDEATSALDAES 672 (703)
Q Consensus 604 ~~~e~i~~aa~~A~l~d~I~~LP~GydT~vG------e--~~LSGGQkQRIaLA--RAL~r~p~ILILDEaTSaLD~~t 672 (703)
.+....-++.+.+.+.+++..++.|++|..+ . .++||||+||+++| |++ +|+|||+||+|+++|+++
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000011233455778999999999987543 2 48999999999998 666 999999999999999864
No 88
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.74 E-value=9.5e-21 Score=189.09 Aligned_cols=128 Identities=15% Similarity=0.197 Sum_probs=102.5
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccc---cHHHHhc--cC
Q 005302 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRM---DISSNIS--YG 599 (703)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~g---TI~eNI~--~g 599 (703)
.++|+.+||+||||||||||+++|.|++.| .+++|+||+++++. |+.+|+. ++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 589999999999999999999999999975 68999999999865 4666554 44
Q ss_pred CCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChH----HHHHHHHHHHhcCCCCEEEEeCCCCC-------C
Q 005302 600 CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGG----QKQRIAIARAILRDPTILILDEATSA-------L 668 (703)
Q Consensus 600 ~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGG----QkQRIaLARAL~r~p~ILILDEaTSa-------L 668 (703)
.+...+.+++.++++..++.+++.. | +++ +|+| |+||+++||+++.+|+++++||||++ |
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~-------~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P-VYD-------FRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C-CEE-------TTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C-ccc-------CcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 3334567888888888777665543 3 444 5555 46899999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHhC
Q 005302 669 DAESEHNIKVATLSN 683 (703)
Q Consensus 669 D~~tE~~I~~al~~~ 683 (703)
|+.++.++.+.+++.
T Consensus 132 d~~~~~~~~r~l~r~ 146 (211)
T 3asz_A 132 DADADERFIRRLKRD 146 (211)
T ss_dssp ECCHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHH
Confidence 999999998888764
No 89
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.74 E-value=8.3e-20 Score=180.84 Aligned_cols=131 Identities=19% Similarity=0.232 Sum_probs=105.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHH
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQ 607 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e 607 (703)
||+++|+||||||||||+++|+|+++ ++| |.+||.+..++. .+++++|+++|+. +|+ ++|+.-... ..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~-~~~-- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGL-EPP-- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCC-CCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccc-cCC--
Confidence 89999999999999999999999999 999 999999987543 5799999999986 554 455543211 100
Q ss_pred HHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHH-HHHH---HhcCCCCEEEEeC--CCCCCCHHHHHHHHHH
Q 005302 608 DIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRI-AIAR---AILRDPTILILDE--ATSALDAESEHNIKVA 679 (703)
Q Consensus 608 ~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRI-aLAR---AL~r~p~ILILDE--aTSaLD~~tE~~I~~a 679 (703)
+...+..+|+ ..+|||||+++ +++| |+.++|++||||| ||..+|.+..+.+.+.
T Consensus 70 ------------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 70 ------------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp ------------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred ------------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 1123447776 47999999999 6666 7999999999999 8999999999999999
Q ss_pred HHhCCcEE
Q 005302 680 TLSNGLLV 687 (703)
Q Consensus 680 l~~~~~~~ 687 (703)
+++....+
T Consensus 132 l~~~~~~i 139 (189)
T 2i3b_A 132 LSTPGTII 139 (189)
T ss_dssp HHCSSCCE
T ss_pred HhCCCcEE
Confidence 98765544
No 90
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.73 E-value=1e-19 Score=186.69 Aligned_cols=132 Identities=11% Similarity=0.119 Sum_probs=88.6
Q ss_pred CcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHH
Q 005302 514 MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDIS 593 (703)
Q Consensus 514 ~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~ 593 (703)
+.++|+|+||++++|+.+||+||||||||||+++|.|++ |.+.+| ..++.+++|+||++...-|..
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 357999999999999999999999999999999999987 666655 368899999999855556899
Q ss_pred HHhccCCC-------CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCC
Q 005302 594 SNISYGCT-------QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATS 666 (703)
Q Consensus 594 eNI~~g~~-------~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTS 666 (703)
||+.+... ...+.+++.+.++. +..+.+..+ ..+||||+||+++ ||+..+|+++|||||..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------l~~~~~~~~--~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~ 144 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKN---------IVEGKTVEV--PTYDFVTHSRLPE-TTVVYPADVVLFEGILV 144 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHH---------HHTTCCEEE--CCEETTTTEECSS-CEEECCCSEEEEECTTT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHH---------HHCCCCeec--ccccccccCccCc-eEEecCCCEEEEeCccc
Confidence 99864321 01223333333322 212222222 4799999999988 79999999999999988
Q ss_pred CCCHH
Q 005302 667 ALDAE 671 (703)
Q Consensus 667 aLD~~ 671 (703)
..|..
T Consensus 145 ~~~~~ 149 (245)
T 2jeo_A 145 FYSQE 149 (245)
T ss_dssp TTSHH
T ss_pred cccHH
Confidence 77753
No 91
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.68 E-value=1.2e-17 Score=180.22 Aligned_cols=155 Identities=14% Similarity=0.136 Sum_probs=120.1
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC-------CC
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE-------VD 570 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~-------i~ 570 (703)
..++.+|+++.|+.+ ..+++++ |+|++||+++|+||||||||||+++|+|+.+|+.|.|.++|++.++ ..
T Consensus 44 ~~i~~~~l~~~~~tg--~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~ 120 (347)
T 2obl_A 44 DPLLRQVIDQPFILG--VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLP 120 (347)
T ss_dssp CSTTCCCCCSEECCS--CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSC
T ss_pred CCeeecccceecCCC--CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhh
Confidence 358899999999732 5799999 9999999999999999999999999999999999999999976322 12
Q ss_pred hHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCccccc--CC-CCCChHHHHHHH
Q 005302 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLV--DD-DLLSGGQKQRIA 647 (703)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~v--Ge-~~LSGGQkQRIa 647 (703)
...+++.+.++.|.+ ....+++..+.....+.++... .|.+..+ .. .+||+|| ||++
T Consensus 121 ~~~~~~~v~~~~~~~-----------------~~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~ 180 (347)
T 2obl_A 121 QSTLSKCVLVVTTSD-----------------RPALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVG 180 (347)
T ss_dssp HHHHTTEEEEEECTT-----------------SCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHH
T ss_pred hhhhhceEEEEECCC-----------------CCHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHH
Confidence 233555566666632 1124566666666666666544 4555433 22 4899999 9999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 648 IARAILRDPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 648 LARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
+| +.+|++ |++||+.....+.+.+++..
T Consensus 181 la---l~~p~~------t~Gldp~~~~~l~~ller~~ 208 (347)
T 2obl_A 181 LA---SGEPDV------RGGFPPSVFSSLPKLLERAG 208 (347)
T ss_dssp HH---TTCCCC------BTTBCHHHHHHHHHHHTTCE
T ss_pred HH---cCCCCc------ccCCCHHHHHHHHHHHHHHh
Confidence 99 688987 99999999999999998874
No 92
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.67 E-value=1e-16 Score=173.57 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=46.1
Q ss_pred CCChHHHHHHHHHHHhc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 637 LLSGGQKQRIAIARAIL---------RDPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 637 ~LSGGQkQRIaLARAL~---------r~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
.||||||||++|||||. .+|+||+||||||+||+...+.+.+.+.++.
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~ 321 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP 321 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC
Confidence 59999999999999999 8999999999999999999999999998874
No 93
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.67 E-value=9.9e-19 Score=174.76 Aligned_cols=156 Identities=17% Similarity=0.090 Sum_probs=94.7
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccc-cHH
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRM-DIS 593 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~g-TI~ 593 (703)
.++++| .+|++||++||+||||||||||+|+|+|+++ +|.+++.....-.....++.++|++|++.+|.. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 578998 7999999999999999999999999999996 355554222111112346789999999988763 455
Q ss_pred HHhccC----C---CCCCCHHHHHHHH----------HHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCC
Q 005302 594 SNISYG----C---TQDIKQQDIEWAA----------KQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (703)
Q Consensus 594 eNI~~g----~---~~~~~~e~i~~aa----------~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p 656 (703)
||+... . ....+.+++.+.+ +..++.+.....|. .|| ||+.+|
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---------~lS-----------~l~~~p 142 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE---------AVT-----------VFLAPP 142 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT---------SEE-----------EEEECS
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC---------cEE-----------EEEECC
Confidence 555311 0 0011233443333 33344444344332 234 899999
Q ss_pred CEEEEeCCCCCC----CHHHHHHHHHHHHhCC-----cEEEEecchhHH
Q 005302 657 TILILDEATSAL----DAESEHNIKVATLSNG-----LLVKSLHFLSLY 696 (703)
Q Consensus 657 ~ILILDEaTSaL----D~~tE~~I~~al~~~~-----~~~~~~~~~~~~ 696 (703)
++++|||||+++ |+...+++.+.++++. ..+=.-|-+..-
T Consensus 143 ~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~ 191 (207)
T 1znw_A 143 SWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESA 191 (207)
T ss_dssp CHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHH
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHH
Confidence 999999999998 6778888887776542 455556765543
No 94
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.65 E-value=7.8e-18 Score=178.44 Aligned_cols=142 Identities=18% Similarity=0.152 Sum_probs=68.6
Q ss_pred EEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC-CCCCcceEEECCEeCCCCChHHhhcceEEE
Q 005302 503 VDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL-YEPTNGQILIDGFPIKEVDIKWLRGRIGFV 581 (703)
Q Consensus 503 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl-y~p~sG~I~idG~di~~i~~~~lR~~I~~V 581 (703)
+||+++|.. ..++++++|+| +|+||||+|||||++.|.|. ..|++| |.++|.++.. .. -++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~--~~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV--QIEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc--eEeeEEEE
Confidence 478899973 46999999998 99999999999999999998 889999 9999988754 21 14678999
Q ss_pred ccCCcc-ccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEE
Q 005302 582 GQEPKL-FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILI 660 (703)
Q Consensus 582 ~Qd~~L-F~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILI 660 (703)
+|++.+ ..-||.||..++.. ..+.++..... +++... ++..+ ..+|||||||+.+|||+. +|+
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~-~~~~e~~~~l~------~~l~~~---~~~~~--~~~sgg~rqrv~~ara~~----ll~ 132 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDA-INCRDCFKTII------SYIDEQ---FERYL--HDESGLNRRHIIDNRVHC----CFY 132 (301)
T ss_dssp EC---CCEEEEEEEEC------------CTTHH------HHHHHH---HHHHH--HHHTSSCCTTCCCCCCCE----EEE
T ss_pred ecCCCcccCcchhhhhhhhhh-cCcHHHHHHHH------HHHHHH---HHHHH--HHhCHHhhhhhhhhhhhh----eee
Confidence 998765 45689999888742 11111111111 111110 01110 359999999999999996 999
Q ss_pred EeCCCCC-CCHHHH
Q 005302 661 LDEATSA-LDAESE 673 (703)
Q Consensus 661 LDEaTSa-LD~~tE 673 (703)
+||||++ ||+...
T Consensus 133 ldePt~~~Ld~~~~ 146 (301)
T 2qnr_A 133 FISPFGHGLKPLDV 146 (301)
T ss_dssp EECSSSSSCCHHHH
T ss_pred eecCcccCCCHHHH
Confidence 9999986 999874
No 95
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=5.8e-18 Score=186.86 Aligned_cols=152 Identities=16% Similarity=0.132 Sum_probs=93.1
Q ss_pred CcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
+.|+++||+++|++ ..+++|+||+| +|||+||||||||++.|+|+..|+.| .+|.++... ....++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeee
Confidence 46899999999974 46999999998 99999999999999999999987666 245444321 1122467
Q ss_pred eEEEccCCccc-cccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCC
Q 005302 578 IGFVGQEPKLF-RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (703)
Q Consensus 578 I~~V~Qd~~LF-~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p 656 (703)
+++++|++.++ .-||.||+.++.. .+.++.++. +.++|.+ .++++++||++||||++++|
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~--~~~~~~~~~-----i~~~i~~------------~~~~~l~qr~~IaRal~~d~ 137 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDA--VDNSNCWQP-----VIDYIDS------------KFEDYLNAESRVNRRQMPDN 137 (418)
T ss_dssp EECC------CEEEEEEECC-------------CHH-----HHHHHHH------------HHHHHTTTSCC-CCCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhh--ccchhhHHH-----HHHHHHH------------HHHHHHHHHHHHHHHhccCC
Confidence 99999998876 6799999999843 222222111 2233332 35567788999999999999
Q ss_pred C---EEEEeCCC-CCCCHHHHHHHHHHHHh
Q 005302 657 T---ILILDEAT-SALDAESEHNIKVATLS 682 (703)
Q Consensus 657 ~---ILILDEaT-SaLD~~tE~~I~~al~~ 682 (703)
+ +|++|||| ++||+... .+.+.+..
T Consensus 138 ~~~vlL~ldePt~~~L~~~d~-~~lk~L~~ 166 (418)
T 2qag_C 138 RVQCCLYFIAPSGHGLKPLDI-EFMKRLHE 166 (418)
T ss_dssp -CCEEEEECCC-CCSCCHHHH-HHHHHHTT
T ss_pred CeeEEEEEecCcccCCCHHHH-HHHHHHhc
Confidence 9 99999999 58998764 44455543
No 96
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.64 E-value=1.1e-16 Score=188.53 Aligned_cols=142 Identities=18% Similarity=0.215 Sum_probs=108.1
Q ss_pred CCcEEEEEEEEEcCCC--CCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-CCcceEEECCEeCCCCChHH
Q 005302 497 MGRIDFVDVSFRYSSR--EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-PTNGQILIDGFPIKEVDIKW 573 (703)
Q Consensus 497 ~g~I~~~nVsF~Y~~~--~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-p~sG~I~idG~di~~i~~~~ 573 (703)
.+.|++++. ++|-- .+..|++|+||+ |+.++|+|||||||||++|+++|+.. |+.|.+. | .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 457999988 55531 136799999999 99999999999999999999999974 7888753 1 1
Q ss_pred hhcceEEEccCCcccc-ccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 574 LRGRIGFVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 574 lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
.+..+++|+| +|. -++.||+.. .+|+|++|++.+|+++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il 650 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALIL 650 (765)
T ss_dssp SEEEECCCSE---EEEECCC--------------------------------------------CCSHHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHH
Confidence 2456888877 444 355555543 2589999999999999
Q ss_pred --cCCCCEEEEeCC---CCCCCHHHH-HHHHHHHHhC-CcEEEEecchhH
Q 005302 653 --LRDPTILILDEA---TSALDAESE-HNIKVATLSN-GLLVKSLHFLSL 695 (703)
Q Consensus 653 --~r~p~ILILDEa---TSaLD~~tE-~~I~~al~~~-~~~~~~~~~~~~ 695 (703)
..+|+++||||| ||+||..+. ..+.+.+.+. ...+-+-|+..+
T Consensus 651 ~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l 700 (765)
T 1ewq_A 651 KEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFEL 700 (765)
T ss_dssp HHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHH
T ss_pred HhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 999999999999 999999876 4788887663 345667787655
No 97
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.64 E-value=1.1e-16 Score=169.85 Aligned_cols=129 Identities=19% Similarity=0.186 Sum_probs=91.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC----hHHh--hcceEEEccCCcccc-ccHHHHhccC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD----IKWL--RGRIGFVGQEPKLFR-MDISSNISYG 599 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~----~~~l--R~~I~~V~Qd~~LF~-gTI~eNI~~g 599 (703)
+|+.++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..| |..+++|+|++.++. .|+.||+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999987654 2334 467999999987765 3677777643
Q ss_pred CCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCC--EEEEeCCCCCCCHHH
Q 005302 600 CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT--ILILDEATSALDAES 672 (703)
Q Consensus 600 ~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~--ILILDEaTSaLD~~t 672 (703)
. ..+.+..+.+.+...+. .+..++..++||.+||||+..+|+ +|.|| |++..|...
T Consensus 181 ~--------------~~~~d~~llDt~G~~~~--~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~ 238 (304)
T 1rj9_A 181 K--------------ARGYDLLFVDTAGRLHT--KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLE 238 (304)
T ss_dssp H--------------HHTCSEEEECCCCCCTT--CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHH
T ss_pred H--------------hCCCCEEEecCCCCCCc--hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHH
Confidence 1 01111111111111111 012357778999999999999999 77788 566655433
No 98
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.64 E-value=2.8e-16 Score=190.43 Aligned_cols=152 Identities=16% Similarity=0.119 Sum_probs=107.2
Q ss_pred CcEEEEE-----EEEEcCCCCCcccceeeeEEecC-------CcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEe
Q 005302 498 GRIDFVD-----VSFRYSSREMVPVLQHVNISVNP-------GEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFP 565 (703)
Q Consensus 498 g~I~~~n-----VsF~Y~~~~~~~vL~~isl~I~~-------Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~d 565 (703)
+.|+++| |++.|+++ ..|++|+||++++ |+.++|+|||||||||++|.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~--~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD--DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------CC--CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecCC--ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4599999 99999532 5799999999988 999999999999999999999 99864
Q ss_pred CCCCChHHhhcceE-EEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHH
Q 005302 566 IKEVDIKWLRGRIG-FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQ 644 (703)
Q Consensus 566 i~~i~~~~lR~~I~-~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQ 644 (703)
+.++| +|||++ ..-|+.|||... . ++.|.+.. |.+.+|+|+++
T Consensus 815 ---------~aqiG~~Vpq~~--~~l~v~d~I~~r----i------------g~~d~~~~---------~~stf~~em~~ 858 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEV--CRLTPIDRVFTR----L------------GASDRIMS---------GESTFFVELSE 858 (1022)
T ss_dssp ---------HHTTTCCEESSE--EEECCCSBEEEE----C------------C------------------CHHHHHHHH
T ss_pred ---------HhheeEEeccCc--CCCCHHHHHHHH----c------------CCHHHHhh---------chhhhHHHHHH
Confidence 34566 999997 366788887421 1 22222211 23457887775
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHH-HHH---HHHHHh--CCcEEEEecchhHHHHhh
Q 005302 645 RIAIARAILRDPTILILDEATSALDAESE-HNI---KVATLS--NGLLVKSLHFLSLYVLIC 700 (703)
Q Consensus 645 RIaLARAL~r~p~ILILDEaTSaLD~~tE-~~I---~~al~~--~~~~~~~~~~~~~~~~~~ 700 (703)
+++|||+..+|+++||||||+++|+... ..+ .+.+.+ -...+=+-|+..+--..|
T Consensus 859 -~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~ 919 (1022)
T 2o8b_B 859 -TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYS 919 (1022)
T ss_dssp -HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTS
T ss_pred -HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999999999998763 333 344433 235677889988765544
No 99
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.62 E-value=6.7e-17 Score=170.06 Aligned_cols=151 Identities=14% Similarity=0.070 Sum_probs=99.4
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-eEEECCEeCCCCChHHhhcceEEEccCCccccccHHH
Q 005302 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG-QILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (703)
Q Consensus 516 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG-~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (703)
++|+++++.+++|+.++|+||||||||||++.|+|...|++| .|.+.+.+ .+...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 579999999999999999999999999999999999999988 77665433 3456666666666555432 2344
Q ss_pred HhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHH-HHHHHHHHHhcCCCCEEEEeCCCC---C---
Q 005302 595 NISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQ-KQRIAIARAILRDPTILILDEATS---A--- 667 (703)
Q Consensus 595 NI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQ-kQRIaLARAL~r~p~ILILDEaTS---a--- 667 (703)
|+..+ ..++++..++++ +.+...+.+.+.. ...+|.+| +||+. |+|+..+|+++|+||||+ +
T Consensus 97 ~l~~~---~~~~~~~~~~~~-----~~l~~~~l~i~~~--~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 97 SLKRE---IIENGKFDQWFD-----ELFGNDTFHLYDS--FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHH---HHHHTHHHHHHH-----HHHSSSCEEEECC--CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred ccccC---CCCHHHHHHHHH-----HHhccCCEEEECC--CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 55543 122333333222 2222222222111 03689999 77777 999999999999999999 4
Q ss_pred CCH-HHHHHHHHHHHhC
Q 005302 668 LDA-ESEHNIKVATLSN 683 (703)
Q Consensus 668 LD~-~tE~~I~~al~~~ 683 (703)
+|. +.-..+.+.|+++
T Consensus 166 ~d~~~~~~~i~~~L~~l 182 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGF 182 (296)
T ss_dssp ---CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 344 4445676666443
No 100
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.62 E-value=6.9e-19 Score=176.01 Aligned_cols=134 Identities=15% Similarity=0.048 Sum_probs=103.0
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCC
Q 005302 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDI 604 (703)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~ 604 (703)
.++|+++||+||||||||||+++|+|+++|+ | ..+++|+||++.++.+..+|+......+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999987 5 36899999999999998888753211011
Q ss_pred CHHHHHHHHHHhchHHHHHcCCCC--cccccCC--CCCChHHHHHHHHH-HHhcCCCCEEEEeCCC-----------CCC
Q 005302 605 KQQDIEWAAKQAYAHDFIMSLPSG--YETLVDD--DLLSGGQKQRIAIA-RAILRDPTILILDEAT-----------SAL 668 (703)
Q Consensus 605 ~~e~i~~aa~~A~l~d~I~~LP~G--ydT~vGe--~~LSGGQkQRIaLA-RAL~r~p~ILILDEaT-----------SaL 668 (703)
..+.+...+.+++..++.| +++++.+ ..+||||+||+++| |+++.++.++++|||. ..+
T Consensus 80 -----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~v 154 (208)
T 3c8u_A 80 -----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRL 154 (208)
T ss_dssp -----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEE
T ss_pred -----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEE
Confidence 1122233444555555555 5666666 37899999999999 9999999999999985 457
Q ss_pred CHHHHHHHHHHHHh
Q 005302 669 DAESEHNIKVATLS 682 (703)
Q Consensus 669 D~~tE~~I~~al~~ 682 (703)
|...|..+...+++
T Consensus 155 d~~~~~~~~R~~~R 168 (208)
T 3c8u_A 155 EVPMADLEARLVQR 168 (208)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHH
Confidence 88888777777765
No 101
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.61 E-value=1e-17 Score=193.77 Aligned_cols=149 Identities=17% Similarity=0.248 Sum_probs=94.9
Q ss_pred cEEEEEEEEEcCCCCCcccceee----------eEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CcceEEECCEeCC
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHV----------NISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-TNGQILIDGFPIK 567 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~i----------sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-~sG~I~idG~di~ 567 (703)
.++++|+++.|++. ..++|+.+ ++++|. +|||||||||||||+++|+|++.| ++|.|.++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 58999999999753 24566655 377776 999999999999999999999989 8999999999963
Q ss_pred C---CChHHhhcceEEEccCCcccc-ccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHH
Q 005302 568 E---VDIKWLRGRIGFVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQK 643 (703)
Q Consensus 568 ~---i~~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQk 643 (703)
. -....+|+.|++|+|++.+++ .|++|||.+.. +. +.... ..+| +
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~-------------~~------~~~~~---------~~~s---~ 134 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ-------------NA------IAGEG---------MGIS---H 134 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH-------------HH------HHCSS---------SCCC---S
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH-------------HH------hcCCc---------cccc---h
Confidence 2 224578999999999998765 57888886531 00 01000 1112 2
Q ss_pred HHHHHHHHhcCCCCEEEEeCC------CCCCCHHHHHHHHHHHHh
Q 005302 644 QRIAIARAILRDPTILILDEA------TSALDAESEHNIKVATLS 682 (703)
Q Consensus 644 QRIaLARAL~r~p~ILILDEa------TSaLD~~tE~~I~~al~~ 682 (703)
+++.++.+...+|+++++||| |++||+..++++.+.+++
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~ 179 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKK 179 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHH
Confidence 445555666678999999999 999999999999988887
No 102
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.60 E-value=8.1e-17 Score=174.10 Aligned_cols=115 Identities=24% Similarity=0.267 Sum_probs=96.2
Q ss_pred cceee-eEEecCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCc----ce-EEECCEeCCCCChHHhhcceEEEccCCccc
Q 005302 517 VLQHV-NISVNPGEVVAIAGLSGSGKSTLVNLLLRLY--EPTN----GQ-ILIDGFPIKEVDIKWLRGRIGFVGQEPKLF 588 (703)
Q Consensus 517 vL~~i-sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly--~p~s----G~-I~idG~di~~i~~~~lR~~I~~V~Qd~~LF 588 (703)
.|+++ ++.|++|+.++|+||||||||||++.+++.+ +|++ |+ |+||+.+.- .++++++++|+..++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 46665 6899999999999999999999999999999 6776 67 999997652 256788999999999
Q ss_pred cccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc-------CCCCEEEE
Q 005302 589 RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL-------RDPTILIL 661 (703)
Q Consensus 589 ~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~-------r~p~ILIL 661 (703)
..++.|||.+... .+ |++|+|++.+||+++ .+|++||+
T Consensus 193 ~~~v~~ni~~~~~--~~---------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIl 237 (349)
T 1pzn_A 193 PDEVLKHIYVARA--FN---------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIV 237 (349)
T ss_dssp HHHHGGGEEEEEC--CS---------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred HHHHhhCEEEEec--CC---------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence 9999999998742 22 356777777777777 68999999
Q ss_pred eCCCCCCCHHH
Q 005302 662 DEATSALDAES 672 (703)
Q Consensus 662 DEaTSaLD~~t 672 (703)
||||+.+|++.
T Consensus 238 Ds~ta~ld~~~ 248 (349)
T 1pzn_A 238 DSLTSHFRSEY 248 (349)
T ss_dssp ETSSTTHHHHC
T ss_pred eCchHhhhhhh
Confidence 99999999863
No 103
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.59 E-value=3.5e-16 Score=172.34 Aligned_cols=165 Identities=19% Similarity=0.228 Sum_probs=106.9
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcE--EEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhc
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEV--VAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRG 576 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~--vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~ 576 (703)
.+++++ +++|++ .+ |+++||+|++|+. +|||||||||||||+|+|+|+. ++|.++........++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 466677 888964 34 9999999999999 9999999999999999999994 5666666554455677
Q ss_pred ceEEEccCCccc-cccHHHHhccCCCCCCCHHHHHH----HHHHhchHHHHHcC-------CCCccccc-------CC--
Q 005302 577 RIGFVGQEPKLF-RMDISSNISYGCTQDIKQQDIEW----AAKQAYAHDFIMSL-------PSGYETLV-------DD-- 635 (703)
Q Consensus 577 ~I~~V~Qd~~LF-~gTI~eNI~~g~~~~~~~e~i~~----aa~~A~l~d~I~~L-------P~GydT~v-------Ge-- 635 (703)
.+++|+|++.++ .-|+.||+.++. ..+.+..+. .++ ....+++... +..-|+.| -+
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~--~~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGD--QINKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC---CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred eEEEEeecCccccccchhhhhhhhh--ccccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 899999999887 579999999985 344332111 111 1233333322 22234331 12
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 005302 636 DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLS 682 (703)
Q Consensus 636 ~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~ 682 (703)
..|+-.+ +.++|+|..+++|+++||+|..|.++.-....+.|++
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 2566665 8999999999999999999999987665555555554
No 104
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.58 E-value=1.5e-17 Score=189.20 Aligned_cols=155 Identities=10% Similarity=0.002 Sum_probs=102.6
Q ss_pred EcCCCCCcccceeeeE-EecCCcEEEEEcCCCCcHHHHHHH--HhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccC
Q 005302 508 RYSSREMVPVLQHVNI-SVNPGEVVAIAGLSGSGKSTLVNL--LLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQE 584 (703)
Q Consensus 508 ~Y~~~~~~~vL~~isl-~I~~Ge~vAIVG~SGsGKSTLlkL--Llgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd 584 (703)
+|+.. .++|+|+|+ .|++||.++|+||||||||||+++ +.|+++|++|.|+++|.+. ..+....++.+|+|+|+
T Consensus 20 ~~~~g--~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~ 96 (525)
T 1tf7_A 20 KMRTM--IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAK 96 (525)
T ss_dssp EECCC--CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHH
T ss_pred cccCC--chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHH
Confidence 45543 579999999 999999999999999999999999 7899999999999999883 22344566789999999
Q ss_pred CccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCC
Q 005302 585 PKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEA 664 (703)
Q Consensus 585 ~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEa 664 (703)
+... +|+.+....+ + ++..++++..++.+.....| ..|||| +|++++||||
T Consensus 97 ~~~~-----~~l~~~~~~~-~-~~~~~~l~~~~l~~~~~~~~---------~~LS~g-------------~~~~lilDe~ 147 (525)
T 1tf7_A 97 LVDE-----GKLFILDASP-D-PEGQEVVGGFDLSALIERIN---------YAIQKY-------------RARRVSIDSV 147 (525)
T ss_dssp HHHT-----TSEEEEECCC-C-SSCCSCCSSHHHHHHHHHHH---------HHHHHH-------------TCSEEEEECS
T ss_pred hhcc-----CcEEEEecCc-c-cchhhhhcccCHHHHHHHHH---------HHHHHc-------------CCCEEEECCH
Confidence 7631 2333321101 0 00001111112211111110 134555 5789999999
Q ss_pred CCC-----CCHHHHHHHHHHHHhCC----cEEEEecchh
Q 005302 665 TSA-----LDAESEHNIKVATLSNG----LLVKSLHFLS 694 (703)
Q Consensus 665 TSa-----LD~~tE~~I~~al~~~~----~~~~~~~~~~ 694 (703)
|+. ||+...+.+.+.++.+. -.+=.-|-+.
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~ 186 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIE 186 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSS
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 985 58888888888876552 2344556554
No 105
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.57 E-value=1.3e-15 Score=180.46 Aligned_cols=59 Identities=24% Similarity=0.285 Sum_probs=50.0
Q ss_pred CCCChHHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchh
Q 005302 636 DLLSGGQKQRIAIARAILRDP--TILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLS 694 (703)
Q Consensus 636 ~~LSGGQkQRIaLARAL~r~p--~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~ 694 (703)
..|||||||||+|||||.++| ++|||||||++||++..+.+.+.|+++. -++=.=|-+.
T Consensus 378 ~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~ 442 (842)
T 2vf7_A 378 PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLD 442 (842)
T ss_dssp GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 489999999999999999999 5999999999999999999988776553 3455556654
No 106
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.57 E-value=2.3e-15 Score=162.99 Aligned_cols=135 Identities=26% Similarity=0.302 Sum_probs=102.9
Q ss_pred EEEEEEcCCCCCcccceeeeE-------EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-cceEEECCEeCCCCChHHh
Q 005302 503 VDVSFRYSSREMVPVLQHVNI-------SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT-NGQILIDGFPIKEVDIKWL 574 (703)
Q Consensus 503 ~nVsF~Y~~~~~~~vL~~isl-------~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~-sG~I~idG~di~~i~~~~l 574 (703)
.+++++|.+. ..+.|+++.+ .+++|+.++|+|||||||||++++|+|+++|+ +|.|...+.++ ++. .
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 5889999764 4678888887 78999999999999999999999999999998 57775544444 332 2
Q ss_pred hcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcC
Q 005302 575 RGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR 654 (703)
Q Consensus 575 R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r 654 (703)
+...+++.|...-. . ..+-.+ +|||||..
T Consensus 167 ~~~~~~v~q~~~~~------------~-~~~~~~--------------------------------------~La~aL~~ 195 (356)
T 3jvv_A 167 ESKKCLVNQREVHR------------D-TLGFSE--------------------------------------ALRSALRE 195 (356)
T ss_dssp CCSSSEEEEEEBTT------------T-BSCHHH--------------------------------------HHHHHTTS
T ss_pred hccccceeeeeecc------------c-cCCHHH--------------------------------------HHHHHhhh
Confidence 34456676654211 0 111111 99999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcEEEEecchhHH
Q 005302 655 DPTILILDEATSALDAESEHNIKVATLSNGLLVKSLHFLSLY 696 (703)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~~~~~~~~~~~ 696 (703)
+|+++++|||| |.++.+.+.++.++-...+-..|-.+..
T Consensus 196 ~PdvillDEp~---d~e~~~~~~~~~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 DPDIILVGEMR---DLETIRLALTAAETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCSEEEESCCC---SHHHHHHHHHHHHTTCEEEEEESCSSHH
T ss_pred CcCEEecCCCC---CHHHHHHHHHHHhcCCEEEEEEccChHH
Confidence 99999999999 8999888888877767788899987754
No 107
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.55 E-value=3.6e-16 Score=177.92 Aligned_cols=138 Identities=15% Similarity=0.067 Sum_probs=95.8
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
++.+++++.|++- ..+|+ ..|++|+.++|+||||||||||++.++|...|+ |+ +.+.
T Consensus 258 ~~~~~l~~g~~~l--d~vL~---g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~ 314 (525)
T 1tf7_A 258 SSNVRVSSGVVRL--DEMCG---GGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAIL 314 (525)
T ss_dssp CCCCEECCSCHHH--HHHTT---SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEE
T ss_pred cccceeecChHHH--HHHhC---CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEE
Confidence 4556666655421 12443 489999999999999999999999999999885 54 1245
Q ss_pred EEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCC
Q 005302 580 FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPT 657 (703)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ 657 (703)
+++|++. .++.+|..-. ..+.+++ .. .|....... ..|||||+||+++||++..+|+
T Consensus 315 ~~~ee~~---~~l~~~~~~~---g~~~~~~------------~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~ 373 (525)
T 1tf7_A 315 FAYEESR---AQLLRNAYSW---GMDFEEM------------ER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPA 373 (525)
T ss_dssp EESSSCH---HHHHHHHHTT---SCCHHHH------------HH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCH---HHHHHHHHHc---CCCHHHH------------Hh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCC
Confidence 6677762 3566665322 1222221 11 122222222 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHH-----HHHHHHHHHHh
Q 005302 658 ILILDEATSALDAE-----SEHNIKVATLS 682 (703)
Q Consensus 658 ILILDEaTSaLD~~-----tE~~I~~al~~ 682 (703)
+||+| ||++||.. ..+.+.+.++.
T Consensus 374 llilD-p~~~Ld~~~~~~~~~~~i~~ll~~ 402 (525)
T 1tf7_A 374 RIAID-SLSALARGVSNNAFRQFVIGVTGY 402 (525)
T ss_dssp EEEEE-CHHHHTSSSCHHHHHHHHHHHHHH
T ss_pred EEEEc-ChHHHHhhCChHHHHHHHHHHHHH
Confidence 99999 99999998 77776665543
No 108
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.55 E-value=1.1e-16 Score=156.60 Aligned_cols=137 Identities=15% Similarity=0.036 Sum_probs=92.1
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCC
Q 005302 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQD 603 (703)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~ 603 (703)
.+++|+.++|+|||||||||++++|+|. |+.|.|.+||.++.+.. .-++.+++++|++. .+.|+.||+.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~~~-- 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADVAG-- 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHHHH--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHHHH--
Confidence 4789999999999999999999999998 78899999998764322 11345788888765 56788888865310
Q ss_pred CCHHHHHHHHHHhchHHHHHcCC--CCccccc--CC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHH
Q 005302 604 IKQQDIEWAAKQAYAHDFIMSLP--SGYETLV--DD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIK 677 (703)
Q Consensus 604 ~~~e~i~~aa~~A~l~d~I~~LP--~GydT~v--Ge--~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~ 677 (703)
. .. ..+-...+.... .+.+..- +. ..+|+||+||+++||++.++|+++ +|++..+.+.
T Consensus 78 -----~--~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 78 -----R--YA-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp -----H--HH-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred -----H--Hh-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 0 00 001000000000 0111000 11 369999999999999999999976 6887777777
Q ss_pred HHHHhC
Q 005302 678 VATLSN 683 (703)
Q Consensus 678 ~al~~~ 683 (703)
+.++.+
T Consensus 142 ~~~~~l 147 (191)
T 1zp6_A 142 SQFADL 147 (191)
T ss_dssp HHTTCC
T ss_pred HHHhcc
Confidence 766554
No 109
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.54 E-value=8.5e-18 Score=180.95 Aligned_cols=177 Identities=15% Similarity=0.116 Sum_probs=119.2
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC----hHHhh
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD----IKWLR 575 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~----~~~lR 575 (703)
|+++|++++|.. ..+++++|+++++|+.++|+|++|||||||++.|+|++.|++|+|.++|.|..... ....|
T Consensus 30 ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 566777788853 46999999999999999999999999999999999999999999999999985432 12357
Q ss_pred cceEEEccCCccccc-------------cHHHHhccC----------CCCC--CCHHHHHHHHHH-------------hc
Q 005302 576 GRIGFVGQEPKLFRM-------------DISSNISYG----------CTQD--IKQQDIEWAAKQ-------------AY 617 (703)
Q Consensus 576 ~~I~~V~Qd~~LF~g-------------TI~eNI~~g----------~~~~--~~~e~i~~aa~~-------------A~ 617 (703)
..+++|+|++.+|.. +++|.+... +... -++..+.+.++. ..
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 789999999999852 123322100 0000 011111110000 00
Q ss_pred hHHHHHcCCCCcc-cccC--C-CCCChHHHHHHHHHHHhcC------CCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 618 AHDFIMSLPSGYE-TLVD--D-DLLSGGQKQRIAIARAILR------DPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 618 l~d~I~~LP~Gyd-T~vG--e-~~LSGGQkQRIaLARAL~r------~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
+.+.+...|.-+- +.+. + ..+|+||+|++..|++++. +|+++. ||++|.+.-..+.+.|.+.
T Consensus 187 i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 187 IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 0001111121000 0111 1 2478999999999999998 689887 9999999988888888764
No 110
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.53 E-value=4.1e-14 Score=152.21 Aligned_cols=57 Identities=28% Similarity=0.352 Sum_probs=48.8
Q ss_pred CCChHHHH------HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc----EEEEecch
Q 005302 637 LLSGGQKQ------RIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL----LVKSLHFL 693 (703)
Q Consensus 637 ~LSGGQkQ------RIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~----~~~~~~~~ 693 (703)
.||||||| |+++||||..+|++|||||||++||+.+.+.+.+.|+++.. .+=.-|-.
T Consensus 248 ~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~ 314 (339)
T 3qkt_A 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 314 (339)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred HCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH
Confidence 69999999 78899999999999999999999999999999999887643 34444643
No 111
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.53 E-value=8.6e-15 Score=166.26 Aligned_cols=59 Identities=14% Similarity=0.246 Sum_probs=50.7
Q ss_pred CC-ChHHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecchhH
Q 005302 637 LL-SGGQKQRIAIARAILRDP--TILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFLSL 695 (703)
Q Consensus 637 ~L-SGGQkQRIaLARAL~r~p--~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~~~ 695 (703)
.| |||||||++|||||+.+| ++|||||||++||+.+...|.+.|+++. -++-.-|-..+
T Consensus 396 ~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~ 460 (517)
T 4ad8_A 396 DVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQI 460 (517)
T ss_dssp SSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 56 999999999999999999 9999999999999999999999987763 34555566543
No 112
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.51 E-value=5.5e-15 Score=164.00 Aligned_cols=48 Identities=29% Similarity=0.389 Sum_probs=45.2
Q ss_pred CCChHHHHHHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 005302 637 LLSGGQKQRIAIARAIL----RDPTILILDEATSALDAESEHNIKVATLSNG 684 (703)
Q Consensus 637 ~LSGGQkQRIaLARAL~----r~p~ILILDEaTSaLD~~tE~~I~~al~~~~ 684 (703)
.||||||||++|||+|. ++|++|+||||||+||+.+...+.+.|++..
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~ 384 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR 384 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHC
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHh
Confidence 39999999999999998 7899999999999999999999999998764
No 113
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.51 E-value=2.2e-15 Score=151.25 Aligned_cols=107 Identities=22% Similarity=0.233 Sum_probs=79.4
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-------CcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHh
Q 005302 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-------TNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNI 596 (703)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-------~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI 596 (703)
-|++||.++|+||||||||||++.|+|++.| ..|.|++++.+. .. ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999997665 455888888653 11 2357788888888888999999
Q ss_pred ccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh-------cCCCCEEEEeCCCCCCC
Q 005302 597 SYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI-------LRDPTILILDEATSALD 669 (703)
Q Consensus 597 ~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL-------~r~p~ILILDEaTSaLD 669 (703)
.+... .+..+ |++++..++++ ..+|+++++||||+.+|
T Consensus 95 ~~~~~--~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 95 YVARA--FNSNH---------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp EEEEC--CSHHH---------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred EEEec--CChHH---------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 88743 22221 11222222222 35899999999999999
Q ss_pred HH
Q 005302 670 AE 671 (703)
Q Consensus 670 ~~ 671 (703)
++
T Consensus 140 ~~ 141 (231)
T 4a74_A 140 SE 141 (231)
T ss_dssp HH
T ss_pred cc
Confidence 84
No 114
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.50 E-value=1.9e-16 Score=168.96 Aligned_cols=137 Identities=19% Similarity=0.154 Sum_probs=98.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC--------CCCcceEEECCEeCCCCC---------------hHHhhcceEEE---c
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLY--------EPTNGQILIDGFPIKEVD---------------IKWLRGRIGFV---G 582 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly--------~p~sG~I~idG~di~~i~---------------~~~lR~~I~~V---~ 582 (703)
+.++|+|+||||||||+|.|+|++ .|+.|+|.|||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999998 889999999999998764 35678889988 6
Q ss_pred cCCc-cccccHHHHhccCCCCCCCHHHHHHHH-HHhchHHHHHcCCCCcccccCC-------CCCChHHHHHHHHHHHhc
Q 005302 583 QEPK-LFRMDISSNISYGCTQDIKQQDIEWAA-KQAYAHDFIMSLPSGYETLVDD-------DLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 583 Qd~~-LF~gTI~eNI~~g~~~~~~~e~i~~aa-~~A~l~d~I~~LP~GydT~vGe-------~~LSGGQkQRIaLARAL~ 653 (703)
|++. .|+.++.||+.+++| +.+.+.. ......+. ..+ ++.-|.++- .++||||+||...+|+++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p-----~~~~~~~~~~~~~~~~-~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill 157 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP-----GPIIQTFFSHEVLCQR-YLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRILL 157 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH-----HHHHHHHHHSHHHHHH-EEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCH-----HHHHHHHhcCccccCe-EEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEE
Confidence 8876 479999999999854 2222111 00000000 000 112233331 168999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 654 RDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
.+|+++ ||| +++.+.++++
T Consensus 158 ~k~dl~--de~---------~~l~~~l~~l 176 (318)
T 1nij_A 158 TKTDVA--GEA---------EKLHERLARI 176 (318)
T ss_dssp ECTTTC--SCT---------HHHHHHHHHH
T ss_pred ECcccC--CHH---------HHHHHHHHHh
Confidence 999987 888 4555555544
No 115
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.47 E-value=4.8e-13 Score=160.47 Aligned_cols=141 Identities=17% Similarity=0.182 Sum_probs=95.0
Q ss_pred CcEEEEEEEEEcCCC--CCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHH--------hcCCCCCcceEEECCEeCC
Q 005302 498 GRIDFVDVSFRYSSR--EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLL--------LRLYEPTNGQILIDGFPIK 567 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~--~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLL--------lgly~p~sG~I~idG~di~ 567 (703)
+.|++++...-+-.. ....|++|+||++++|+.++|+|||||||||++|.+ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 458888875544321 135799999999999999999999999999999999 77776665432
Q ss_pred CCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005302 568 EVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (703)
Q Consensus 568 ~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (703)
++.+. .+|. .+| +.|.+ ...+|+|++|+..
T Consensus 702 ----------~~~~d---~i~~-------~ig------------------~~d~l------------~~~lStf~~e~~~ 731 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVG------------------AGDSQ------------LKGVSTFMAEMLE 731 (934)
T ss_dssp ----------EECCS---EEEE-------ECC---------------------------------------CHHHHHHHH
T ss_pred ----------chHHH---HHHH-------hcC------------------chhhH------------HHhHhhhHHHHHH
Confidence 11110 0110 011 00100 1358888888888
Q ss_pred HHHHh--cCCCCEEEEeCCCCCCCHHHHHHH----HHHHHh--CCcEEEEecchhHH
Q 005302 648 IARAI--LRDPTILILDEATSALDAESEHNI----KVATLS--NGLLVKSLHFLSLY 696 (703)
Q Consensus 648 LARAL--~r~p~ILILDEaTSaLD~~tE~~I----~~al~~--~~~~~~~~~~~~~~ 696 (703)
+|+++ ..+|+++||||||+++|+.....+ .+.+.+ -...+=+-|+..+-
T Consensus 732 ~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~ 788 (934)
T 3thx_A 732 TASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT 788 (934)
T ss_dssp HHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG
T ss_pred HHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH
Confidence 88888 999999999999999999877666 333433 23456677886553
No 116
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.46 E-value=1.1e-16 Score=176.66 Aligned_cols=130 Identities=19% Similarity=0.183 Sum_probs=89.2
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC----ChHHhhcceEEEc---------
Q 005302 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV----DIKWLRGRIGFVG--------- 582 (703)
Q Consensus 516 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i----~~~~lR~~I~~V~--------- 582 (703)
.+|+++ + .++|+.++|+|||||||||+++.|+|+++|++|+|.++|.|+... +...+++.+++++
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lr 234 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILR 234 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGG
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhc
Confidence 366766 4 389999999999999999999999999999999999999888421 1123445566654
Q ss_pred cCCccc--c-----ccHHHHhccCCCC--------CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005302 583 QEPKLF--R-----MDISSNISYGCTQ--------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (703)
Q Consensus 583 Qd~~LF--~-----gTI~eNI~~g~~~--------~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (703)
|+|.++ . .|+.+|+.++... ..+..+..+.+...++.++. -..+|||||+||
T Consensus 235 q~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-----------~~~~LSgg~~QR-- 301 (418)
T 1p9r_A 235 QDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-----------ISSSLLGVLAQR-- 301 (418)
T ss_dssp GCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-----------HHHHEEEEEEEE--
T ss_pred cCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-----------HHHHHHHHHHHH--
Confidence 887663 2 3777887653110 11122333333333332221 114799999999
Q ss_pred HHHHhcCCCCEEE
Q 005302 648 IARAILRDPTILI 660 (703)
Q Consensus 648 LARAL~r~p~ILI 660 (703)
|||||..+|++..
T Consensus 302 LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEECTTTCEEE
T ss_pred hhhhhcCCCCccC
Confidence 9999999999875
No 117
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.45 E-value=3.3e-15 Score=143.59 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=73.5
Q ss_pred EEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEc
Q 005302 503 VDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVG 582 (703)
Q Consensus 503 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~ 582 (703)
+|++++|++ ..+++++||+|++||+++|+||||||||||+|+|+|++ |++|+|.++|.++.+. ...+ . +|+
T Consensus 11 ~~~~~~~g~---~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~-~--~~~ 81 (158)
T 1htw_A 11 EFSMLRFGK---KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA-G--KMI 81 (158)
T ss_dssp HHHHHHHHH---HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET-T--EEE
T ss_pred HHHHHHHHH---HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC-C--cce
Confidence 466777752 46999999999999999999999999999999999999 9999999999888521 1112 2 799
Q ss_pred cCCccccccHHHHhcc
Q 005302 583 QEPKLFRMDISSNISY 598 (703)
Q Consensus 583 Qd~~LF~gTI~eNI~~ 598 (703)
|++.+|.-|+.||+.+
T Consensus 82 q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 82 YHFDLYRLADPEELEF 97 (158)
T ss_dssp EEEECTTCSCTTHHHH
T ss_pred eccccccCCcHHHHHH
Confidence 9999998899999954
No 118
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.44 E-value=3.6e-15 Score=161.09 Aligned_cols=121 Identities=21% Similarity=0.170 Sum_probs=80.6
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-CCcceEEEC-CEeCCCCChHHhhcceEEEccCCccccc-cH
Q 005302 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-PTNGQILID-GFPIKEVDIKWLRGRIGFVGQEPKLFRM-DI 592 (703)
Q Consensus 516 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-p~sG~I~id-G~di~~i~~~~lR~~I~~V~Qd~~LF~g-TI 592 (703)
.-++++++. .+|++++|+||||||||||+|.|+|+.. |++|+|.++ |.+.. ...+..+++|+|++.+++. |+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 457888874 5899999999999999999999999999 999999997 77653 2356789999999988865 78
Q ss_pred HHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhc
Q 005302 593 SSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 593 ~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~ 653 (703)
+|+-. . +.+.+++.+ .+.|+...+ |..-..+. .++| ||+||++||+++.
T Consensus 279 ~e~~l---~-~l~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 279 REFGL---W-HLEPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HTCCC---C-CCCHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHhhh---c-CCCHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 98632 2 345555432 223333332 22222222 4799 9999999999873
No 119
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.44 E-value=1.7e-15 Score=155.10 Aligned_cols=135 Identities=14% Similarity=0.083 Sum_probs=94.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHh---cCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCcccc-ccHHHHhccC---
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLL---RLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFR-MDISSNISYG--- 599 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLl---gly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g--- 599 (703)
+++.++|+|||||||||++++|+ |+..|++|+|.++|.+.. ..+...++.++|++.++. .|+.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999999887642 234555677778777655 5788888531
Q ss_pred --------CCCCCCHHHHHHHHHHhchHHHHHcCCCCcc-------------ccc-CC--CCCChHHHHHHHHHHHh-cC
Q 005302 600 --------CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYE-------------TLV-DD--DLLSGGQKQRIAIARAI-LR 654 (703)
Q Consensus 600 --------~~~~~~~e~i~~aa~~A~l~d~I~~LP~Gyd-------------T~v-Ge--~~LSGGQkQRIaLARAL-~r 654 (703)
+.-..+.++.... ..+. +.+ ..+ .. ..||| |+ ||+ +.
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l----------~~~~-~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~ 163 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEAL----------DKIC-EVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFN 163 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHH----------HTTC-CCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTS
T ss_pred cCCCeEEEECCCCCHHHHHHH----------Hhhc-CCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccC
Confidence 0001122222111 1111 111 011 11 36898 66 899 99
Q ss_pred CCCEEEEe----CCCCCCCHHHHHHHHHHHHhC
Q 005302 655 DPTILILD----EATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 655 ~p~ILILD----EaTSaLD~~tE~~I~~al~~~ 683 (703)
+|++++|| |||++||.+++..+.+.+++.
T Consensus 164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHH
T ss_pred CCcccccccccccccccCCCCcHHHHHHHHHHH
Confidence 99999999 999999999998888877653
No 120
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.42 E-value=1.7e-13 Score=142.96 Aligned_cols=133 Identities=14% Similarity=0.179 Sum_probs=89.2
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhc-cCCCC
Q 005302 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNIS-YGCTQ 602 (703)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~-~g~~~ 602 (703)
.+++|+.++|+||+|||||||++.+++... .|++. .|.+..+ +..+.|+..+... ..+.+++. ++ .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g-~- 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALG-A- 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHH-T-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHH-h-
Confidence 388999999999999999999999999664 57763 4554321 3467888777643 23333332 33 1
Q ss_pred CCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCC--CCCHHHH---HH
Q 005302 603 DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATS--ALDAESE---HN 675 (703)
Q Consensus 603 ~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ILILDEaTS--aLD~~tE---~~ 675 (703)
+.+.++..++.+...+. ...+. ..||+||+|++ |+++++|+++|+||||+ ++|..+. .+
T Consensus 93 ~~~~~~~~~~~~~l~l~-----------~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 93 HLSAEERQAVADGLLIQ-----------PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp TSCHHHHHHHHHHEEEC-----------CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred hcChhhhhhccCceEEe-----------ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 33444444444433321 11222 47999998875 78999999999999999 9997544 55
Q ss_pred HHHHHHhC
Q 005302 676 IKVATLSN 683 (703)
Q Consensus 676 I~~al~~~ 683 (703)
+.+.|+++
T Consensus 159 ~~~~L~~l 166 (279)
T 1nlf_A 159 VIGRMEAI 166 (279)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555443
No 121
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.40 E-value=9.4e-15 Score=148.50 Aligned_cols=165 Identities=12% Similarity=0.071 Sum_probs=96.6
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh--cCCCCCcceEEECCEeCCCCChHHhhcc
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL--RLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLl--gly~p~sG~I~idG~di~~i~~~~lR~~ 577 (703)
++++++++.|++- ..++.+ .|++||.++|+||||||||||++.|+ |+.++.+|.+.+++.+..+ .....++.
T Consensus 7 ~~~~~i~tg~~~l--D~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (251)
T 2ehv_A 7 QPVRRVKSGIPGF--DELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMAS 80 (251)
T ss_dssp -CCCEECCSCTTT--GGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHT
T ss_pred cccceeecCCHhH--HHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHH
Confidence 5667777777642 234443 69999999999999999999999999 7767788888888754321 22334566
Q ss_pred eEEEccCCcccc-ccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCC
Q 005302 578 IGFVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (703)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p 656 (703)
+++++|+...+. -++.|+..... ....+ . .+ . .....+-++.++-..+..-..+|
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~---------~--~~---------~--~~~~~~~~~~~~~~~~~l~~~~p 136 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVV--GLPSE---------E--KF---------V--LEDRFNVDNFLRYIYRVVKAINA 136 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC-------------------------------------------CCHHHHHHHHHHHHHHTTC
T ss_pred cCCChHHHhhcCCEEEEEcccccc--ccccc---------c--ce---------e--ccCcccHHHHHHHHHHHHHhhCC
Confidence 888888754321 12222222110 00000 0 00 0 00122344555444444445799
Q ss_pred CEEEEeCCCCCCC-----HHHHHHHHHHHHhC---C-cEEEEecchh
Q 005302 657 TILILDEATSALD-----AESEHNIKVATLSN---G-LLVKSLHFLS 694 (703)
Q Consensus 657 ~ILILDEaTSaLD-----~~tE~~I~~al~~~---~-~~~~~~~~~~ 694 (703)
++++|||||+.+| ....+.+.+.++.+ + -.+=+-|-+.
T Consensus 137 ~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~ 183 (251)
T 2ehv_A 137 KRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD 183 (251)
T ss_dssp SEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-
T ss_pred CEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 9999999999997 55555566555433 2 3455567643
No 122
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.39 E-value=1.2e-13 Score=165.21 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=93.2
Q ss_pred CcEEEEEEEEEcC----CCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-CCcceEEECCEeCCCCChH
Q 005302 498 GRIDFVDVSFRYS----SREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-PTNGQILIDGFPIKEVDIK 572 (703)
Q Consensus 498 g~I~~~nVsF~Y~----~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-p~sG~I~idG~di~~i~~~ 572 (703)
+.|++++...-.= ...+..|++|+||++++|+.++|+|||||||||++|.+.++.- ++.|
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g--------------- 703 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG--------------- 703 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT---------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC---------------
Confidence 3577777543220 1113679999999999999999999999999999999875321 1111
Q ss_pred HhhcceEEEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 573 WLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
++|+++..-+ ++.++|. . . .++.|.+.. |.+.+|+|++|+..|+|+
T Consensus 704 ------~~vpa~~~~i--~~~d~i~-~---~------------ig~~d~l~~---------~~stfs~em~~~~~il~~- 749 (918)
T 3thx_B 704 ------SYVPAEEATI--GIVDGIF-T---R------------MGAADNIYK---------GRSTFMEELTDTAEIIRK- 749 (918)
T ss_dssp ------CCBSSSEEEE--ECCSEEE-E---E------------C-------------------CCHHHHHHHHHHHHHH-
T ss_pred ------ccccchhhhh--hHHHHHH-H---h------------CChHHHHHH---------hHHHhhHHHHHHHHHHHh-
Confidence 1222221100 0001110 0 0 011111111 125789999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHH-HHHHh-----CCcEEEEecchhH
Q 005302 653 LRDPTILILDEATSALDAESEHNIK-VATLS-----NGLLVKSLHFLSL 695 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~~tE~~I~-~al~~-----~~~~~~~~~~~~~ 695 (703)
..+|+++||||||++||+.....+. +.++. -...+=+-|+..+
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el 798 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPV 798 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHH
Confidence 8999999999999999998877765 33332 2346667788665
No 123
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.38 E-value=1.8e-14 Score=160.80 Aligned_cols=129 Identities=17% Similarity=0.241 Sum_probs=94.1
Q ss_pred eeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC----hHH--hhcceEEEccCCccc-ccc
Q 005302 519 QHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD----IKW--LRGRIGFVGQEPKLF-RMD 591 (703)
Q Consensus 519 ~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~----~~~--lR~~I~~V~Qd~~LF-~gT 591 (703)
+++||++++|++++|||+||||||||++.|+|++.|++|+|.++|.|..... +.. .|+.|++|+|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 6789999999999999999999999999999999999999999988875432 223 377899999998754 568
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCccccc----CC----CCCChHHHHHHHHHHHhcC-CCC-EEEE
Q 005302 592 ISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLV----DD----DLLSGGQKQRIAIARAILR-DPT-ILIL 661 (703)
Q Consensus 592 I~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~v----Ge----~~LSGGQkQRIaLARAL~r-~p~-ILIL 661 (703)
++|||.++.. .|+|..+ |- .++-.--+||+.++|++.. .|. +|+.
T Consensus 364 V~e~l~~a~~-------------------------~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 364 IFDAIQAAKA-------------------------RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHH-------------------------TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHh-------------------------cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 8999987621 1222222 11 1122233689999998864 463 5555
Q ss_pred eCCCCCCCHHH
Q 005302 662 DEATSALDAES 672 (703)
Q Consensus 662 DEaTSaLD~~t 672 (703)
.+||++.|...
T Consensus 419 LDattGq~al~ 429 (503)
T 2yhs_A 419 IDASTGQNAVS 429 (503)
T ss_dssp EEGGGTHHHHH
T ss_pred ecCcccHHHHH
Confidence 55888766543
No 124
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.38 E-value=5e-14 Score=142.47 Aligned_cols=111 Identities=17% Similarity=0.148 Sum_probs=82.6
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CcceEEECCEeCCCCChHHhhcceEEEccCCccccccH-----HH
Q 005302 522 NISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP--TNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDI-----SS 594 (703)
Q Consensus 522 sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p--~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI-----~e 594 (703)
.-..++|+.++|+||||||||||+|+|+|+++| .+|.|.++|.+.+. ..++.++|++|++.+|...+ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 346899999999999999999999999999986 78999999987653 24678999999999987644 47
Q ss_pred HhccCCC-CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHH
Q 005302 595 NISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESE 673 (703)
Q Consensus 595 NI~~g~~-~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE 673 (703)
|+.++.. ...+.+++. +++.+++++||| ||+++.
T Consensus 86 ~~~~~~~~yg~~~~~v~----------------------------------------~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 86 HAEVFGNYYGTSREAIE----------------------------------------QVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp EEEETTEEEEEEHHHHH----------------------------------------HHHTTTCEEEEE-----CCHHHH
T ss_pred HHHHHhccCCCCHHHHH----------------------------------------HHHhcCCeEEEE-----ECHHHH
Confidence 7766421 001222222 233346999999 999999
Q ss_pred HHHHHHHH
Q 005302 674 HNIKVATL 681 (703)
Q Consensus 674 ~~I~~al~ 681 (703)
+++.+.+.
T Consensus 121 ~~i~~~l~ 128 (219)
T 1s96_A 121 QQIRQKMP 128 (219)
T ss_dssp HHHHHHCT
T ss_pred HHHHHHcc
Confidence 99999876
No 125
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.36 E-value=1.2e-13 Score=165.13 Aligned_cols=132 Identities=21% Similarity=0.197 Sum_probs=89.3
Q ss_pred HHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCC-----CC-CHHHHHHHHHH
Q 005302 542 STLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQ-----DI-KQQDIEWAAKQ 615 (703)
Q Consensus 542 STLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-----~~-~~e~i~~aa~~ 615 (703)
+|+-.+.-+.+.|++|+|.+||+++.++.. .|+.||+.+...- +. -.+++.+..+
T Consensus 382 ~~C~~C~g~rl~~~~~~V~i~G~~i~~~~~------------------~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~- 442 (916)
T 3pih_A 382 RTCSVCGGRRLNREALSVKINGLNIHEFTE------------------LSISEELEFLKNLNLTEREREIVGELLKEIE- 442 (916)
T ss_dssp EECTTTCSCCBCTTGGGEEETTEEHHHHHH------------------SBHHHHHHHHHSCCCCTTTTTTHHHHHHHHH-
T ss_pred ccchhcccccCChHhcCcEECCccHHHhhh------------------CCHHHHHHHHHhccCcHHHHHHHHhhHHHHH-
Confidence 455566677899999999999999865332 3445555433110 10 1111211111
Q ss_pred hchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHhCCc----EE
Q 005302 616 AYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPT--ILILDEATSALDAESEHNIKVATLSNGL----LV 687 (703)
Q Consensus 616 A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~--ILILDEaTSaLD~~tE~~I~~al~~~~~----~~ 687 (703)
...+++..+-.+|.+ .+. .+||||||||++|||||.++|+ +|||||||++||+...+.+.+.|+++.+ ++
T Consensus 443 -~~~~~L~~vgL~~l~-l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tvi 520 (916)
T 3pih_A 443 -KRLEFLVDVGLEYLT-LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVI 520 (916)
T ss_dssp -HHHHHHHTTTCTTCB-TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEE
T ss_pred -HHHHHHHHcCCcccc-ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 123455555433332 233 4899999999999999999887 9999999999999999999999998864 55
Q ss_pred EEecchh
Q 005302 688 KSLHFLS 694 (703)
Q Consensus 688 ~~~~~~~ 694 (703)
-.-|-+.
T Consensus 521 vVtHd~~ 527 (916)
T 3pih_A 521 VVEHDEE 527 (916)
T ss_dssp EECCCHH
T ss_pred EEeCCHH
Confidence 5567654
No 126
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.34 E-value=1e-13 Score=138.77 Aligned_cols=137 Identities=9% Similarity=0.005 Sum_probs=93.9
Q ss_pred cccceeeeE-EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhc---ceEEEccCCccccc
Q 005302 515 VPVLQHVNI-SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRG---RIGFVGQEPKLFRM 590 (703)
Q Consensus 515 ~~vL~~isl-~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~---~I~~V~Qd~~LF~g 590 (703)
-+.|+++.. .+++|+.++|+||||||||||++.+++...+++|.|.+.+.+.. .+.+++ .+++.+|+..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~---- 81 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES---RDSIIRQAKQFNWDFEEYI---- 81 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC---HHHHHHHHHHTTCCCGGGB----
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC---HHHHHHHHHHhcchHHHHh----
Confidence 457899988 89999999999999999999999999999888899988765542 333322 3344333321
Q ss_pred cHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCC--EEEEeCCCCCC
Q 005302 591 DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT--ILILDEATSAL 668 (703)
Q Consensus 591 TI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~--ILILDEaTSaL 668 (703)
.+++...+ .... . .. + .| + ....|.+|.++.+.+.+...+|+ ++|+||||+.+
T Consensus 82 --~~~~~~~~--~~~~-~-------------~~--~-~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 82 --EKKLIIID--ALMK-E-------------KE--D-QW---S-LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp --TTTEEEEE--CCC--------------------C-TT---B-CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred --hCCEEEEe--cccc-c-------------cC--c-ee---e-ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 11222221 1100 0 00 0 00 1 12349999999888888778999 99999999888
Q ss_pred --CHHHHHHHHHHHHhC
Q 005302 669 --DAESEHNIKVATLSN 683 (703)
Q Consensus 669 --D~~tE~~I~~al~~~ 683 (703)
|+...+++.+.|+++
T Consensus 137 ~~d~~~~~~~~~~l~~~ 153 (235)
T 2w0m_A 137 LDKPAMARKISYYLKRV 153 (235)
T ss_dssp SSCGGGHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 987777777776543
No 127
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.33 E-value=5.7e-13 Score=132.69 Aligned_cols=113 Identities=16% Similarity=0.130 Sum_probs=71.8
Q ss_pred cccceeeeE-EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHH
Q 005302 515 VPVLQHVNI-SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDIS 593 (703)
Q Consensus 515 ~~vL~~isl-~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~ 593 (703)
-+.|+++.. -+++|+.++|+||||||||||++.+++ .+..+.+++++.+ ..+.+.+++
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~----------------- 64 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQ----------------- 64 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHH-----------------
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHH-----------------
Confidence 346777765 699999999999999999999999999 4444455544422 112222221
Q ss_pred HHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChH--HHHHHHHHHHhcCC-CCEEEEeCCCCCCCH
Q 005302 594 SNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGG--QKQRIAIARAILRD-PTILILDEATSALDA 670 (703)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGG--QkQRIaLARAL~r~-p~ILILDEaTSaLD~ 670 (703)
..... ..+.+++ ...+ .+ ...|++ |+|+++.||++.++ |+++|+||||+.+|.
T Consensus 65 -~~~~~---~~~~~~~------------~~~~------~~--~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 65 -MAETR---GLNPEEA------------LSRF------IL--FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp -HHHTT---TCCHHHH------------HHHE------EE--ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred -HHHhc---CCChHHH------------hhcE------EE--EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 11110 1112211 1111 01 123444 47899999999986 999999999999997
Q ss_pred HH
Q 005302 671 ES 672 (703)
Q Consensus 671 ~t 672 (703)
..
T Consensus 121 ~~ 122 (220)
T 2cvh_A 121 EE 122 (220)
T ss_dssp GG
T ss_pred cC
Confidence 54
No 128
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.32 E-value=4.5e-15 Score=155.09 Aligned_cols=144 Identities=15% Similarity=0.133 Sum_probs=107.2
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCC-cccc-ccH
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEP-KLFR-MDI 592 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~-~LF~-gTI 592 (703)
+.+++++++++++| ++|+||+|||||||++.|+|.+.+ |.|.++|.++.+......++.+++++|+. ..+. -++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 46899999999999 999999999999999999999987 79999999987766667778899999986 3332 356
Q ss_pred HHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCC----
Q 005302 593 SSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATS---- 666 (703)
Q Consensus 593 ~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ILILDEaTS---- 666 (703)
.|||-.... .-+.++. + . ....+.. ..|||||+||..+|+|+..+|++| |||+.
T Consensus 109 ~Deid~~~~-~r~~~~~-------~------~----~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gR 168 (274)
T 2x8a_A 109 FDEVDALCP-RRSDRET-------G------A----SVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGR 168 (274)
T ss_dssp EETCTTTCC---------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTS
T ss_pred eehhhhhhc-ccCCCcc-------h------H----HHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCccc
Confidence 788765432 1111100 0 0 0011111 359999999999999999999985 99964
Q ss_pred --------CCCHHHHHHHHHHHHh
Q 005302 667 --------ALDAESEHNIKVATLS 682 (703)
Q Consensus 667 --------aLD~~tE~~I~~al~~ 682 (703)
.-|.+....|.+.+.+
T Consensus 169 fd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 169 LDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp SCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CCeEEEeCCcCHHHHHHHHHHHHh
Confidence 3477888888887654
No 129
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.31 E-value=1.7e-13 Score=145.20 Aligned_cols=116 Identities=17% Similarity=0.159 Sum_probs=81.2
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEE---CCEeCCCCChHHhh-cceEEEccCCccc------cccH
Q 005302 523 ISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILI---DGFPIKEVDIKWLR-GRIGFVGQEPKLF------RMDI 592 (703)
Q Consensus 523 l~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~i---dG~di~~i~~~~lR-~~I~~V~Qd~~LF------~gTI 592 (703)
+++.+|++++++||||||||||+|.|+ +..|++|+|.+ +|.++.... ..++ +.+|+|+|+|-+. .-|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~-~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV-RLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE-EEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE-EEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 466789999999999999999999999 99999999999 999887643 2233 4799999999653 4678
Q ss_pred HHHh--ccC---------C---CCCCCHHHHHHHHHHhchHH-HHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005302 593 SSNI--SYG---------C---TQDIKQQDIEWAAKQAYAHD-FIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (703)
Q Consensus 593 ~eNI--~~g---------~---~~~~~~e~i~~aa~~A~l~d-~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (703)
||+ .|. . +.+...+.+.++++..++.+ ...+.| ..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~---------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL---------KIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH---------HHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH---------HHHHHHHHHHHHHhc
Confidence 898 443 1 11223466788888877764 322211 358998888899987
No 130
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.28 E-value=2.7e-12 Score=121.88 Aligned_cols=66 Identities=24% Similarity=0.307 Sum_probs=55.0
Q ss_pred Cccccc----CC---CCCChHHHHHHHHH------HHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEe
Q 005302 628 GYETLV----DD---DLLSGGQKQRIAIA------RAILRDPTILILDEATSALDAESEHNIKVATLSNG----LLVKSL 690 (703)
Q Consensus 628 GydT~v----Ge---~~LSGGQkQRIaLA------RAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~ 690 (703)
+|++.+ .+ .+||||||||++|| |||+++|++|||||||++||+++.+.+.+.|+++. .++-.-
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 677765 12 38999999999876 99999999999999999999999999999998874 245555
Q ss_pred cch
Q 005302 691 HFL 693 (703)
Q Consensus 691 ~~~ 693 (703)
|-.
T Consensus 121 H~~ 123 (148)
T 1f2t_B 121 HDE 123 (148)
T ss_dssp SCG
T ss_pred ChH
Confidence 654
No 131
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.26 E-value=1.6e-13 Score=155.22 Aligned_cols=150 Identities=13% Similarity=0.100 Sum_probs=102.6
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccc--cH
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRM--DI 592 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~g--TI 592 (703)
+.+++++++.+++|+.++|+|||||||||+++.|+|+++|++|.|.++|.+--.++ -+++++++.|+.. ..+ |.
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~---~~~~v~~~~r~~~-~~~~~~~ 322 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY---HENWIAEVTRTGM-GEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC---CSSEEEEECBCCS-SSCCBCH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC---CCCeEEEEeeccc-ccCCcCH
Confidence 45789999999999999999999999999999999999999999999997632222 1456888888766 443 67
Q ss_pred HHHhccC---CC-----CCCCHHHHHHHHHHhc-------------hHHHH---HcCCCCcccccCC---------CCCC
Q 005302 593 SSNISYG---CT-----QDIKQQDIEWAAKQAY-------------AHDFI---MSLPSGYETLVDD---------DLLS 639 (703)
Q Consensus 593 ~eNI~~g---~~-----~~~~~e~i~~aa~~A~-------------l~d~I---~~LP~GydT~vGe---------~~LS 639 (703)
++++... +| .+..+++...+.+.+. +.+.+ ..+|+|....+.+ ..+|
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 7776422 11 1345555655555543 12333 2334554433221 2579
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 005302 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVAT 680 (703)
Q Consensus 640 GGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al 680 (703)
||||||.++|.+ | |++||+++.+.+.+.+
T Consensus 403 ~G~~~R~~~ai~-----------E-~~GlDp~~~~~~~~~l 431 (511)
T 2oap_1 403 GNTRLRRTKEVN-----------E-ILGIDPVDKNLLVNQF 431 (511)
T ss_dssp SSCEEEEEEEEE-----------E-EEECCSSSSCCEEEEE
T ss_pred CCCceEEEEEEE-----------E-EcCcccCCCeEEEEEe
Confidence 999999887521 6 8888887665544444
No 132
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.25 E-value=6.7e-14 Score=140.59 Aligned_cols=127 Identities=21% Similarity=0.218 Sum_probs=103.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC---CCCcceEEE--------CCEeCC-CCChHHhhcceEEEccCC------ccc
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLY---EPTNGQILI--------DGFPIK-EVDIKWLRGRIGFVGQEP------KLF 588 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly---~p~sG~I~i--------dG~di~-~i~~~~lR~~I~~V~Qd~------~LF 588 (703)
.+.+++|+|+|||||||++++|.+.| .++.|+|.. +|.++. +....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999877 889999998 788876 356678899999999986 556
Q ss_pred cccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC---CCCChHHHHHHHHHHHhcCCCCEEEEeCCC
Q 005302 589 RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD---DLLSGGQKQRIAIARAILRDPTILILDEAT 665 (703)
Q Consensus 589 ~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe---~~LSGGQkQRIaLARAL~r~p~ILILDEaT 665 (703)
..++.+|+. ++++.+++..++.|+++.....+.++.+.. --++|+ .++++++++++++|+++++
T Consensus 84 ~~~v~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 84 GEDVSGEIR--------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp TEECHHHHT--------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred CeeCchhhC--------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 667777653 478889999999999998877777666532 257776 5677889999999999986
Q ss_pred C
Q 005302 666 S 666 (703)
Q Consensus 666 S 666 (703)
.
T Consensus 151 ~ 151 (227)
T 1cke_A 151 S 151 (227)
T ss_dssp H
T ss_pred H
Confidence 4
No 133
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.25 E-value=5.1e-12 Score=135.24 Aligned_cols=127 Identities=15% Similarity=0.080 Sum_probs=87.1
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChH----Hhhcc--eEEEccCCcccc-ccHHHHh
Q 005302 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK----WLRGR--IGFVGQEPKLFR-MDISSNI 596 (703)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~----~lR~~--I~~V~Qd~~LF~-gTI~eNI 596 (703)
..++|+.++|||||||||||+++.|+|++.|++|+|.++|.|+...+.. .|+++ +.+++|+..++. .|++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999876632 34444 559999988765 5788888
Q ss_pred ccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCC-CCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHH
Q 005302 597 SYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD-LLSGGQKQRIAIARAILRDPTILILDEATSALDAES 672 (703)
Q Consensus 597 ~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~-~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~t 672 (703)
.++...+. |.+ =.||. |-. .-..=.++--.++|++..++++++||..|. .|...
T Consensus 205 ~~~~~~~~---------------d~v-----liDta-G~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~ 259 (328)
T 3e70_C 205 QHAKARGI---------------DVV-----LIDTA-GRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVE 259 (328)
T ss_dssp HHHHHHTC---------------SEE-----EEEEC-CSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHH
T ss_pred HHHHhccc---------------hhh-----HHhhc-cchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHH
Confidence 75411000 000 01221 110 001112233348999999999999996665 44433
No 134
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.25 E-value=2.4e-12 Score=138.00 Aligned_cols=125 Identities=17% Similarity=0.136 Sum_probs=68.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc-CCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccc-cccHHHHhccCCCCCCCH
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLR-LYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLF-RMDISSNISYGCTQDIKQ 606 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlg-ly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF-~gTI~eNI~~g~~~~~~~ 606 (703)
..+.|+||+|+||||+++.++| ++.|++|+|.++|.+...... -+..+++++|++++. +.+- .+ ..+.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~---~~~~ 106 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MG---NNDR 106 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC------------CCH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cC---Ccch
Confidence 3499999999999999999999 899999999999988765332 377899999988752 1110 01 1122
Q ss_pred HHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCc
Q 005302 607 QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGL 685 (703)
Q Consensus 607 e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~ 685 (703)
+.+++..+.+. ... +++..+ .||| +..+|+++|+|||++ ||.++.+.+.+.+++.+.
T Consensus 107 ~~~~~~i~~~~-----~~~--~~~~~~---~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~ 163 (354)
T 1sxj_E 107 IVIQELLKEVA-----QME--QVDFQD---SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSK 163 (354)
T ss_dssp HHHHHHHHHHT-----TTT--C--------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH-----Hhc--cccccc---cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcC
Confidence 22333322211 111 111111 5677 788999999999999 999999999999987653
No 135
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.23 E-value=7.3e-14 Score=148.28 Aligned_cols=139 Identities=20% Similarity=0.250 Sum_probs=95.3
Q ss_pred CCCcEEEEEEEEEcCCCCCcccceeeeEEe-------------------cCCcEEEEEcCCCCcHHHHHHHHhcCCC--C
Q 005302 496 LMGRIDFVDVSFRYSSREMVPVLQHVNISV-------------------NPGEVVAIAGLSGSGKSTLVNLLLRLYE--P 554 (703)
Q Consensus 496 ~~g~I~~~nVsF~Y~~~~~~~vL~~isl~I-------------------~~Ge~vAIVG~SGsGKSTLlkLLlgly~--p 554 (703)
..+.|+++||++.|. ++++++|+++ ++|+++||+||||||||||+++|.|++. |
T Consensus 34 ~~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~ 108 (308)
T 1sq5_A 34 INEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP 108 (308)
T ss_dssp HCTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST
T ss_pred CccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 345799999999993 5899999998 9999999999999999999999999999 9
Q ss_pred CcceEEE---CCEeCCCCChHHhhcceEEEccCCccc-cccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcc
Q 005302 555 TNGQILI---DGFPIKEVDIKWLRGRIGFVGQEPKLF-RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYE 630 (703)
Q Consensus 555 ~sG~I~i---dG~di~~i~~~~lR~~I~~V~Qd~~LF-~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~Gyd 630 (703)
++|+|.+ ||.+.. ...++.+++| |+..++ .-|+.+|+.+.. .+..|-+
T Consensus 109 ~~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~-----------------------~l~~~~~ 160 (308)
T 1sq5_A 109 EHRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFVS-----------------------DLKSGVP 160 (308)
T ss_dssp TCCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHHH-----------------------HHTTTCS
T ss_pred CCCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHHH-----------------------HHhCCCC
Confidence 9999999 998753 2356678888 765432 234555554321 0111111
Q ss_pred -cccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Q 005302 631 -TLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALD 669 (703)
Q Consensus 631 -T~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD 669 (703)
...-.-..+.+ +|+..+.+...+|+++|+|.+..-.|
T Consensus 161 ~i~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 161 NVTAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp CEEECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCC
T ss_pred ceeccccccccc--CcccccceecCCCCEEEECchhhCCC
Confidence 00000011222 34433345667899999999887665
No 136
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.23 E-value=4.3e-12 Score=128.27 Aligned_cols=108 Identities=17% Similarity=0.238 Sum_probs=73.7
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhc--CCCC-----CcceEEECCEeCC-CCChHHhhcceEEEccCCccccccHHHH
Q 005302 524 SVNPGEVVAIAGLSGSGKSTLVNLLLR--LYEP-----TNGQILIDGFPIK-EVDIKWLRGRIGFVGQEPKLFRMDISSN 595 (703)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlg--ly~p-----~sG~I~idG~di~-~i~~~~lR~~I~~V~Qd~~LF~gTI~eN 595 (703)
-|++|+.++|+||||||||||++.+++ ..+| .+|.+++++.+.- .-....+++.+++.+|+ +.||
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5665 6789999987631 11233455667777664 5678
Q ss_pred hccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHH
Q 005302 596 ISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAE 671 (703)
Q Consensus 596 I~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~ 671 (703)
+.+.. ..+.++..+..+ .+.+.+. -.+|+++++||+|+.+|.+
T Consensus 93 ~~~~~--~~~~~~~~~~~~--~~~~~~~-----------------------------~~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 93 VAYAR--AFNTDHQTQLLY--QASAMMV-----------------------------ESRYALLIVDSATALYRTD 135 (243)
T ss_dssp EEEEE--CCSHHHHHHHHH--HHHHHHH-----------------------------HSCEEEEEEETSSGGGC--
T ss_pred eEEEe--cCCHHHHHHHHH--HHHHHHh-----------------------------cCCceEEEEeCchHHHHHH
Confidence 77653 233344333221 1112111 1689999999999999986
No 137
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.20 E-value=3e-12 Score=135.42 Aligned_cols=103 Identities=17% Similarity=0.140 Sum_probs=70.3
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEE---CCEeCCCCChHHhhcceEEEccCCcc------------
Q 005302 523 ISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILI---DGFPIKEVDIKWLRGRIGFVGQEPKL------------ 587 (703)
Q Consensus 523 l~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~i---dG~di~~i~~~~lR~~I~~V~Qd~~L------------ 587 (703)
|++.+|+.++|+||||||||||+++|+|+..|++|+|.+ +|.++.........+.+|+|+|+|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 567899999999999999999999999999999999999 99998765422112469999999853
Q ss_pred ----c-cccHHHHhccCCC--CCCCHHHHHHHHHHhchH-HHHHcCC
Q 005302 588 ----F-RMDISSNISYGCT--QDIKQQDIEWAAKQAYAH-DFIMSLP 626 (703)
Q Consensus 588 ----F-~gTI~eNI~~g~~--~~~~~e~i~~aa~~A~l~-d~I~~LP 626 (703)
| .-|+ ||+.|..- .....+++.++++..++. +...+.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 3 3467 99998531 123356799999999994 5555444
No 138
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.18 E-value=1.4e-12 Score=134.33 Aligned_cols=99 Identities=23% Similarity=0.194 Sum_probs=76.9
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh---cCCCCCcceEE--------ECCEeC-CCCChHHhhcceEEEcc
Q 005302 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL---RLYEPTNGQIL--------IDGFPI-KEVDIKWLRGRIGFVGQ 583 (703)
Q Consensus 516 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLl---gly~p~sG~I~--------idG~di-~~i~~~~lR~~I~~V~Q 583 (703)
+++++.+ ++|+.+||+|||||||||++++|+ |++.|++|.|+ .+|.++ .......+++.+++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 4555544 899999999999999999999999 99999999999 999998 45678899999999996
Q ss_pred C------CccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcC
Q 005302 584 E------PKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSL 625 (703)
Q Consensus 584 d------~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~L 625 (703)
+ .+++..++.+||. .+++.+++..+..++.|.+.
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~--------~~~v~~~~s~~~~~~~vr~~ 134 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR--------TETVGNTASQAAAFPRVREA 134 (252)
T ss_dssp EETTEEEEEETTEECTTGGG--------SHHHHHHHHHHTTSHHHHHH
T ss_pred cCCCCceEEECCeehhHHHH--------HHHHHHHHHHhcccHHHHHH
Confidence 4 5677788888765 25566666666666666443
No 139
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.18 E-value=1.7e-11 Score=145.25 Aligned_cols=145 Identities=14% Similarity=0.165 Sum_probs=89.8
Q ss_pred CcEEEEEEEEEcCCC----CCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-CCcceEEECCEeCCCCChH
Q 005302 498 GRIDFVDVSFRYSSR----EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-PTNGQILIDGFPIKEVDIK 572 (703)
Q Consensus 498 g~I~~~nVsF~Y~~~----~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-p~sG~I~idG~di~~i~~~ 572 (703)
+.|++++. ++|-- .+..|++|+||+ ++|+.++|+|||||||||++|+++|+.. .+.|. .+..
T Consensus 576 ~~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA---- 642 (800)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS----
T ss_pred CCEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch----
Confidence 35777765 33320 135799999999 9999999999999999999999999753 23331 2211
Q ss_pred HhhcceEEEccCCcccc-ccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005302 573 WLRGRIGFVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (703)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (703)
-+..++++.| +|. -++.||+..+ .+.+|+|++| ++.+..
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~-----------------------------------~stf~~e~~~-~~~il~ 682 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG-----------------------------------RSTFMVEMTE-TANILH 682 (800)
T ss_dssp -SEEEECCCCE---EEEEEC----------------------------------------------CHHHHHH-HHHHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh-----------------------------------hhhhhHHHHH-HHHHHH
Confidence 1245666655 332 1233332211 1346777765 444455
Q ss_pred hcCCCCEEEEeCCCCCCCHHHHH----HHHHHHHh--CCcEEEEecchhH
Q 005302 652 ILRDPTILILDEATSALDAESEH----NIKVATLS--NGLLVKSLHFLSL 695 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~tE~----~I~~al~~--~~~~~~~~~~~~~ 695 (703)
...+|+++||||||+++|+.... .+.+.+.+ -...+-+-|+..+
T Consensus 683 ~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el 732 (800)
T 1wb9_A 683 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 732 (800)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred hccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHH
Confidence 68999999999997777764433 34445544 3456778888765
No 140
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.18 E-value=1.7e-11 Score=119.34 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=44.3
Q ss_pred CCCChHHHHHHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 636 DLLSGGQKQRIAIARAIL----RDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 636 ~~LSGGQkQRIaLARAL~----r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
..||||||||++|||||. ++|+++||||||++||+.+++.+.+.|++.
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~ 114 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKES 114 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHh
Confidence 379999999999999994 778999999999999999999999998764
No 141
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.17 E-value=1.4e-13 Score=139.32 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=43.6
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh-cCC------------CCCcceEEECCEeCCCCChHHhhcceEEE
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL-RLY------------EPTNGQILIDGFPIKEVDIKWLRGRIGFV 581 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLl-gly------------~p~sG~I~idG~di~~i~~~~lR~~I~~V 581 (703)
....+++||++++|+.++|+||||||||||+++|+ |++ +|..|++ +|.++...+.+.+... +
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~ 88 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---C 88 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---H
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---h
Confidence 34678999999999999999999999999999999 999 7777765 6665555555554432 2
Q ss_pred ccCCccccccHHHHh
Q 005302 582 GQEPKLFRMDISSNI 596 (703)
Q Consensus 582 ~Qd~~LF~gTI~eNI 596 (703)
.++..++.+++.+|+
T Consensus 89 ~~~~~~~~~~~~~~~ 103 (231)
T 3lnc_A 89 SNGEIIEHAEVFGNF 103 (231)
T ss_dssp HTTCEEEEEEETTEE
T ss_pred hcCceehhhhhcccc
Confidence 344444445555554
No 142
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.15 E-value=1.6e-11 Score=146.20 Aligned_cols=122 Identities=20% Similarity=0.270 Sum_probs=83.9
Q ss_pred CCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHH-------HHHHHHHhchHHHHH
Q 005302 551 LYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQD-------IEWAAKQAYAHDFIM 623 (703)
Q Consensus 551 ly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~-------i~~aa~~A~l~d~I~ 623 (703)
=|.|....|.++|.+|.+ +...||.|++.|+..-..+.++ +.+..+.. +++.
T Consensus 431 rl~~~~l~v~~~g~~i~q------------------~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~ 489 (972)
T 2r6f_A 431 RLKKESLAVLVGGKHIGE------------------VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQ 489 (972)
T ss_dssp CBCTTTTTEESSSCBHHH------------------HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH---HHHH
T ss_pred ccCHHHheeEECCCcHHH------------------HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHhh
Confidence 357888999999987654 4667889999887432233311 12222222 2344
Q ss_pred cCCCCcccccCC--CCCChHHHHHHHHHHHhcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHhCCc----EEEEecchh
Q 005302 624 SLPSGYETLVDD--DLLSGGQKQRIAIARAILRDP--TILILDEATSALDAESEHNIKVATLSNGL----LVKSLHFLS 694 (703)
Q Consensus 624 ~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p--~ILILDEaTSaLD~~tE~~I~~al~~~~~----~~~~~~~~~ 694 (703)
.+--+|-+ ... .+|||||||||+||+||..+| ++|||||||++||+..-+.+.+.|+++.+ ++=.=|-+.
T Consensus 490 ~vGL~~l~-ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~ 567 (972)
T 2r6f_A 490 NVGLDYLT-LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED 567 (972)
T ss_dssp HHTCTTSB-SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH
T ss_pred hCCCCccc-cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 43333322 222 489999999999999999985 99999999999999999999988876542 455556654
No 143
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.15 E-value=1.4e-11 Score=130.64 Aligned_cols=98 Identities=18% Similarity=0.355 Sum_probs=74.8
Q ss_pred eeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCC
Q 005302 521 VNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGC 600 (703)
Q Consensus 521 isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~ 600 (703)
++++.++|+.++|+|++||||||+++.|++++.++.|+|.+.+.|..... .
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~---------------------a-------- 147 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA---------------------A-------- 147 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH---------------------H--------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH---------------------H--------
Confidence 45667899999999999999999999999999999999999887753210 0
Q ss_pred CCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHH---HHHHHhcCCCCEEEEeCCCC
Q 005302 601 TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI---AIARAILRDPTILILDEATS 666 (703)
Q Consensus 601 ~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRI---aLARAL~r~p~ILILDEaTS 666 (703)
.+++...++..++ | . + ...|||+.|++ +++||+.++|+++|+|||..
T Consensus 148 -----~eqL~~~~~~~gl-------~----~-~--~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 148 -----IEQLKIWGERVGA-------T----V-I--SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -----HHHHHHHHHHHTC-------E----E-E--CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -----HHHHHHHHHHcCC-------c----E-E--ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 1222223332221 1 1 1 24689999999 99999999999999999985
No 144
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.13 E-value=1.7e-11 Score=137.03 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=55.7
Q ss_pred EEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC
Q 005302 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD 570 (703)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~ 570 (703)
.+.+++... ..+|+|+||+|++ |++||+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 455565432 2479999999999 999999999999999999999999999999999999987554
No 145
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.11 E-value=5.2e-11 Score=112.97 Aligned_cols=44 Identities=30% Similarity=0.441 Sum_probs=36.8
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc--eEEECCEeC
Q 005302 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG--QILIDGFPI 566 (703)
Q Consensus 517 vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG--~I~idG~di 566 (703)
+++++ +|+.++|+||+|||||||++.++|.+.+ +| .+++++.++
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASM 75 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTS
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHh
Confidence 56665 9999999999999999999999999987 57 666666443
No 146
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.08 E-value=1e-11 Score=136.99 Aligned_cols=132 Identities=17% Similarity=0.228 Sum_probs=85.2
Q ss_pred ceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhc
Q 005302 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNIS 597 (703)
Q Consensus 518 L~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~ 597 (703)
-+++||++++|+.|+|||++|||||||++.|+|..+ .+.+.+...+ ...+++|.|++ -..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~-~~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSE-EERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSS-SCEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecC-cceEEEEeccc
Confidence 489999999999999999999999999999999843 4555555443 44678888875 12224444433
Q ss_pred cCCC----CCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHH
Q 005302 598 YGCT----QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAE 671 (703)
Q Consensus 598 ~g~~----~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~ 671 (703)
+... .........+ .+ .++..+.- +|-. .+ .+||+||+||.++||||..+|.|+++ +.+|..
T Consensus 215 li~~a~~~~~L~~~fl~~-~e--ra~~lL~v----vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRH-IA--RTRVLLYV----LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHH-HT--SSSEEEEE----EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHH-HH--HHHhhhEE----eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 3210 0111111111 00 11111111 1111 12 36999999999999999999999999 889986
Q ss_pred HH
Q 005302 672 SE 673 (703)
Q Consensus 672 tE 673 (703)
++
T Consensus 283 ~~ 284 (416)
T 1udx_A 283 EE 284 (416)
T ss_dssp CH
T ss_pred hH
Confidence 54
No 147
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.06 E-value=2.3e-13 Score=141.78 Aligned_cols=138 Identities=17% Similarity=0.181 Sum_probs=99.2
Q ss_pred EEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEE
Q 005302 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF 580 (703)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~ 580 (703)
+++++...|.. +.+++++++++++| ++|+||+|||||||++.|++... .|.|.++|.++.+......++.++.
T Consensus 51 ~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 45667777752 56899999999999 99999999999999999999986 7999999988765555556677888
Q ss_pred EccCCc-cc-cccHHHHh-ccCCCCCC----CHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 581 VGQEPK-LF-RMDISSNI-SYGCTQDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 581 V~Qd~~-LF-~gTI~eNI-~~g~~~~~----~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
++|+.. .+ .-++.||| .++..... ..++..+.+ .+.+. .|||||+||..+|+|+.
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~-----~~ll~-------------~lsgg~~~~~~i~~a~t 185 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV-------------EMDGFEKDTAIVVMAAT 185 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH-----HHHHH-------------HHTTCCTTCCEEEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH-----HHHHH-------------HHhCCCCCCCEEEEEec
Confidence 888864 33 34567888 44321110 111222111 12221 37899999999999999
Q ss_pred CCCCEEEEeCCC
Q 005302 654 RDPTILILDEAT 665 (703)
Q Consensus 654 r~p~ILILDEaT 665 (703)
.+|++ |||+.
T Consensus 186 ~~p~~--ld~~l 195 (278)
T 1iy2_A 186 NRPDI--LDPAL 195 (278)
T ss_dssp SCTTS--SCHHH
T ss_pred CCchh--CCHhH
Confidence 99987 78764
No 148
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.05 E-value=1.6e-11 Score=120.24 Aligned_cols=142 Identities=22% Similarity=0.105 Sum_probs=81.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-----------CcceEEECCEeCCC--CChHHhhcceEEEccCCccccccHHHHh
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLYEP-----------TNGQILIDGFPIKE--VDIKWLRGRIGFVGQEPKLFRMDISSNI 596 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly~p-----------~sG~I~idG~di~~--i~~~~lR~~I~~V~Qd~~LF~gTI~eNI 596 (703)
+++|+|++|||||||++.++|...| ++|+|.+||.++.- ++....++..++++|...-.++ .|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~----~i 106 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG----AL 106 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE----EE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE----EE
Confidence 7999999999999999999998765 58999999987531 2211122223333332110000 01
Q ss_pred ccCCCCCCCHHHHHHHHHHhchHHHHHc-CCCCcc-cccCC-CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHH
Q 005302 597 SYGCTQDIKQQDIEWAAKQAYAHDFIMS-LPSGYE-TLVDD-DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESE 673 (703)
Q Consensus 597 ~~g~~~~~~~e~i~~aa~~A~l~d~I~~-LP~Gyd-T~vGe-~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE 673 (703)
...+ ..+.+...++.+. .+.+.. -+.+.- -.++. ..|..-..++..+|||+.++|+++++| ||++|.++.
T Consensus 107 ~v~d--~~~~~s~~~~~~~---~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v 179 (191)
T 1oix_A 107 LVYD--IAKHLTYENVERW---LKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNV 179 (191)
T ss_dssp EEEE--TTCHHHHHTHHHH---HHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTH
T ss_pred EEEE--CcCHHHHHHHHHH---HHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCH
Confidence 1121 1112211111110 011111 011110 11232 244443345678999999999999999 999999999
Q ss_pred HHHHHHHHh
Q 005302 674 HNIKVATLS 682 (703)
Q Consensus 674 ~~I~~al~~ 682 (703)
..+.+.|.+
T Consensus 180 ~~l~~~l~~ 188 (191)
T 1oix_A 180 EAAFQTILT 188 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888754
No 149
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.02 E-value=3.1e-13 Score=138.66 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=107.3
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
.++++++..|.. +.+++++++++++| ++|+||+|||||||++.+++... .|.|.++|.++.+......++.++
T Consensus 26 ~~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 456677777752 56899999999999 99999999999999999999886 799999998876554455566788
Q ss_pred EEccCCc-cc-cccHHHHh-ccCCCCCC----CHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 580 FVGQEPK-LF-RMDISSNI-SYGCTQDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 580 ~V~Qd~~-LF-~gTI~eNI-~~g~~~~~----~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
.++|+.. .+ .-++.||| .++..... ..++..+.+ .+.+. .|||||+||..+|+|+
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll~-------------~l~g~~~~~~~i~~a~ 160 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV-------------EMDGFEKDTAIVVMAA 160 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHHH-------------HHHTCCTTCCEEEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHHH-------------HHhCCCCCCCEEEEEc
Confidence 8888764 23 34567777 44421110 111211111 12221 3789999999999999
Q ss_pred cCCCCEEEEeCCCCC------------CCHHHHHHHHHHH
Q 005302 653 LRDPTILILDEATSA------------LDAESEHNIKVAT 680 (703)
Q Consensus 653 ~r~p~ILILDEaTSa------------LD~~tE~~I~~al 680 (703)
..+|++ ||++.-. .|.+...+|.+..
T Consensus 161 t~~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 198 (254)
T 1ixz_A 161 TNRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRIH 198 (254)
T ss_dssp ESCGGG--SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred cCCchh--CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHH
Confidence 999997 7887642 3555556665544
No 150
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.02 E-value=4.1e-10 Score=134.59 Aligned_cols=105 Identities=17% Similarity=0.244 Sum_probs=70.8
Q ss_pred ccccccHHHHhccCCCCCCCHHHH-------HHHHHHhchHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcCC-
Q 005302 586 KLFRMDISSNISYGCTQDIKQQDI-------EWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD- 655 (703)
Q Consensus 586 ~LF~gTI~eNI~~g~~~~~~~e~i-------~~aa~~A~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL~r~- 655 (703)
.+++.||.|++.|+..-..+.++- .+..+.. +++..+.-+|-+ ... .+|||||||||+||+||..+
T Consensus 465 q~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl---~~L~~vGL~~l~-l~r~~~tLSGGEkQRV~LA~aL~~~~ 540 (993)
T 2ygr_A 465 EVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL---GFLLDVGLEYLS-LSRAAATLSGGEAQRIRLATQIGSGL 540 (993)
T ss_dssp CSSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH---HHHHHHTGGGSC-TTCBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HHhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH---HHHhhCCCCccc-cCCCcccCCHHHHHHHHHHHHHhhCC
Confidence 367789999999974322344211 1111221 233333222222 232 48999999999999999998
Q ss_pred -CCEEEEeCCCCCCCHHHHHHHHHHHHhCC----cEEEEecchh
Q 005302 656 -PTILILDEATSALDAESEHNIKVATLSNG----LLVKSLHFLS 694 (703)
Q Consensus 656 -p~ILILDEaTSaLD~~tE~~I~~al~~~~----~~~~~~~~~~ 694 (703)
|++|||||||++||+..-+.+.+.|+++. -++=.=|-+.
T Consensus 541 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~ 584 (993)
T 2ygr_A 541 VGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED 584 (993)
T ss_dssp CSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred CCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH
Confidence 59999999999999999999998887653 3555556654
No 151
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.02 E-value=1.1e-10 Score=128.16 Aligned_cols=108 Identities=17% Similarity=0.219 Sum_probs=71.7
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHH--HhcCCCCCcc-----eEEECCEeC-CCCChHHhhcceEEEccCCccccccHHHH
Q 005302 524 SVNPGEVVAIAGLSGSGKSTLVNL--LLRLYEPTNG-----QILIDGFPI-KEVDIKWLRGRIGFVGQEPKLFRMDISSN 595 (703)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkL--Llgly~p~sG-----~I~idG~di-~~i~~~~lR~~I~~V~Qd~~LF~gTI~eN 595 (703)
-|++|+.++|+||||||||||++. +.+..+|+.| .|++|+.+. +......+++.+++.+| ++.||
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 589999999999999999999994 4577776544 899999763 22223334566776665 67888
Q ss_pred hccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh--cCCCCEEEEeCCCCCCCHHHH
Q 005302 596 ISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI--LRDPTILILDEATSALDAESE 673 (703)
Q Consensus 596 I~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL--~r~p~ILILDEaTSaLD~~tE 673 (703)
|.+..+ .+.++..+..+. ++++ -.+|+++++||+|+.+|.+..
T Consensus 247 i~~~~~--~~~~~~~~~l~~---------------------------------~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 247 VAYARA--YNADHQLRLLDA---------------------------------AAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp EEEEEC--CSHHHHHHHHHH---------------------------------HHHHHHHSCEEEEEEETGGGGCC----
T ss_pred EEEecc--CChHHHHHHHHH---------------------------------HHHHHHhcCCceEEecchhhhCchhhc
Confidence 888743 233333222211 1121 147999999999999997643
No 152
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.01 E-value=4e-10 Score=118.82 Aligned_cols=130 Identities=16% Similarity=0.143 Sum_probs=91.9
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceE
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~ 579 (703)
+..+++++.|+.. . +++||+ +|++++++|++|+||||++..|++++.++.|+|.+.|.|.+.-...+
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~------ 143 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE------ 143 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH------
Confidence 5567788888632 1 778888 99999999999999999999999999999999999998876421110
Q ss_pred EEccCCccccccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEE
Q 005302 580 FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTIL 659 (703)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~IL 659 (703)
| +...++.. |++-.-+...-.-.+-||.+|+++..++++++
T Consensus 144 ---q-------------------------l~~~~~~~-----------~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~v 184 (295)
T 1ls1_A 144 ---Q-------------------------LRLLGEKV-----------GVPVLEVMDGESPESIRRRVEEKARLEARDLI 184 (295)
T ss_dssp ---H-------------------------HHHHHHHH-----------TCCEEECCTTCCHHHHHHHHHHHHHHHTCCEE
T ss_pred ---H-------------------------HHHhcccC-----------CeEEEEcCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 0 00011111 11111111112334567999999988999999
Q ss_pred EEeCC-CCCCCHHHHHHHHHHHH
Q 005302 660 ILDEA-TSALDAESEHNIKVATL 681 (703)
Q Consensus 660 ILDEa-TSaLD~~tE~~I~~al~ 681 (703)
|+||| |+++|...-+.+.+..+
T Consensus 185 iiDtpp~~~~d~~~~~~l~~~~~ 207 (295)
T 1ls1_A 185 LVDTAGRLQIDEPLMGELARLKE 207 (295)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHH
T ss_pred EEeCCCCccccHHHHHHHHHHhh
Confidence 99999 99999877766655544
No 153
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.01 E-value=6.1e-11 Score=116.83 Aligned_cols=153 Identities=15% Similarity=0.172 Sum_probs=96.3
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccH-HHHhccCC
Q 005302 522 NISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDI-SSNISYGC 600 (703)
Q Consensus 522 sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI-~eNI~~g~ 600 (703)
|+++++|+.++|+||||||||||+++|+|++ | .+.++|.++........+..++|++|++.+|.... .+|+....
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 5788999999999999999999999999997 4 68999988887766666888999999998887543 44443210
Q ss_pred -----CCCCCHHHHHHHHHHh----------chHHHHHcCCCCcccccC------------C-CCC-ChHHHHHHHHHHH
Q 005302 601 -----TQDIKQQDIEWAAKQA----------YAHDFIMSLPSGYETLVD------------D-DLL-SGGQKQRIAIARA 651 (703)
Q Consensus 601 -----~~~~~~e~i~~aa~~A----------~l~d~I~~LP~GydT~vG------------e-~~L-SGGQkQRIaLARA 651 (703)
....+.+++.++++.. ++.......|..+-..+- + ... ....++|+.-++.
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~ 156 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALARE 156 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHH
T ss_pred eeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 0012335565555442 333444455544222221 1 122 3456788888876
Q ss_pred hc---CCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 005302 652 IL---RDPTILILDEATSALDAESEHNIKVATLS 682 (703)
Q Consensus 652 L~---r~p~ILILDEaTSaLD~~tE~~I~~al~~ 682 (703)
.. +.++.+|.++ .+| ++.+++.+.|++
T Consensus 157 ~~~~~~~~d~vi~n~---~~~-~~~~~l~~~i~~ 186 (205)
T 3tr0_A 157 EMAHYKEFDYLVVND---NFD-QAVQNLIHIISA 186 (205)
T ss_dssp HHTTGGGCSEEEECS---SHH-HHHHHHHHHHHH
T ss_pred HHhcccCCCEEEECC---CHH-HHHHHHHHHHHH
Confidence 54 4578777755 333 344556666643
No 154
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.00 E-value=7.3e-11 Score=125.01 Aligned_cols=96 Identities=17% Similarity=0.192 Sum_probs=58.2
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEE---CCEeCCCCChHHhhcceEEEccCCcccc-----ccHHH
Q 005302 523 ISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILI---DGFPIKEVDIKWLRGRIGFVGQEPKLFR-----MDISS 594 (703)
Q Consensus 523 l~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~i---dG~di~~i~~~~lR~~I~~V~Qd~~LF~-----gTI~e 594 (703)
+++.+|++++|+||||+|||||+|.|+|+..|++|+|.+ +|.+..... +.++..+++|+|+|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567899999999999999999999999999999999999 898876532 223333899999998764 577 9
Q ss_pred Hhc--cC------------C--CCCCCHHHHHHHHHHhchHH
Q 005302 595 NIS--YG------------C--TQDIKQQDIEWAAKQAYAHD 620 (703)
Q Consensus 595 NI~--~g------------~--~~~~~~e~i~~aa~~A~l~d 620 (703)
|+. |. + ..+.....+.++++..++.+
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence 993 21 0 11223456778888777754
No 155
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.99 E-value=6.9e-13 Score=142.22 Aligned_cols=93 Identities=17% Similarity=0.263 Sum_probs=72.1
Q ss_pred EEEEEEEEcCCCCCcccceeeeEEecCC-------cEEEEEcCCCCcHHHHHHHHhcCC----CCCcceEEECCEeCCCC
Q 005302 501 DFVDVSFRYSSREMVPVLQHVNISVNPG-------EVVAIAGLSGSGKSTLVNLLLRLY----EPTNGQILIDGFPIKEV 569 (703)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~isl~I~~G-------e~vAIVG~SGsGKSTLlkLLlgly----~p~sG~I~idG~di~~i 569 (703)
+.++++..|+. ..+++++++.|++| +.++|+||+|+|||||+++++|.+ .|++|.+..+|.++..+
T Consensus 20 r~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 20 RPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp SCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred CCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 34455555642 46899999999887 899999999999999999999998 78889888887776432
Q ss_pred ChHHhhcceEEEccCCccccccHHHHhc
Q 005302 570 DIKWLRGRIGFVGQEPKLFRMDISSNIS 597 (703)
Q Consensus 570 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~ 597 (703)
-....+..|.++.|.+.++. ++.|++.
T Consensus 97 ~~~~~~~~v~~iDE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHRLNK-AVEELLY 123 (334)
T ss_dssp HHHCCTTCEEEEETGGGCCH-HHHHHHH
T ss_pred HHHccCCCEEEEcchhhcCH-HHHHHHH
Confidence 11112567999999888775 8888774
No 156
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.98 E-value=8.8e-11 Score=114.88 Aligned_cols=125 Identities=22% Similarity=0.320 Sum_probs=71.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCC-------------CCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHH
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRLYE-------------PTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgly~-------------p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (703)
|+.++|+||||||||||+++|+|+++ |.+|++ ||.++...+.+.+++.+ .|+..++.+++.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 889986 99888877877777654 3777788888888
Q ss_pred HhccCCCCCCCHHHHHHHHHH----------hchHHHHHc--CCC------------CcccccCC--CCCChHHHHHHHH
Q 005302 595 NISYGCTQDIKQQDIEWAAKQ----------AYAHDFIMS--LPS------------GYETLVDD--DLLSGGQKQRIAI 648 (703)
Q Consensus 595 NI~~g~~~~~~~e~i~~aa~~----------A~l~d~I~~--LP~------------GydT~vGe--~~LSGGQkQRIaL 648 (703)
|+ ||.+ .+++.++++. .++. .+.. .++ -+...+-+ ..-....+||+.-
T Consensus 76 ~~-yg~~----~~~i~~~l~~g~~~il~~~~~g~~-~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~ 149 (186)
T 3a00_A 76 NY-YGST----VASVKQVSKSGKTCILDIDMQGVK-SVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSA 149 (186)
T ss_dssp EE-EEEE----HHHHHHHHHTTCEEEEECCHHHHH-HHHTCGGGCCEEEEEECSCC------------------------
T ss_pred ee-ccCc----HHHHHHHHHcCCeEEEEEcHHHHH-HHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 86 6632 4555555544 1211 1222 111 22222222 1234567889999
Q ss_pred HHHhc-----CCCCEEEEeC
Q 005302 649 ARAIL-----RDPTILILDE 663 (703)
Q Consensus 649 ARAL~-----r~p~ILILDE 663 (703)
|++-+ +.++.+|..+
T Consensus 150 ~~~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 150 AQAELAYAETGAHDKVIVND 169 (186)
T ss_dssp ---------CCCCSEEEECS
T ss_pred HHHHHHhhcccCCcEEEECc
Confidence 98765 5678877765
No 157
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.97 E-value=8.2e-11 Score=116.83 Aligned_cols=83 Identities=20% Similarity=0.257 Sum_probs=69.0
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-------------CCcceEEECCEeCCCCChHHhhcceEEEccCCccc
Q 005302 522 NISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-------------PTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLF 588 (703)
Q Consensus 522 sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~-------------p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF 588 (703)
|+...+|+.++|+||||||||||++.|++.++ |..|+ +||+|+.-++.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34456899999999999999999999999986 88898 799999999999999876 6999999
Q ss_pred cccHHHHhccCCCCCCCHHHHHHHHH
Q 005302 589 RMDISSNISYGCTQDIKQQDIEWAAK 614 (703)
Q Consensus 589 ~gTI~eNI~~g~~~~~~~e~i~~aa~ 614 (703)
.+++.+| .||.+ .+.++++.+
T Consensus 88 ~~~~~~n-~YGt~----~~~v~~~l~ 108 (197)
T 3ney_A 88 FGSYQGN-MFGTK----FETVHQIHK 108 (197)
T ss_dssp EEEETTE-EEEEE----HHHHHHHHH
T ss_pred hhhhhce-ecccc----hhhHHHHHh
Confidence 9999999 58843 444555444
No 158
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.95 E-value=1.6e-10 Score=112.11 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=33.5
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcce
Q 005302 522 NISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQ 558 (703)
Q Consensus 522 sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~ 558 (703)
|+++++|+.++|+||+|||||||++.+++.+.|++|.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 4678899999999999999999999999999877773
No 159
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.94 E-value=2.6e-11 Score=123.13 Aligned_cols=75 Identities=12% Similarity=0.174 Sum_probs=53.5
Q ss_pred cEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC--------
Q 005302 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD-------- 570 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~-------- 570 (703)
.|+++|++..|. . ++++++ +.++|+||||||||||+++|+|++.|++|+|.+||.++....
T Consensus 9 ~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 588898865552 1 466667 899999999999999999999999999999999999984322
Q ss_pred hHHhhcceEEEccC
Q 005302 571 IKWLRGRIGFVGQE 584 (703)
Q Consensus 571 ~~~lR~~I~~V~Qd 584 (703)
....+..+++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 23357889999986
No 160
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.92 E-value=1.2e-10 Score=113.40 Aligned_cols=81 Identities=15% Similarity=0.107 Sum_probs=63.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CcceEE----------ECCEeCCCCChHHhhcceEEEccCCccccccHHH
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEP-TNGQIL----------IDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-~sG~I~----------idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (703)
.+|+.++|+||||||||||+++|++++++ ..|.|. +||.++..++.+.+++. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999999873 344443 47888888888888774 57899999999999
Q ss_pred HhccCCCCCCCHHHHHHHHH
Q 005302 595 NISYGCTQDIKQQDIEWAAK 614 (703)
Q Consensus 595 NI~~g~~~~~~~e~i~~aa~ 614 (703)
| .+|.+ .+.+.++++
T Consensus 80 n-~yg~~----~~~i~~~l~ 94 (180)
T 1kgd_A 80 A-MYGTK----LETIRKIHE 94 (180)
T ss_dssp E-EEEEE----HHHHHHHHH
T ss_pred c-ccccc----HHHHHHHHH
Confidence 9 56632 455555554
No 161
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.89 E-value=3.2e-10 Score=112.37 Aligned_cols=103 Identities=19% Similarity=0.167 Sum_probs=65.5
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCC
Q 005302 523 ISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQ 602 (703)
Q Consensus 523 l~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~ 602 (703)
=++++|+.++|+|+|||||||+++.|.+.++ .+.+|+||++++++ +|+.++.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~~- 68 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDKN- 68 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCTT-
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcccc-
Confidence 4688999999999999999999999999985 48999999999987 78876533
Q ss_pred CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCC
Q 005302 603 DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEA 664 (703)
Q Consensus 603 ~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEa 664 (703)
...+.++.++.+.+.+.+++.++..+. + .-.++.|.++ ..+++++|+|=+
T Consensus 69 ~~~~~~~~~~~~~~~l~~~i~~~l~~~---~-~~~~~~~~~~--------~~~~~~vi~eg~ 118 (207)
T 2qt1_A 69 GFLQYDVLEALNMEKMMSAISCWMESA---R-HSVVSTDQES--------AEEIPILIIEGF 118 (207)
T ss_dssp SCBCCSSGGGBCHHHHHHHHHHHHHHH---T-TSSCCC-------------CCCCEEEEECT
T ss_pred CCChhHHHHHhHHHHHHHHHHHHHhCC---C-CCCcCCCeee--------cCCCCEEEEeeh
Confidence 222222223334444444443322110 0 1135556554 456778888543
No 162
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.86 E-value=6.7e-10 Score=109.06 Aligned_cols=139 Identities=22% Similarity=0.139 Sum_probs=77.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC-----CCC------cceEEECCEeCC-----CCChHHhhcceEEEccCCccccccHH
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY-----EPT------NGQILIDGFPIK-----EVDIKWLRGRIGFVGQEPKLFRMDIS 593 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly-----~p~------sG~I~idG~di~-----~i~~~~lR~~I~~V~Qd~~LF~gTI~ 593 (703)
+++|+|++|||||||++.++|.. .|+ +|+|.+||.++. .-+.+.+++......|+...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~------ 80 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVG------ 80 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSE------
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCE------
Confidence 68999999999999999999984 243 679999998652 22334444433333333211
Q ss_pred HHhccCCCCCCCHHHHHHHHHHhchHHHHHcC-CCCcc-cccCC-CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCH
Q 005302 594 SNISYGCTQDIKQQDIEWAAKQAYAHDFIMSL-PSGYE-TLVDD-DLLSGGQKQRIAIARAILRDPTILILDEATSALDA 670 (703)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~L-P~Gyd-T~vGe-~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~ 670 (703)
-|...+ -.+.....++... .+.+... +.+.. -.++. ..|..-.......||++.++|+++++| ||++|.
T Consensus 81 -~i~v~d--~~~~~s~~~~~~~---~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~Sal~~ 152 (199)
T 2f9l_A 81 -ALLVYD--IAKHLTYENVERW---LKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIE--TSALDS 152 (199)
T ss_dssp -EEEEEE--TTCHHHHHTHHHH---HHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTC
T ss_pred -EEEEEE--CcCHHHHHHHHHH---HHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEE--EeCCCC
Confidence 011111 1111212111110 1111111 11111 12232 234322222356699999999999999 999999
Q ss_pred HHHHHHHHHHHh
Q 005302 671 ESEHNIKVATLS 682 (703)
Q Consensus 671 ~tE~~I~~al~~ 682 (703)
++-..+.+.|.+
T Consensus 153 ~~i~~l~~~l~~ 164 (199)
T 2f9l_A 153 TNVEEAFKNILT 164 (199)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 988888777653
No 163
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.83 E-value=1e-10 Score=135.09 Aligned_cols=157 Identities=17% Similarity=0.142 Sum_probs=104.9
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc-ceEEECCEeCCCCChHHhhcceEEEccCCc-------
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN-GQILIDGFPIKEVDIKWLRGRIGFVGQEPK------- 586 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~s-G~I~idG~di~~i~~~~lR~~I~~V~Qd~~------- 586 (703)
..+++++++.+++|+.+.|+||||||||||++.|.|++++.. |.+.+++.+.... ...+++++|...
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 468999999999999999999999999999999999999988 8999988877653 456888876541
Q ss_pred ---------------cc-cccHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005302 587 ---------------LF-RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (703)
Q Consensus 587 ---------------LF-~gTI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (703)
.| ..++.+|+..++. ......+... ......+.+.... ++..- ...+|+|++|++..++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~-~~~~~~~v~~-~~~~~~~L~G~~~--~~~~~-~g~~~~g~~~~i~~g~ 196 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNC-GRTKAPFIDA-TGAHAGALLGDVR--HDPFQ-SGGLGTPAHERVEPGM 196 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCT-TCSSCCEEEC-TTCCHHHHHCEEC--CCCC-----CCCCGGGGEECCH
T ss_pred HHhhccchhhhhhcccccccccccceeeccc-cCCCCCEEEc-CCCCHHhcCceEE--echhh-cCCccccccccccCce
Confidence 00 1223333332211 0000000000 0001111221111 11100 0369999999999999
Q ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 005302 651 AILRDPTILILDEATSALDAESEHNIKVATLS 682 (703)
Q Consensus 651 AL~r~p~ILILDEaTSaLD~~tE~~I~~al~~ 682 (703)
....++.+|+|||... |+++....+.+.|++
T Consensus 197 ~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999998 899999999999985
No 164
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.83 E-value=1.7e-11 Score=119.87 Aligned_cols=125 Identities=17% Similarity=0.074 Sum_probs=77.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccc-cccHHHHhccCCCCCCCH
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLF-RMDISSNISYGCTQDIKQ 606 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF-~gTI~eNI~~g~~~~~~~ 606 (703)
|+.++|+|||||||||+++.|++ |.+|.+.+||.++.+. ..+++++|+...+ ..|+.+|+.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 78999999999999999999998 6789999999766432 2356677765322 23555555432
Q ss_pred HHHHHHHHHhchHHHHHc-CCCCcccccCC------CCC--ChHHHHHHHHHH------HhcCCCCEEEEeCCCCCCCHH
Q 005302 607 QDIEWAAKQAYAHDFIMS-LPSGYETLVDD------DLL--SGGQKQRIAIAR------AILRDPTILILDEATSALDAE 671 (703)
Q Consensus 607 e~i~~aa~~A~l~d~I~~-LP~GydT~vGe------~~L--SGGQkQRIaLAR------AL~r~p~ILILDEaTSaLD~~ 671 (703)
++. +... -+.=.+...+. ..+ |+||+|++.++. +++++|+...+|+ .+|++
T Consensus 66 ------~~~-----~~~~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~ 131 (189)
T 2bdt_A 66 ------TVN-----FLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGER 131 (189)
T ss_dssp ------HHH-----HHHTTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGG
T ss_pred ------HHH-----HHhcCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHH
Confidence 111 1110 00001211121 134 889988988888 8888888888884 68887
Q ss_pred HHHHHHHHHHhC
Q 005302 672 SEHNIKVATLSN 683 (703)
Q Consensus 672 tE~~I~~al~~~ 683 (703)
..+. .+.++..
T Consensus 132 ~~~~-~~~~~~~ 142 (189)
T 2bdt_A 132 CLEL-VEEFESK 142 (189)
T ss_dssp GGHH-HHHHHHT
T ss_pred HHHH-HHHHhhc
Confidence 7666 6666554
No 165
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.82 E-value=4.8e-11 Score=129.94 Aligned_cols=137 Identities=15% Similarity=0.147 Sum_probs=90.1
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHH
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (703)
..+++++|+++++|+.++|+||+|||||||++.|+|.+ +|++..-+ .. .+.++..+|+++|+..+ +.|
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~~---~~~~~~~lg~~~q~~~~----l~d 223 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--LP---LDRLNFELGVAIDQFLV----VFE 223 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--SC---TTTHHHHHGGGTTCSCE----EET
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--cc---chhHHHHHHHhcchhHH----HHH
Confidence 46899999999999999999999999999999999964 68776511 11 12334458888988765 456
Q ss_pred HhccCCC--CCCC-HHHHHHHHHHhchHHHHHc---------CCCCccccc-----C--CCCCChHHHHHHHHHHHhcCC
Q 005302 595 NISYGCT--QDIK-QQDIEWAAKQAYAHDFIMS---------LPSGYETLV-----D--DDLLSGGQKQRIAIARAILRD 655 (703)
Q Consensus 595 NI~~g~~--~~~~-~e~i~~aa~~A~l~d~I~~---------LP~GydT~v-----G--e~~LSGGQkQRIaLARAL~r~ 655 (703)
++..... .+.. .+.+. ....+.+.+.. -|+-.+... . ...+++|.+||++.+.+++.+
T Consensus 224 d~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~ 300 (377)
T 1svm_A 224 DVKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPK 300 (377)
T ss_dssp TCCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCC
T ss_pred HHHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCC
Confidence 6665432 0000 01110 12234444321 011111111 1 136899999999999999999
Q ss_pred CCEEE-EeCCCC
Q 005302 656 PTILI-LDEATS 666 (703)
Q Consensus 656 p~ILI-LDEaTS 666 (703)
|++++ ||+|++
T Consensus 301 pDLliyLd~~~~ 312 (377)
T 1svm_A 301 DYLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHHTCTH
T ss_pred CCeEEEEeCCHH
Confidence 99988 898886
No 166
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.78 E-value=7.5e-09 Score=109.13 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=70.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIK 605 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~ 605 (703)
++|+.++++|++||||||+++.|++.+.|++| +++.++.+|++ ..+..|++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL--------- 153 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQL--------- 153 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHH---------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHH---------
Confidence 57999999999999999999999999998888 35677777763 22222322
Q ss_pred HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q 005302 606 QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVA 679 (703)
Q Consensus 606 ~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~a 679 (703)
...++..+ +| -... ..++..+.+++++ ++|+++|+| |+++|...+..+.+.
T Consensus 154 ----~~~~~~~g-------l~----~~~~----~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el 204 (296)
T 2px0_A 154 ----KTYAELLQ-------AP----LEVC----YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDEL 204 (296)
T ss_dssp ----HHHHTTTT-------CC----CCBC----SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHH
T ss_pred ----HHHHHhcC-------CC----eEec----CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHH
Confidence 22222211 11 1111 1245567888875 999999999 999998777666553
No 167
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.68 E-value=2.3e-09 Score=105.49 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=41.5
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCcc
Q 005302 523 ISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKL 587 (703)
Q Consensus 523 l~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~L 587 (703)
++|++|+.++|+|||||||||++++|.+++.|+.| +.+ +....+.. ...+..+++++|++..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~ 62 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDA 62 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHH
Confidence 47899999999999999999999999999988766 222 22222222 1122347778777543
No 168
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.67 E-value=1.9e-08 Score=109.20 Aligned_cols=57 Identities=28% Similarity=0.346 Sum_probs=48.9
Q ss_pred CCChHHHHHH------HHHHHhcCC-CCEEEEeCCCCCCCHHHHHHHHHHHHhCC---cEEEEecch
Q 005302 637 LLSGGQKQRI------AIARAILRD-PTILILDEATSALDAESEHNIKVATLSNG---LLVKSLHFL 693 (703)
Q Consensus 637 ~LSGGQkQRI------aLARAL~r~-p~ILILDEaTSaLD~~tE~~I~~al~~~~---~~~~~~~~~ 693 (703)
.|||||+||+ ++|||+.++ |++||||||||+||+++...+.+.|.++. .++-.-|-.
T Consensus 280 ~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~ 346 (371)
T 3auy_A 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHR 346 (371)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCG
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChH
Confidence 6999999988 678999999 99999999999999999999999998864 344444654
No 169
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.65 E-value=6.1e-10 Score=126.90 Aligned_cols=149 Identities=22% Similarity=0.263 Sum_probs=84.6
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-eEE-ECCEeCCC-------CCh---HHhhcceEEEccCCccccc
Q 005302 523 ISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG-QIL-IDGFPIKE-------VDI---KWLRGRIGFVGQEPKLFRM 590 (703)
Q Consensus 523 l~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG-~I~-idG~di~~-------i~~---~~lR~~I~~V~Qd~~LF~g 590 (703)
..+++|+.++|+|+||||||||+++|+|.+.|++| +|. +||.++.+ ++. ..+++.+++|.|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 35889999999999999999999999999999997 784 99987643 222 23556789999972
Q ss_pred cHHHHhccCCCC---CCCHHHHHHHHHHhchHHHHHcCCCCcccccCC--CC---------CChHHHHHHHHHHHhc--C
Q 005302 591 DISSNISYGCTQ---DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DL---------LSGGQKQRIAIARAIL--R 654 (703)
Q Consensus 591 TI~eNI~~g~~~---~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe--~~---------LSGGQkQRIaLARAL~--r 654 (703)
+..+|+.+.... ....++++++++..+ +|+.- =+++.+.. .. ..|..++...+-+.+| .
T Consensus 439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g--~f~~V---~L~~~~e~~~~R~~r~l~~~~~~~~i~~l~~~r~~~e~P~ 513 (552)
T 3cr8_A 439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVG--GFVEI---HVATPIETCESRDRKGLYAKARAGLIPEFTGVSDPYEVPE 513 (552)
T ss_dssp HHTTCEEEECCCCCCHHHHHHHHHHHHTTS--EEEEE---EECC-----------------------------CCCCCCS
T ss_pred HhcCCEEEEecCCccHHHHHHHHHHHHHcC--CEEEE---EEcCCHHHHHHhccccccccccHhHHHHHHhccccccCCC
Confidence 456777654220 122344555555443 11000 01221111 01 1122233334444455 3
Q ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHHHHhCC
Q 005302 655 DPTILILDEATSALDAE-SEHNIKVATLSNG 684 (703)
Q Consensus 655 ~p~ILILDEaTSaLD~~-tE~~I~~al~~~~ 684 (703)
.|+ +++| |+.++++ .-++|.+.|++.+
T Consensus 514 ~ad-l~Id--t~~~s~~e~v~~Il~~L~~~~ 541 (552)
T 3cr8_A 514 TPE-LAID--TTGLAIDEAVQQILLKLEHEG 541 (552)
T ss_dssp SCS-EEEC--CSSCCHHHHHHHHHHHHHHHT
T ss_pred CCC-EEEE--CCCCCHHHHHHHHHHHHHhcC
Confidence 566 4556 7778764 5667777776543
No 170
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.64 E-value=4e-10 Score=126.93 Aligned_cols=144 Identities=15% Similarity=0.194 Sum_probs=85.2
Q ss_pred eeeEEecCCcEEEEEcCCCCcHHHHHHHHhc--CCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHH----
Q 005302 520 HVNISVNPGEVVAIAGLSGSGKSTLVNLLLR--LYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDIS---- 593 (703)
Q Consensus 520 ~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlg--ly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~---- 593 (703)
-+++++.+|..+.|.|+|||||||+++.|.. ++.++.|++.+.+.|.+......|.. =|+++. ++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecCHH
Confidence 3678899999999999999999999999876 77888899999999988765555542 122221 111
Q ss_pred ---HHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHH----------HHHHHhcCCCC-EE
Q 005302 594 ---SNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI----------AIARAILRDPT-IL 659 (703)
Q Consensus 594 ---eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRI----------aLARAL~r~p~-IL 659 (703)
+++..-. ...++-.+..+.+++.+. .+|+..+. ..+||||+||. ++||++-..|. ++
T Consensus 231 ~a~~~L~~~~---~EmerR~~ll~~~Gv~~i-----~~yn~~~~-~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 231 DAANALRWCV---NEMERRYKLMSALGVRNL-----AGYNEKIA-EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHTTCSSH-----HHHHHHHH-HHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHcCCccH-----HHHHHHHH-HHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 1111000 000011111111111110 01221111 14789998863 47788889998 89
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH
Q 005302 660 ILDEATSALDAESEHNIKVATL 681 (703)
Q Consensus 660 ILDEaTSaLD~~tE~~I~~al~ 681 (703)
++||+++.+|.. .+.+.+.+.
T Consensus 302 vIDE~~~ll~~~-~~~~~~~l~ 322 (512)
T 2ius_A 302 LVDEFADLMMTV-GKKVEELIA 322 (512)
T ss_dssp EEETHHHHHHHH-HHHHHHHHH
T ss_pred EEeCHHHHHhhh-hHHHHHHHH
Confidence 999999998843 234444443
No 171
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.62 E-value=1.3e-09 Score=107.74 Aligned_cols=62 Identities=29% Similarity=0.484 Sum_probs=48.1
Q ss_pred EEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceE--EECCEeCCC
Q 005302 503 VDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI--LIDGFPIKE 568 (703)
Q Consensus 503 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I--~idG~di~~ 568 (703)
+|+++.+.. ....+..++..++|+.++|+|||||||||+++.|.+.+. ..|.+ ++||.++..
T Consensus 3 ~~~~~~~~~---~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 3 TNIKWHECS---VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRH 66 (200)
T ss_dssp -------CC---CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTT
T ss_pred CCCcccccc---cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhh
Confidence 456655542 456788899999999999999999999999999999998 77998 999987753
No 172
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.60 E-value=4.1e-09 Score=108.46 Aligned_cols=52 Identities=21% Similarity=0.386 Sum_probs=36.0
Q ss_pred cEEEEEE-EEEcCCCCCcccceeeeEEecC---CcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 499 RIDFVDV-SFRYSSREMVPVLQHVNISVNP---GEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 499 ~I~~~nV-sF~Y~~~~~~~vL~~isl~I~~---Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.++++|| +|+|.+ +.++|+|+||+|++ |+.++|+|+|||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 35799999999999 9999999999999999999998854
No 173
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.60 E-value=8.3e-09 Score=99.82 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=49.0
Q ss_pred eeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE--eCCCCChH----HhhcceEEEccCC
Q 005302 519 QHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF--PIKEVDIK----WLRGRIGFVGQEP 585 (703)
Q Consensus 519 ~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~--di~~i~~~----~lR~~I~~V~Qd~ 585 (703)
+++++++.+| .++|+||||||||||++.|.+++.+..|...-.+. ++-..+.. ..+..|.++.|++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 6789999999 99999999999999999999998888776543332 11111110 2456799999985
No 174
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.58 E-value=2.6e-08 Score=116.21 Aligned_cols=131 Identities=19% Similarity=0.127 Sum_probs=94.3
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccC
Q 005302 522 NISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP--TNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYG 599 (703)
Q Consensus 522 sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p--~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g 599 (703)
|+++++|.+++|+|++|+|||||++.|++...+ +.|+| .+|.++.++...+.++.+++++|...++.+++..||.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467899999999999999999999999987765 78999 899999999999999999999999999999999998632
Q ss_pred CCCCCC-HHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEE---eCC
Q 005302 600 CTQDIK-QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILIL---DEA 664 (703)
Q Consensus 600 ~~~~~~-~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILIL---DEa 664 (703)
+...+ ..++..+++.++..-++-+.. ..++...++.+..++. .+-|.|+++ |.+
T Consensus 82 -pG~~~f~~~~~~~l~~ad~~ilVvD~~---------~g~~~qt~~~~~~~~~-~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 82 -PGYGDFVGEIRGALEAADAALVAVSAE---------AGVQVGTERAWTVAER-LGLPRMVVVTKLDKG 139 (665)
T ss_dssp -CCSGGGHHHHHHHHHHCSEEEEEEETT---------TCSCHHHHHHHHHHHH-TTCCEEEEEECGGGC
T ss_pred -CCccchHHHHHHHHhhcCcEEEEEcCC---------cccchhHHHHHHHHHH-ccCCEEEEecCCchh
Confidence 21222 255666666655433332222 2355555666666665 355666653 655
No 175
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.53 E-value=1.2e-08 Score=101.68 Aligned_cols=70 Identities=23% Similarity=0.250 Sum_probs=55.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CcceEE----------ECCEeCCCCChHHhhcceEEEccCCccccccHHH
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEP-TNGQIL----------IDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-~sG~I~----------idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (703)
++|+.++|+|||||||||+++.|++.++| ..+.+. .+|+++...+.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999987 333333 467777777888887765 6788888888777
Q ss_pred HhccC
Q 005302 595 NISYG 599 (703)
Q Consensus 595 NI~~g 599 (703)
| .||
T Consensus 83 ~-~yg 86 (208)
T 3tau_A 83 N-YYG 86 (208)
T ss_dssp E-EEE
T ss_pred c-cCC
Confidence 7 455
No 176
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.53 E-value=2.2e-09 Score=120.85 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=97.9
Q ss_pred EEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEE
Q 005302 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF 580 (703)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~ 580 (703)
+++++...|.+ +.+++++++++++| +.|+||+|+|||||++.+.+... .|.|.++|.++.+.-....++.+..
T Consensus 42 ~l~~lv~~l~~---~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHHC---GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhhc---hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 34555555642 46899999999999 99999999999999999999875 7899999998876555555666778
Q ss_pred EccCCc-ccc-ccHHHHh-ccCCCCCC----CHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005302 581 VGQEPK-LFR-MDISSNI-SYGCTQDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (703)
Q Consensus 581 V~Qd~~-LF~-gTI~eNI-~~g~~~~~----~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~ 653 (703)
++|+.. ... -.+.|+| .++..... ..++..+.+ ...+. .|||||+|+..+++|..
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~-------------~Ldg~~~~~~viviAat 176 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV-------------EMDGFEKDTAIVVMAAT 176 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH-------------HGGGCCSSCCCEEEECC
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH-------------HhcccccCccEEEEEec
Confidence 888864 232 3457788 44421110 122222221 12222 26788889999999999
Q ss_pred CCCCEEEEeCCCCC
Q 005302 654 RDPTILILDEATSA 667 (703)
Q Consensus 654 r~p~ILILDEaTSa 667 (703)
.+|++ ||||.-.
T Consensus 177 n~p~~--LD~aLlr 188 (499)
T 2dhr_A 177 NRPDI--LDPALLR 188 (499)
T ss_dssp SCGGG--SCTTTSS
T ss_pred CChhh--cCccccc
Confidence 99987 8988753
No 177
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.53 E-value=9.6e-09 Score=101.39 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=51.5
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccc-cHHHHhc
Q 005302 522 NISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRM-DISSNIS 597 (703)
Q Consensus 522 sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~g-TI~eNI~ 597 (703)
.++-++|+.++|+|+|||||||++++|.|.+ |.+.+||.++..- ....+..+++++|++..+.. ++.+|+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 94 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWPWLRSLAEWM 94 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccccHHHHHHHHH
Confidence 3667899999999999999999999999988 9999999887531 11223357889998766543 5666664
No 178
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.52 E-value=2e-08 Score=108.86 Aligned_cols=139 Identities=19% Similarity=0.270 Sum_probs=81.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-----------CCcceEEECCEeCCCCChHHhhcceEEEccCCcc----ccccHH-
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLYE-----------PTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKL----FRMDIS- 593 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly~-----------p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~L----F~gTI~- 593 (703)
.|+|||++|+|||||++.|+|... |++|.|.++|.++. +....|++.|.|.- |..|+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 499999999999999999999876 78899999998763 23345666553321 332322
Q ss_pred ----HHhccCCCCCCCHHH--HHHHHHHhchHHHHHcCC-CCcc-cccCC--CCCChHHHHHHHHH----HHh-cCCCCE
Q 005302 594 ----SNISYGCTQDIKQQD--IEWAAKQAYAHDFIMSLP-SGYE-TLVDD--DLLSGGQKQRIAIA----RAI-LRDPTI 658 (703)
Q Consensus 594 ----eNI~~g~~~~~~~e~--i~~aa~~A~l~d~I~~LP-~Gyd-T~vGe--~~LSGGQkQRIaLA----RAL-~r~p~I 658 (703)
|++.+-- ++++.. ..+..+ ...+.+..+. .+.- -.|+. ..+|+|++||+.++ +++ ..+|++
T Consensus 255 ~~~aD~il~Vv--D~s~~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~ 330 (364)
T 2qtf_A 255 AKYSDALILVI--DSTFSENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV 330 (364)
T ss_dssp GGGSSEEEEEE--ETTSCHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHhCCEEEEEE--ECCCCcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE
Confidence 2333221 111111 111111 1112222211 1111 11232 35788999988877 777 555565
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh
Q 005302 659 LILDEATSALDAESEHNIKVATLS 682 (703)
Q Consensus 659 LILDEaTSaLD~~tE~~I~~al~~ 682 (703)
+|||++|.+.-..+.+.|.+
T Consensus 331 ----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 331 ----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp ----EECBTTTTBSHHHHHHHHHH
T ss_pred ----EEEECCCCcCHHHHHHHHHH
Confidence 89999999988888877764
No 179
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.50 E-value=2.8e-08 Score=105.92 Aligned_cols=70 Identities=14% Similarity=0.249 Sum_probs=58.1
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCh----HHh-----hcceEEE-ccCCc
Q 005302 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI----KWL-----RGRIGFV-GQEPK 586 (703)
Q Consensus 517 vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~----~~l-----R~~I~~V-~Qd~~ 586 (703)
+++++||++++|+.++++|++|+||||++..|++.+.++.|+|++.+.|...... ..| +..+.++ +|+..
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 3467899999999999999999999999999999999999999999998865432 345 6678888 66543
No 180
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.50 E-value=3.2e-08 Score=97.57 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=25.1
Q ss_pred EcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 508 RYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 508 ~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+|++++..+.++|+||++++|+.++|+|+|||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 566666678999999999999999999999999999999999876
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.40 E-value=7.4e-08 Score=103.98 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=38.0
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhc--CCCCCcceEEECCEeC
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLR--LYEPTNGQILIDGFPI 566 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlg--ly~p~sG~I~idG~di 566 (703)
..+|+++++++| .|++||++|||||||++.|.| ++++.+|.+.-.+..+
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i 74 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVL 74 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEE
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEE
Confidence 358999999999 999999999999999999999 7788888776554433
No 182
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.33 E-value=5.7e-08 Score=104.97 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=50.5
Q ss_pred CCCcEEEEEEEEEcCCCCCcccce--------------eeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 496 LMGRIDFVDVSFRYSSREMVPVLQ--------------HVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 496 ~~g~I~~~nVsF~Y~~~~~~~vL~--------------~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
..+.|+|+||+|.||.. +.+|+ |+++.|.+||+++|+||||||||||++.|.+..
T Consensus 130 ~~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 130 ARNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HTTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred hcCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 45789999999999963 67899 899999999999999999999999999999985
No 183
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.32 E-value=2.2e-08 Score=101.21 Aligned_cols=64 Identities=19% Similarity=0.116 Sum_probs=50.7
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC------ChHH----hhcceEEEccCCcccc
Q 005302 522 NISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV------DIKW----LRGRIGFVGQEPKLFR 589 (703)
Q Consensus 522 sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i------~~~~----lR~~I~~V~Qd~~LF~ 589 (703)
+.+.++|+.++|+|++||||||++++|.|+ +|+|.++|.|.... .... .++.+++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 445689999999999999999999999998 79999999886432 1111 2457899999877654
No 184
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.22 E-value=1.1e-06 Score=94.73 Aligned_cols=40 Identities=28% Similarity=0.389 Sum_probs=30.7
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcce-EEECC
Q 005302 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQ-ILIDG 563 (703)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~-I~idG 563 (703)
-+++|+.+.|.||+|||||||+.-++.......|. ++++.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 48899999999999999999988777655444444 34444
No 185
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.21 E-value=8.9e-07 Score=99.13 Aligned_cols=98 Identities=19% Similarity=0.293 Sum_probs=66.0
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHH
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (703)
+..++++++++++| +.|+||+|+|||||++.+.+.... + +-.+ +..+
T Consensus 38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------~------------f~~i---------s~~~ 84 (476)
T 2ce7_A 38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------P------------FFHI---------SGSD 84 (476)
T ss_dssp THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------C------------EEEE---------EGGG
T ss_pred hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------C------------eeeC---------CHHH
Confidence 45778888888888 999999999999999999984310 0 0011 0001
Q ss_pred HhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCC----------
Q 005302 595 NISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEA---------- 664 (703)
Q Consensus 595 NI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEa---------- 664 (703)
.+.. .+| .|++++|-.+++|....|.||++||+
T Consensus 85 ~~~~---------------------------------~~g----~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~ 127 (476)
T 2ce7_A 85 FVEL---------------------------------FVG----VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG 127 (476)
T ss_dssp TTTC---------------------------------CTT----HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----
T ss_pred HHHH---------------------------------Hhc----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc
Confidence 0000 112 27899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 005302 665 TSALDAESEHNIKVATLS 682 (703)
Q Consensus 665 TSaLD~~tE~~I~~al~~ 682 (703)
+++.|.+.++.+++.+..
T Consensus 128 ~~g~~~~~~~~l~~LL~~ 145 (476)
T 2ce7_A 128 LGGGHDEREQTLNQLLVE 145 (476)
T ss_dssp -----CHHHHHHHHHHHH
T ss_pred cCcCcHHHHHHHHHHHHH
Confidence 446777777777666643
No 186
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.18 E-value=3.6e-07 Score=91.96 Aligned_cols=48 Identities=19% Similarity=0.289 Sum_probs=35.8
Q ss_pred ccceee-eEEecCCcEEEEEcCCCCcHHHHH-HHHhcCCCCCcceEEECC
Q 005302 516 PVLQHV-NISVNPGEVVAIAGLSGSGKSTLV-NLLLRLYEPTNGQILIDG 563 (703)
Q Consensus 516 ~vL~~i-sl~I~~Ge~vAIVG~SGsGKSTLl-kLLlgly~p~sG~I~idG 563 (703)
+.|+++ .--+++|+.++|+||+|||||||+ +++.+..++..+.+++++
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 456665 557999999999999999999995 455555555555566655
No 187
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.16 E-value=6.4e-07 Score=95.35 Aligned_cols=134 Identities=18% Similarity=0.204 Sum_probs=79.8
Q ss_pred EEEEcCCCCCcccceeeeEEecCCc------EEEEEcCCCCcHHHHHHHHhcCCC--CCcceEEECCEeCCCCChHHhhc
Q 005302 505 VSFRYSSREMVPVLQHVNISVNPGE------VVAIAGLSGSGKSTLVNLLLRLYE--PTNGQILIDGFPIKEVDIKWLRG 576 (703)
Q Consensus 505 VsF~Y~~~~~~~vL~~isl~I~~Ge------~vAIVG~SGsGKSTLlkLLlgly~--p~sG~I~idG~di~~i~~~~lR~ 576 (703)
+++.|++ ...|++++.++.+++ .+||+|||||||||++++|.+++. |++|+
T Consensus 66 l~~~~~~---~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~------------------ 124 (321)
T 3tqc_A 66 LSFYVTA---RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN------------------ 124 (321)
T ss_dssp HHHHHHH---HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC------------------
T ss_pred HHHhhcc---hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe------------------
Confidence 3444542 457888888888877 999999999999999999999997 45555
Q ss_pred ceEEEccCCccccccHHHHh----ccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005302 577 RIGFVGQEPKLFRMDISSNI----SYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (703)
Q Consensus 577 ~I~~V~Qd~~LF~gTI~eNI----~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (703)
+++++||.+..+....+.. .+|.|...|.+.+.+.. ..+..|-++.. --..|-+..+|+.-+...
T Consensus 125 -v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L---------~~L~~g~~~v~-~P~yd~~~~~r~~~~~~~ 193 (321)
T 3tqc_A 125 -VEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVL---------NAIKSGQRNVR-IPVYSHHYYDIVRGQYEI 193 (321)
T ss_dssp -EEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHH---------HHHHTTCSSEE-EEEEETTTTEEEEEEEEE
T ss_pred -EEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHH---------Hhhhccccccc-cchhhhhccccccCceee
Confidence 4555555555544433322 13334344555544433 33334431110 001222333343333445
Q ss_pred cCCCCEEEEeCCCCCCCH
Q 005302 653 LRDPTILILDEATSALDA 670 (703)
Q Consensus 653 ~r~p~ILILDEaTSaLD~ 670 (703)
...|+|+|+|.+-.-.|.
T Consensus 194 v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 194 VDQPDIVILEGLNILQTG 211 (321)
T ss_dssp ECSCSEEEEECTTTTCCC
T ss_pred ccCCCEEEEEcccccccc
Confidence 678999999987665554
No 188
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.14 E-value=5.7e-07 Score=88.77 Aligned_cols=48 Identities=27% Similarity=0.234 Sum_probs=42.1
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCh
Q 005302 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI 571 (703)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~ 571 (703)
..++|+.++|+|+|||||||+++.|.++++|..|.|.+.|.|......
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~ 65 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER 65 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCH
Confidence 367899999999999999999999999999999999988877655544
No 189
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.08 E-value=1.2e-06 Score=97.62 Aligned_cols=132 Identities=12% Similarity=0.151 Sum_probs=83.4
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-eEEECCEeCCCCChHHhhcce-EEEccCCccccccHH
Q 005302 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG-QILIDGFPIKEVDIKWLRGRI-GFVGQEPKLFRMDIS 593 (703)
Q Consensus 516 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG-~I~idG~di~~i~~~~lR~~I-~~V~Qd~~LF~gTI~ 593 (703)
+.|+++..-+++|+.+.|.|++|+|||||+.-+++...+..| .|.+-+.+ .+.+.+++++ +...+-+ .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~-------~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNIN-------A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCC-------H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCC-------H
Confidence 468888878999999999999999999999999998877555 56665533 3444444332 1111100 1
Q ss_pred HHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHhc--CCCCEEEEeCCCCCCC
Q 005302 594 SNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD-DLLSGGQKQRIAIARAIL--RDPTILILDEATSALD 669 (703)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe-~~LSGGQkQRIaLARAL~--r~p~ILILDEaTSaLD 669 (703)
+++.-| ..++++...+.+.+ +.+...| -.+-+ ..+|++|.+ +.||++. .+|+++|+|+++.-.+
T Consensus 261 ~~l~~g---~l~~~~~~~~~~a~---~~l~~~~----l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 261 QNLRTG---KLTPEDWGKLTMAM---GSLSNAG----IYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHTS---CCCHHHHHHHHHHH---HHHHSSC----EEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHhcC---CCCHHHHHHHHHHH---HHHhcCC----EEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhcc
Confidence 223223 33445443333222 2233322 22223 479999876 6677776 5799999999998774
No 190
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.00 E-value=1.9e-06 Score=82.51 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=41.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhc-ceEEEccC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRG-RIGFVGQE 584 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~-~I~~V~Qd 584 (703)
++|+.++|+|+|||||||+++.|.+.+ |.+.+|+.++.. ...+++ .+|.+.|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence 579999999999999999999999976 899999977753 222222 35666665
No 191
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.99 E-value=3.2e-06 Score=93.27 Aligned_cols=144 Identities=15% Similarity=0.117 Sum_probs=90.7
Q ss_pred EEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHH-hhcce
Q 005302 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW-LRGRI 578 (703)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~-lR~~I 578 (703)
+..++++..|++. . +++|++ +|+.++++|++||||||++..|++.+.++.|+|.+.+.|.......+ ++..
T Consensus 77 ~v~~~L~~~~~~~--~---~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~- 148 (425)
T 2ffh_A 77 TVYEALKEALGGE--A---RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL- 148 (425)
T ss_dssp HHHHHHHHHTTSS--C---CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCC--c---ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-
Confidence 3345566677542 1 678887 89999999999999999999999999999999999998876533221 2110
Q ss_pred EEEccCCccccccHHHHhccCCC-CCCCHHHHHHHHHHhchHHHHHcC-CCCcccccCC--CCC---ChHHHHHHHHHHH
Q 005302 579 GFVGQEPKLFRMDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSL-PSGYETLVDD--DLL---SGGQKQRIAIARA 651 (703)
Q Consensus 579 ~~V~Qd~~LF~gTI~eNI~~g~~-~~~~~e~i~~aa~~A~l~d~I~~L-P~GydT~vGe--~~L---SGGQkQRIaLARA 651 (703)
.=..|+-+... +..+..++. .+.+..+ ..+||..|=| ..+ .+...+...++|+
T Consensus 149 ------------~~~~gv~v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~ 208 (425)
T 2ffh_A 149 ------------GEKVGVPVLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (425)
T ss_dssp ------------HHHHTCCEEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred ------------cccCCccEEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhc
Confidence 00123332211 123344441 1222332 2578876644 122 2345677788898
Q ss_pred hcCCCCEEEEeCCCCCCCHHH
Q 005302 652 ILRDPTILILDEATSALDAES 672 (703)
Q Consensus 652 L~r~p~ILILDEaTSaLD~~t 672 (703)
+.-++-+|++| |++..|...
T Consensus 209 ~~pd~vlLVvD-a~tgq~av~ 228 (425)
T 2ffh_A 209 LGPDEVLLVLD-AMTGQEALS 228 (425)
T ss_dssp HCCSEEEEEEE-GGGTTHHHH
T ss_pred cCCceEEEEEe-ccchHHHHH
Confidence 87777788888 455555543
No 192
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.98 E-value=4.5e-06 Score=98.97 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=38.1
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHHHHH
Q 005302 637 LLSGGQKQRIAIARAILRDPTILILDEATS-ALDAESEHNIKVATL 681 (703)
Q Consensus 637 ~LSGGQkQRIaLARAL~r~p~ILILDEaTS-aLD~~tE~~I~~al~ 681 (703)
-+|+|+.||..++++++.+++++|+|||+. .||.+.-..+.+.+.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~ 235 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVV 235 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHH
Confidence 478999999999999999999999999997 899776555555444
No 193
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.92 E-value=1.1e-06 Score=84.76 Aligned_cols=42 Identities=33% Similarity=0.418 Sum_probs=35.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc--eEEECCEeCCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG--QILIDGFPIKE 568 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG--~I~idG~di~~ 568 (703)
++|+.++|+|++||||||+++.|.+.+.| .| .|.+||.++++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~~ 46 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIRQ 46 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHHH
Confidence 47999999999999999999999998876 67 77788866654
No 194
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.82 E-value=1.5e-05 Score=85.38 Aligned_cols=103 Identities=15% Similarity=0.223 Sum_probs=69.8
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHh
Q 005302 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNI 596 (703)
Q Consensus 517 vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI 596 (703)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....+.| .|++
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~V-------------------l~fS-------------- 81 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGV-------------------AVFS-------------- 81 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEE-------------------EEEE--------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeE-------------------EEEe--------------
Confidence 4555555699999999999999999999988776543322233 2221
Q ss_pred ccCCCCCCCHHHHHHH--HHHhch--HHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Q 005302 597 SYGCTQDIKQQDIEWA--AKQAYA--HDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALD 669 (703)
Q Consensus 597 ~~g~~~~~~~e~i~~a--a~~A~l--~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD 669 (703)
. +.+.+++..- +..+++ +... ...||++++||++.|...+.++++.|.|+|+.++|
T Consensus 82 ----l-Ems~~ql~~Rlls~~~~v~~~~l~------------~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 82 ----L-EMSAEQLALRALSDLTSINMHDLE------------SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ----S-SSCHHHHHHHHHHHHHCCCHHHHH------------HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ----C-CCCHHHHHHHHHHHhhCCCHHHHh------------cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 1 2344544332 122222 1111 13699999999999999999999999999876655
No 195
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.80 E-value=5.6e-06 Score=80.98 Aligned_cols=60 Identities=28% Similarity=0.503 Sum_probs=42.4
Q ss_pred EEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhc----C----CCCCcceEEECCEeCC
Q 005302 505 VSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLR----L----YEPTNGQILIDGFPIK 567 (703)
Q Consensus 505 VsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlg----l----y~p~sG~I~idG~di~ 567 (703)
.+|+|++- ..+++++|++.+++ +|+++|++|+|||||++.+.+ . ..++.+.+.++|.++.
T Consensus 5 ~~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~ 72 (198)
T 1f6b_A 5 FDWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFT 72 (198)
T ss_dssp ----------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEE
T ss_pred HHHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEE
Confidence 35778863 46999999998887 689999999999999999987 2 3345678888886553
No 196
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.77 E-value=4.1e-06 Score=95.46 Aligned_cols=81 Identities=19% Similarity=0.191 Sum_probs=51.4
Q ss_pred EEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEE
Q 005302 502 FVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFV 581 (703)
Q Consensus 502 ~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V 581 (703)
++++..+|.. ..+++++++++ +|+.+.|+||||||||||++.|.+...+..|+|.++|.+-..--....++.+|.+
T Consensus 86 ~~~vk~~i~~---~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~ 161 (543)
T 3m6a_A 86 LEKVKERILE---YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM 161 (543)
T ss_dssp CHHHHHHHHH---HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------------
T ss_pred HHHHHHHHHH---HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC
Confidence 4555556642 45788889888 8999999999999999999999999999999999988544222223345677877
Q ss_pred ccCCc
Q 005302 582 GQEPK 586 (703)
Q Consensus 582 ~Qd~~ 586 (703)
+|...
T Consensus 162 ~~~~~ 166 (543)
T 3m6a_A 162 PGRII 166 (543)
T ss_dssp --CHH
T ss_pred chHHH
Confidence 77543
No 197
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.76 E-value=1.4e-05 Score=87.34 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=38.6
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhc------------CCCCCcceEEECCEe
Q 005302 524 SVNPGEVVAIAGLSGSGKSTLVNLLLR------------LYEPTNGQILIDGFP 565 (703)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlg------------ly~p~sG~I~idG~d 565 (703)
++++|++++|||++|+|||||++.|+| ..+|++|.|.++|..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r 69 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDER 69 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcc
Confidence 578999999999999999999999999 678999999998843
No 198
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.74 E-value=2.5e-05 Score=84.01 Aligned_cols=109 Identities=22% Similarity=0.181 Sum_probs=68.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHH
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQ 607 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e 607 (703)
.-+++++|++|+|||||++.|+|.. + .+++.+....+ -.++.+.++.. .+.+.
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~-~-----~~~~~~~~t~~-----~~~~~~~~~~~--------~~~l~-------- 219 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK-P-----EIASYPFTTRG-----INVGQFEDGYF--------RYQII-------- 219 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC-C-----EEECCTTCSSC-----EEEEEEEETTE--------EEEEE--------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-C-----ccCCCCCeeec-----eeEEEEEecCc--------eEEEE--------
Confidence 3489999999999999999999865 2 12222222111 12333333211 01111
Q ss_pred HHHHHHHHhchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEe-CCCCCCCHHHHHHHHHHHHh
Q 005302 608 DIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILD-EATSALDAESEHNIKVATLS 682 (703)
Q Consensus 608 ~i~~aa~~A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILD-EaTSaLD~~tE~~I~~al~~ 682 (703)
+.|.-.+. ....+|+|++|++. |.+...++-++++| ++++++|.+....+.+.+.+
T Consensus 220 ----------------Dt~G~~~~--~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~ 276 (357)
T 2e87_A 220 ----------------DTPGLLDR--PISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG 276 (357)
T ss_dssp ----------------ECTTTSSS--CSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHH
T ss_pred ----------------eCCCcccc--chhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHH
Confidence 11211111 11358999999887 66666788889999 99999999888777777665
No 199
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.73 E-value=2.3e-06 Score=87.01 Aligned_cols=70 Identities=26% Similarity=0.246 Sum_probs=51.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHh---cCCCCCcceE--------EECCEeCCCCC-hHHhhcceEEEc------cCCcccc
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLL---RLYEPTNGQI--------LIDGFPIKEVD-IKWLRGRIGFVG------QEPKLFR 589 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLl---gly~p~sG~I--------~idG~di~~i~-~~~lR~~I~~V~------Qd~~LF~ 589 (703)
.-.++|+|||||||||+.+.|. |+.-.+.|.+ .-+|.|..+.. ...+-+.+.++. |+.+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 4589999999999999999998 6666677777 34677766543 455666666766 5666777
Q ss_pred ccHHHHhc
Q 005302 590 MDISSNIS 597 (703)
Q Consensus 590 gTI~eNI~ 597 (703)
..|.+||+
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 77777765
No 200
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.72 E-value=4.5e-06 Score=82.82 Aligned_cols=45 Identities=31% Similarity=0.335 Sum_probs=40.2
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc--eEEECCEeCC
Q 005302 523 ISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG--QILIDGFPIK 567 (703)
Q Consensus 523 l~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG--~I~idG~di~ 567 (703)
+.+++|..++|+|++||||||+++.|.+.+.|+.| .+.+||.+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 45789999999999999999999999999998899 9999875553
No 201
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.71 E-value=1.6e-05 Score=88.16 Aligned_cols=61 Identities=31% Similarity=0.364 Sum_probs=41.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCC------------CCcceEEECCEeCCCCChHHhhcceEEEccCCcccc
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLYE------------PTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFR 589 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly~------------p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~ 589 (703)
-++||||+||+|||||++.|+|... |.+|.+.+||.++.-+|..-.|+..++.+|+...|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 4799999999999999999999853 788999999998766666666666666667666554
No 202
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.70 E-value=7.5e-06 Score=79.85 Aligned_cols=34 Identities=35% Similarity=0.436 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeC
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI 566 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di 566 (703)
...|+|+|++||||||+.+.|... |-..+|.-++
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~~ 41 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDAL 41 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccHH
Confidence 357999999999999999999996 7777776443
No 203
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.69 E-value=1.3e-05 Score=76.24 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF 564 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~ 564 (703)
.|+.++|+|+|||||||++++|.+.+.+ +.+|+-
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~d 36 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDSD 36 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEecc
Confidence 4789999999999999999999998754 677753
No 204
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.69 E-value=1.9e-05 Score=83.11 Aligned_cols=123 Identities=19% Similarity=0.179 Sum_probs=66.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEE-CCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILI-DGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDI 604 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~i-dG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~ 604 (703)
.++.+|||+|++|+|||||++.|+|.- +.+ .+.+-. ..++..+++.|++. .+.+.|.+..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~--------~i~~iDTpG~ 66 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAY--------QAIYVDTPGL 66 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTE--------EEEEESSSSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCe--------eEEEEECcCC
Confidence 345589999999999999999999963 222 121211 12445678887653 2444433233
Q ss_pred CHHHHHHHHHHhchH-HHHHcCCCCcc---cc---cCCCCCChHHHHHHHHHHHhc--CCCCEEEEeCCCCCCCHHH-HH
Q 005302 605 KQQDIEWAAKQAYAH-DFIMSLPSGYE---TL---VDDDLLSGGQKQRIAIARAIL--RDPTILILDEATSALDAES-EH 674 (703)
Q Consensus 605 ~~e~i~~aa~~A~l~-d~I~~LP~Gyd---T~---vGe~~LSGGQkQRIaLARAL~--r~p~ILILDEaTSaLD~~t-E~ 674 (703)
.. +-... +. ++.......++ .. +....+|+|++ .+++++- +.|.|+++ +.+|... ..
T Consensus 67 ~~-~~~~~-----l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~ 133 (301)
T 1ega_A 67 HM-EEKRA-----INRLMNKAASSSIGDVELVIFVVEGTRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKA 133 (301)
T ss_dssp CH-HHHHH-----HHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHH
T ss_pred Cc-cchhh-----HHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHH
Confidence 21 11111 11 22212222221 11 11124999886 5667666 78999998 5677654 33
Q ss_pred HHHHHH
Q 005302 675 NIKVAT 680 (703)
Q Consensus 675 ~I~~al 680 (703)
.+.+.+
T Consensus 134 ~~~~~l 139 (301)
T 1ega_A 134 DLLPHL 139 (301)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 343333
No 205
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=97.68 E-value=2.2e-06 Score=81.33 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=44.5
Q ss_pred CCCcccceeeeecCcEEEeCCCCCCCCc--ceeechhHHHHHHHHHHHHhcCCCC
Q 005302 95 RCCHFHPLKSSSINGFSVQNDSLEHFDG--EVNVDFNEKIRRWIRFIQSILPGGS 147 (703)
Q Consensus 95 ~~nhfvvl~~v~~~~~~i~dp~~~~a~g--~r~~~~~e~~~~ftg~alel~p~~~ 147 (703)
+++|||||.++.++++.|+|| +.| +++++.+|+.+.|+|+++.+.|+..
T Consensus 93 ~~~hfvVl~~~~~~~v~I~DP----~~g~~~~~ls~~ef~~~w~G~~l~~~p~~~ 143 (156)
T 3k8u_A 93 RLQHYYVVYGSQNNQLIIGDP----DPSVKVTRMSKERFQSEWTGLAIFLAPQPN 143 (156)
T ss_dssp EEEEEEEEEEEETTEEEEEEC----STTTEEEEEEHHHHHHHEEEEEEEEEEC--
T ss_pred CCcEEEEEEEEcCCEEEEEcC----CCCcceEEEcHHHHHhhCceEEEEEEcCcc
Confidence 368999999999999999999 888 8999999999999999999999875
No 206
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.68 E-value=5.5e-05 Score=83.56 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=37.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK 567 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~ 567 (703)
++..++++|++||||||++.-|++.+.+..++|.+-+.|..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 57899999999999999999999999999999999777754
No 207
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.67 E-value=6.8e-06 Score=88.05 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=48.1
Q ss_pred cccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC
Q 005302 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE 568 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~ 568 (703)
..+++++++++++|..++|+|++|+||||+++.|++.+.+..|+|.+-+.|...
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 358899999999999999999999999999999999999989999887777643
No 208
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.65 E-value=1.1e-05 Score=85.66 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=25.5
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcC
Q 005302 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl 551 (703)
-+++|+.+.|.||+|||||||+.-++.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5899999999999999999999888764
No 209
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.61 E-value=1.4e-05 Score=80.76 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=33.5
Q ss_pred ceeeeEEec---CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECC
Q 005302 518 LQHVNISVN---PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG 563 (703)
Q Consensus 518 L~~isl~I~---~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG 563 (703)
|.+.|++++ +|..++|.|++||||||+++.|...+.+ .+++....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 455555554 8999999999999999999999999988 77776543
No 210
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.58 E-value=9.1e-06 Score=80.10 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=38.3
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CcceE----------EECCEeCCCCChHHhhcc
Q 005302 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-TNGQI----------LIDGFPIKEVDIKWLRGR 577 (703)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p-~sG~I----------~idG~di~~i~~~~lR~~ 577 (703)
...+|..++|+|||||||||+++.|...++. ..+.+ .+||.+..-++.+.+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~ 72 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERK 72 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHH
Confidence 4578999999999999999999999987742 11111 236666666666666543
No 211
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.56 E-value=5.4e-06 Score=75.64 Aligned_cols=47 Identities=6% Similarity=-0.075 Sum_probs=42.6
Q ss_pred CCcccceeeeecC--cEEEeCCCCCCC--CcceeechhHHHHHHHHHHHHhcCCC
Q 005302 96 CCHFHPLKSSSIN--GFSVQNDSLEHF--DGEVNVDFNEKIRRWIRFIQSILPGG 146 (703)
Q Consensus 96 ~nhfvvl~~v~~~--~~~i~dp~~~~a--~g~r~~~~~e~~~~ftg~alel~p~~ 146 (703)
.+|||||.++.++ ++.|+|| + .|+++++.+|+.+.|+|+++.++|+.
T Consensus 78 ~~h~vVl~~~~~~~~~~~i~dp----~~~~g~~~~~~~ef~~~w~G~~l~~~~~~ 128 (129)
T 3b79_A 78 GGDSCVLNSINMETREAEVTTL----ESGMVPISIPLEDLLEQYTGRYFLVKKQF 128 (129)
T ss_dssp GGEEEEEEEEETTTTEEEEECT----TTTTSCEEEEHHHHHHHEEEEEEEEEEC-
T ss_pred CCCEEEEEEEcCCCceEEEEcc----CCCCCcEEeeHHHHHhhCCEEEEEEeccC
Confidence 3699999999998 8999999 8 89999999999999999999888853
No 212
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.54 E-value=5.4e-05 Score=73.32 Aligned_cols=51 Identities=25% Similarity=0.444 Sum_probs=31.0
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhc----CC----CCCcceEEECCEeCC
Q 005302 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLR----LY----EPTNGQILIDGFPIK 567 (703)
Q Consensus 516 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlg----ly----~p~sG~I~idG~di~ 567 (703)
.+++++|++.++. +|+++|++|+|||||++.+.+ .+ .++.+++.++|..+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~ 70 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFT 70 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEE
Confidence 3788999998877 889999999999999999998 33 344577788886543
No 213
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.53 E-value=3.5e-06 Score=82.15 Aligned_cols=70 Identities=19% Similarity=0.240 Sum_probs=40.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc------CCCCCcceEEECCE--eCCCCC--------hHHhhcceEEEccCCccccccHH
Q 005302 530 VVAIAGLSGSGKSTLVNLLLR------LYEPTNGQILIDGF--PIKEVD--------IKWLRGRIGFVGQEPKLFRMDIS 593 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg------ly~p~sG~I~idG~--di~~i~--------~~~lR~~I~~V~Qd~~LF~gTI~ 593 (703)
.++|+|++||||||+++.|.. +.+|..|...++.. +-...+ .+.+++....+.|+..++++++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 689999999999999999998 34554443322211 100000 01123334567788899999999
Q ss_pred HHhccC
Q 005302 594 SNISYG 599 (703)
Q Consensus 594 eNI~~g 599 (703)
+|+.+.
T Consensus 82 ~~~~~~ 87 (205)
T 2jaq_A 82 EDPIFM 87 (205)
T ss_dssp THHHHH
T ss_pred hhHHHH
Confidence 888764
No 214
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.49 E-value=2.5e-05 Score=83.95 Aligned_cols=43 Identities=16% Similarity=0.252 Sum_probs=38.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE 568 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~ 568 (703)
++|..|+|+|++|||||||++.|+|.+.|++|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 4678999999999999999999999999999999998887654
No 215
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.49 E-value=6.8e-05 Score=71.50 Aligned_cols=41 Identities=39% Similarity=0.544 Sum_probs=31.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCC------------CcceEEECCEeC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEP------------TNGQILIDGFPI 566 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p------------~sG~I~idG~di 566 (703)
++|.+|+|+|++|+|||||++.++|...+ ..+.+.+||.++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 54 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPL 54 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEE
Confidence 47899999999999999999999986421 235677777543
No 216
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.47 E-value=0.00018 Score=74.64 Aligned_cols=32 Identities=31% Similarity=0.410 Sum_probs=27.5
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCCCCCCCH
Q 005302 639 SGGQKQRIAIARAILRDPTILILDEATSALDA 670 (703)
Q Consensus 639 SGGQkQRIaLARAL~r~p~ILILDEaTSaLD~ 670 (703)
++++++|-.+++|...+|.+|++||+.+-++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 46888898999999899999999999877654
No 217
>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}
Probab=97.42 E-value=1.7e-05 Score=73.88 Aligned_cols=49 Identities=18% Similarity=0.040 Sum_probs=43.5
Q ss_pred CCCCcccceeeeec--CcEEEeCCCCCCCCc-ceeechhHHHHHHHHHHHHhcCCCC
Q 005302 94 KRCCHFHPLKSSSI--NGFSVQNDSLEHFDG-EVNVDFNEKIRRWIRFIQSILPGGS 147 (703)
Q Consensus 94 ~~~nhfvvl~~v~~--~~~~i~dp~~~~a~g-~r~~~~~e~~~~ftg~alel~p~~~ 147 (703)
+|.+||||++ +.+ +++.|+|| +.| +++++.+|+.+.|+|+++.+.|+..
T Consensus 84 ~~g~~~Vv~~-~~~~~~~~~I~dP----~~g~~~~~s~~ef~~~w~G~~l~~~~~~~ 135 (142)
T 3zua_A 84 EDGRHFILTK-VSKEANRYLIFDL----EQRNPRVLEQSEFEALYQGHIILIASRSS 135 (142)
T ss_dssp TTSCCEEEEE-EETTTTEEEEEET----TTTEEEEEEHHHHHHHCCSEEEEEEESSC
T ss_pred cCCCEEEEEE-EeCCCCEEEEEcC----CCCCcEEecHHHHHhhCCCEEEEEEECCc
Confidence 4568999976 776 67999999 988 8999999999999999999999875
No 218
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.34 E-value=8.4e-06 Score=86.88 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=54.6
Q ss_pred cccceeeeEEecCCcE--EEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC-CChHHhhcceEEEccC
Q 005302 515 VPVLQHVNISVNPGEV--VAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE-VDIKWLRGRIGFVGQE 584 (703)
Q Consensus 515 ~~vL~~isl~I~~Ge~--vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~-i~~~~lR~~I~~V~Qd 584 (703)
..+++.++..|+.|+. +.+.||+|+||||+++.+++...++.|.+.+.+.+..+ .+.+..|+.+..+.|.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~ 103 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAST 103 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHB
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhh
Confidence 4689999999999998 99999999999999999999988887766665555543 3456666665544443
No 219
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.33 E-value=6.4e-05 Score=79.56 Aligned_cols=108 Identities=11% Similarity=0.134 Sum_probs=68.0
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHH
Q 005302 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSN 595 (703)
Q Consensus 516 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eN 595 (703)
+-|+++.--+++|+.+.|.|++|+|||||+.-++.-.-- .| ..+
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~v----------------- 99 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVV----------------- 99 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEE-----------------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeE-----------------
Confidence 457777656999999999999999999998877643210 00 112
Q ss_pred hccCCCCCCCHHHHHHHHHH--hchHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Q 005302 596 ISYGCTQDIKQQDIEWAAKQ--AYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALD 669 (703)
Q Consensus 596 I~~g~~~~~~~e~i~~aa~~--A~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL~r~p~ILILDEaTSaLD 669 (703)
.|+.- +.+.+++.+=+.. ++++- .++-.| ...||++++||+..|-..+.++++.+.|+|+..+|
T Consensus 100 -l~~sl-E~s~~~l~~R~~~~~~~i~~--~~l~~~------~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~ 165 (315)
T 3bh0_A 100 -NLHSL-EMGKKENIKRLIVTAGSINA--QKIKAA------RRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVN 165 (315)
T ss_dssp -EEEES-SSCHHHHHHHHHHHHTTCCH--HHHHSC------HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHH
T ss_pred -EEEEC-CCCHHHHHHHHHHHHcCCCH--HHHhcC------CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHH
Confidence 23322 3445555432221 12110 000011 01289999999999999998999999999875544
No 220
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.31 E-value=4e-05 Score=80.64 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=50.2
Q ss_pred EEEEEEEcCCCCCccccee-eeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC
Q 005302 502 FVDVSFRYSSREMVPVLQH-VNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV 569 (703)
Q Consensus 502 ~~nVsF~Y~~~~~~~vL~~-isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i 569 (703)
.++++..|++. . ++ +|++.+ |+.++++|++|+||||++..|++.+.+..|+|.+.+.|...-
T Consensus 77 ~~~l~~~~~~~--~---~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 77 YDELSNLFGGD--K---EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp HHHHHHHTTCS--C---CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred HHHHHHHhccc--c---ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 34455556532 1 45 788877 999999999999999999999999999999999988887653
No 221
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.28 E-value=7.7e-05 Score=80.37 Aligned_cols=57 Identities=23% Similarity=0.233 Sum_probs=45.4
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceE-EECCEeCCCCChHHhhcceEEEccC
Q 005302 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI-LIDGFPIKEVDIKWLRGRIGFVGQE 584 (703)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I-~idG~di~~i~~~~lR~~I~~V~Qd 584 (703)
+++|+.+.|.||+|||||||+..+++...+..|.+ ++|+.+..+ ..+.+++|+.+|+
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~ 115 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKS 115 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGG
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhh
Confidence 89999999999999999999999999998888865 777654332 2355667777654
No 222
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.28 E-value=0.0013 Score=66.08 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=24.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcce
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLYEPTNGQ 558 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly~p~sG~ 558 (703)
+|+|+|++|+|||||++.|+|-..+.+|.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 68999999999999999999987766653
No 223
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.24 E-value=0.00067 Score=72.53 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=26.9
Q ss_pred cCCc--EEEEEcCCCCcHHHHHHHHhcCCCCCc
Q 005302 526 NPGE--VVAIAGLSGSGKSTLVNLLLRLYEPTN 556 (703)
Q Consensus 526 ~~Ge--~vAIVG~SGsGKSTLlkLLlgly~p~s 556 (703)
++|. .+.|+||+|+||||+++.+.+...+..
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~ 72 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT 72 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc
Confidence 3456 899999999999999999999887753
No 224
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.21 E-value=0.00014 Score=70.27 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=26.8
Q ss_pred eeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC
Q 005302 520 HVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 520 ~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl 551 (703)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 47889999999999999999999999999876
No 225
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.18 E-value=0.00015 Score=72.92 Aligned_cols=124 Identities=17% Similarity=0.225 Sum_probs=69.5
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCcc-ccccHHHHhccCCCC
Q 005302 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKL-FRMDISSNISYGCTQ 602 (703)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~L-F~gTI~eNI~~g~~~ 602 (703)
.+.+|+.++++||+||||||++.+.+.-.....|. ...++++.|.|.. ..-++.+|+.-....
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 35679999999999999999888764322111111 1345667776654 334566666432110
Q ss_pred CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCC---------CCChHHHHHHHHHHHhcCCCCEEEEeCCCC-CCCHHH
Q 005302 603 DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD---------LLSGGQKQRIAIARAILRDPTILILDEATS-ALDAES 672 (703)
Q Consensus 603 ~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~---------~LSGGQkQRIaLARAL~r~p~ILILDEaTS-aLD~~t 672 (703)
... ..-||....... --..|+-.+.. ++-+++-+++|+|||-. ++|.+.
T Consensus 136 ~~~-------------------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~ 194 (235)
T 3llm_A 136 EPG-------------------KSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDF 194 (235)
T ss_dssp CTT-------------------SSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHH
T ss_pred ccC-------------------ceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHH
Confidence 100 011221111000 12456666654 44689999999999976 477766
Q ss_pred HH-HHHHHHHhCC
Q 005302 673 EH-NIKVATLSNG 684 (703)
Q Consensus 673 E~-~I~~al~~~~ 684 (703)
.. .+.+.+...+
T Consensus 195 ~~~~l~~i~~~~~ 207 (235)
T 3llm_A 195 LLVVLRDVVQAYP 207 (235)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHhhCC
Confidence 63 3344444333
No 226
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.17 E-value=0.00012 Score=78.49 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=25.8
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcC
Q 005302 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl 551 (703)
-+++|+.+.|.||+|||||||+.-++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999999988874
No 227
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.17 E-value=0.00011 Score=70.92 Aligned_cols=42 Identities=33% Similarity=0.506 Sum_probs=35.4
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceE-EECCEe
Q 005302 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI-LIDGFP 565 (703)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I-~idG~d 565 (703)
..++|..++|+|++||||||+++.|.+.+.+..|.+ .+|+.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 456899999999999999999999999998877776 566533
No 228
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.13 E-value=0.00017 Score=70.74 Aligned_cols=31 Identities=42% Similarity=0.613 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEe
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFP 565 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~d 565 (703)
.++|+|++||||||+.+.|.++ |...+|+-+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~ 34 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADV 34 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHH
Confidence 6899999999999999999993 666776533
No 229
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.07 E-value=0.00013 Score=71.40 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeC
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI 566 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di 566 (703)
...++|+|++||||||+++.|.+.+ |.+.+|+-++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 5689999999999999999999876 5667776554
No 230
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.07 E-value=0.00013 Score=74.40 Aligned_cols=42 Identities=24% Similarity=0.462 Sum_probs=34.9
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC
Q 005302 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK 567 (703)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~ 567 (703)
..++|..+.|+|++||||||+.+.|.+.+. .|.+.+||-.++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 466788999999999999999999999875 367888885553
No 231
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.07 E-value=0.00047 Score=64.86 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly 552 (703)
-+++|+|++|+|||||++.+.|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999964
No 232
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.06 E-value=5.1e-05 Score=81.97 Aligned_cols=59 Identities=24% Similarity=0.236 Sum_probs=37.3
Q ss_pred CCcEEEEEEEEEcCCCCCcccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE
Q 005302 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF 564 (703)
Q Consensus 497 ~g~I~~~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~ 564 (703)
.+.|.++|++..|.. ..++++++|+| +|||++|+|||||++.|.|.-.+..|.+..++.
T Consensus 15 ~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~ 73 (361)
T 2qag_A 15 PGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAAE 73 (361)
T ss_dssp ------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----------
T ss_pred CceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCc
Confidence 467999999988863 46889999977 999999999999999999887666666544443
No 233
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.04 E-value=0.00026 Score=71.94 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=34.5
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC
Q 005302 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE 568 (703)
Q Consensus 517 vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~ 568 (703)
.++++++.+++| +.|+||+|+||||+++.+.+.+... -+.+++.++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~~ 83 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVE 83 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSSTT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHHH
Confidence 456666666665 9999999999999999999987532 47888877654
No 234
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.02 E-value=6.1e-05 Score=89.70 Aligned_cols=61 Identities=20% Similarity=0.178 Sum_probs=49.1
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCC
Q 005302 523 ISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEP 585 (703)
Q Consensus 523 l~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~ 585 (703)
+.+++|+.+.|+||||||||||++.|++.+.+. -|.+||.++.........+.++.+.|++
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~~~l~~~~~g~~~~~l~~vf~~a 293 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESESNLRKAFEEA 293 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEHHHHSSSSTTHHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEchHhhhhhhhhHHHHHHHHHHHH
Confidence 468999999999999999999999999998654 4888988776555555566666777765
No 235
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.02 E-value=0.00034 Score=66.76 Aligned_cols=37 Identities=30% Similarity=0.346 Sum_probs=28.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC-----------CCCCcceEEECCEe
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRL-----------YEPTNGQILIDGFP 565 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl-----------y~p~sG~I~idG~d 565 (703)
-+++++|++|+|||||++.++|- .++..|.+.++|..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 55 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK 55 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcE
Confidence 37999999999999999999984 23445666666543
No 236
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.02 E-value=0.00023 Score=68.92 Aligned_cols=39 Identities=28% Similarity=0.332 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCC---cceEEECCEeC
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRLYEPT---NGQILIDGFPI 566 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgly~p~---sG~I~idG~di 566 (703)
-..++|+|+||||||||++.|++.+.+. -|.|..++.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~ 47 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDM 47 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCcc
Confidence 3689999999999999999999987654 37888877553
No 237
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.00 E-value=0.00017 Score=70.56 Aligned_cols=46 Identities=35% Similarity=0.597 Sum_probs=36.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC-------------CCCcceEEECCEeCCCCChHHhhcce
Q 005302 531 VAIAGLSGSGKSTLVNLLLRLY-------------EPTNGQILIDGFPIKEVDIKWLRGRI 578 (703)
Q Consensus 531 vAIVG~SGsGKSTLlkLLlgly-------------~p~sG~I~idG~di~~i~~~~lR~~I 578 (703)
+.|+||||||||||++-|+.-+ +|-.|++ ||+|..-++.+.+.+.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~i 62 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI 62 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHHH
Confidence 7899999999999999886433 4566774 89999888888876654
No 238
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.00 E-value=0.00029 Score=76.82 Aligned_cols=41 Identities=24% Similarity=0.406 Sum_probs=35.5
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcC-----------CCCCcceEEECCE
Q 005302 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRL-----------YEPTNGQILIDGF 564 (703)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl-----------y~p~sG~I~idG~ 564 (703)
.++.|.+++|||++|+|||||++.|.|. .+|+.|.|.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 5678999999999999999999999998 7899999988764
No 239
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.99 E-value=0.0003 Score=74.87 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=27.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG 557 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG 557 (703)
++|..+.|+||+|+|||||++.+.+...+..|
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~ 74 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFL 74 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999998866443
No 240
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.95 E-value=0.00067 Score=72.38 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=32.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI 566 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di 566 (703)
.+|..+.|.||+|+||||+++.+.........-+.+++..+
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 108 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhh
Confidence 45778999999999999999999988865445566655443
No 241
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.94 E-value=0.00046 Score=64.84 Aligned_cols=29 Identities=34% Similarity=0.612 Sum_probs=23.4
Q ss_pred eeeEEecCCcEEEEEcCCCCcHHHHHHHHh
Q 005302 520 HVNISVNPGEVVAIAGLSGSGKSTLVNLLL 549 (703)
Q Consensus 520 ~isl~I~~Ge~vAIVG~SGsGKSTLlkLLl 549 (703)
+..+++.+| ..+|+||+||||||++..|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344555554 89999999999999999886
No 242
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.91 E-value=0.00053 Score=72.18 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPT 555 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly~p~ 555 (703)
++..+.|.||+|+|||||++.+.+...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 45689999999999999999999877544
No 243
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.90 E-value=0.00048 Score=67.22 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+++|+|++||||||+++.|.++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999993
No 244
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.88 E-value=0.0024 Score=60.43 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=24.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEEC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILID 562 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~id 562 (703)
..+.|+|++||||||+.+.|... .-|-..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCCcEEec
Confidence 46899999999999999999872 12555554
No 245
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.88 E-value=0.00046 Score=66.15 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLYEPT 555 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly~p~ 555 (703)
+|+|+|++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 69999999999999999999975443
No 246
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.84 E-value=0.00097 Score=64.08 Aligned_cols=37 Identities=41% Similarity=0.568 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHH-HHhcC----CCCCcc----eEEECCEeC
Q 005302 530 VVAIAGLSGSGKSTLVN-LLLRL----YEPTNG----QILIDGFPI 566 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlk-LLlgl----y~p~sG----~I~idG~di 566 (703)
+|+|+|++|+|||||++ ++.+- +.|+.| .+.++|..+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence 69999999999999996 44554 778877 788888654
No 247
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.74 E-value=0.00093 Score=73.95 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+..+.|.||+|+|||||++.+.+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999765
No 248
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.74 E-value=0.00064 Score=73.79 Aligned_cols=56 Identities=18% Similarity=0.122 Sum_probs=41.7
Q ss_pred EEEEcCCCCCcccceeeeEEec---CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEEC
Q 005302 505 VSFRYSSREMVPVLQHVNISVN---PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILID 562 (703)
Q Consensus 505 VsF~Y~~~~~~~vL~~isl~I~---~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~id 562 (703)
+.+.+... ..+++-|. +... .+..++|+|+|||||||++|.|++.+.+..+.|.+-
T Consensus 11 ~~~G~~~~-g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 11 IVLGKDRD-GGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp EEEEECTT-SCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEeCC-CCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 34555433 34566555 2222 678899999999999999999999888888888774
No 249
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.68 E-value=0.00042 Score=75.02 Aligned_cols=59 Identities=24% Similarity=0.275 Sum_probs=43.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCccccccHHHHhccCCCCCCCHHHH
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDI 609 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i 609 (703)
+++|||++|+|||||++.|+|.. + ++.+++.. |+..|+... ..+++++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~~------------------Ti~pn~g~~---~v~~~~l 50 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPFA------------------TIDKNVGVV---PLEDERL 50 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCGG------------------GGSTTEEEE---ECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCCc------------------eeccceeeE---ecChHHH
Confidence 48999999999999999999974 3 12222221 677777665 3456888
Q ss_pred HHHHHHhchHH
Q 005302 610 EWAAKQAYAHD 620 (703)
Q Consensus 610 ~~aa~~A~l~d 620 (703)
..+++.++.++
T Consensus 51 ~~~~~~~~~~~ 61 (368)
T 2dby_A 51 YALQRTFAKGE 61 (368)
T ss_dssp HHHHHHHCBTT
T ss_pred HHHHHHhcccc
Confidence 88888888654
No 250
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.67 E-value=0.00092 Score=63.54 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly~ 553 (703)
.|..+.|+|+|||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998764
No 251
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.67 E-value=0.00027 Score=69.38 Aligned_cols=87 Identities=23% Similarity=0.327 Sum_probs=51.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCChHHhhcceEEEccCCc----cccccHHHHhc--cCC-CC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPK----LFRMDISSNIS--YGC-TQ 602 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~i~~~~lR~~I~~V~Qd~~----LF~gTI~eNI~--~g~-~~ 602 (703)
.++|+|++||||||+++.|.+.+.+....+.+ + ++|. ++..++++.+. ++. +.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~-------------------~-~~~~~~~~~~~~~~r~~~~~~~~~~~~ 61 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT-------------------L-AFPRYGQSVAADIAAEALHGEHGDLAS 61 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE-------------------E-ESSEEEEEEEEEEHHHHEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE-------------------E-eecCCCCcchhhHHHHHHcccccccCC
Confidence 68999999999999999999988754333321 1 1111 11334444442 110 00
Q ss_pred CCCHHHHHHHHHHhchHHHHHcCCCCcccccCCC
Q 005302 603 DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD 636 (703)
Q Consensus 603 ~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe~ 636 (703)
+...+.+..++..++..+.|..++.+.++.|.|.
T Consensus 62 ~~~~~~~~~~~~r~~~~~~i~~~l~~g~~vi~D~ 95 (214)
T 1gtv_A 62 SVYAMATLFALDRAGAVHTIQGLCRGYDVVILDR 95 (214)
T ss_dssp EHHHHHHHHHHHHHEEHHHHHHEEEEEEEEEEEE
T ss_pred CHhHHHHHHHHHHhhhHHHHHHHhhCCCEEEECC
Confidence 1223444444555555777887776778888774
No 252
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.64 E-value=0.00079 Score=64.49 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998543
No 253
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.63 E-value=0.00035 Score=74.99 Aligned_cols=37 Identities=32% Similarity=0.436 Sum_probs=33.9
Q ss_pred ccceeeeEEecCCcE--EEEEcCCCCcHHHHHHHHhcCC
Q 005302 516 PVLQHVNISVNPGEV--VAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 516 ~vL~~isl~I~~Ge~--vAIVG~SGsGKSTLlkLLlgly 552 (703)
.+++++++.+++|+. ++|+|++||||||+.+.|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478899999999999 9999999999999999998864
No 254
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.58 E-value=0.001 Score=63.52 Aligned_cols=39 Identities=31% Similarity=0.541 Sum_probs=31.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC----CCCCcc----eEEECCEeC
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRL----YEPTNG----QILIDGFPI 566 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl----y~p~sG----~I~idG~di 566 (703)
.=+++++|++|+|||||++.+.+- +.|+.| .+.+++..+
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l 62 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKL 62 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEE
Confidence 347999999999999999999986 467777 566666544
No 255
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.57 E-value=0.0017 Score=71.75 Aligned_cols=127 Identities=18% Similarity=0.207 Sum_probs=69.8
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-eEE-ECCEeCCCCChHHhhcce----EEEccCCccccc
Q 005302 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG-QIL-IDGFPIKEVDIKWLRGRI----GFVGQEPKLFRM 590 (703)
Q Consensus 517 vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG-~I~-idG~di~~i~~~~lR~~I----~~V~Qd~~LF~g 590 (703)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....| .|. +.. +.+.+.+..++ +-|+.+.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl----E~~~~~l~~R~~~~~~~i~~~~----- 259 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL----EMPAAQLTLRMMCSEARIDMNR----- 259 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES----SSCHHHHHHHHHHHHTTCCTTT-----
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC----CCCHHHHHHHHHHHHcCCCHHH-----
Confidence 46666545899999999999999999999887765543223 233 322 23444444332 1111111
Q ss_pred cHHHHhccCCCCCCCHHHHHHHHHHhchHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHhc--CCCCEEEEeCCCCC
Q 005302 591 DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD-DLLSGGQKQRIAIARAIL--RDPTILILDEATSA 667 (703)
Q Consensus 591 TI~eNI~~g~~~~~~~e~i~~aa~~A~l~d~I~~LP~GydT~vGe-~~LSGGQkQRIaLARAL~--r~p~ILILDEaTSa 667 (703)
+.-| ..++++.....+.+ +.+...| -.+-+ ..+|..+- .+.+|.+. ++|+++|+|..+.-
T Consensus 260 -----l~~g---~l~~~~~~~~~~a~---~~l~~~~----l~i~d~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~ 322 (444)
T 2q6t_A 260 -----VRLG---QLTDRDFSRLVDVA---SRLSEAP----IYIDDTPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLM 322 (444)
T ss_dssp -----CCGG---GCCHHHHHHHHHHH---HHHHTSC----EEEECCTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGC
T ss_pred -----HhCC---CCCHHHHHHHHHHH---HHHhcCC----EEEECCCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhc
Confidence 1111 23444443333222 2233322 22222 35666553 45666665 47999999998765
Q ss_pred CC
Q 005302 668 LD 669 (703)
Q Consensus 668 LD 669 (703)
.+
T Consensus 323 ~~ 324 (444)
T 2q6t_A 323 SG 324 (444)
T ss_dssp BC
T ss_pred CC
Confidence 54
No 256
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.56 E-value=0.001 Score=62.48 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.++|+|++||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
No 257
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.51 E-value=0.0012 Score=69.70 Aligned_cols=47 Identities=34% Similarity=0.282 Sum_probs=36.6
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhc----CCCCCcceEEECC
Q 005302 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLR----LYEPTNGQILIDG 563 (703)
Q Consensus 516 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlg----ly~p~sG~I~idG 563 (703)
..+++..+++ .|.-++|+|+||+||||++..|.+ +...+...|...|
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 4678888888 899999999999999999998887 5444444554433
No 258
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.48 E-value=0.0026 Score=65.29 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=25.1
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
++++..+.|.||+|+||||+++.+++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4677889999999999999999998865
No 259
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.48 E-value=0.0021 Score=71.24 Aligned_cols=44 Identities=7% Similarity=-0.022 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 005302 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKVATLSN 683 (703)
Q Consensus 640 GGQkQRIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~ 683 (703)
+.|++-...++..+++++++|+......-....+..+.+.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~ 130 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRT 130 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHc
Confidence 35788888888888888877775544433333445566666653
No 260
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.47 E-value=0.0014 Score=62.78 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
++..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999997654
No 261
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.46 E-value=0.0014 Score=62.60 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998754
No 262
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.45 E-value=0.0017 Score=64.16 Aligned_cols=32 Identities=44% Similarity=0.541 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG 563 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG 563 (703)
++-.|+|+|++||||||+++.|.++ |...+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 4568999999999999999999983 5566654
No 263
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.42 E-value=0.0015 Score=65.60 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.5
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhc
Q 005302 525 VNPGEVVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlg 550 (703)
=++|..++|+|++||||||+.+.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999999986
No 264
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.40 E-value=0.0018 Score=62.83 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=25.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999887
No 265
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.39 E-value=0.0016 Score=62.57 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=24.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
++|..+.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 567899999999999999999998754
No 266
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.39 E-value=0.0017 Score=67.71 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=29.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG 563 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG 563 (703)
++|..+.|+|||||||||+++.|..-++ .|.+.|++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3467899999999999999999987553 36677776
No 267
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.37 E-value=0.0035 Score=64.42 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhCCcEEEEecchhH
Q 005302 645 RIAIARAILRDPTILILDEATSALDAESEHNIKVATLSNGLLVKSLHFLSL 695 (703)
Q Consensus 645 RIaLARAL~r~p~ILILDEaTSaLD~~tE~~I~~al~~~~~~~~~~~~~~~ 695 (703)
|++|||||..+|+++++|||| |+++...+.++...-..++-..|-.+.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETALRAAETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHHHTTCEEEEEECCSSH
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHHccCCEEEEEeCcchH
Confidence 899999999999999999999 999877766666655566777887664
No 268
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.32 E-value=0.0012 Score=63.00 Aligned_cols=27 Identities=26% Similarity=0.201 Sum_probs=23.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.++..+.|+|++||||||+.+.|...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999998544
No 269
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.31 E-value=0.0012 Score=63.59 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=27.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCc---ceEEECCE
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLYEPTN---GQILIDGF 564 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly~p~s---G~I~idG~ 564 (703)
..++|+|+||||||||++-|.+.+.+.. |.|..|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4789999999999999999998876432 55555543
No 270
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.30 E-value=0.0018 Score=60.51 Aligned_cols=19 Identities=53% Similarity=0.899 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 005302 530 VVAIAGLSGSGKSTLVNLL 548 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLL 548 (703)
.++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 271
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.28 E-value=0.0023 Score=63.17 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=22.9
Q ss_pred eeeEEecCCcEEEEEcCCCCcHHHHHHHHh
Q 005302 520 HVNISVNPGEVVAIAGLSGSGKSTLVNLLL 549 (703)
Q Consensus 520 ~isl~I~~Ge~vAIVG~SGsGKSTLlkLLl 549 (703)
+.++++.+ ...+|+||+||||||++..|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 34455555 489999999999999999774
No 272
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.27 E-value=0.0028 Score=68.26 Aligned_cols=36 Identities=39% Similarity=0.562 Sum_probs=31.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc-----------CCCCCcceEEECC
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLR-----------LYEPTNGQILIDG 563 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlg-----------ly~p~sG~I~idG 563 (703)
|-+++|||.+|+|||||++.|+| -.+|+.|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999999 4578889888876
No 273
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.26 E-value=0.00067 Score=71.68 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=30.7
Q ss_pred ccceeeeEEecCC--cEEEEEcCCCCcHHHHHHHHhcCCC
Q 005302 516 PVLQHVNISVNPG--EVVAIAGLSGSGKSTLVNLLLRLYE 553 (703)
Q Consensus 516 ~vL~~isl~I~~G--e~vAIVG~SGsGKSTLlkLLlgly~ 553 (703)
.+++.+.-.+..| ..+.|.||+|+||||+++.+.+.+.
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4566666666666 4599999999999999999999864
No 274
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.24 E-value=0.0023 Score=61.51 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=24.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
++|..++|+|++||||||+.+.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999998655
No 275
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.21 E-value=0.0024 Score=62.28 Aligned_cols=28 Identities=36% Similarity=0.546 Sum_probs=24.5
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.++|..|+|+|++||||||+.+.|...+
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999998643
No 276
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.15 E-value=0.0014 Score=68.52 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=32.4
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE
Q 005302 523 ISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF 564 (703)
Q Consensus 523 l~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~ 564 (703)
+.++++..+.|.||+||||||+++.+.+... .+-+.+++.
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~ 83 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGP 83 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhH
Confidence 4578999999999999999999999998764 455555543
No 277
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.15 E-value=0.0027 Score=62.01 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.8
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcC
Q 005302 525 VNPGEVVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgl 551 (703)
.++|..|+|+|++||||||+.+.|...
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999999854
No 278
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.10 E-value=0.0029 Score=61.57 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEE
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQIL 560 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~ 560 (703)
+|..|+|.|++||||||+++.|..-+... |.+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~~ 35 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELK-RDVY 35 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTT-SCEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhc-CCEE
Confidence 57889999999999999999998876543 3443
No 279
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.10 E-value=0.0053 Score=57.52 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999875
No 280
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.04 E-value=2.9 Score=47.58 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=5.8
Q ss_pred EEEEEEEEcCC
Q 005302 501 DFVDVSFRYSS 511 (703)
Q Consensus 501 ~~~nVsF~Y~~ 511 (703)
.++|+||+-+.
T Consensus 358 ~l~~isl~i~~ 368 (587)
T 3qf4_A 358 VLSGVNFSVKP 368 (587)
T ss_dssp SEEEEEEEECT
T ss_pred ceeceEEEEcC
Confidence 35555555544
No 281
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.03 E-value=0.85 Score=51.86 Aligned_cols=24 Identities=4% Similarity=-0.114 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005302 242 GCCFGIANMILVKRMRETLYSALL 265 (703)
Q Consensus 242 ~~~~~~~~~~l~~~lr~~lf~~Ll 265 (703)
.+...+...++..++..++-.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~lr~~l~ 101 (578)
T 4a82_A 78 EFIRQYLAQWTSNKILYDIRKKLY 101 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 282
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.01 E-value=0.0029 Score=61.34 Aligned_cols=36 Identities=36% Similarity=0.457 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-----CC------cceEEECCEe
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLYE-----PT------NGQILIDGFP 565 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly~-----p~------sG~I~idG~d 565 (703)
+|+++|++|+|||||++-+.|... |+ .+.+.+||.+
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEE 71 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEE
Confidence 799999999999999999976432 22 3456677754
No 283
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.99 E-value=0.01 Score=63.45 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=24.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
++...+.|.||+|+||||+++.+....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 567789999999999999999998765
No 284
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.98 E-value=0.003 Score=60.03 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.++|+|++||||||+.+.|...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998765
No 285
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.98 E-value=0.0048 Score=57.27 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 286
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.96 E-value=0.0029 Score=60.97 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=25.4
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.++++..|+|+|++||||||+.+.|...+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34677899999999999999999998765
No 287
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.96 E-value=0.0052 Score=56.86 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLYE 553 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly~ 553 (703)
+++++|++|+|||||++.+.|-..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 689999999999999999988553
No 288
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.95 E-value=0.007 Score=56.67 Aligned_cols=42 Identities=24% Similarity=0.240 Sum_probs=30.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCC-----------CCcceEEECCEeCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYE-----------PTNGQILIDGFPIK 567 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~-----------p~sG~I~idG~di~ 567 (703)
++.-+|+++|++|+|||||++-+.+-.. .....+.++|..+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKIT 58 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEE
Confidence 4567899999999999999999987321 12244667776543
No 289
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.94 E-value=0.0058 Score=56.98 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+|+++|++|+|||||++-+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999998865
No 290
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.93 E-value=0.0036 Score=59.79 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLYE 553 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly~ 553 (703)
.|+|.|++||||||+.+.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988664
No 291
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.92 E-value=0.003 Score=67.19 Aligned_cols=29 Identities=31% Similarity=0.537 Sum_probs=25.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEP 554 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p 554 (703)
..+..+.|.||+|+||||+++.+......
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56788999999999999999999987643
No 292
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.91 E-value=0.0064 Score=56.31 Aligned_cols=21 Identities=43% Similarity=0.607 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005302 530 VVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (703)
+|+++|++|+|||||++-+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999987
No 293
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.87 E-value=0.0032 Score=59.95 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=18.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.++..+.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 457889999999999999999998554
No 294
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.86 E-value=0.0036 Score=63.85 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.++|+||+|||||||.+.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998755
No 295
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.84 E-value=0.0043 Score=59.35 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
++..|+|+|++||||||+.+.|..-+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999997644
No 296
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.81 E-value=0.016 Score=61.10 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=24.8
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.+|+..+.|.||+|+|||||++.+.+..
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4566789999999999999999999865
No 297
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.81 E-value=0.0081 Score=58.64 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005302 530 VVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (703)
+|+++|++|+|||||++-+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 799999999999999997765
No 298
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.80 E-value=0.007 Score=55.56 Aligned_cols=23 Identities=43% Similarity=0.524 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+++++|++|+|||||++-+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998764
No 299
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.77 E-value=0.0088 Score=57.14 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005302 530 VVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (703)
+|+|+|++|+|||||++.+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999999987
No 300
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.72 E-value=0.0046 Score=59.98 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.++|+|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
No 301
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.71 E-value=0.0049 Score=59.24 Aligned_cols=23 Identities=39% Similarity=0.703 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998766
No 302
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.68 E-value=0.0058 Score=60.36 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=23.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
++|-.+.|+|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467889999999999999999998765
No 303
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.67 E-value=0.0052 Score=60.34 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+++|+|++||||||+.+.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999996544
No 304
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.65 E-value=0.011 Score=56.15 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=28.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcC----CCCCcc----eEEECCEe
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRL----YEPTNG----QILIDGFP 565 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl----y~p~sG----~I~idG~d 565 (703)
++.=+|+++|++|+|||||++-+.+- +.|+-| .+.+++..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 63 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFK 63 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEE
Confidence 44568999999999999999999873 455555 34445443
No 305
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.65 E-value=0.0076 Score=55.77 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+|+++|++|+|||||++-+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998764
No 306
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.61 E-value=0.011 Score=64.68 Aligned_cols=36 Identities=31% Similarity=0.406 Sum_probs=28.0
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECC
Q 005302 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG 563 (703)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG 563 (703)
.=++.+.+.|+|+|||||||+.+.|..-+ |-+.+|.
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~ 289 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNR 289 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEcc
Confidence 34567899999999999999999998644 4455543
No 307
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.61 E-value=0.0034 Score=65.49 Aligned_cols=26 Identities=23% Similarity=0.535 Sum_probs=19.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
++-.|+|.|+|||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998755
No 308
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.61 E-value=0.006 Score=60.62 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=22.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.++..++|+|++||||||+.+.|..-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998644
No 309
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.60 E-value=0.012 Score=54.55 Aligned_cols=30 Identities=37% Similarity=0.432 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC----CCCCcc
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRL----YEPTNG 557 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl----y~p~sG 557 (703)
.=+|+++|++|+|||||++-+.+- +.|+-|
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~ 40 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVTTIPTIG 40 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCc
Confidence 447999999999999999999762 455555
No 310
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.58 E-value=0.0063 Score=57.29 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+.++|+|++||||||+.+.|...+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999997643
No 311
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.57 E-value=0.006 Score=56.37 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 312
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.57 E-value=0.0068 Score=58.92 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.+-.|+|+|++||||||+.+.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998754
No 313
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.56 E-value=0.011 Score=57.06 Aligned_cols=35 Identities=34% Similarity=0.410 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC-----CCCCcc------eEEECCE
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL-----YEPTNG------QILIDGF 564 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl-----y~p~sG------~I~idG~ 564 (703)
+|+++|++|+|||||++-+.+- +.|+.| .+.++|.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~ 55 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGK 55 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCE
Confidence 6899999999999999999863 345444 4666664
No 314
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.56 E-value=0.0063 Score=57.04 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997744
No 315
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.56 E-value=0.0051 Score=63.77 Aligned_cols=36 Identities=25% Similarity=0.213 Sum_probs=29.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCcceE-EECC
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI-LIDG 563 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I-~idG 563 (703)
...+.|+||+|+||||+++.+.+...+.+|.+ .+|.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~ 83 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 83 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeec
Confidence 36899999999999999999999998877754 3443
No 316
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.56 E-value=0.0068 Score=61.96 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-----------CCcceEEECCEe
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLYE-----------PTNGQILIDGFP 565 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly~-----------p~sG~I~idG~d 565 (703)
+|+++|.+|||||||++.|.|-.. ...|.+.++|.+
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~ 49 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHL 49 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeE
Confidence 699999999999999999999742 234566666653
No 317
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.53 E-value=0.0057 Score=60.49 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.+..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999997654
No 318
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.52 E-value=0.0063 Score=59.80 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.++|+|++||||||+.+.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999997654
No 319
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.52 E-value=0.0068 Score=58.86 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
....|+|+|++||||||+.+.|...+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999999998654
No 320
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.52 E-value=0.0054 Score=58.61 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly 552 (703)
..|+|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999997654
No 321
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.49 E-value=0.0085 Score=57.01 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-|++-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999986
No 322
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.49 E-value=0.0063 Score=58.07 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+..++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999997654
No 323
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.48 E-value=0.0065 Score=57.18 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly 552 (703)
..++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998654
No 324
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.47 E-value=0.0069 Score=57.92 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998755
No 325
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.46 E-value=0.007 Score=55.61 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999988753
No 326
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.46 E-value=0.0069 Score=55.49 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999865
No 327
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.45 E-value=0.0097 Score=54.92 Aligned_cols=28 Identities=36% Similarity=0.402 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC-----CCCCcc
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL-----YEPTNG 557 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl-----y~p~sG 557 (703)
+|+++|++|+|||||++-+++- +.|+.|
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~ 40 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG 40 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc
Confidence 6899999999999999999863 445555
No 328
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.44 E-value=0.0074 Score=55.99 Aligned_cols=23 Identities=43% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+|+++|++|+|||||++-+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999998643
No 329
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.007 Score=57.76 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRLYE 553 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgly~ 553 (703)
.=+|+++|++|+|||||++.+.+-..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34899999999999999999998653
No 330
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.42 E-value=0.0072 Score=59.15 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly 552 (703)
-.++|+|++||||||+.+.|...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 569999999999999999998753
No 331
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.42 E-value=0.0069 Score=62.08 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLYE 553 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly~ 553 (703)
+|+++|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999999753
No 332
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.42 E-value=0.011 Score=56.20 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=24.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC-----CCCCcce
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL-----YEPTNGQ 558 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl-----y~p~sG~ 558 (703)
+|+++|++|+|||||++-+.+- |.|+.|.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~ 42 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE 42 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccce
Confidence 6899999999999999999865 4566553
No 333
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.41 E-value=0.0073 Score=55.54 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 334
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.38 E-value=0.0075 Score=55.81 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 335
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.38 E-value=0.0073 Score=61.21 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly 552 (703)
-.|+|+|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999997743
No 336
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.36 E-value=0.0076 Score=57.30 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLYEP 554 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly~p 554 (703)
+|+++|++|+|||||++.+.|-+.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987654
No 337
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.34 E-value=0.008 Score=55.45 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+++++|++|+|||||++-+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 338
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.33 E-value=0.0082 Score=56.23 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999988764
No 339
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.32 E-value=0.012 Score=56.05 Aligned_cols=39 Identities=31% Similarity=0.435 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcC----CCCCcc----eEEECCEe
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRL----YEPTNG----QILIDGFP 565 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl----y~p~sG----~I~idG~d 565 (703)
+.=+|+++|++|+|||||++-+.+- +.|+-| .+.++|..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 61 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTR 61 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEE
Confidence 3457999999999999999999842 234433 55555544
No 340
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.31 E-value=0.0082 Score=55.43 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988754
No 341
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.31 E-value=0.0087 Score=60.50 Aligned_cols=27 Identities=30% Similarity=0.281 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+++-.++|.|++||||||+.+.|..-|
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999997654
No 342
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.31 E-value=0.0083 Score=56.09 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 343
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.30 E-value=0.015 Score=55.81 Aligned_cols=38 Identities=29% Similarity=0.347 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcC-----CCCCcc-----eEEECCE
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRL-----YEPTNG-----QILIDGF 564 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl-----y~p~sG-----~I~idG~ 564 (703)
+.=+|+++|++|+|||||++-+.+- |.|+.| .+.++|.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGR 66 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCE
Confidence 3447999999999999999998854 455555 3445554
No 344
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.29 E-value=0.016 Score=55.52 Aligned_cols=30 Identities=43% Similarity=0.553 Sum_probs=24.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC-----CCCCcce
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRL-----YEPTNGQ 558 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl-----y~p~sG~ 558 (703)
=+|+++|++|+|||||++-+.+- |.|+.|.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~ 63 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLES 63 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCc
Confidence 47999999999999999998864 4555553
No 345
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.28 E-value=0.0083 Score=60.79 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly 552 (703)
=+|+|||++|+|||||++.|+|--
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999999854
No 346
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.23 E-value=0.0086 Score=56.02 Aligned_cols=22 Identities=36% Similarity=0.366 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 347
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.22 E-value=0.0087 Score=57.10 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl 551 (703)
-=+|+++|++|+|||||++-+.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999875
No 348
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.21 E-value=0.0081 Score=61.71 Aligned_cols=23 Identities=43% Similarity=0.548 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+|++||++|+|||||++.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999987653
No 349
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.21 E-value=0.0088 Score=56.79 Aligned_cols=24 Identities=42% Similarity=0.475 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly 552 (703)
-+|+++|++|+|||||++-+++-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 379999999999999999998764
No 350
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.20 E-value=0.013 Score=62.48 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=24.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~ 553 (703)
+++..+.|+||+|||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567899999999999999999998774
No 351
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.17 E-value=0.016 Score=54.54 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998853
No 352
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.17 E-value=0.019 Score=54.82 Aligned_cols=29 Identities=38% Similarity=0.557 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC-----CCCCcce
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL-----YEPTNGQ 558 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl-----y~p~sG~ 558 (703)
+|+++|++|+|||||++-+.+- |.|+-|.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~ 56 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKRFISEYDPNLED 56 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCcccCCCccc
Confidence 7999999999999999887653 4666653
No 353
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.14 E-value=0.0077 Score=59.31 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEP 554 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly~p 554 (703)
++..+.|+||+|+||||+++.+......
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999876654
No 354
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.14 E-value=0.017 Score=54.39 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-----CCCCCcce
Q 005302 530 VVAIAGLSGSGKSTLVNLLLR-----LYEPTNGQ 558 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg-----ly~p~sG~ 558 (703)
+|+++|++|+|||||++-+.+ -++|+.|.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~ 41 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIEN 41 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccc
Confidence 689999999999999999983 34566553
No 355
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.13 E-value=0.016 Score=55.29 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlg 550 (703)
=+|+++|++|+|||||++-+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3799999999999999999987
No 356
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.13 E-value=0.01 Score=61.40 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlg 550 (703)
.-.|+|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 357
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.12 E-value=0.042 Score=57.66 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLYE 553 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly~ 553 (703)
..+.|.||+|+||||+++.+.....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999987653
No 358
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.12 E-value=0.011 Score=60.44 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+++..|.|+|++||||||+.+.|...+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998753
No 359
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.11 E-value=0.0099 Score=56.27 Aligned_cols=23 Identities=39% Similarity=0.395 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+|+++|++|+|||||++-+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999998853
No 360
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.11 E-value=0.01 Score=55.98 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++.|.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 361
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.10 E-value=0.01 Score=56.13 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005302 530 VVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (703)
+|+|+|++|+|||||++.+++
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
No 362
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.09 E-value=0.011 Score=54.62 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005302 530 VVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (703)
+++++|++|+|||||++-+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 363
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.09 E-value=0.0057 Score=59.53 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=24.2
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC
Q 005302 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 517 vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl 551 (703)
...|+.+.-.+--+|+++|++|+|||||++.+.+-
T Consensus 14 ~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 14 GTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp -----CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 44455444334458999999999999999999874
No 364
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.09 E-value=0.014 Score=55.84 Aligned_cols=28 Identities=36% Similarity=0.523 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC-----CCCCcc
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL-----YEPTNG 557 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl-----y~p~sG 557 (703)
+|+++|++|+|||||++-+.+- +.|+.|
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~ 57 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIG 57 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 6899999999999999999763 455655
No 365
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.09 E-value=0.081 Score=58.34 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEE
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILI 561 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~i 561 (703)
++..++++|++|+||||++.-|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46899999999999999999999888766556655
No 366
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.08 E-value=0.011 Score=55.30 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005302 530 VVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (703)
+|+++|++|+|||||++-+++
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 367
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.07 E-value=0.012 Score=55.12 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 368
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.06 E-value=0.02 Score=56.61 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly 552 (703)
=+|+|||++|+|||||++-+.|..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 379999999999999999998743
No 369
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.05 E-value=0.013 Score=54.14 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=28.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG 563 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG 563 (703)
+.+.-|-|.||+|+|||++++.+........+...+|.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~ 59 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRE 59 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEEC
Confidence 45677999999999999999999987655444333433
No 370
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.04 E-value=0.011 Score=61.08 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+|+++|++|||||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999964
No 371
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.04 E-value=0.014 Score=55.77 Aligned_cols=30 Identities=33% Similarity=0.446 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc------CCCCCcc
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLR------LYEPTNG 557 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlg------ly~p~sG 557 (703)
.-+|+++|++|+|||||++-+++ -|.|+-|
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~ 52 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG 52 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc
Confidence 34789999999999999999987 4566666
No 372
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.01 E-value=0.011 Score=55.33 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6999999999999999998863
No 373
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.01 E-value=0.017 Score=56.48 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=24.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC-----CCCCcce
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL-----YEPTNGQ 558 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl-----y~p~sG~ 558 (703)
+|+++|++|+|||||++-+.+- |.|+.|.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~ 63 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE 63 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCccce
Confidence 7999999999999999999875 4566554
No 374
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.94 E-value=0.012 Score=56.96 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=25.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCcce
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLYEPTNGQ 558 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly~p~sG~ 558 (703)
..+.|.||+|+|||||++.+........+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~ 84 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVS 84 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence 789999999999999999999877554333
No 375
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.94 E-value=0.013 Score=57.87 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+|-.+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999997755
No 376
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.92 E-value=0.012 Score=54.77 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+|+++|++|+|||||++-+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998643
No 377
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.90 E-value=0.013 Score=54.99 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+++-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999875
No 378
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.87 E-value=0.013 Score=55.08 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+++-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6999999999999999999863
No 379
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.84 E-value=0.02 Score=54.71 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999874
No 380
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.84 E-value=0.013 Score=55.63 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999864
No 381
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.82 E-value=0.013 Score=57.49 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999997654
No 382
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.82 E-value=0.013 Score=55.21 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998754
No 383
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.78 E-value=0.016 Score=54.46 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~ 553 (703)
+.+..+.|+||+|+||||+++.+...+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 4457899999999999999999887653
No 384
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.78 E-value=0.0067 Score=67.35 Aligned_cols=45 Identities=22% Similarity=0.365 Sum_probs=35.3
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEE
Q 005302 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILI 561 (703)
Q Consensus 516 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~i 561 (703)
.+++.+ ..+-+|++++|+|+||+|||||++.|.+-...+.|.|.+
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 355555 677899999999999999999999998776544455543
No 385
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.78 E-value=0.018 Score=54.90 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlg 550 (703)
=+|+++|++|+|||||++-+.+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999985
No 386
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.77 E-value=0.011 Score=58.13 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+-.++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
No 387
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.75 E-value=0.0099 Score=56.00 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhc
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlg 550 (703)
+.=+|+++|++|+|||||++-+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455899999999999999999984
No 388
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.74 E-value=0.015 Score=55.47 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 389
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.73 E-value=0.015 Score=55.95 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLYE 553 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly~ 553 (703)
+|+++|++|+|||||++.+.+-+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 799999999999999999998654
No 390
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.73 E-value=0.0016 Score=77.58 Aligned_cols=46 Identities=22% Similarity=0.329 Sum_probs=38.6
Q ss_pred eeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC
Q 005302 521 VNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE 568 (703)
Q Consensus 521 isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~~ 568 (703)
.++.+++|+.+.++||+|||||||++.+++... .+-+.+++.++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLT 549 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSSTT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhhh
Confidence 467789999999999999999999999999885 4567777766643
No 391
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.71 E-value=0.015 Score=55.98 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+|+|+|++|+|||||++-+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 69999999999999999998753
No 392
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.70 E-value=0.015 Score=55.86 Aligned_cols=29 Identities=38% Similarity=0.560 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC-----CCCCcce
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL-----YEPTNGQ 558 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl-----y~p~sG~ 558 (703)
+|+|+|++|+|||||++-+.+- |.|+.|.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~ 49 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD 49 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccce
Confidence 6899999999999999999754 3555554
No 393
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.69 E-value=0.028 Score=54.23 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999874
No 394
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.68 E-value=0.015 Score=56.02 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005302 530 VVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (703)
+|+|||++|+|||||++-+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999986
No 395
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.68 E-value=0.015 Score=58.76 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly 552 (703)
-+|+|+|++|+|||||++-|+|--
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999999753
No 396
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.68 E-value=0.0093 Score=58.40 Aligned_cols=25 Identities=40% Similarity=0.464 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.-+|+++|++|+|||||++-|+|-.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999999864
No 397
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.65 E-value=0.02 Score=61.69 Aligned_cols=31 Identities=32% Similarity=0.499 Sum_probs=25.6
Q ss_pred ceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh
Q 005302 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL 549 (703)
Q Consensus 518 L~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLl 549 (703)
+++..++..+ ...+|+||+||||||++..|.
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 3666677666 589999999999999999775
No 398
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.64 E-value=0.021 Score=56.32 Aligned_cols=36 Identities=31% Similarity=0.265 Sum_probs=28.5
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 516 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
..++..-+++ .|..++|+||||+|||||+.-|..-.
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3566665554 68899999999999999999887643
No 399
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.63 E-value=0.016 Score=55.13 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005302 530 VVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (703)
+|+++|++|+|||||++-+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999875
No 400
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.61 E-value=0.016 Score=55.33 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+|+|+|++|+|||||++-+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999998644
No 401
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.60 E-value=0.017 Score=55.58 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 402
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.60 E-value=0.026 Score=55.57 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+|+|++|+|||||++-+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999864
No 403
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.60 E-value=0.011 Score=65.58 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=26.9
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhc
Q 005302 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 517 vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlg 550 (703)
-|+.+.==+++|+.+.|.|++|+||||++--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3444433489999999999999999999876654
No 404
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.60 E-value=0.016 Score=55.89 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.=+|+++|++|+|||||++.+.+-.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3479999999999999999998753
No 405
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.59 E-value=0.017 Score=54.35 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005302 530 VVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (703)
+|+++|++|+|||||++-+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998874
No 406
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.59 E-value=0.017 Score=61.67 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLYE 553 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly~ 553 (703)
..++|+||||||||||.+.|...+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999987664
No 407
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.58 E-value=0.017 Score=55.71 Aligned_cols=34 Identities=24% Similarity=0.136 Sum_probs=26.0
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhc
Q 005302 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 516 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlg 550 (703)
..++..-++ -.|.-+.|.|+||+||||+...|..
T Consensus 5 ~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 345554443 4688999999999999999987754
No 408
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.57 E-value=0.016 Score=56.45 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly 552 (703)
-+++++|++|+|||||++.+.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998854
No 409
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.57 E-value=0.018 Score=57.39 Aligned_cols=29 Identities=34% Similarity=0.682 Sum_probs=26.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEP 554 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p 554 (703)
++|..+++-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999988765
No 410
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.57 E-value=0.016 Score=60.60 Aligned_cols=22 Identities=55% Similarity=0.670 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+|||++|+|||||++.|+|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 411
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.57 E-value=0.017 Score=57.32 Aligned_cols=23 Identities=43% Similarity=0.524 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997655
No 412
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.54 E-value=0.021 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+|+++|++|+|||||++.+++-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 69999999999999999998743
No 413
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.52 E-value=0.016 Score=58.33 Aligned_cols=28 Identities=21% Similarity=0.506 Sum_probs=22.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~ 553 (703)
.+|..|+|-|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999986653
No 414
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.51 E-value=0.017 Score=55.44 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 415
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.50 E-value=0.021 Score=57.04 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
..+..+.|+|++||||||+.+.|..-+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998765
No 416
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.48 E-value=0.019 Score=55.53 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999854
No 417
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.47 E-value=0.018 Score=57.02 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl 551 (703)
-+|+++|++|+|||||++-+++-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 418
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.46 E-value=0.018 Score=54.93 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 419
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}
Probab=94.45 E-value=0.022 Score=57.54 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=35.5
Q ss_pred CCcccceeeeecCcEEEeCCCCCCCCcc--eeechhHHHHHHHH
Q 005302 96 CCHFHPLKSSSINGFSVQNDSLEHFDGE--VNVDFNEKIRRWIR 137 (703)
Q Consensus 96 ~nhfvvl~~v~~~~~~i~dp~~~~a~g~--r~~~~~e~~~~ftg 137 (703)
-+|||||.+..++.+.|+|| +.|+ ++++++|+.+.|+.
T Consensus 176 ~~H~VVl~GYd~~~vyi~DP----~~g~~~~~vs~~eFe~~w~~ 215 (236)
T 3erv_A 176 NEHCVVLIGYDQESVYIRDP----LKDSLDVKVPREKFEQAWVQ 215 (236)
T ss_dssp TEEEEEEEEECSSEEEEECT----TSCCSCCEEEHHHHHHHHHH
T ss_pred CCeEEEEEEEeCCEEEEECC----CCCCccEEEcHHHHHHHHHh
Confidence 57999999999999999999 9997 89999999998876
No 420
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.41 E-value=0.021 Score=56.78 Aligned_cols=28 Identities=32% Similarity=0.405 Sum_probs=24.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~ 553 (703)
.+|..++|.|++||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999976654
No 421
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.40 E-value=0.016 Score=55.27 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly 552 (703)
=+|+++|++|+|||||++-+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998754
No 422
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.39 E-value=8.8 Score=43.61 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=8.5
Q ss_pred EEEEEEEEcCCC
Q 005302 501 DFVDVSFRYSSR 512 (703)
Q Consensus 501 ~~~nVsF~Y~~~ 512 (703)
.++|+||+-+.+
T Consensus 370 ~l~~isl~i~~G 381 (598)
T 3qf4_B 370 VLKDITFHIKPG 381 (598)
T ss_dssp SCCSEEEECCTT
T ss_pred cccceEEEEcCC
Confidence 478888887543
No 423
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.39 E-value=0.019 Score=59.02 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+|+++|.+|||||||++.|+|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999864
No 424
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.38 E-value=0.022 Score=58.49 Aligned_cols=31 Identities=32% Similarity=0.413 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCcceE
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI 559 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly~p~sG~I 559 (703)
.++++||.+|+|||||++.|.|-..+..|.+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~ 130 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ 130 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCC
Confidence 5999999999999999999999776555543
No 425
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.37 E-value=0.023 Score=53.27 Aligned_cols=24 Identities=17% Similarity=-0.002 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl 551 (703)
-=+++++|++|+|||||++-+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999998864
No 426
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.37 E-value=0.02 Score=64.62 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
....|.++|.+||||||+.+.|...+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999998765
No 427
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.36 E-value=0.033 Score=54.03 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc-----CCCCCcceE
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLR-----LYEPTNGQI 559 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlg-----ly~p~sG~I 559 (703)
.=+|+++|++|+|||||++-+.+ -+.|+.|..
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~ 66 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN 66 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecce
Confidence 45799999999999999987774 445555543
No 428
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.36 E-value=8.8 Score=43.43 Aligned_cols=9 Identities=33% Similarity=0.501 Sum_probs=4.8
Q ss_pred EEEEEEEcC
Q 005302 502 FVDVSFRYS 510 (703)
Q Consensus 502 ~~nVsF~Y~ 510 (703)
++|+||+-+
T Consensus 359 l~~i~l~i~ 367 (582)
T 3b5x_A 359 LSHVSFSIP 367 (582)
T ss_pred cccceEEEC
Confidence 555555543
No 429
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.35 E-value=0.023 Score=59.94 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+..++|+||||||||||.+-|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4579999999999999999998765
No 430
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.35 E-value=0.02 Score=55.37 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl 551 (703)
.=+|+++|++|+|||||++-+++-
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999999854
No 431
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.35 E-value=0.018 Score=54.44 Aligned_cols=37 Identities=32% Similarity=0.468 Sum_probs=27.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC----CCCCcc----eEEECCEe
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRL----YEPTNG----QILIDGFP 565 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl----y~p~sG----~I~idG~d 565 (703)
=+|+++|++|+|||||++-+.+- +.|+-| .+.++|..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTR 66 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEE
Confidence 36899999999999999999863 344444 35555543
No 432
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.34 E-value=0.016 Score=54.32 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl 551 (703)
=+|+++|++|+|||||++-+.+-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999988863
No 433
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.33 E-value=0.023 Score=57.48 Aligned_cols=27 Identities=30% Similarity=0.617 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly~ 553 (703)
+|..++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999977664
No 434
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.32 E-value=0.021 Score=54.23 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999999864
No 435
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.30 E-value=0.022 Score=55.76 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005302 530 VVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (703)
+|+++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 799999999999999999986
No 436
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.30 E-value=0.02 Score=59.93 Aligned_cols=24 Identities=50% Similarity=0.515 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly 552 (703)
..|||+|++|+|||||++-|+|--
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 579999999999999999999853
No 437
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.29 E-value=0.021 Score=55.89 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly 552 (703)
-.++|+|++|+|||||++-|++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 479999999999999999888764
No 438
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.28 E-value=0.021 Score=54.96 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+.=+|+|+|++|+|||||++-+++-
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3457999999999999999999864
No 439
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.26 E-value=0.023 Score=56.91 Aligned_cols=27 Identities=37% Similarity=0.489 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly~ 553 (703)
+|..++|.|..||||||+++.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999987663
No 440
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.24 E-value=0.022 Score=58.12 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+|+++|++|||||||++-|+|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
No 441
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.23 E-value=0.023 Score=55.32 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+|+|+|++|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
No 442
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.19 E-value=0.025 Score=56.76 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=24.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~ 553 (703)
++|..++|.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999976553
No 443
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.19 E-value=0.029 Score=54.96 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=24.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC-----CCCCcceE
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRL-----YEPTNGQI 559 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl-----y~p~sG~I 559 (703)
=+|+++|++|+|||||++-+.+- |.|+-|.-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~ 63 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN 63 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEE
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeee
Confidence 47999999999999999988764 45665543
No 444
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.18 E-value=0.027 Score=56.04 Aligned_cols=28 Identities=32% Similarity=0.567 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEP 554 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly~p 554 (703)
+|..|++-|++||||||+++.|...+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999999877653
No 445
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.17 E-value=0.03 Score=54.42 Aligned_cols=24 Identities=38% Similarity=0.393 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly 552 (703)
=+|+++|++|+|||||++-+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998643
No 446
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.16 E-value=0.023 Score=58.72 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlg 550 (703)
..+.|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 447
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.16 E-value=0.02 Score=53.72 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=24.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEP 554 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p 554 (703)
+.+..+.|+||+|+||||+++.+...+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 44678899999999999999999887644
No 448
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.15 E-value=0.023 Score=58.08 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+|+++|++|+|||||++.|+|--
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999754
No 449
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.14 E-value=0.024 Score=57.77 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+|+++|++|+|||||++.|+|--
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 450
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.09 E-value=0.016 Score=54.59 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=9.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999988754
No 451
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.06 E-value=0.017 Score=58.78 Aligned_cols=29 Identities=38% Similarity=0.460 Sum_probs=24.8
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005302 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (703)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgly~ 553 (703)
.++|..|+|.|+.||||||+++.|...+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 36788999999999999999999988773
No 452
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.01 E-value=0.024 Score=54.41 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=25.2
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhc
Q 005302 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 516 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlg 550 (703)
.+++.+- -++.=+|+++|++|+|||||++-+.+
T Consensus 19 ~~~~~~~--~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 19 SLFSRIF--GKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CGGGGTT--TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred HHHHHhc--cCCccEEEEECCCCCCHHHHHHHHHh
Confidence 3555431 24456899999999999999999975
No 453
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.98 E-value=0.027 Score=53.73 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999864
No 454
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.94 E-value=0.026 Score=58.58 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.|+|||++|+|||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999975
No 455
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.92 E-value=0.025 Score=58.12 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly 552 (703)
=+|+|||++|+|||||++.|+|--
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 379999999999999999999865
No 456
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.92 E-value=0.0095 Score=60.49 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=24.9
Q ss_pred ceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC
Q 005302 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 518 L~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+.+++...++| +.|.||+|+||||+++.+.+.
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 44444555555 889999999999999999863
No 457
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.83 E-value=0.028 Score=59.51 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLYE 553 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly~ 553 (703)
..++|+||+|||||||.+.|..-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998764
No 458
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.81 E-value=0.029 Score=55.08 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly 552 (703)
-+++|+|.+|+|||||++-+++-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 379999999999999998887653
No 459
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.81 E-value=0.032 Score=56.01 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=23.1
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+++...+.|.||+|+||||+++.+.+.+
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3445668999999999999999998744
No 460
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.81 E-value=11 Score=42.59 Aligned_cols=8 Identities=0% Similarity=0.426 Sum_probs=3.8
Q ss_pred EEEEEEEc
Q 005302 502 FVDVSFRY 509 (703)
Q Consensus 502 ~~nVsF~Y 509 (703)
++||||+-
T Consensus 359 l~~v~~~i 366 (582)
T 3b60_A 359 LRNINLKI 366 (582)
T ss_dssp EEEEEEEE
T ss_pred ccceeEEE
Confidence 44455444
No 461
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.77 E-value=0.032 Score=58.38 Aligned_cols=27 Identities=33% Similarity=0.586 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+++-+|+++|++|+|||||++.+.+-+
T Consensus 1 ~~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 1 PLGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence 345689999999999999999987753
No 462
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.75 E-value=0.023 Score=55.23 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=28.4
Q ss_pred cceeeeEEecCCc---EEEEEcCCCCcHHHHHHHHhcCCCC
Q 005302 517 VLQHVNISVNPGE---VVAIAGLSGSGKSTLVNLLLRLYEP 554 (703)
Q Consensus 517 vL~~isl~I~~Ge---~vAIVG~SGsGKSTLlkLLlgly~p 554 (703)
.++.+.-.+..|+ .+.|+||+|+||||+++.+...+..
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4444444445555 7999999999999999999876643
No 463
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.70 E-value=0.015 Score=56.71 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+|+|++|+|||||++.+++-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998853
No 464
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.64 E-value=0.03 Score=54.82 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCCCEEEEeCCCC-----CCCHHHHHHHHHHHHh
Q 005302 645 RIAIARAILRDPTILILDEATS-----ALDAESEHNIKVATLS 682 (703)
Q Consensus 645 RIaLARAL~r~p~ILILDEaTS-----aLD~~tE~~I~~al~~ 682 (703)
.-.|++.+.++|..-..++|+. .+|....+++.+.++.
T Consensus 166 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
T 3gj0_A 166 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEV 208 (221)
T ss_dssp HHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhh
Confidence 4478999999999988887766 7888888887776654
No 465
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.64 E-value=0.023 Score=53.99 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhc
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlg 550 (703)
+.=+|+++|++|+|||||++-+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 445799999999999999999864
No 466
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.62 E-value=0.034 Score=53.80 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|+++|++|+|||||++-+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 6899999999999999998753
No 467
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.47 E-value=0.034 Score=55.48 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=25.4
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+.++...+.|.||.||||+|..+.|..-|
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45677889999999999999999998766
No 468
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.45 E-value=0.018 Score=55.36 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=5.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl 551 (703)
=+|+++|++|+|||||++-+.+-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999988765
No 469
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.43 E-value=0.04 Score=57.94 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRLYE 553 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgly~ 553 (703)
...++|+||||||||||..-|+.-+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45789999999999999999987653
No 470
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=93.40 E-value=0.037 Score=61.47 Aligned_cols=48 Identities=29% Similarity=0.428 Sum_probs=33.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC----CCC--------cceEEECCEeCCCCChHH
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY----EPT--------NGQILIDGFPIKEVDIKW 573 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly----~p~--------sG~I~idG~di~~i~~~~ 573 (703)
+.|=+|+|+|++|+|||||++.|+|-- .+. ...+.++|.++.=+|..-
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G 281 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAG 281 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC---
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCc
Confidence 456679999999999999999998842 111 235788998775555433
No 471
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.31 E-value=0.014 Score=64.29 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=31.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK 567 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly~p~sG~I~idG~di~ 567 (703)
..++|+|++|+||||++.-|.+.+.....+|.+-..|..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 589999999999999999999988766566766554543
No 472
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.30 E-value=13 Score=42.01 Aligned_cols=13 Identities=31% Similarity=0.227 Sum_probs=9.9
Q ss_pred EEEEEEEEEcCCC
Q 005302 500 IDFVDVSFRYSSR 512 (703)
Q Consensus 500 I~~~nVsF~Y~~~ 512 (703)
-.++||||+-+.+
T Consensus 358 ~vl~~isl~i~~G 370 (595)
T 2yl4_A 358 PIFQDFSLSIPSG 370 (595)
T ss_dssp EEEEEEEEEECTT
T ss_pred ccccceEEEEcCC
Confidence 4689999998643
No 473
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.26 E-value=0.019 Score=62.16 Aligned_cols=52 Identities=17% Similarity=0.301 Sum_probs=38.6
Q ss_pred cEEEEEEEEEcCCCCCcccce-----------eeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 499 RIDFVDVSFRYSSREMVPVLQ-----------HVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~-----------~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
...|++++--||.. +..++ |.=+.|-+|++.+|+|++|+|||||++-|.+..
T Consensus 137 r~~fe~l~Pi~P~~--R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 137 RVNFDNLTPDYPRE--RFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp CCCGGGSCEECCCS--BCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ccccccCCCCCchh--hccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 34455655556542 33444 555789999999999999999999999888753
No 474
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.23 E-value=0.045 Score=54.34 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh-c----CCCCCcc
Q 005302 530 VVAIAGLSGSGKSTLVNLLL-R----LYEPTNG 557 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLl-g----ly~p~sG 557 (703)
+|+|+|.+|+|||||++-+. | -|.|+-|
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig 47 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 47 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC--------
T ss_pred EEEEECcCCcCHHHHHHHHHhCCCCCCcCCccc
Confidence 69999999999999998765 3 3466666
No 475
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.21 E-value=0.046 Score=57.35 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=24.6
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhc
Q 005302 524 SVNPGEVVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlg 550 (703)
-+++|+.+.|.|++|||||||+.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999999987764
No 476
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.20 E-value=0.043 Score=53.19 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlg 550 (703)
=+|+++|++|+|||||++-+.+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999998875
No 477
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.18 E-value=0.053 Score=53.75 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.8
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHH
Q 005302 525 VNPGEVVAIAGLSGSGKSTLVNLL 548 (703)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLL 548 (703)
+++|+.+.|.|++|+||||++--+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHH
Confidence 899999999999999999997543
No 478
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.18 E-value=0.053 Score=56.17 Aligned_cols=30 Identities=33% Similarity=0.413 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCcc
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRLYEPTNG 557 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG 557 (703)
+-++++||.+|+|||||++.|.|-.....|
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 347999999999999999999987644433
No 479
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.08 E-value=0.037 Score=59.36 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=34.5
Q ss_pred ccceeeeEE---ecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-cceEEECCE
Q 005302 516 PVLQHVNIS---VNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT-NGQILIDGF 564 (703)
Q Consensus 516 ~vL~~isl~---I~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~-sG~I~idG~ 564 (703)
+-|+.+ +. +++|+.+.|.|++|||||||+.-++.-.... ...+++|..
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 345554 44 8999999999999999999998776544322 235566653
No 480
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.03 E-value=0.048 Score=59.42 Aligned_cols=25 Identities=40% Similarity=0.606 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLYE 553 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly~ 553 (703)
..++|+||||||||||.+-|+.-+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999886653
No 481
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.91 E-value=0.046 Score=61.43 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=26.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEP 554 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p 554 (703)
+.|-.+.++|.|||||||+.+.|..-+.-
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 56788999999999999999999988764
No 482
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.79 E-value=0.058 Score=55.69 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
++..+.|.||+|+||||+++.+...+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999998877665
No 483
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.77 E-value=0.081 Score=58.15 Aligned_cols=37 Identities=35% Similarity=0.426 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC----C--------CCcceEEECCEeC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY----E--------PTNGQILIDGFPI 566 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly----~--------p~sG~I~idG~di 566 (703)
+|||||.+|+|||||++-|.|-- . ...|.+.++|.++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~ 51 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTF 51 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEE
Confidence 69999999999999999999753 2 2346677777643
No 484
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=92.71 E-value=0.076 Score=56.61 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=34.1
Q ss_pred eeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC-----------CCCcceEEECC
Q 005302 519 QHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY-----------EPTNGQILIDG 563 (703)
Q Consensus 519 ~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlgly-----------~p~sG~I~idG 563 (703)
..+.++++---.|+|||.+|+|||||++.|++-- .|+-|.+.+++
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~ 204 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD 204 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC
Confidence 4566666666689999999999999999998642 45556666654
No 485
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=92.60 E-value=0.051 Score=58.50 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
++..+++||++|+|||||+|.|.|-.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~ 186 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEA 186 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhc
Confidence 57889999999999999999999873
No 486
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.41 E-value=0.063 Score=61.30 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=29.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc---eEEECCE
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG---QILIDGF 564 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG---~I~idG~ 564 (703)
++|-.|.|+|.|||||||+.+.|...+.- .| .+.+||-
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~-~G~~~~~~lD~D 434 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQ-QGGRSVSLLLGD 434 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH-HCSSCEEEEEHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcc-cCCceEEEECcH
Confidence 45678999999999999999999876542 23 4666653
No 487
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.40 E-value=0.062 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
.+.|.||+|+||||+++.+...+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999998754
No 488
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=92.33 E-value=0.053 Score=58.35 Aligned_cols=26 Identities=31% Similarity=0.584 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+|..+++||++|+|||||+|.|.|-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 68899999999999999999999864
No 489
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.26 E-value=0.061 Score=57.32 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly 552 (703)
++..+.|.||+|+||||+++.|...+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 35568899999999999999999876
No 490
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.23 E-value=0.075 Score=52.37 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLRLYE 553 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgly~ 553 (703)
|..|+|=|.-||||||++++|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999988764
No 491
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=91.42 E-value=0.026 Score=54.45 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Q 005302 528 GEVVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlg 550 (703)
.=+|+++|++|+|||||++-+.+
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 34799999999999999987764
No 492
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=92.18 E-value=0.1 Score=54.93 Aligned_cols=34 Identities=32% Similarity=0.329 Sum_probs=27.2
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhc
Q 005302 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLR 550 (703)
Q Consensus 516 ~vL~~isl~I~~Ge~vAIVG~SGsGKSTLlkLLlg 550 (703)
..+++.-+++ .|.-|.|.|+||+||||+..-|..
T Consensus 136 ~~~H~~~v~~-~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 136 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred ceeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4677755555 588899999999999999987754
No 493
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=92.14 E-value=0.12 Score=56.63 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=32.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC----C--------CcceEEECCEeCCCCChHHh
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLYE----P--------TNGQILIDGFPIKEVDIKWL 574 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly~----p--------~sG~I~idG~di~~i~~~~l 574 (703)
++++||.+|+|||||++-++|-.. + ..+.+.++|..+.=+|..-.
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~ 233 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGM 233 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCc
Confidence 899999999999999999998642 1 12355667766555554444
No 494
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.11 E-value=0.11 Score=52.62 Aligned_cols=38 Identities=26% Similarity=0.278 Sum_probs=29.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-eEEECC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG-QILIDG 563 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG-~I~idG 563 (703)
+.+..+.|.||+|+|||++++.+........+ -+.+|.
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~ 65 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEG
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEec
Confidence 45678999999999999999999988765433 344443
No 495
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=92.08 E-value=0.018 Score=55.41 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgly 552 (703)
+|+++|++|+|||||++.+.+-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999888743
No 496
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.07 E-value=0.078 Score=51.96 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005302 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (703)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgly 552 (703)
-.|+|.|+.||||||+.+.|..-+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 479999999999999999997654
No 497
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=92.03 E-value=0.064 Score=58.95 Aligned_cols=22 Identities=45% Similarity=0.521 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005302 530 VVAIAGLSGSGKSTLVNLLLRL 551 (703)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (703)
+|||||++|+|||||++-|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999984
No 498
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=91.96 E-value=0.052 Score=60.56 Aligned_cols=45 Identities=31% Similarity=0.338 Sum_probs=30.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC------------CCCcceEEECCEeCCCCC
Q 005302 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY------------EPTNGQILIDGFPIKEVD 570 (703)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgly------------~p~sG~I~idG~di~~i~ 570 (703)
+.|=+|+|+|++|+|||||++.|+|-- ++..+.+.++|.++.=+|
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liD 287 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTD 287 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEE
Confidence 345569999999999999999999862 123356778887664443
No 499
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.88 E-value=0.078 Score=60.99 Aligned_cols=39 Identities=36% Similarity=0.431 Sum_probs=29.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc--eEEECCEeC
Q 005302 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG--QILIDGFPI 566 (703)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgly~p~sG--~I~idG~di 566 (703)
+|..|.|+|.|||||||+.+.|...+.. .| .+.+||..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~-~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEechHHh
Confidence 5678999999999999999999876521 23 566776444
No 500
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.85 E-value=0.046 Score=60.50 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=30.1
Q ss_pred eeeeEEecCCc--EEEEEcCCCCcHHHHHHHHhcCCCCCcc
Q 005302 519 QHVNISVNPGE--VVAIAGLSGSGKSTLVNLLLRLYEPTNG 557 (703)
Q Consensus 519 ~~isl~I~~Ge--~vAIVG~SGsGKSTLlkLLlgly~p~sG 557 (703)
+.+.-.|+.|+ .+.|.||+|+||||+++.+.+...+.-.
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~ 79 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVE 79 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 34444566666 4999999999999999999998865433
Done!