Query 005303
Match_columns 703
No_of_seqs 271 out of 1341
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 21:29:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 59.5 4.4 0.00015 32.9 2.1 29 150-178 17-45 (56)
2 1x4u_A Zinc finger, FYVE domai 57.6 5.6 0.00019 33.8 2.6 27 150-176 12-40 (84)
3 3j21_g 50S ribosomal protein L 56.5 4.2 0.00014 32.4 1.5 27 151-177 13-39 (51)
4 1joc_A EEA1, early endosomal a 51.5 6.3 0.00022 36.1 2.1 28 150-177 67-96 (125)
5 1z2q_A LM5-1; membrane protein 51.3 8.2 0.00028 32.9 2.6 28 150-177 19-48 (84)
6 2yw8_A RUN and FYVE domain-con 49.8 8.2 0.00028 32.7 2.3 28 150-177 17-46 (82)
7 1wfk_A Zinc finger, FYVE domai 48.2 9.1 0.00031 33.1 2.4 28 150-177 7-36 (88)
8 1dvp_A HRS, hepatocyte growth 44.1 8.5 0.00029 38.0 1.8 25 153-177 162-188 (220)
9 1vfy_A Phosphatidylinositol-3- 41.7 9.9 0.00034 31.5 1.6 23 154-176 13-37 (73)
10 3t7l_A Zinc finger FYVE domain 37.0 15 0.00051 31.7 2.0 26 151-176 19-46 (90)
11 1y02_A CARP2, FYVE-ring finger 34.7 13 0.00045 34.1 1.4 25 152-176 19-45 (120)
12 3zyq_A Hepatocyte growth facto 34.6 15 0.0005 36.7 1.8 24 154-177 166-191 (226)
13 2vrw_B P95VAV, VAV1, proto-onc 32.2 18 0.0006 38.3 2.0 29 150-178 355-386 (406)
14 2dkt_A Ring finger and CHY zin 30.5 19 0.00066 34.1 1.8 42 150-191 81-126 (143)
15 3u5e_m 60S ribosomal protein L 26.4 24 0.00083 31.8 1.6 26 150-175 91-118 (128)
16 1wv8_A TT1413, hypothetical pr 24.5 28 0.00096 29.5 1.5 15 566-580 7-21 (73)
17 1jh4_B PAIP1, polyadenylate-bi 22.2 29 0.00099 24.0 0.9 14 681-694 7-20 (26)
18 2dkt_A Ring finger and CHY zin 20.8 23 0.00078 33.6 0.3 31 154-184 103-136 (143)
19 3mpx_A FYVE, rhogef and PH dom 20.7 21 0.00071 37.9 0.0 24 152-175 375-400 (434)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=59.47 E-value=4.4 Score=32.87 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=24.5
Q ss_pred CCccccccccccccCCCccCccCCceeeC
Q 005303 150 DDALFCTLCNAEVRRFSKHCRSCDKCVDG 178 (703)
Q Consensus 150 d~~~yC~~C~i~KP~RShHCrvCnrCVlr 178 (703)
-....|..|.+.-|+++..|+.|+..-++
T Consensus 17 ~~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 17 FLKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred hchhhhccccCcCCcccccccCCCCCCCC
Confidence 45678999999999999999999865443
No 2
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.56 E-value=5.6 Score=33.84 Aligned_cols=27 Identities=26% Similarity=0.576 Sum_probs=19.5
Q ss_pred CCcccccccccc--ccCCCccCccCCcee
Q 005303 150 DDALFCTLCNAE--VRRFSKHCRSCDKCV 176 (703)
Q Consensus 150 d~~~yC~~C~i~--KP~RShHCrvCnrCV 176 (703)
++...|..|... .-.|-|||+.|++-+
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vf 40 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSF 40 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEE
Confidence 345568888763 346889999999854
No 3
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.46 E-value=4.2 Score=32.37 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.7
Q ss_pred CccccccccccccCCCccCccCCceee
Q 005303 151 DALFCTLCNAEVRRFSKHCRSCDKCVD 177 (703)
Q Consensus 151 ~~~yC~~C~i~KP~RShHCrvCnrCVl 177 (703)
..+.|..|....+.++++|+.|+.--+
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRL 39 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCC
T ss_pred CCccCCCCCCcCCCCceecCCCCCccc
Confidence 567899999999999999999987644
No 4
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=51.50 E-value=6.3 Score=36.13 Aligned_cols=28 Identities=25% Similarity=0.592 Sum_probs=20.5
Q ss_pred CCcccccccccc--ccCCCccCccCCceee
Q 005303 150 DDALFCTLCNAE--VRRFSKHCRSCDKCVD 177 (703)
Q Consensus 150 d~~~yC~~C~i~--KP~RShHCrvCnrCVl 177 (703)
.....|..|... ...|-|||+.||+-+-
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC 96 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFC 96 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEC
Confidence 345679999874 3468899999998543
No 5
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=51.27 E-value=8.2 Score=32.86 Aligned_cols=28 Identities=29% Similarity=0.590 Sum_probs=19.5
Q ss_pred CCcccccccccc--ccCCCccCccCCceee
Q 005303 150 DDALFCTLCNAE--VRRFSKHCRSCDKCVD 177 (703)
Q Consensus 150 d~~~yC~~C~i~--KP~RShHCrvCnrCVl 177 (703)
++...|..|+.. .-.|-|||+.|++-+-
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C 48 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLC 48 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEEC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEC
Confidence 345568888764 2358899999998543
No 6
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=49.77 E-value=8.2 Score=32.72 Aligned_cols=28 Identities=36% Similarity=0.796 Sum_probs=20.4
Q ss_pred CCccccccccccc--cCCCccCccCCceee
Q 005303 150 DDALFCTLCNAEV--RRFSKHCRSCDKCVD 177 (703)
Q Consensus 150 d~~~yC~~C~i~K--P~RShHCrvCnrCVl 177 (703)
++...|..|...= -.|-|||+.||+-+-
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C 46 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFC 46 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEC
Confidence 4556788887643 358899999998644
No 7
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=48.19 E-value=9.1 Score=33.08 Aligned_cols=28 Identities=14% Similarity=0.370 Sum_probs=20.9
Q ss_pred CCcccccccccc--ccCCCccCccCCceee
Q 005303 150 DDALFCTLCNAE--VRRFSKHCRSCDKCVD 177 (703)
Q Consensus 150 d~~~yC~~C~i~--KP~RShHCrvCnrCVl 177 (703)
++...|..|... .-.|-|||+.|++-+-
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC 36 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFC 36 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEC
Confidence 456679999874 3468899999998543
No 8
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=44.13 E-value=8.5 Score=37.99 Aligned_cols=25 Identities=28% Similarity=0.709 Sum_probs=18.5
Q ss_pred ccccccccc--ccCCCccCccCCceee
Q 005303 153 LFCTLCNAE--VRRFSKHCRSCDKCVD 177 (703)
Q Consensus 153 ~yC~~C~i~--KP~RShHCrvCnrCVl 177 (703)
..|..|... .-.|-|||+.||+.+-
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C 188 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFC 188 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CccCCCCCccCCcccccccCCcCCEEC
Confidence 468888753 2358899999998654
No 9
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=41.70 E-value=9.9 Score=31.49 Aligned_cols=23 Identities=30% Similarity=0.826 Sum_probs=17.0
Q ss_pred cccccccc--ccCCCccCccCCcee
Q 005303 154 FCTLCNAE--VRRFSKHCRSCDKCV 176 (703)
Q Consensus 154 yC~~C~i~--KP~RShHCrvCnrCV 176 (703)
.|..|... .-.|-|||+.||+-+
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cccCCCCccCCccccccCCCCCEEE
Confidence 58888763 235889999999854
No 10
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=37.04 E-value=15 Score=31.72 Aligned_cols=26 Identities=31% Similarity=0.758 Sum_probs=18.6
Q ss_pred Ccccccccccc--ccCCCccCccCCcee
Q 005303 151 DALFCTLCNAE--VRRFSKHCRSCDKCV 176 (703)
Q Consensus 151 ~~~yC~~C~i~--KP~RShHCrvCnrCV 176 (703)
+...|..|... .-.|-|||+.||+-+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEE
Confidence 44568888763 245789999999854
No 11
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=34.71 E-value=13 Score=34.12 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=18.2
Q ss_pred cccccccccc--ccCCCccCccCCcee
Q 005303 152 ALFCTLCNAE--VRRFSKHCRSCDKCV 176 (703)
Q Consensus 152 ~~yC~~C~i~--KP~RShHCrvCnrCV 176 (703)
...|..|... ...|-|||+.||+.+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~if 45 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNF 45 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEE
T ss_pred cCcccCcCCccccccccccCCCCCCee
Confidence 3568888763 346889999999853
No 12
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.64 E-value=15 Score=36.68 Aligned_cols=24 Identities=29% Similarity=0.693 Sum_probs=16.9
Q ss_pred cccccccc--ccCCCccCccCCceee
Q 005303 154 FCTLCNAE--VRRFSKHCRSCDKCVD 177 (703)
Q Consensus 154 yC~~C~i~--KP~RShHCrvCnrCVl 177 (703)
.|..|... .-.|-|||+.||+.+-
T Consensus 166 ~C~~C~~~F~~~~RrhHCR~CG~v~C 191 (226)
T 3zyq_A 166 ECHRCRVQFGVMTRKHHCRACGQIFC 191 (226)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred CCcCcCCCCCccccccccCCCcCEeC
Confidence 47777642 2347899999998644
No 13
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=32.17 E-value=18 Score=38.34 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=22.6
Q ss_pred CCccccccccccc---cCCCccCccCCceeeC
Q 005303 150 DDALFCTLCNAEV---RRFSKHCRSCDKCVDG 178 (703)
Q Consensus 150 d~~~yC~~C~i~K---P~RShHCrvCnrCVlr 178 (703)
....+|..|+..- -.|-|||+.|+..|.+
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~ 386 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHK 386 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECG
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccch
Confidence 4567899998754 4688999999987765
No 14
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=30.46 E-value=19 Score=34.12 Aligned_cols=42 Identities=31% Similarity=0.695 Sum_probs=30.2
Q ss_pred CCcccccccccccc-CCCccCccCCceeeCC--C-ccccccccccc
Q 005303 150 DDALFCTLCNAEVR-RFSKHCRSCDKCVDGF--D-HHCRWLNNCVG 191 (703)
Q Consensus 150 d~~~yC~~C~i~KP-~RShHCrvCnrCVlrf--D-HHCPWLnNCIG 191 (703)
-...||.+|+.+.+ ....||..||.|-.+- | -||---|.|+.
T Consensus 81 f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 81 FGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp SCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred ceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 45668888888754 3467888888888872 2 47877777764
No 15
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=26.44 E-value=24 Score=31.76 Aligned_cols=26 Identities=27% Similarity=0.621 Sum_probs=22.5
Q ss_pred CCccccccccccccCCCccCc--cCCce
Q 005303 150 DDALFCTLCNAEVRRFSKHCR--SCDKC 175 (703)
Q Consensus 150 d~~~yC~~C~i~KP~RShHCr--vCnrC 175 (703)
-...+|..|...-|+++..|+ .|+..
T Consensus 91 ~~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 91 CDKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp TSCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred cceEeeccccccCCchhhccchhhCCCc
Confidence 356889999999999999999 48764
No 16
>1wv8_A TT1413, hypothetical protein TTHA1013; structural genomics, unknown function, novel F riken structural genomics/proteomics initiative, RSGI; 2.20A {Thermus thermophilus} SCOP: d.304.1.1
Probab=24.46 E-value=28 Score=29.55 Aligned_cols=15 Identities=40% Similarity=0.838 Sum_probs=12.7
Q ss_pred ceeeccCCCceeeec
Q 005303 566 SVVWDQEAGRYVSVP 580 (703)
Q Consensus 566 sv~wd~~agr~vs~~ 580 (703)
-..||+|||-||...
T Consensus 7 ~~~~Deeagv~vA~s 21 (73)
T 1wv8_A 7 QALWDGEAGVWVAES 21 (73)
T ss_dssp EEEEETTTTEEEEEC
T ss_pred EEEEeCCCCEEEEEC
Confidence 468999999999764
No 17
>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B
Probab=22.17 E-value=29 Score=24.03 Aligned_cols=14 Identities=43% Similarity=0.610 Sum_probs=11.0
Q ss_pred CCCcceecCCCCCC
Q 005303 681 SNQLPVFTPGGSSG 694 (703)
Q Consensus 681 ~~~~pvf~p~~~~~ 694 (703)
+---|+|+|+++++
T Consensus 7 S~~ApeF~Psgys~ 20 (26)
T 1jh4_B 7 SVNAPEFYPSGYSS 20 (26)
T ss_dssp SCCCSCCCCTTCCC
T ss_pred CcCCceeccCcccc
Confidence 44569999999964
No 18
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=20.84 E-value=23 Score=33.62 Aligned_cols=31 Identities=26% Similarity=0.679 Sum_probs=23.7
Q ss_pred ccccccccccCCCccCccCCceeeC--CC-cccc
Q 005303 154 FCTLCNAEVRRFSKHCRSCDKCVDG--FD-HHCR 184 (703)
Q Consensus 154 yC~~C~i~KP~RShHCrvCnrCVlr--fD-HHCP 184 (703)
.|..|++-....-.||..||.|+.. +| |.|.
T Consensus 103 ~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 103 SCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp TTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred CCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 3667777777889999999999764 45 7764
No 19
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=20.73 E-value=21 Score=37.93 Aligned_cols=24 Identities=25% Similarity=0.768 Sum_probs=0.0
Q ss_pred ccccccccccc--cCCCccCccCCce
Q 005303 152 ALFCTLCNAEV--RRFSKHCRSCDKC 175 (703)
Q Consensus 152 ~~yC~~C~i~K--P~RShHCrvCnrC 175 (703)
...|..|...- -.|-|||+.||+.
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~ 400 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKI 400 (434)
T ss_dssp --------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCE
Confidence 44588887532 3467888888874
Done!