Query 005304
Match_columns 703
No_of_seqs 675 out of 3907
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 21:21:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0465 HflB ATP-dependent Zn 100.0 9E-112 2E-116 949.4 51.8 587 66-683 2-592 (596)
2 KOG0734 AAA+-type ATPase conta 100.0 5E-108 1E-112 881.4 37.8 442 220-683 293-736 (752)
3 CHL00176 ftsH cell division pr 100.0 2E-101 4E-106 888.7 58.1 584 91-687 47-631 (638)
4 KOG0731 AAA+-type ATPase conta 100.0 3E-100 7E-105 867.9 49.3 576 93-687 163-754 (774)
5 PRK10733 hflB ATP-dependent me 100.0 8.9E-93 1.9E-97 823.4 60.9 592 62-683 3-597 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 4.6E-83 9.9E-88 724.6 47.6 490 173-680 2-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 4.9E-62 1.1E-66 509.6 16.8 259 219-477 139-398 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 4.9E-55 1.1E-59 525.1 30.6 307 256-598 1622-1983(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 2.3E-50 5.1E-55 447.9 24.2 249 223-474 426-677 (693)
10 KOG0727 26S proteasome regulat 100.0 6.8E-50 1.5E-54 399.8 22.6 323 143-474 76-399 (408)
11 KOG0733 Nuclear AAA ATPase (VC 100.0 6.3E-48 1.4E-52 422.5 24.1 248 225-475 505-773 (802)
12 KOG0726 26S proteasome regulat 100.0 1.1E-48 2.5E-53 397.6 13.0 300 171-475 130-430 (440)
13 KOG0728 26S proteasome regulat 100.0 4.4E-46 9.5E-51 372.1 21.5 255 223-477 139-394 (404)
14 KOG0729 26S proteasome regulat 100.0 2.8E-46 6E-51 376.2 19.6 266 213-478 159-425 (435)
15 KOG0652 26S proteasome regulat 100.0 2.9E-46 6.2E-51 375.2 18.9 256 219-474 159-415 (424)
16 KOG0733 Nuclear AAA ATPase (VC 100.0 2.1E-45 4.6E-50 402.7 20.6 228 224-454 183-414 (802)
17 PTZ00454 26S protease regulato 100.0 2.7E-42 5.9E-47 379.5 28.1 254 222-475 136-390 (398)
18 COG1223 Predicted ATPase (AAA+ 100.0 4.5E-43 9.7E-48 352.5 19.9 241 223-470 113-354 (368)
19 KOG0736 Peroxisome assembly fa 100.0 2.1E-42 4.6E-47 387.1 23.3 252 222-475 663-936 (953)
20 KOG0738 AAA+-type ATPase [Post 100.0 3E-42 6.4E-47 362.6 20.9 247 223-474 204-472 (491)
21 PRK03992 proteasome-activating 100.0 6.8E-41 1.5E-45 369.0 28.0 257 222-478 122-379 (389)
22 PF01434 Peptidase_M41: Peptid 100.0 1.8E-42 3.9E-47 351.8 14.2 210 460-678 1-213 (213)
23 PTZ00361 26 proteosome regulat 100.0 1.2E-40 2.7E-45 369.0 24.5 253 222-474 174-427 (438)
24 KOG0651 26S proteasome regulat 100.0 3.2E-40 6.9E-45 339.3 13.1 251 222-472 123-374 (388)
25 KOG0735 AAA+-type ATPase [Post 100.0 5.3E-39 1.2E-43 356.8 22.7 228 224-454 660-888 (952)
26 COG0464 SpoVK ATPases of the A 100.0 1.1E-38 2.3E-43 362.2 24.1 245 224-471 235-483 (494)
27 TIGR01242 26Sp45 26S proteasom 100.0 3.6E-38 7.9E-43 344.8 27.1 252 220-471 111-363 (364)
28 TIGR01243 CDC48 AAA family ATP 100.0 1.8E-38 4E-43 375.6 26.1 248 225-474 447-713 (733)
29 CHL00195 ycf46 Ycf46; Provisio 100.0 1.2E-37 2.5E-42 349.9 24.9 243 225-474 222-466 (489)
30 KOG0739 AAA+-type ATPase [Post 100.0 2.3E-38 5E-43 323.3 13.4 227 222-454 124-353 (439)
31 KOG0737 AAA+-type ATPase [Post 100.0 9.4E-37 2E-41 321.5 19.9 226 224-454 85-314 (386)
32 TIGR03689 pup_AAA proteasome A 100.0 6.9E-35 1.5E-39 327.3 24.7 256 220-477 171-484 (512)
33 KOG0730 AAA+-type ATPase [Post 100.0 3.6E-35 7.7E-40 327.0 19.9 346 226-594 180-539 (693)
34 KOG0741 AAA+-type ATPase [Post 100.0 1.5E-33 3.3E-38 305.3 16.0 280 223-503 211-531 (744)
35 TIGR01243 CDC48 AAA family ATP 100.0 7.5E-32 1.6E-36 319.4 28.9 250 225-477 172-441 (733)
36 PLN00020 ribulose bisphosphate 100.0 9.2E-32 2E-36 286.5 25.0 262 226-500 110-393 (413)
37 KOG0732 AAA+-type ATPase conta 100.0 9.2E-32 2E-36 314.6 18.9 252 224-478 258-532 (1080)
38 KOG0740 AAA+-type ATPase [Post 100.0 5.6E-30 1.2E-34 278.8 15.9 244 224-473 146-406 (428)
39 CHL00181 cbbX CbbX; Provisiona 99.9 4.3E-21 9.4E-26 203.6 20.5 213 230-454 22-257 (287)
40 TIGR02881 spore_V_K stage V sp 99.9 1E-20 2.3E-25 198.1 20.8 213 229-454 4-241 (261)
41 PF00004 AAA: ATPase family as 99.9 2.4E-21 5.3E-26 179.4 13.8 130 267-400 1-132 (132)
42 KOG0743 AAA+-type ATPase [Post 99.9 3.2E-21 7E-26 209.2 16.9 206 228-443 198-412 (457)
43 TIGR02880 cbbX_cfxQ probable R 99.9 1.1E-20 2.3E-25 200.5 20.0 212 231-454 22-256 (284)
44 KOG0742 AAA+-type ATPase [Post 99.8 2.3E-20 4.9E-25 198.3 18.4 233 226-469 350-610 (630)
45 KOG0735 AAA+-type ATPase [Post 99.8 1.1E-18 2.3E-23 195.8 22.5 263 231-504 408-685 (952)
46 PF05496 RuvB_N: Holliday junc 99.8 4.5E-19 9.7E-24 179.0 17.5 192 224-447 17-225 (233)
47 PRK00080 ruvB Holliday junctio 99.8 1.4E-18 3E-23 187.9 20.4 220 223-471 17-250 (328)
48 COG0464 SpoVK ATPases of the A 99.8 2.4E-18 5.2E-23 195.9 21.2 220 250-474 4-229 (494)
49 KOG0736 Peroxisome assembly fa 99.8 4.7E-18 1E-22 192.3 22.3 311 260-594 427-776 (953)
50 TIGR00635 ruvB Holliday juncti 99.8 3.1E-18 6.7E-23 182.7 19.0 210 229-470 2-228 (305)
51 KOG0744 AAA+-type ATPase [Post 99.8 2.3E-18 5E-23 179.1 14.0 237 230-470 141-413 (423)
52 COG2256 MGS1 ATPase related to 99.8 2.1E-17 4.6E-22 177.1 19.6 205 225-472 18-239 (436)
53 COG2255 RuvB Holliday junction 99.8 1.6E-17 3.4E-22 170.9 17.2 217 225-473 20-253 (332)
54 TIGR02902 spore_lonB ATP-depen 99.8 1.1E-17 2.4E-22 191.6 17.9 255 182-470 9-331 (531)
55 TIGR02639 ClpA ATP-dependent C 99.8 7.7E-18 1.7E-22 199.9 17.1 225 226-474 177-432 (731)
56 TIGR00763 lon ATP-dependent pr 99.7 3E-17 6.5E-22 195.9 17.7 164 231-414 320-505 (775)
57 PRK11034 clpA ATP-dependent Cl 99.7 3E-17 6.5E-22 193.6 16.6 225 227-475 182-437 (758)
58 TIGR00362 DnaA chromosomal rep 99.7 8.4E-16 1.8E-20 170.9 21.9 242 225-502 104-358 (405)
59 PRK00149 dnaA chromosomal repl 99.7 6.4E-16 1.4E-20 174.2 20.7 244 225-502 116-370 (450)
60 TIGR02928 orc1/cdc6 family rep 99.7 1.8E-15 3.9E-20 165.3 22.1 222 228-471 12-274 (365)
61 PRK04195 replication factor C 99.7 8.1E-16 1.8E-20 174.7 19.7 212 220-468 3-222 (482)
62 KOG2004 Mitochondrial ATP-depe 99.7 8.2E-17 1.8E-21 181.2 11.3 175 219-415 399-597 (906)
63 PRK14956 DNA polymerase III su 99.7 7.6E-16 1.6E-20 171.9 18.9 213 221-468 8-243 (484)
64 PRK14088 dnaA chromosomal repl 99.7 1.7E-15 3.8E-20 169.9 21.2 244 225-502 99-355 (440)
65 PRK13342 recombination factor 99.7 1.4E-15 3E-20 169.6 18.7 203 223-472 4-220 (413)
66 PRK07003 DNA polymerase III su 99.7 1.5E-15 3.3E-20 175.3 19.2 210 221-465 6-238 (830)
67 PRK14962 DNA polymerase III su 99.7 1.5E-15 3.2E-20 171.3 18.3 206 223-469 6-240 (472)
68 PRK12323 DNA polymerase III su 99.7 9.6E-16 2.1E-20 175.0 16.2 210 222-466 7-244 (700)
69 PRK12402 replication factor C 99.7 5.1E-15 1.1E-19 159.6 21.1 214 219-469 3-247 (337)
70 COG0466 Lon ATP-dependent Lon 99.7 2.6E-16 5.6E-21 178.3 11.3 177 219-415 311-509 (782)
71 PRK00411 cdc6 cell division co 99.7 6.1E-15 1.3E-19 162.9 21.5 223 228-471 27-282 (394)
72 PRK14961 DNA polymerase III su 99.7 3.7E-15 7.9E-20 163.6 19.4 213 222-469 7-242 (363)
73 PRK14960 DNA polymerase III su 99.6 2.9E-15 6.2E-20 171.5 18.5 206 222-468 6-240 (702)
74 PRK14086 dnaA chromosomal repl 99.6 7.1E-15 1.5E-19 168.1 21.5 245 225-502 282-537 (617)
75 PRK06645 DNA polymerase III su 99.6 4.9E-15 1.1E-19 167.9 19.5 216 221-468 11-253 (507)
76 PRK14958 DNA polymerase III su 99.6 3.4E-15 7.3E-20 170.0 17.9 207 221-468 6-241 (509)
77 PRK06893 DNA replication initi 99.6 1.2E-14 2.6E-19 149.6 20.0 213 223-468 8-227 (229)
78 TIGR03345 VI_ClpV1 type VI sec 99.6 5.3E-15 1.1E-19 177.5 19.7 218 226-468 182-428 (852)
79 KOG2028 ATPase related to the 99.6 4.6E-15 1E-19 156.5 15.3 206 224-470 131-367 (554)
80 PHA02544 44 clamp loader, smal 99.6 8.1E-15 1.8E-19 157.3 17.5 208 219-466 9-226 (316)
81 PRK07994 DNA polymerase III su 99.6 9.8E-15 2.1E-19 168.9 19.1 205 223-468 8-241 (647)
82 PLN03025 replication factor C 99.6 1.1E-14 2.3E-19 157.1 18.0 204 221-467 3-219 (319)
83 PRK14949 DNA polymerase III su 99.6 1.2E-14 2.5E-19 170.8 19.5 196 222-448 7-225 (944)
84 TIGR03420 DnaA_homol_Hda DnaA 99.6 1.7E-14 3.8E-19 146.9 18.4 206 225-468 9-225 (226)
85 PRK08691 DNA polymerase III su 99.6 9.6E-15 2.1E-19 168.5 17.6 212 222-468 7-241 (709)
86 PRK08903 DnaA regulatory inact 99.6 2.4E-14 5.3E-19 146.6 18.9 204 223-469 10-224 (227)
87 PRK14087 dnaA chromosomal repl 99.6 6.1E-15 1.3E-19 165.8 15.2 300 227-564 111-427 (450)
88 PRK14964 DNA polymerase III su 99.6 1.5E-14 3.2E-19 163.0 18.2 205 223-468 5-238 (491)
89 PRK14963 DNA polymerase III su 99.6 2.3E-14 4.9E-19 163.0 19.8 204 223-468 6-237 (504)
90 PRK12422 chromosomal replicati 99.6 4.7E-14 1E-18 158.3 21.4 230 225-473 105-345 (445)
91 PRK10865 protein disaggregatio 99.6 7.3E-15 1.6E-19 176.7 15.9 167 226-417 173-357 (857)
92 PRK14951 DNA polymerase III su 99.6 2E-14 4.3E-19 166.0 18.5 213 221-468 6-246 (618)
93 CHL00095 clpC Clp protease ATP 99.6 2.2E-14 4.7E-19 172.5 19.2 163 226-413 174-353 (821)
94 PRK05563 DNA polymerase III su 99.6 3.3E-14 7.2E-19 163.8 19.6 204 223-467 8-240 (559)
95 PRK07940 DNA polymerase III su 99.6 2.7E-14 6E-19 157.7 17.9 185 229-443 3-214 (394)
96 PRK13341 recombination factor 99.6 4.1E-14 8.9E-19 166.5 20.4 212 222-471 19-247 (725)
97 TIGR02397 dnaX_nterm DNA polym 99.6 3.8E-14 8.2E-19 154.2 18.6 208 221-469 4-240 (355)
98 PRK14969 DNA polymerase III su 99.6 3.1E-14 6.7E-19 163.0 18.0 212 222-468 7-241 (527)
99 PRK08084 DNA replication initi 99.6 1.7E-13 3.8E-18 141.6 20.7 207 224-468 15-233 (235)
100 PRK05342 clpX ATP-dependent pr 99.6 6.7E-14 1.5E-18 155.4 18.7 180 229-411 68-322 (412)
101 PRK14957 DNA polymerase III su 99.6 7.3E-14 1.6E-18 159.4 19.0 206 222-468 7-241 (546)
102 PRK08727 hypothetical protein; 99.6 1.6E-13 3.4E-18 141.7 19.8 211 223-470 11-230 (233)
103 PRK14959 DNA polymerase III su 99.6 5.9E-14 1.3E-18 161.3 17.6 206 222-468 7-241 (624)
104 TIGR03346 chaperone_ClpB ATP-d 99.6 5.5E-14 1.2E-18 169.6 18.0 202 226-452 168-397 (852)
105 COG0593 DnaA ATPase involved i 99.6 1.6E-13 3.5E-18 150.4 19.8 228 224-476 80-318 (408)
106 PRK07764 DNA polymerase III su 99.5 9.5E-14 2.1E-18 165.3 18.4 212 223-468 7-243 (824)
107 PRK07133 DNA polymerase III su 99.5 1.2E-13 2.6E-18 160.9 18.5 213 221-468 8-240 (725)
108 PF00308 Bac_DnaA: Bacterial d 99.5 1.2E-13 2.5E-18 141.5 16.4 202 226-451 3-216 (219)
109 PTZ00112 origin recognition co 99.5 2.1E-13 4.6E-18 158.1 19.9 219 229-472 753-1007(1164)
110 PRK14952 DNA polymerase III su 99.5 1.3E-13 2.9E-18 158.6 18.3 212 223-468 5-241 (584)
111 PRK09111 DNA polymerase III su 99.5 1.9E-13 4E-18 158.1 19.2 214 220-468 13-254 (598)
112 PRK14965 DNA polymerase III su 99.5 1.3E-13 2.7E-18 159.6 17.4 205 222-467 7-240 (576)
113 TIGR02640 gas_vesic_GvpN gas v 99.5 4.1E-13 8.9E-18 141.0 19.7 188 266-474 23-260 (262)
114 PRK14953 DNA polymerase III su 99.5 2.3E-13 5E-18 154.2 18.9 213 221-468 6-241 (486)
115 PRK00440 rfc replication facto 99.5 4.5E-13 9.7E-18 143.3 20.1 208 219-469 5-224 (319)
116 PRK14970 DNA polymerase III su 99.5 1.2E-13 2.5E-18 151.8 15.8 214 221-469 7-231 (367)
117 PRK06620 hypothetical protein; 99.5 3.4E-13 7.3E-18 137.6 17.9 199 224-468 9-213 (214)
118 PRK05896 DNA polymerase III su 99.5 1.3E-13 2.9E-18 157.7 16.6 213 220-467 5-240 (605)
119 PRK10787 DNA-binding ATP-depen 99.5 1E-13 2.3E-18 164.8 16.4 167 228-415 319-507 (784)
120 PRK08451 DNA polymerase III su 99.5 3.5E-13 7.5E-18 153.3 19.2 205 222-467 5-238 (535)
121 PRK05642 DNA replication initi 99.5 5.7E-13 1.2E-17 137.7 19.2 213 223-468 11-232 (234)
122 PRK06647 DNA polymerase III su 99.5 4.6E-13 1E-17 154.1 19.0 211 223-468 8-241 (563)
123 PRK14955 DNA polymerase III su 99.5 3.1E-13 6.7E-18 150.1 17.0 216 222-468 7-254 (397)
124 TIGR00390 hslU ATP-dependent p 99.5 5.3E-13 1.1E-17 146.4 18.0 176 232-411 13-343 (441)
125 COG2812 DnaX DNA polymerase II 99.5 2.5E-13 5.5E-18 152.8 15.3 208 223-465 8-238 (515)
126 KOG0989 Replication factor C, 99.5 3.1E-13 6.8E-18 140.8 14.5 196 219-449 24-236 (346)
127 PRK05201 hslU ATP-dependent pr 99.5 7E-13 1.5E-17 145.4 18.0 176 232-411 16-345 (443)
128 COG1474 CDC6 Cdc6-related prot 99.5 1.9E-12 4.2E-17 141.8 20.6 218 229-471 15-265 (366)
129 PRK06305 DNA polymerase III su 99.5 1.1E-12 2.4E-17 147.7 19.1 207 221-468 7-243 (451)
130 PRK13407 bchI magnesium chelat 99.5 2.5E-13 5.5E-18 146.8 13.2 219 226-473 3-308 (334)
131 TIGR00382 clpX endopeptidase C 99.5 9E-13 2E-17 145.9 17.8 179 232-412 78-329 (413)
132 PRK14948 DNA polymerase III su 99.5 1.2E-12 2.5E-17 152.4 19.2 208 223-466 8-240 (620)
133 TIGR02903 spore_lon_C ATP-depe 99.5 1.9E-12 4.1E-17 150.9 20.7 218 225-470 148-429 (615)
134 PRK14954 DNA polymerase III su 99.5 1.7E-12 3.8E-17 150.4 18.6 215 223-468 8-254 (620)
135 PRK14950 DNA polymerase III su 99.4 2.4E-12 5.1E-17 149.6 19.5 212 222-468 7-242 (585)
136 COG1224 TIP49 DNA helicase TIP 99.4 2.7E-12 5.9E-17 135.8 17.5 129 324-472 292-433 (450)
137 CHL00081 chlI Mg-protoporyphyr 99.4 9.1E-13 2E-17 143.0 13.6 224 225-476 11-327 (350)
138 PF05673 DUF815: Protein of un 99.4 4.2E-12 9E-17 130.3 17.4 193 223-445 19-243 (249)
139 COG3829 RocR Transcriptional r 99.4 1.9E-13 4.1E-18 152.0 7.8 217 226-469 240-496 (560)
140 PRK11034 clpA ATP-dependent Cl 99.4 1.2E-12 2.6E-17 154.9 14.3 165 232-415 459-667 (758)
141 TIGR02639 ClpA ATP-dependent C 99.4 6.7E-12 1.5E-16 149.5 19.1 165 231-415 454-663 (731)
142 PRK09087 hypothetical protein; 99.4 1.2E-11 2.6E-16 127.3 18.1 204 223-471 13-222 (226)
143 TIGR01650 PD_CobS cobaltochela 99.4 2.1E-12 4.5E-17 138.4 12.5 207 264-501 64-317 (327)
144 TIGR02030 BchI-ChlI magnesium 99.4 4.7E-12 1E-16 137.2 15.3 215 229-474 2-312 (337)
145 PRK14971 DNA polymerase III su 99.4 7.6E-12 1.6E-16 145.6 18.0 212 222-468 8-243 (614)
146 cd00009 AAA The AAA+ (ATPases 99.4 1.1E-11 2.4E-16 114.8 13.5 123 264-399 19-150 (151)
147 TIGR02442 Cob-chelat-sub cobal 99.3 8.5E-12 1.9E-16 146.1 15.3 213 229-473 2-306 (633)
148 COG0542 clpA ATP-binding subun 99.3 1.2E-10 2.6E-15 136.1 22.5 166 224-413 163-345 (786)
149 COG2204 AtoC Response regulato 99.3 5.5E-12 1.2E-16 140.3 10.7 212 227-465 137-385 (464)
150 COG3604 FhlA Transcriptional r 99.3 9.9E-12 2.2E-16 136.8 11.5 200 227-451 219-456 (550)
151 PRK15424 propionate catabolism 99.3 8.6E-12 1.9E-16 142.6 11.5 213 228-464 216-478 (538)
152 PHA02244 ATPase-like protein 99.3 7.1E-11 1.5E-15 128.1 17.8 148 228-403 94-263 (383)
153 TIGR03345 VI_ClpV1 type VI sec 99.3 5.4E-11 1.2E-15 143.3 18.2 195 231-448 566-827 (852)
154 TIGR02329 propionate_PrpR prop 99.3 1.8E-11 4E-16 139.9 12.4 214 228-466 209-465 (526)
155 COG0714 MoxR-like ATPases [Gen 99.3 1.4E-10 2.9E-15 125.9 17.6 132 266-413 45-201 (329)
156 COG1221 PspF Transcriptional r 99.3 2.8E-11 6.1E-16 132.6 11.9 200 226-453 73-311 (403)
157 TIGR03346 chaperone_ClpB ATP-d 99.2 1.2E-10 2.6E-15 140.9 18.2 202 231-451 565-825 (852)
158 TIGR00368 Mg chelatase-related 99.2 1.1E-10 2.4E-15 132.6 16.9 213 227-469 188-497 (499)
159 PRK10865 protein disaggregatio 99.2 1.8E-10 3.9E-15 139.0 18.7 168 230-416 567-781 (857)
160 PRK09112 DNA polymerase III su 99.2 2.2E-10 4.9E-15 125.1 17.7 190 226-447 18-244 (351)
161 TIGR01817 nifA Nif-specific re 99.2 3.5E-11 7.5E-16 138.7 11.9 213 225-466 190-440 (534)
162 PRK05022 anaerobic nitric oxid 99.2 5.9E-11 1.3E-15 136.0 12.7 199 229-452 185-421 (509)
163 TIGR03015 pepcterm_ATPase puta 99.2 7E-10 1.5E-14 116.0 19.7 190 266-471 45-266 (269)
164 PRK13531 regulatory ATPase Rav 99.2 4.8E-10 1E-14 125.5 18.8 213 232-475 21-287 (498)
165 CHL00095 clpC Clp protease ATP 99.2 4.3E-10 9.4E-15 135.6 19.3 166 231-415 509-733 (821)
166 KOG1969 DNA replication checkp 99.2 4.3E-10 9.3E-15 128.2 17.5 212 217-454 257-518 (877)
167 smart00350 MCM minichromosome 99.2 2.3E-10 5.1E-15 131.0 15.6 221 232-471 204-504 (509)
168 PRK11388 DNA-binding transcrip 99.2 8E-11 1.7E-15 138.5 12.1 214 227-468 321-568 (638)
169 TIGR00764 lon_rel lon-related 99.2 4.2E-10 9.1E-15 131.1 17.8 102 369-472 268-392 (608)
170 TIGR02974 phageshock_pspF psp 99.2 2E-10 4.3E-15 124.6 14.0 191 233-451 1-233 (329)
171 PRK10820 DNA-binding transcrip 99.2 1.3E-10 2.8E-15 133.4 13.2 212 226-464 199-447 (520)
172 PRK11608 pspF phage shock prot 99.2 2.3E-10 5E-15 124.0 14.2 195 229-451 4-240 (326)
173 PRK07471 DNA polymerase III su 99.2 6.1E-10 1.3E-14 122.3 17.3 186 225-444 13-239 (365)
174 KOG1942 DNA helicase, TBP-inte 99.2 8.2E-10 1.8E-14 114.4 16.9 131 323-473 296-440 (456)
175 COG0542 clpA ATP-binding subun 99.2 1.4E-10 3E-15 135.5 12.7 162 231-415 491-706 (786)
176 smart00382 AAA ATPases associa 99.2 1.8E-10 3.8E-15 105.4 10.8 126 264-401 2-147 (148)
177 TIGR00678 holB DNA polymerase 99.2 3.6E-10 7.7E-15 112.5 13.7 144 262-434 12-183 (188)
178 PF05621 TniB: Bacterial TniB 99.2 1.6E-09 3.5E-14 114.5 18.6 219 230-467 33-285 (302)
179 PRK15429 formate hydrogenlyase 99.1 6.3E-10 1.4E-14 132.0 16.0 200 227-451 372-609 (686)
180 TIGR02031 BchD-ChlD magnesium 99.1 9.1E-10 2E-14 128.0 16.8 189 266-473 18-260 (589)
181 PF07728 AAA_5: AAA domain (dy 99.1 6.7E-11 1.4E-15 111.7 5.7 113 266-392 1-139 (139)
182 PF06068 TIP49: TIP49 C-termin 99.1 1.2E-09 2.5E-14 117.8 15.6 66 229-301 22-89 (398)
183 PRK11331 5-methylcytosine-spec 99.1 6.2E-10 1.3E-14 123.7 13.8 141 230-400 174-357 (459)
184 COG2607 Predicted ATPase (AAA+ 99.1 4.5E-09 9.7E-14 106.7 18.3 168 224-421 53-246 (287)
185 TIGR00602 rad24 checkpoint pro 99.1 1.2E-09 2.6E-14 126.9 16.1 261 217-503 70-391 (637)
186 PRK05564 DNA polymerase III su 99.1 1E-09 2.2E-14 118.3 14.3 170 229-435 2-183 (313)
187 PF01078 Mg_chelatase: Magnesi 99.1 1.1E-10 2.4E-15 117.5 6.3 142 229-403 1-204 (206)
188 KOG0741 AAA+-type ATPase [Post 99.1 1.4E-09 3E-14 120.1 15.2 160 241-412 521-684 (744)
189 COG1219 ClpX ATP-dependent pro 99.1 3.7E-10 8.1E-15 118.3 8.9 132 231-364 61-203 (408)
190 COG0470 HolB ATPase involved i 99.1 3.7E-09 8E-14 113.2 16.5 148 231-409 1-176 (325)
191 PRK09862 putative ATP-dependen 99.1 2.2E-09 4.7E-14 121.9 15.3 209 228-469 188-490 (506)
192 PRK07399 DNA polymerase III su 99.0 3.8E-09 8.3E-14 113.9 16.3 183 229-445 2-223 (314)
193 PRK04132 replication factor C 99.0 3.4E-09 7.3E-14 126.2 16.8 171 266-467 566-750 (846)
194 KOG0991 Replication factor C, 99.0 1.4E-09 3.1E-14 109.7 10.6 204 220-467 16-233 (333)
195 PRK08116 hypothetical protein; 99.0 3.1E-09 6.6E-14 112.2 13.2 129 264-411 114-257 (268)
196 PF00158 Sigma54_activat: Sigm 99.0 1.4E-09 3E-14 107.1 9.7 122 233-378 1-143 (168)
197 PRK08058 DNA polymerase III su 99.0 7.2E-09 1.6E-13 112.5 15.7 149 229-412 3-180 (329)
198 smart00763 AAA_PrkA PrkA AAA d 99.0 3.6E-09 7.9E-14 114.8 12.9 83 229-318 48-143 (361)
199 PRK05707 DNA polymerase III su 99.0 6E-09 1.3E-13 113.0 14.2 150 261-435 19-196 (328)
200 COG0606 Predicted ATPase with 99.0 1.1E-09 2.4E-14 120.9 8.4 210 227-469 175-483 (490)
201 PF07724 AAA_2: AAA domain (Cd 99.0 1.5E-09 3.2E-14 107.2 7.9 110 265-381 4-132 (171)
202 COG1220 HslU ATP-dependent pro 99.0 3.9E-09 8.4E-14 111.5 11.4 84 324-411 251-346 (444)
203 TIGR02915 PEP_resp_reg putativ 98.9 5E-09 1.1E-13 117.8 11.5 207 229-464 137-382 (445)
204 COG1239 ChlI Mg-chelatase subu 98.9 6.8E-09 1.5E-13 113.3 11.5 160 227-415 13-233 (423)
205 PRK08181 transposase; Validate 98.9 2.4E-08 5.2E-13 105.3 14.8 98 265-378 107-208 (269)
206 PRK12377 putative replication 98.9 2.2E-08 4.8E-13 104.4 13.3 99 265-378 102-205 (248)
207 PTZ00111 DNA replication licen 98.9 3.7E-08 7.9E-13 117.1 16.0 128 263-409 491-652 (915)
208 PRK13765 ATP-dependent proteas 98.8 1.5E-08 3.4E-13 118.0 11.8 100 369-470 277-399 (637)
209 PRK10923 glnG nitrogen regulat 98.8 3.6E-08 7.7E-13 111.8 14.4 209 229-468 136-385 (469)
210 PRK07952 DNA replication prote 98.8 3.9E-08 8.5E-13 102.3 13.5 131 226-378 67-204 (244)
211 KOG1514 Origin recognition com 98.8 1.3E-07 2.9E-12 108.0 17.8 197 266-475 424-659 (767)
212 PRK11361 acetoacetate metaboli 98.8 6.4E-08 1.4E-12 109.1 15.2 208 229-467 141-389 (457)
213 PF14532 Sigma54_activ_2: Sigm 98.8 4.5E-09 9.8E-14 99.6 4.6 106 234-378 1-109 (138)
214 KOG0745 Putative ATP-dependent 98.8 1.9E-08 4.1E-13 109.2 9.7 98 266-363 228-331 (564)
215 PRK06526 transposase; Provisio 98.8 2.9E-08 6.3E-13 104.0 10.6 100 264-379 98-201 (254)
216 PRK06964 DNA polymerase III su 98.8 3.5E-08 7.5E-13 107.4 11.3 134 261-413 18-203 (342)
217 PF13177 DNA_pol3_delta2: DNA 98.8 2.3E-08 5E-13 97.7 8.8 133 235-400 1-160 (162)
218 KOG2680 DNA helicase TIP49, TB 98.8 2.4E-07 5.2E-12 96.7 16.2 131 324-474 289-432 (454)
219 PRK06835 DNA replication prote 98.7 8.6E-08 1.9E-12 104.0 12.7 112 265-393 184-306 (329)
220 KOG0990 Replication factor C, 98.7 1.2E-07 2.6E-12 100.1 12.9 198 218-452 28-238 (360)
221 PF07726 AAA_3: ATPase family 98.7 8.2E-09 1.8E-13 96.4 3.6 111 266-392 1-129 (131)
222 PRK15115 response regulator Gl 98.7 8.6E-08 1.9E-12 107.8 12.3 206 232-468 135-381 (444)
223 PRK08939 primosomal protein Dn 98.7 1.5E-07 3.3E-12 101.1 13.0 101 263-379 155-261 (306)
224 TIGR01818 ntrC nitrogen regula 98.7 1.3E-07 2.7E-12 107.0 12.8 208 230-468 133-381 (463)
225 COG3283 TyrR Transcriptional r 98.7 9.5E-08 2.1E-12 101.8 10.6 211 226-465 199-443 (511)
226 PF01637 Arch_ATPase: Archaeal 98.7 2.2E-07 4.8E-12 93.8 13.0 183 234-441 2-232 (234)
227 PRK06871 DNA polymerase III su 98.7 2.7E-07 5.8E-12 99.8 13.6 134 262-414 22-179 (325)
228 PRK08769 DNA polymerase III su 98.6 4.9E-07 1.1E-11 97.7 15.1 153 261-437 23-203 (319)
229 PRK09183 transposase/IS protei 98.6 2.3E-07 5E-12 97.5 12.1 70 265-335 103-176 (259)
230 KOG2227 Pre-initiation complex 98.6 7.2E-07 1.6E-11 98.3 16.2 205 230-456 149-384 (529)
231 PRK13406 bchD magnesium chelat 98.6 1.7E-07 3.8E-12 108.5 12.0 189 265-473 26-252 (584)
232 PRK07993 DNA polymerase III su 98.6 3.1E-07 6.6E-12 100.0 13.1 152 261-435 21-197 (334)
233 COG1484 DnaC DNA replication p 98.6 3.4E-07 7.3E-12 96.0 12.7 70 264-335 105-179 (254)
234 KOG2035 Replication factor C, 98.6 1.2E-06 2.6E-11 90.9 16.3 184 220-434 2-220 (351)
235 PF03215 Rad17: Rad17 cell cyc 98.6 4.7E-07 1E-11 103.6 14.8 212 217-452 5-269 (519)
236 PRK10365 transcriptional regul 98.6 2E-07 4.4E-12 104.5 10.9 205 232-467 140-385 (441)
237 COG3284 AcoR Transcriptional a 98.6 7.3E-08 1.6E-12 109.6 6.9 204 235-469 317-555 (606)
238 PF13173 AAA_14: AAA domain 98.6 5E-07 1.1E-11 84.5 10.9 118 265-405 3-126 (128)
239 PF01695 IstB_IS21: IstB-like 98.5 2.1E-07 4.5E-12 92.5 8.6 99 264-378 47-149 (178)
240 KOG1051 Chaperone HSP104 and r 98.5 6.8E-07 1.5E-11 106.4 12.6 128 231-378 562-710 (898)
241 PRK08699 DNA polymerase III su 98.5 7E-07 1.5E-11 96.9 11.4 132 262-412 19-183 (325)
242 PRK06921 hypothetical protein; 98.5 1E-06 2.3E-11 92.9 12.2 68 264-334 117-188 (266)
243 PRK06090 DNA polymerase III su 98.5 2.8E-06 6.1E-11 91.8 15.0 130 261-412 22-178 (319)
244 PF13401 AAA_22: AAA domain; P 98.4 8.6E-07 1.9E-11 82.1 7.7 97 265-376 5-125 (131)
245 PF03969 AFG1_ATPase: AFG1-lik 98.3 2.4E-06 5.1E-11 94.0 10.2 140 261-427 59-206 (362)
246 PF12775 AAA_7: P-loop contain 98.3 2.4E-06 5.3E-11 90.5 9.9 164 227-415 6-194 (272)
247 KOG1970 Checkpoint RAD17-RFC c 98.3 8.3E-06 1.8E-10 91.5 14.3 211 219-451 70-320 (634)
248 cd01120 RecA-like_NTPases RecA 98.3 3E-06 6.5E-11 80.4 9.1 110 267-380 2-138 (165)
249 COG1241 MCM2 Predicted ATPase 98.3 1.9E-06 4.1E-11 100.5 8.9 220 231-472 286-593 (682)
250 PF05729 NACHT: NACHT domain 98.3 1.1E-05 2.5E-10 77.0 12.6 140 266-416 2-165 (166)
251 PF12774 AAA_6: Hydrolytic ATP 98.3 9.3E-06 2E-10 84.0 12.6 124 266-410 34-176 (231)
252 PF06480 FtsH_ext: FtsH Extrac 98.2 9.7E-07 2.1E-11 79.2 4.6 95 65-163 2-108 (110)
253 COG3267 ExeA Type II secretory 98.2 6.3E-05 1.4E-09 77.8 17.0 184 266-465 53-267 (269)
254 PF00493 MCM: MCM2/3/5 family 98.2 5.7E-07 1.2E-11 97.8 1.8 216 232-470 25-325 (331)
255 TIGR02237 recomb_radB DNA repa 98.1 9.2E-06 2E-10 82.0 9.6 115 260-377 8-148 (209)
256 KOG0480 DNA replication licens 98.1 2.2E-05 4.7E-10 89.3 13.1 222 229-471 343-643 (764)
257 COG1485 Predicted ATPase [Gene 98.1 1.4E-05 2.9E-10 86.1 10.3 136 262-425 63-207 (367)
258 KOG0478 DNA replication licens 98.1 4.9E-05 1.1E-09 87.2 14.9 157 232-405 430-617 (804)
259 PLN03210 Resistant to P. syrin 98.0 5.6E-05 1.2E-09 95.1 15.9 178 226-436 179-389 (1153)
260 PRK05917 DNA polymerase III su 98.0 2.9E-05 6.3E-10 82.7 11.0 122 261-401 16-154 (290)
261 PF00931 NB-ARC: NB-ARC domain 98.0 7.8E-05 1.7E-09 78.6 14.2 172 242-443 4-202 (287)
262 PF13191 AAA_16: AAA ATPase do 98.0 1.1E-05 2.4E-10 79.0 6.3 59 233-300 2-63 (185)
263 cd01124 KaiC KaiC is a circadi 98.0 5.4E-05 1.2E-09 74.6 10.9 70 267-336 2-108 (187)
264 TIGR02688 conserved hypothetic 97.9 0.00021 4.4E-09 79.5 15.7 75 238-335 194-272 (449)
265 PRK11823 DNA repair protein Ra 97.9 5.7E-05 1.2E-09 85.5 11.5 78 260-337 76-170 (446)
266 KOG2383 Predicted ATPase [Gene 97.9 9.5E-05 2.1E-09 80.5 11.9 161 261-448 111-297 (467)
267 KOG0482 DNA replication licens 97.9 4.3E-05 9.3E-10 84.9 8.7 223 232-471 343-638 (721)
268 cd01121 Sms Sms (bacterial rad 97.8 7.6E-05 1.7E-09 82.5 10.6 78 260-337 78-172 (372)
269 PHA00729 NTP-binding motif con 97.8 5.4E-05 1.2E-09 77.8 8.2 24 266-289 19-42 (226)
270 PRK07276 DNA polymerase III su 97.8 0.00048 1E-08 73.6 15.4 128 262-411 22-172 (290)
271 PRK09361 radB DNA repair and r 97.8 0.00011 2.3E-09 75.3 10.1 116 260-377 19-160 (225)
272 PRK07132 DNA polymerase III su 97.8 0.00076 1.7E-08 72.5 16.7 127 262-412 16-160 (299)
273 TIGR01618 phage_P_loop phage n 97.8 7.2E-05 1.6E-09 76.8 7.9 73 263-337 11-95 (220)
274 KOG2170 ATPase of the AAA+ sup 97.8 0.0013 2.7E-08 69.7 17.1 126 232-378 83-224 (344)
275 PF00910 RNA_helicase: RNA hel 97.7 6.6E-05 1.4E-09 68.2 6.7 23 267-289 1-23 (107)
276 PRK05818 DNA polymerase III su 97.7 0.00017 3.7E-09 75.6 10.1 121 262-401 5-147 (261)
277 KOG1968 Replication factor C, 97.7 0.00011 2.5E-09 88.3 9.5 211 219-450 308-535 (871)
278 PRK06067 flagellar accessory p 97.7 0.00021 4.6E-09 73.6 10.2 40 260-299 21-63 (234)
279 cd01394 radB RadB. The archaea 97.7 0.0002 4.4E-09 72.8 9.9 141 260-402 15-188 (218)
280 TIGR02012 tigrfam_recA protein 97.7 0.00029 6.2E-09 76.3 11.2 118 260-377 51-190 (321)
281 COG1618 Predicted nucleotide k 97.7 0.00024 5.2E-09 68.9 9.2 26 263-288 4-29 (179)
282 PF05707 Zot: Zonular occluden 97.6 8.3E-05 1.8E-09 74.7 6.4 124 267-402 3-147 (193)
283 PRK08533 flagellar accessory p 97.6 0.00035 7.6E-09 72.3 11.1 76 261-336 21-130 (230)
284 PRK00131 aroK shikimate kinase 97.6 0.00017 3.7E-09 69.9 8.3 39 263-303 3-41 (175)
285 KOG1051 Chaperone HSP104 and r 97.6 0.00074 1.6E-08 81.1 14.4 199 230-453 185-412 (898)
286 TIGR02858 spore_III_AA stage I 97.6 0.0002 4.4E-09 75.8 8.7 113 265-399 112-256 (270)
287 COG1373 Predicted ATPase (AAA+ 97.6 0.0024 5.3E-08 71.4 17.5 123 266-408 39-161 (398)
288 KOG2228 Origin recognition com 97.6 0.00043 9.2E-09 74.2 10.8 160 232-414 25-219 (408)
289 cd03283 ABC_MutS-like MutS-lik 97.6 0.0003 6.5E-09 71.2 9.3 105 265-383 26-152 (199)
290 PRK08118 topology modulation p 97.5 0.00013 2.9E-09 71.7 6.0 33 266-298 3-35 (167)
291 TIGR00416 sms DNA repair prote 97.5 0.00049 1.1E-08 78.2 11.4 78 260-337 90-184 (454)
292 PRK15455 PrkA family serine pr 97.5 9.7E-05 2.1E-09 84.6 5.7 63 229-297 74-137 (644)
293 COG1116 TauB ABC-type nitrate/ 97.5 8E-05 1.7E-09 77.0 4.4 22 266-287 31-52 (248)
294 KOG2543 Origin recognition com 97.5 0.0014 3E-08 71.4 13.7 162 230-414 5-193 (438)
295 cd00983 recA RecA is a bacter 97.5 0.00046 9.9E-09 74.8 10.0 117 261-377 52-190 (325)
296 PF13207 AAA_17: AAA domain; P 97.5 7.9E-05 1.7E-09 68.2 3.6 30 267-296 2-31 (121)
297 PRK14722 flhF flagellar biosyn 97.5 0.00033 7.1E-09 77.3 8.9 111 262-387 135-267 (374)
298 COG4650 RtcR Sigma54-dependent 97.5 0.00041 8.8E-09 72.8 8.8 76 261-336 205-295 (531)
299 PRK05973 replicative DNA helic 97.5 0.00079 1.7E-08 70.0 10.9 40 260-299 60-102 (237)
300 PF07693 KAP_NTPase: KAP famil 97.4 0.0031 6.6E-08 67.8 15.6 78 322-415 171-264 (325)
301 COG5271 MDN1 AAA ATPase contai 97.4 0.00038 8.2E-09 85.7 9.0 135 264-416 1543-1705(4600)
302 PF14516 AAA_35: AAA-like doma 97.4 0.0079 1.7E-07 65.7 18.6 161 266-438 33-234 (331)
303 PRK04296 thymidine kinase; Pro 97.4 0.00043 9.4E-09 69.4 8.1 70 266-335 4-90 (190)
304 KOG0477 DNA replication licens 97.4 0.00079 1.7E-08 76.7 10.7 62 232-295 450-513 (854)
305 PF06745 KaiC: KaiC; InterPro 97.4 0.0011 2.3E-08 68.0 10.7 108 260-377 15-159 (226)
306 cd01393 recA_like RecA is a b 97.4 0.00047 1E-08 70.3 8.1 117 260-377 15-167 (226)
307 PF13671 AAA_33: AAA domain; P 97.4 0.00057 1.2E-08 64.2 8.0 37 267-305 2-38 (143)
308 PRK00771 signal recognition pa 97.4 0.0033 7.2E-08 71.0 15.3 39 262-300 93-134 (437)
309 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00077 1.7E-08 69.2 9.5 117 260-377 15-168 (235)
310 TIGR03877 thermo_KaiC_1 KaiC d 97.4 0.0016 3.4E-08 67.6 11.8 40 260-299 17-59 (237)
311 PRK13949 shikimate kinase; Pro 97.4 0.0011 2.4E-08 65.3 10.1 31 266-296 3-33 (169)
312 PRK09376 rho transcription ter 97.4 0.00059 1.3E-08 75.4 8.7 71 267-337 172-270 (416)
313 PRK10536 hypothetical protein; 97.4 0.00084 1.8E-08 70.3 9.4 45 229-287 53-97 (262)
314 PRK07261 topology modulation p 97.3 0.0003 6.5E-09 69.3 5.7 32 267-298 3-34 (171)
315 PRK12339 2-phosphoglycerate ki 97.3 0.0027 5.8E-08 64.3 12.6 186 264-473 3-193 (197)
316 PRK14532 adenylate kinase; Pro 97.3 0.00057 1.2E-08 67.9 7.7 36 266-303 2-37 (188)
317 cd01128 rho_factor Transcripti 97.3 0.0017 3.6E-08 68.1 11.1 25 266-290 18-42 (249)
318 PRK12723 flagellar biosynthesi 97.3 0.0019 4.2E-08 71.8 11.8 131 263-408 173-329 (388)
319 cd03281 ABC_MSH5_euk MutS5 hom 97.3 0.002 4.2E-08 66.0 11.0 113 264-386 29-161 (213)
320 PF00437 T2SE: Type II/IV secr 97.3 0.00024 5.2E-09 74.8 4.3 101 224-334 97-208 (270)
321 cd00046 DEXDc DEAD-like helica 97.3 0.0019 4.1E-08 58.6 9.8 23 266-288 2-24 (144)
322 PRK06762 hypothetical protein; 97.2 0.0012 2.6E-08 64.2 8.5 41 264-304 2-42 (166)
323 cd01122 GP4d_helicase GP4d_hel 97.2 0.0018 3.9E-08 68.0 10.3 39 260-298 26-68 (271)
324 cd00984 DnaB_C DnaB helicase C 97.2 0.0021 4.6E-08 66.2 10.6 39 260-298 9-51 (242)
325 PRK13948 shikimate kinase; Pro 97.2 0.0012 2.6E-08 65.9 8.4 43 262-306 8-50 (182)
326 PF06309 Torsin: Torsin; Inte 97.2 0.0019 4.2E-08 60.5 9.1 52 231-288 25-77 (127)
327 PRK04841 transcriptional regul 97.2 0.0054 1.2E-07 75.1 15.8 154 266-441 34-223 (903)
328 COG0563 Adk Adenylate kinase a 97.1 0.00093 2E-08 66.5 6.8 34 266-301 2-35 (178)
329 PRK09354 recA recombinase A; P 97.1 0.0019 4.1E-08 70.7 9.7 115 261-375 57-193 (349)
330 TIGR02782 TrbB_P P-type conjug 97.1 0.00041 8.9E-09 74.6 4.5 69 265-333 133-214 (299)
331 cd03216 ABC_Carb_Monos_I This 97.1 0.0013 2.7E-08 64.3 7.5 105 264-382 26-145 (163)
332 cd00464 SK Shikimate kinase (S 97.1 0.00084 1.8E-08 63.9 6.0 39 266-306 1-39 (154)
333 PF03266 NTPase_1: NTPase; In 97.1 0.001 2.2E-08 65.6 6.7 27 266-292 1-30 (168)
334 TIGR03880 KaiC_arch_3 KaiC dom 97.1 0.0045 9.7E-08 63.3 11.5 109 260-377 12-152 (224)
335 KOG0481 DNA replication licens 97.1 0.002 4.3E-08 72.1 9.1 134 266-415 366-533 (729)
336 cd01130 VirB11-like_ATPase Typ 97.1 0.0007 1.5E-08 67.5 5.2 68 265-332 26-109 (186)
337 PRK13947 shikimate kinase; Pro 97.1 0.00054 1.2E-08 66.8 4.2 31 266-296 3-33 (171)
338 PF05272 VirE: Virulence-assoc 97.1 0.0036 7.7E-08 63.4 10.2 125 240-400 34-169 (198)
339 PF13604 AAA_30: AAA domain; P 97.0 0.001 2.2E-08 67.2 6.1 97 266-378 20-132 (196)
340 TIGR03881 KaiC_arch_4 KaiC dom 97.0 0.0033 7.1E-08 64.5 9.9 39 260-298 16-57 (229)
341 TIGR02238 recomb_DMC1 meiotic 97.0 0.0025 5.4E-08 69.1 9.4 115 261-376 93-243 (313)
342 COG0703 AroK Shikimate kinase 97.0 0.0014 3.1E-08 64.6 6.8 32 265-296 3-34 (172)
343 PRK13946 shikimate kinase; Pro 97.0 0.0017 3.8E-08 64.6 7.6 34 263-296 9-42 (184)
344 PRK04301 radA DNA repair and r 97.0 0.0024 5.3E-08 69.1 9.2 117 260-377 98-251 (317)
345 COG4619 ABC-type uncharacteriz 97.0 0.0051 1.1E-07 60.3 10.3 23 265-287 30-52 (223)
346 TIGR03574 selen_PSTK L-seryl-t 97.0 0.0041 8.9E-08 64.8 10.4 36 267-302 2-40 (249)
347 COG3854 SpoIIIAA ncharacterize 97.0 0.0048 1E-07 63.3 10.3 70 266-335 139-230 (308)
348 cd01131 PilT Pilus retraction 97.0 0.001 2.2E-08 67.2 5.5 67 266-332 3-83 (198)
349 PRK03839 putative kinase; Prov 97.0 0.0006 1.3E-08 67.3 3.8 31 266-296 2-32 (180)
350 PRK14974 cell division protein 97.0 0.0049 1.1E-07 67.4 11.1 73 263-335 139-234 (336)
351 PRK05800 cobU adenosylcobinami 97.0 0.0033 7.1E-08 62.1 9.0 95 266-363 3-114 (170)
352 TIGR02236 recomb_radA DNA repa 97.0 0.0034 7.3E-08 67.7 9.7 117 260-377 91-245 (310)
353 PRK00625 shikimate kinase; Pro 97.0 0.00072 1.6E-08 67.0 4.1 31 266-296 2-32 (173)
354 PLN02674 adenylate kinase 97.0 0.0022 4.8E-08 67.0 7.8 38 264-303 31-68 (244)
355 PRK04328 hypothetical protein; 96.9 0.0075 1.6E-07 63.1 11.8 40 260-299 19-61 (249)
356 TIGR03878 thermo_KaiC_2 KaiC d 96.9 0.0038 8.3E-08 65.7 9.7 39 260-298 32-73 (259)
357 COG1066 Sms Predicted ATP-depe 96.9 0.0063 1.4E-07 67.1 11.4 150 265-418 94-260 (456)
358 smart00534 MUTSac ATPase domai 96.9 0.0049 1.1E-07 61.4 9.9 102 267-380 2-123 (185)
359 PLN03187 meiotic recombination 96.9 0.0032 7E-08 68.9 9.1 115 261-376 123-273 (344)
360 cd00227 CPT Chloramphenicol (C 96.9 0.0009 2E-08 65.9 4.4 38 265-302 3-40 (175)
361 PRK10867 signal recognition pa 96.9 0.022 4.8E-07 64.3 15.9 74 262-335 98-195 (433)
362 TIGR01420 pilT_fam pilus retra 96.9 0.0019 4.2E-08 70.8 7.3 68 266-333 124-205 (343)
363 PRK12724 flagellar biosynthesi 96.9 0.014 3E-07 65.4 13.9 115 263-386 222-353 (432)
364 cd02020 CMPK Cytidine monophos 96.9 0.0027 5.8E-08 59.8 7.3 30 267-296 2-31 (147)
365 COG4178 ABC-type uncharacteriz 96.9 0.0021 4.5E-08 74.5 7.7 54 312-380 522-575 (604)
366 PTZ00202 tuzin; Provisional 96.9 0.025 5.5E-07 63.4 15.8 63 228-299 259-321 (550)
367 PLN02200 adenylate kinase fami 96.9 0.0012 2.7E-08 68.5 5.4 42 260-303 39-80 (234)
368 PRK13894 conjugal transfer ATP 96.9 0.0012 2.6E-08 71.7 5.4 69 265-333 149-229 (319)
369 PF10236 DAP3: Mitochondrial r 96.9 0.044 9.5E-07 59.3 17.4 130 312-442 142-308 (309)
370 cd03238 ABC_UvrA The excision 96.9 0.0085 1.8E-07 59.5 11.0 115 265-400 22-163 (176)
371 PRK09519 recA DNA recombinatio 96.9 0.0051 1.1E-07 73.6 10.9 116 261-376 57-194 (790)
372 PTZ00035 Rad51 protein; Provis 96.9 0.0043 9.3E-08 67.9 9.6 115 260-375 114-264 (337)
373 PRK13833 conjugal transfer pro 96.9 0.0013 2.8E-08 71.4 5.4 68 265-332 145-224 (323)
374 cd02027 APSK Adenosine 5'-phos 96.9 0.0041 8.8E-08 59.9 8.2 36 267-302 2-40 (149)
375 KOG3347 Predicted nucleotide k 96.8 0.00084 1.8E-08 64.3 3.3 34 266-301 9-42 (176)
376 PF00448 SRP54: SRP54-type pro 96.8 0.0028 6.1E-08 64.1 7.2 130 264-406 1-155 (196)
377 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.001 2.2E-08 65.6 3.9 35 267-303 2-36 (183)
378 PRK13695 putative NTPase; Prov 96.8 0.0078 1.7E-07 59.1 10.1 23 266-288 2-24 (174)
379 TIGR02655 circ_KaiC circadian 96.8 0.0038 8.2E-08 71.6 9.0 77 260-336 259-366 (484)
380 PRK13900 type IV secretion sys 96.8 0.0022 4.8E-08 70.0 6.7 70 264-333 160-245 (332)
381 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.0068 1.5E-07 57.9 9.2 100 264-382 26-130 (144)
382 COG2874 FlaH Predicted ATPases 96.8 0.0071 1.5E-07 61.4 9.4 126 251-388 13-176 (235)
383 cd01125 repA Hexameric Replica 96.8 0.0055 1.2E-07 63.5 9.1 33 267-299 4-51 (239)
384 PRK06217 hypothetical protein; 96.8 0.0012 2.7E-08 65.5 4.1 31 266-296 3-33 (183)
385 TIGR02239 recomb_RAD51 DNA rep 96.8 0.004 8.7E-08 67.5 8.3 116 260-376 92-243 (316)
386 cd00544 CobU Adenosylcobinamid 96.7 0.007 1.5E-07 59.8 9.1 71 267-339 2-89 (169)
387 smart00487 DEXDc DEAD-like hel 96.7 0.01 2.2E-07 57.3 10.3 33 265-297 25-62 (201)
388 cd03243 ABC_MutS_homologs The 96.7 0.0049 1.1E-07 62.2 8.2 21 266-286 31-51 (202)
389 PRK08154 anaerobic benzoate ca 96.7 0.0049 1.1E-07 66.6 8.7 34 262-295 131-164 (309)
390 PLN03186 DNA repair protein RA 96.7 0.0053 1.1E-07 67.3 8.7 116 261-377 120-271 (342)
391 TIGR02788 VirB11 P-type DNA tr 96.7 0.0029 6.2E-08 68.4 6.6 72 262-333 142-228 (308)
392 PRK14531 adenylate kinase; Pro 96.7 0.0016 3.6E-08 64.6 4.4 35 265-301 3-37 (183)
393 cd01129 PulE-GspE PulE/GspE Th 96.7 0.0039 8.4E-08 65.9 7.4 94 228-334 57-160 (264)
394 TIGR02655 circ_KaiC circadian 96.7 0.011 2.4E-07 67.8 11.7 40 260-299 17-60 (484)
395 PRK11889 flhF flagellar biosyn 96.7 0.017 3.6E-07 64.2 12.4 72 263-334 240-331 (436)
396 PTZ00088 adenylate kinase 1; P 96.7 0.0018 3.9E-08 67.1 4.7 37 263-301 5-41 (229)
397 COG4088 Predicted nucleotide k 96.7 0.0056 1.2E-07 61.8 7.9 22 267-288 4-25 (261)
398 cd02021 GntK Gluconate kinase 96.7 0.0015 3.2E-08 62.3 3.8 33 267-301 2-34 (150)
399 PRK13808 adenylate kinase; Pro 96.7 0.0063 1.4E-07 66.2 8.9 34 267-302 3-36 (333)
400 PF13481 AAA_25: AAA domain; P 96.7 0.0045 9.7E-08 61.4 7.2 73 266-338 34-156 (193)
401 cd01428 ADK Adenylate kinase ( 96.7 0.0015 3.3E-08 64.7 3.9 35 267-303 2-36 (194)
402 PRK04040 adenylate kinase; Pro 96.6 0.011 2.4E-07 59.3 9.9 35 264-300 2-38 (188)
403 PF00406 ADK: Adenylate kinase 96.6 0.0047 1E-07 59.2 7.0 35 269-305 1-35 (151)
404 TIGR01425 SRP54_euk signal rec 96.6 0.051 1.1E-06 61.2 16.0 73 262-334 98-193 (429)
405 cd03222 ABC_RNaseL_inhibitor T 96.6 0.0096 2.1E-07 59.2 9.2 102 266-381 27-134 (177)
406 cd03246 ABCC_Protease_Secretio 96.6 0.0065 1.4E-07 59.7 7.9 102 266-381 30-158 (173)
407 TIGR01313 therm_gnt_kin carboh 96.6 0.0016 3.4E-08 63.1 3.5 32 267-300 1-32 (163)
408 PF04665 Pox_A32: Poxvirus A32 96.6 0.027 6E-07 58.7 12.6 131 264-413 13-169 (241)
409 PRK06547 hypothetical protein; 96.6 0.0022 4.8E-08 63.4 4.3 33 263-295 14-46 (172)
410 cd03280 ABC_MutS2 MutS2 homolo 96.6 0.012 2.6E-07 59.3 9.7 20 266-285 30-49 (200)
411 PRK00279 adk adenylate kinase; 96.6 0.0048 1E-07 62.9 6.8 29 267-295 3-31 (215)
412 PRK06696 uridine kinase; Valid 96.6 0.0042 9.2E-08 63.7 6.4 38 264-301 22-62 (223)
413 PRK03731 aroL shikimate kinase 96.6 0.0023 5E-08 62.5 4.3 31 265-295 3-33 (171)
414 PRK13764 ATPase; Provisional 96.6 0.0031 6.6E-08 73.6 5.9 70 264-334 257-335 (602)
415 PRK05057 aroK shikimate kinase 96.6 0.0024 5.2E-08 63.0 4.4 34 264-297 4-37 (172)
416 PRK14529 adenylate kinase; Pro 96.6 0.0048 1E-07 63.6 6.7 35 266-302 2-36 (223)
417 PF12780 AAA_8: P-loop contain 96.6 0.013 2.9E-07 62.1 10.2 172 232-418 9-214 (268)
418 TIGR03499 FlhF flagellar biosy 96.6 0.007 1.5E-07 64.6 8.2 38 263-300 193-235 (282)
419 cd03247 ABCC_cytochrome_bd The 96.5 0.016 3.4E-07 57.2 10.2 104 264-382 28-160 (178)
420 cd03223 ABCD_peroxisomal_ALDP 96.5 0.013 2.8E-07 57.3 9.5 100 264-380 27-149 (166)
421 PRK13851 type IV secretion sys 96.5 0.0036 7.9E-08 68.6 6.0 72 262-333 160-246 (344)
422 cd00267 ABC_ATPase ABC (ATP-bi 96.5 0.0097 2.1E-07 57.3 8.4 104 265-383 26-144 (157)
423 PRK14530 adenylate kinase; Pro 96.5 0.0023 4.9E-08 65.3 4.1 35 266-302 5-39 (215)
424 TIGR00959 ffh signal recogniti 96.5 0.059 1.3E-06 60.9 15.7 74 262-335 97-194 (428)
425 COG5245 DYN1 Dynein, heavy cha 96.5 0.013 2.8E-07 72.6 10.7 177 263-452 1493-1717(3164)
426 PHA02774 E1; Provisional 96.5 0.01 2.3E-07 68.4 9.7 33 265-297 435-468 (613)
427 cd03228 ABCC_MRP_Like The MRP 96.5 0.0096 2.1E-07 58.4 8.3 103 264-382 28-158 (171)
428 PRK08233 hypothetical protein; 96.5 0.0076 1.6E-07 59.0 7.6 33 265-297 4-37 (182)
429 COG5271 MDN1 AAA ATPase contai 96.5 0.0074 1.6E-07 75.1 8.7 135 266-415 890-1048(4600)
430 TIGR01526 nadR_NMN_Atrans nico 96.5 0.0075 1.6E-07 65.7 8.2 70 265-335 163-243 (325)
431 PHA02530 pseT polynucleotide k 96.5 0.0079 1.7E-07 64.2 8.2 40 264-304 2-41 (300)
432 PF01745 IPT: Isopentenyl tran 96.5 0.0031 6.6E-08 64.1 4.6 135 266-416 3-141 (233)
433 COG1121 ZnuC ABC-type Mn/Zn tr 96.5 0.015 3.4E-07 60.8 10.0 58 311-382 145-202 (254)
434 PRK05541 adenylylsulfate kinas 96.5 0.0092 2E-07 58.6 7.8 41 262-302 5-48 (176)
435 cd03115 SRP The signal recogni 96.5 0.019 4.2E-07 56.1 10.1 34 267-300 3-39 (173)
436 PRK14730 coaE dephospho-CoA ki 96.4 0.011 2.4E-07 59.7 8.4 39 266-306 3-41 (195)
437 PRK04220 2-phosphoglycerate ki 96.4 0.083 1.8E-06 56.8 15.4 40 262-302 90-129 (301)
438 cd03230 ABC_DR_subfamily_A Thi 96.4 0.023 5.1E-07 55.7 10.6 104 265-382 27-158 (173)
439 cd03227 ABC_Class2 ABC-type Cl 96.4 0.012 2.7E-07 57.3 8.5 22 264-285 21-42 (162)
440 COG1102 Cmk Cytidylate kinase 96.4 0.0026 5.6E-08 61.9 3.5 28 267-294 3-30 (179)
441 PF08423 Rad51: Rad51; InterP 96.4 0.0061 1.3E-07 64.2 6.6 111 266-377 40-186 (256)
442 COG3842 PotA ABC-type spermidi 96.4 0.0041 8.9E-08 68.1 5.4 27 260-286 25-53 (352)
443 PRK09302 circadian clock prote 96.4 0.023 4.9E-07 65.6 11.8 42 260-301 27-72 (509)
444 PRK14528 adenylate kinase; Pro 96.4 0.0032 6.9E-08 62.9 4.1 34 266-301 3-36 (186)
445 TIGR01360 aden_kin_iso1 adenyl 96.4 0.0032 7E-08 62.0 4.0 34 266-301 5-38 (188)
446 COG2884 FtsE Predicted ATPase 96.4 0.017 3.7E-07 57.8 8.9 32 257-288 19-52 (223)
447 PRK10416 signal recognition pa 96.4 0.043 9.2E-07 59.7 12.9 37 262-298 112-151 (318)
448 cd02019 NK Nucleoside/nucleoti 96.3 0.007 1.5E-07 50.5 5.3 31 267-297 2-33 (69)
449 TIGR00064 ftsY signal recognit 96.3 0.068 1.5E-06 56.8 14.1 37 262-298 70-109 (272)
450 COG1136 SalX ABC-type antimicr 96.3 0.035 7.5E-07 57.3 11.3 21 266-286 33-53 (226)
451 KOG0479 DNA replication licens 96.3 0.049 1.1E-06 62.3 13.2 153 232-402 302-486 (818)
452 PRK09302 circadian clock prote 96.3 0.015 3.3E-07 67.1 9.7 77 260-336 269-376 (509)
453 PF13479 AAA_24: AAA domain 96.3 0.013 2.9E-07 59.7 8.2 66 265-335 4-80 (213)
454 TIGR01351 adk adenylate kinase 96.3 0.0035 7.6E-08 63.6 3.9 34 267-302 2-35 (210)
455 PRK02496 adk adenylate kinase; 96.3 0.0037 8E-08 61.9 4.0 30 266-295 3-32 (184)
456 TIGR02525 plasmid_TraJ plasmid 96.3 0.0074 1.6E-07 66.9 6.7 69 266-334 151-236 (372)
457 COG2074 2-phosphoglycerate kin 96.3 0.089 1.9E-06 54.8 13.9 187 261-475 86-285 (299)
458 PRK06581 DNA polymerase III su 96.3 0.13 2.9E-06 53.6 15.2 136 264-418 15-165 (263)
459 COG2274 SunT ABC-type bacterio 96.3 0.012 2.7E-07 70.2 8.9 67 311-399 615-681 (709)
460 TIGR00152 dephospho-CoA kinase 96.3 0.021 4.5E-07 56.9 9.3 39 267-307 2-40 (188)
461 PF02562 PhoH: PhoH-like prote 96.3 0.0035 7.6E-08 63.8 3.6 23 266-288 21-43 (205)
462 PRK14527 adenylate kinase; Pro 96.3 0.0038 8.2E-08 62.4 3.8 37 263-301 5-41 (191)
463 PF08298 AAA_PrkA: PrkA AAA do 96.2 0.01 2.2E-07 64.7 7.3 83 230-319 59-144 (358)
464 cd03214 ABC_Iron-Siderophores_ 96.2 0.021 4.6E-07 56.4 9.0 105 265-382 26-161 (180)
465 cd03282 ABC_MSH4_euk MutS4 hom 96.2 0.03 6.5E-07 57.0 10.3 103 265-383 30-155 (204)
466 TIGR00767 rho transcription te 96.2 0.017 3.6E-07 64.4 8.9 24 266-289 170-193 (415)
467 PRK08099 bifunctional DNA-bind 96.2 0.012 2.6E-07 65.9 8.0 39 264-302 219-257 (399)
468 COG2804 PulE Type II secretory 96.2 0.011 2.3E-07 67.1 7.4 97 225-335 232-339 (500)
469 PF09848 DUF2075: Uncharacteri 96.2 0.0093 2E-07 65.5 6.9 23 266-288 3-25 (352)
470 cd03215 ABC_Carb_Monos_II This 96.2 0.023 4.9E-07 56.3 9.0 24 265-288 27-50 (182)
471 KOG3928 Mitochondrial ribosome 96.2 0.13 2.9E-06 56.9 15.4 49 395-444 405-457 (461)
472 PF06414 Zeta_toxin: Zeta toxi 96.2 0.016 3.4E-07 58.4 7.9 42 262-303 13-55 (199)
473 cd03287 ABC_MSH3_euk MutS3 hom 96.2 0.03 6.4E-07 57.8 10.0 105 265-383 32-158 (222)
474 PRK05703 flhF flagellar biosyn 96.2 0.035 7.6E-07 62.7 11.4 37 264-300 221-262 (424)
475 PF13238 AAA_18: AAA domain; P 96.2 0.0037 8E-08 57.2 3.0 22 267-288 1-22 (129)
476 COG1118 CysA ABC-type sulfate/ 96.1 0.016 3.6E-07 61.8 8.0 21 266-286 30-50 (345)
477 COG0467 RAD55 RecA-superfamily 96.1 0.024 5.2E-07 59.5 9.3 44 260-303 19-65 (260)
478 COG1936 Predicted nucleotide k 96.1 0.0038 8.3E-08 61.4 3.0 30 266-296 2-31 (180)
479 TIGR03819 heli_sec_ATPase heli 96.1 0.0063 1.4E-07 66.7 5.1 69 265-333 179-263 (340)
480 PRK00081 coaE dephospho-CoA ki 96.1 0.025 5.5E-07 56.8 9.1 38 265-305 3-40 (194)
481 cd03232 ABC_PDR_domain2 The pl 96.1 0.045 9.7E-07 54.7 10.8 23 265-287 34-56 (192)
482 PRK04182 cytidylate kinase; Pr 96.1 0.0051 1.1E-07 60.0 3.9 29 266-294 2-30 (180)
483 TIGR02533 type_II_gspE general 96.1 0.012 2.5E-07 67.6 7.4 95 226-334 217-322 (486)
484 COG1120 FepC ABC-type cobalami 96.1 0.015 3.3E-07 61.1 7.6 23 266-288 30-52 (258)
485 COG1127 Ttg2A ABC-type transpo 96.1 0.024 5.3E-07 58.6 8.8 32 257-288 25-58 (263)
486 PF05970 PIF1: PIF1-like helic 96.1 0.031 6.8E-07 61.8 10.4 26 263-288 21-46 (364)
487 PRK12337 2-phosphoglycerate ki 96.1 0.17 3.6E-06 57.5 16.2 73 395-474 386-458 (475)
488 PRK01184 hypothetical protein; 96.1 0.005 1.1E-07 60.9 3.8 29 266-295 3-31 (184)
489 cd03213 ABCG_EPDR ABCG transpo 96.1 0.038 8.1E-07 55.4 10.0 25 264-288 35-59 (194)
490 PF13245 AAA_19: Part of AAA d 96.1 0.0086 1.9E-07 51.2 4.5 32 267-298 13-51 (76)
491 PRK00889 adenylylsulfate kinas 96.0 0.026 5.6E-07 55.4 8.5 39 264-302 4-45 (175)
492 PF13521 AAA_28: AAA domain; P 96.0 0.006 1.3E-07 59.2 3.9 34 267-301 2-35 (163)
493 TIGR02173 cyt_kin_arch cytidyl 96.0 0.0062 1.3E-07 59.0 3.9 28 267-294 3-30 (171)
494 PRK14737 gmk guanylate kinase; 96.0 0.013 2.8E-07 58.7 6.2 26 263-288 3-28 (186)
495 cd03284 ABC_MutS1 MutS1 homolo 96.0 0.027 5.8E-07 57.7 8.6 22 265-286 31-52 (216)
496 COG2805 PilT Tfp pilus assembl 96.0 0.029 6.3E-07 59.8 8.8 94 264-378 124-232 (353)
497 TIGR01448 recD_rel helicase, p 96.0 0.019 4.2E-07 69.0 8.5 97 266-379 340-455 (720)
498 KOG0058 Peptide exporter, ABC 95.9 0.027 5.8E-07 66.1 9.3 26 261-286 491-516 (716)
499 TIGR00150 HI0065_YjeE ATPase, 95.9 0.015 3.1E-07 55.3 5.9 27 265-291 23-49 (133)
500 cd03229 ABC_Class3 This class 95.9 0.031 6.8E-07 55.1 8.5 23 266-288 28-50 (178)
No 1
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-112 Score=949.36 Aligned_cols=587 Identities=52% Similarity=0.815 Sum_probs=527.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCccccHHHHHHHHhcCCeeEEEEeeCCeEEEEEeccccCCCceeEEEEEcC--
Q 005304 66 KKLVGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLP-- 143 (703)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 143 (703)
+|++++++++.+++.+.. .....++|++|+.++..++|++|.+..++.........+ ....+..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~ 68 (596)
T COG0465 2 LWLLIAIVLIFLFNLFTN-------SSSKQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDG------SKNTVYLPKG 68 (596)
T ss_pred chhHHHHHHHHHHHHhhh-------cccccccHHHHHHHHhcCCceEEEEcCCceEEEEEecCC------cceEEeecCC
Confidence 466666666666666642 234679999999999999999999976553322222221 12233444
Q ss_pred CCcHHHHHHHHhcCcceeeccCCCcchhhHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccc
Q 005304 144 GLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQME 223 (703)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 223 (703)
..++++...+..+++.+....+... +.|+.++..|++.+++++.++|++++...+ +++.+ .|+||+|+++...+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lp~il~~~~~~~~~~r~~~~---g~g~~-~~~~gkskak~~~~ 142 (596)
T COG0465 69 VNDPNLVSFLDSNNITESGFIPEDN--SLLASLLSTWLPFILLIGLGWFFFRRQAQG---GGGGG-AFSFGKSKAKLYLE 142 (596)
T ss_pred cccHHHHHHHHhcCCcccccCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCc-ccCCChHHHHHhcc
Confidence 3477899999999986655554333 567777777777777777666555544322 12222 89999999999988
Q ss_pred cCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~ 303 (703)
....++|+|++|++++|+++.|+|++|++|.+|..+|+++|+|+||+||||||||+||||+|+++++||+++|+|+|+++
T Consensus 143 ~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 143 DQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred cccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccccc
Q 005304 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (703)
Q Consensus 304 ~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 383 (703)
|+|.+++++|++|.+|++++||||||||||+++++|+.+.+++++++++++||||.+||+|..+.+|+||++||+|+.||
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHH
Q 005304 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKE 463 (703)
Q Consensus 384 ~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d 463 (703)
+||+|||||||+|.++.||..+|.+|++.|+++++++.++|+..+|+.|+||+|+||+|++|+|++.|.++++..|++.|
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~ 382 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRD 382 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcCCccc-ccCCcchhhhHHHHHHHHHHhhcCCCCCcceeeeecCcccceEEEEccCCCCCcccHHHHHH
Q 005304 464 IDDSIDRIVAGMEGTVM-TDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFA 542 (703)
Q Consensus 464 i~~Al~~v~~g~~~~~~-~~~~~~~~va~hEaGhAlv~~~~~~~~~v~kvti~prg~a~G~~~~~p~~~~~~~t~~~l~~ 542 (703)
|++|++++++|++++.. .++++++.+||||+|||+++++++.+++++|+||+|||+++|||++.|.+|+.++||.++++
T Consensus 383 i~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPrG~alG~t~~~Pe~d~~l~sk~~l~~ 462 (596)
T COG0465 383 IEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGLLLPDADPVHKVTIIPRGRALGYTLFLPEEDKYLMSKEELLD 462 (596)
T ss_pred hHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHHHHhCCCCcccceeeeccCchhhcchhcCCccccccccHHHHHH
Confidence 99999999999999875 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchhhhhhhhcCCCCcccCccchHHHHHHHHHhhhccccccceEEeeccCC-CCcccccCCCCcchhHHhhhhcc
Q 005304 543 RIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQAHYFFFFLQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARN 621 (703)
Q Consensus 543 ~i~~~lgGraAE~~~fg~~~~t~Ga~~Dl~~at~lA~~~~~~~~~~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~~~~~~ 621 (703)
+|+++||||||||++||. ++||||++|+++||++|| .||++||||+ +||+.|....+ -|+++....+
T Consensus 463 ~i~~~lgGRaAEel~~g~-e~ttGa~~D~~~at~~ar---------~mVt~~Gms~~lG~v~~~~~~~--~flg~~~~~~ 530 (596)
T COG0465 463 RIDVLLGGRAAEELIFGY-EITTGASNDLEKATDLAR---------AMVTEYGMSAKLGPVAYEQVEG--VFLGRYQKAK 530 (596)
T ss_pred HHHHHhCCcHhhhhhhcc-cccccchhhHHHHHHHHH---------HhhhhcCcchhhCceehhhccc--cccccccccc
Confidence 999999999999999998 899999999999999999 9999999998 99999987543 4886544677
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhccc
Q 005304 622 SMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFV 683 (703)
Q Consensus 622 ~~s~~~~~~id~ev~~il~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~~~ 683 (703)
++|++|++.||.||++++++||++|++||.+|++.++.+++.|+|+|||+++||.+|++...
T Consensus 531 ~~Se~ta~~ID~evk~ii~~~y~~a~~il~~~~~~l~~~~~~Lle~Eti~~~~i~~i~~~~~ 592 (596)
T COG0465 531 NYSEETAQEIDREVKDIIDEAYERAKELLNENKDALETLAEMLLEKETIDAEEIKDILAGRK 592 (596)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCHHHHHHHHhccc
Confidence 89999999999999999999999999999999999999999999999999999999998653
No 2
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-108 Score=881.41 Aligned_cols=442 Identities=54% Similarity=0.819 Sum_probs=423.2
Q ss_pred cccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechh
Q 005304 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (703)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se 299 (703)
...+...+++|+||.|+|++|++|+|+|++|++|++|.++|.+.||||||+||||||||+||||+|+|+++|||+.++++
T Consensus 293 v~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSE 372 (752)
T KOG0734|consen 293 VDPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSE 372 (752)
T ss_pred cChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccc
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005304 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (703)
Q Consensus 300 ~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (703)
|-++|+|++++++|++|..|++++||||||||||++|.+|.... ..+..+++||||.+||||..|.+||||+|||.|
T Consensus 373 FdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~---~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfp 449 (752)
T KOG0734|consen 373 FDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD---QHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFP 449 (752)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH---HHHHHHHHHHHHHHhcCcCcCCceEEEeccCCh
Confidence 99999999999999999999999999999999999999986532 227899999999999999999999999999999
Q ss_pred ccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCc
Q 005304 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAI 459 (703)
Q Consensus 380 ~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~I 459 (703)
+.||+||.||||||++|.++.||.++|.+||+.|+.++.++.++|+..||+.|+||+||||+|++|.|++.|+..+...+
T Consensus 450 e~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~V 529 (752)
T KOG0734|consen 450 EALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMV 529 (752)
T ss_pred hhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCcCCccc-ccCCcchhhhHHHHHHHHHHhhcCCCCCcceeeeecCcccceEEEEccCCCCCcccHH
Q 005304 460 SSKEIDDSIDRIVAGMEGTVM-TDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQ 538 (703)
Q Consensus 460 t~~di~~Al~~v~~g~~~~~~-~~~~~~~~va~hEaGhAlv~~~~~~~~~v~kvti~prg~a~G~~~~~p~~~~~~~t~~ 538 (703)
++.|++.|.+++++|++++.+ ++++.++.+||||.|||||+..+.++.|+||+||+|||.++|.+.++|+.|++.+||.
T Consensus 530 tM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t~~LPe~D~~~~Tk~ 609 (752)
T KOG0734|consen 530 TMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHTSQLPEKDRYSITKA 609 (752)
T ss_pred cHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCccccceeecCccchhhHHHH
Confidence 999999999999999999874 5888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhhhhhhhcCCCCcccCccchHHHHHHHHHhhhccccccceEEeeccCC-CCcccccCCCCcchhHHhh
Q 005304 539 QLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQAHYFFFFLQMVTTFGMSE-IGPWSLMDGSQSGDVIMRM 617 (703)
Q Consensus 539 ~l~~~i~~~lgGraAE~~~fg~~~~t~Ga~~Dl~~at~lA~~~~~~~~~~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~~ 617 (703)
++++++.+|||||+|||++||.+.+||||++||++||++|+ .||+.||||+ +||+.+.....
T Consensus 610 q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~---------~MVt~fGMSd~vG~v~~~~~~~-------- 672 (752)
T KOG0734|consen 610 QLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLAR---------RMVTKFGMSDKVGPVTLSAEDN-------- 672 (752)
T ss_pred HHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHH---------HHHHHcCccccccceeeeccCC--------
Confidence 99999999999999999999999999999999999999999 9999999998 99998866322
Q ss_pred hhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhccc
Q 005304 618 MARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFV 683 (703)
Q Consensus 618 ~~~~~~s~~~~~~id~ev~~il~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~~~ 683 (703)
..+++..+...||.||+++++++|+||+.||+.|...+++||++||++|||+++||++++.+..
T Consensus 673 --~~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~g~~ 736 (752)
T KOG0734|consen 673 --SSSLSPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLKGKS 736 (752)
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhccc
Confidence 2467889999999999999999999999999999999999999999999999999999998763
No 3
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.7e-101 Score=888.65 Aligned_cols=584 Identities=66% Similarity=1.037 Sum_probs=518.6
Q ss_pred CCCccccHHHHHHHHhcCCeeEEEEeeCCeEEEEEeccccCCCceeEEEEEcCCCcHHHHHHHHhcCcceeeccCCCcch
Q 005304 91 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSG 170 (703)
Q Consensus 91 ~~~~~~~y~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 170 (703)
.+.++++||+|++++++|+|++|.+.+++....+....++.+.....+.+..|..++++++.|.++++++...+....
T Consensus 47 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-- 124 (638)
T CHL00176 47 KASSRMTYGRFLEYLDMGWIKKVDLYDNGRTAIVEASSPELGNRPQRIRVELPVGASELIQKLKEANIDFDAHPPVLK-- 124 (638)
T ss_pred CCCceecHHHHHHHHHcCCeeEEEEecCceEEEEeeccccCCCcceeEEEeCCCCCHHHHHHHHHcCCcEEecCCCcc--
Confidence 456679999999999999999999986654333332222212234556777776678999999999999988765544
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccCCCccccccccchHHHHHHHHHHHHh
Q 005304 171 SLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFL 250 (703)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l 250 (703)
++|+..+.++++|++++++++|++.+.....++ .....++|+++++++.......++|+||+|++++|+++.++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~l~eiv~~l 202 (638)
T CHL00176 125 SNIVTILSNLLLPLILIGVLWFFFQRSSNFKGG--PGQNLMNFGKSKARFQMEADTGITFRDIAGIEEAKEEFEEVVSFL 202 (638)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CcccccccchhHHHhhcccCCCCCHHhccChHHHHHHHHHHHHHH
Confidence 567777777777777776665554443221111 112467899999988877888899999999999999999999999
Q ss_pred cCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEc
Q 005304 251 KKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVD 330 (703)
Q Consensus 251 ~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfID 330 (703)
++++.|..+|.++|+|+||+||||||||++|+++|+++++||+++++++|.+.+.|.+..+++++|+.|+.++|||||||
T Consensus 203 k~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfID 282 (638)
T CHL00176 203 KKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFID 282 (638)
T ss_pred hCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHH
Q 005304 331 EIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEIL 410 (703)
Q Consensus 331 EID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL 410 (703)
|||.++.+|+.+.++++++.++++++||.+||++..+.+++||++||+++.+|++++||||||++|.+++|+.++|.+||
T Consensus 283 EID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL 362 (638)
T CHL00176 283 EIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDIL 362 (638)
T ss_pred cchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHH
Confidence 99999998887777788899999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCcCCcccccCCcchhhh
Q 005304 411 KVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVA 490 (703)
Q Consensus 411 ~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~~g~~~~~~~~~~~~~~va 490 (703)
+.|+++..+.+++++..+|..|.||||+||+++|++|+..|.+++...|+.+||++|+++++.|.++....++++++++|
T Consensus 363 ~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~~~~~~~~~~~vA 442 (638)
T CHL00176 363 KVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEGTPLEDSKNKRLIA 442 (638)
T ss_pred HHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccCccccHHHHHHHH
Confidence 99999988888999999999999999999999999999999999999999999999999999998877666778899999
Q ss_pred HHHHHHHHHHhhcCCCCCcceeeeecCcccceEEEEccCCCCCcccHHHHHHHHHHhhchhhhhhhhcCCCCcccCccch
Q 005304 491 YHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGD 570 (703)
Q Consensus 491 ~hEaGhAlv~~~~~~~~~v~kvti~prg~a~G~~~~~p~~~~~~~t~~~l~~~i~~~lgGraAE~~~fg~~~~t~Ga~~D 570 (703)
|||+||||+++++++.+++++|||+|||+++||+++.|.++..++||.+++++|+++|||||||+++||+.++|+||++|
T Consensus 443 ~hEaGhA~v~~~l~~~~~v~kvtI~prg~~~G~~~~~p~~~~~~~t~~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~D 522 (638)
T CHL00176 443 YHEVGHAIVGTLLPNHDPVQKVTLIPRGQAKGLTWFTPEEDQSLVSRSQILARIVGALGGRAAEEVVFGSTEVTTGASND 522 (638)
T ss_pred HHhhhhHHHHhhccCCCceEEEEEeecCCCCCceEecCCcccccccHHHHHHHHHHHhhhHHHHHHhcCCCCcCCCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987899999999
Q ss_pred HHHHHHHHHhhhccccccceEEeeccCCCCcccccCCCCcchhHH-hhhhccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005304 571 LQQITGLAKQAHYFFFFLQMVTTFGMSEIGPWSLMDGSQSGDVIM-RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQ 649 (703)
Q Consensus 571 l~~at~lA~~~~~~~~~~~mv~~~Gm~~~g~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~id~ev~~il~~ay~~A~~i 649 (703)
|++||++|+ .||++||||++||+.+........|++ .+...+.+|+++++.||.||++++++||++|+++
T Consensus 523 l~~AT~iA~---------~mv~~~Gm~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~iD~ev~~~l~~~~~~a~~i 593 (638)
T CHL00176 523 LQQVTNLAR---------QMVTRFGMSSIGPISLESNNSTDPFLGRFMQRNSEYSEEIADKIDMEVRSILHTCYQYAYQI 593 (638)
T ss_pred HHHHHHHHH---------HHHHHhCCCcCCceeecCCCCcccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999865332123664 3445678999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCCC
Q 005304 650 IRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPA 687 (703)
Q Consensus 650 L~~~r~~l~~la~~Lle~etL~g~ei~~il~~~~~~~~ 687 (703)
|++||+.|++||++|+|+|||+|+||++|++++...|+
T Consensus 594 L~~~~~~l~~la~~Lle~Etl~~~ei~~il~~~~~~~~ 631 (638)
T CHL00176 594 LKDNRVLIDLLVELLLQKETIDGDEFREIVNSYTILPP 631 (638)
T ss_pred HHHhHHHHHHHHHHHHHhCccCHHHHHHHHhhcCCCCC
Confidence 99999999999999999999999999999988765443
No 4
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-100 Score=867.93 Aligned_cols=576 Identities=55% Similarity=0.856 Sum_probs=487.1
Q ss_pred CccccHHHHH-HHHhcCCeeEEEEeeCCeEEEEEeccccCCC--ceeEEEEEcCCCcHHHHHHHHh----cCcce-eecc
Q 005304 93 SSRMSYSRFL-EYLDKDRVKKVDLFENGTIAIVEAISPELGN--RVQRVRVQLPGLSQELLQKFRE----KNIDF-AAHN 164 (703)
Q Consensus 93 ~~~~~y~~f~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~----~~~~~-~~~~ 164 (703)
..+++|.+|+ ++++.|.|.++.+...-....++........ ....+...+-. .+.+.+++.. -+++. ...+
T Consensus 163 ~~ei~~~df~~~~le~g~v~~~evv~~~~~~rv~~~~~~~~~~~~~~~~~~~i~~-v~~F~~kl~~a~~~l~~~~~~~~p 241 (774)
T KOG0731|consen 163 WQEITWRDFKQKLLEKGEVGKLEVVNPYAVVRVELDRGRIPGDRLIQKVWFNIRS-VDNFERKLDEAQRNLGIDTVVRVP 241 (774)
T ss_pred ceeeeHHHHHHHHhhccceeeEEeeccceeEEEEEeccccccccceeeEEEEecc-cchHHHHHHHHHHHhCCCceeEee
Confidence 4589999997 7999999999888642222222221111100 01222222211 2333333322 22221 1112
Q ss_pred CCCcchhhHHHHHHhHHHH-HHHHHHHHHHHhhcCC-CCCCCCCCCCccccccccc--ccccccCCCccccccccchHHH
Q 005304 165 AQEDSGSLLFNLIGNLAFP-LILIGGLFLLSRRSSG-GMGGPGGPGFPLAFGQSKA--KFQMEPNTGVTFDDVAGVDEAK 240 (703)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~f~dv~G~de~k 240 (703)
........+...+. .++| +++++.++++.|++.+ +.+++|+..+++.|+.++. ++..+..++++|.||+|++++|
T Consensus 242 V~~~~~~~~~~~~~-~~~pti~~~~~l~~l~r~~~~~~~~~~gg~~g~~~f~~~ks~~k~~~~~~t~V~FkDVAG~deAK 320 (774)
T KOG0731|consen 242 VTYISESLLDLILG-LLLPTILLLGGLLYLSRRSEGMGKGGPGGGLGPRLFGVSKSYKKFKNEGNTGVKFKDVAGVDEAK 320 (774)
T ss_pred eEEeecchhhhhhh-hhhHHHHHHHhHheeeeecccccccCCccccCcceeeeccceeeeccCCCCCCccccccCcHHHH
Confidence 21111122233333 3445 7788888888888764 1223344444556665555 6777888889999999999999
Q ss_pred HHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhhHHHHHHHHHH
Q 005304 241 QDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAK 320 (703)
Q Consensus 241 ~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~ 320 (703)
++|.|+|.+|++|++|.++|+++|||+||+||||||||+||||+|+|+++||+.+++++|+++++|.+++++|++|..|+
T Consensus 321 ~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar 400 (774)
T KOG0731|consen 321 EELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLAR 400 (774)
T ss_pred HHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEcCcccccccC-CCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeec
Q 005304 321 ENAPCIVFVDEIDAVGRQR-GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 399 (703)
Q Consensus 321 ~~aP~ILfIDEID~L~~~r-~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~ 399 (703)
.++||||||||||+++.+| +.+.+++++++++++||||.+||+|....+|+|+|+||+++.||+||+|||||||+|.++
T Consensus 401 ~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~ 480 (774)
T KOG0731|consen 401 KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQID 480 (774)
T ss_pred ccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceecc
Confidence 9999999999999999999 445678899999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCcCCc
Q 005304 400 VPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGT 478 (703)
Q Consensus 400 ~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~~g~~~~ 478 (703)
+||..+|.+|++.|+++.+++ +++++..+|.+|+||+|+||.|+||+|++.|.|++...|+..||++|+++++.|.+.+
T Consensus 481 ~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~~~ 560 (774)
T KOG0731|consen 481 LPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAGMEKK 560 (774)
T ss_pred CCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhcccccc
Confidence 999999999999999999986 7788999999999999999999999999999999999999999999999999998876
Q ss_pred c-cccCCcchhhhHHHHHHHHHHhhcCCCCCcceeeeecCcccceEEEEccCCCCCcccHHHHHHHHHHhhchhhhhhhh
Q 005304 479 V-MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVI 557 (703)
Q Consensus 479 ~-~~~~~~~~~va~hEaGhAlv~~~~~~~~~v~kvti~prg~a~G~~~~~p~~~~~~~t~~~l~~~i~~~lgGraAE~~~ 557 (703)
. ..+.++++.+||||+|||+++|++++.+|+.||+|+| |+++||+++.|.++ +++|+.+|+++|++.|||||||+++
T Consensus 561 ~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP-GqalG~a~~~P~~~-~l~sk~ql~~rm~m~LGGRaAEev~ 638 (774)
T KOG0731|consen 561 SRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP-GQALGYAQYLPTDD-YLLSKEQLFDRMVMALGGRAAEEVV 638 (774)
T ss_pred chhcCHhhhhhhhhhhccchhhhccccccCcceeEEecc-CCccceEEECCccc-ccccHHHHHHHHHHHhCcchhhhee
Confidence 5 5678899999999999999999999999999999999 67999999999877 8999999999999999999999999
Q ss_pred cCCCCcccCccchHHHHHHHHHhhhccccccceEEeeccCC-CCcccccCCCCcchhHHhhhhccccCHHHHHHHHHHHH
Q 005304 558 FGEPEVTTGAAGDLQQITGLAKQAHYFFFFLQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVK 636 (703)
Q Consensus 558 fg~~~~t~Ga~~Dl~~at~lA~~~~~~~~~~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~ 636 (703)
|| +++||||++||++||++|+ .||++|||++ +|++++... ..+.+...+++|+.+++.||.||+
T Consensus 639 fg-~~iTtga~ddl~kvT~~A~---------~~V~~~Gms~kig~~~~~~~-----~~~~~~~~~p~s~~~~~~Id~ev~ 703 (774)
T KOG0731|consen 639 FG-SEITTGAQDDLEKVTKIAR---------AMVASFGMSEKIGPISFQML-----LPGDESFRKPYSEKTAQLIDTEVR 703 (774)
T ss_pred cC-CccCchhhccHHHHHHHHH---------HHHHHcCcccccCceeccCc-----ccccccccCccchhHHHHHHHHHH
Confidence 99 6899999999999999999 9999999998 999998331 112344568999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCCC
Q 005304 637 RLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPA 687 (703)
Q Consensus 637 ~il~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~~~~~~~ 687 (703)
+|+..||++|.++|++|++.++.||+.||++|+|+++|+.+++..++..+.
T Consensus 704 ~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~~ 754 (774)
T KOG0731|consen 704 RLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGMP 754 (774)
T ss_pred HHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCccc
Confidence 999999999999999999999999999999999999999999998876664
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=8.9e-93 Score=823.36 Aligned_cols=592 Identities=47% Similarity=0.757 Sum_probs=516.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccHHHHHHHHhcCCeeEEEEeeCCeEEEEEeccccCCCceeEEEEE
Q 005304 62 RGFLKKLVGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQ 141 (703)
Q Consensus 62 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (703)
++.+.|++++++++.++..+... ......++|+.|.+.+.++.|.++.+..+ .+ .. ...+ ...+...
T Consensus 3 ~~~L~~i~l~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~Ev~~~~~-tI-K~--~~~e----~~~~~~~ 69 (644)
T PRK10733 3 KNLILWLVIAVVLMSVFQSFGPS-----ESNGRKVDYSTFLQEVNQDQVREARINGR-EI-NV--TKKD----SNRYTTY 69 (644)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcC-----CCCcccCCHHHHHHHHHcCCeEEEEEeCC-EE-EE--EEcC----CceEEEe
Confidence 46777877776666555444332 12345799999999999999999988532 22 11 1111 1234444
Q ss_pred cCCCcHHHHHHHHhcCcceeeccCCCcchhhHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccc
Q 005304 142 LPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQ 221 (703)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 221 (703)
.|..++.++..+.++++.+........ .++..++..+.+.++++++++++.++++.+ +....+.|+++...+.
T Consensus 70 ~~~~~~~l~~~l~~~~v~~~~~~~~~~--~~~~~i~~~~~~~il~ig~~~v~~g~mt~G-----~~~~l~af~~~~~~~~ 142 (644)
T PRK10733 70 IPVNDPKLLDNLLTKNVKVVGEPPEEP--SLLASIFISWFPMLLLIGVWIFFMRQMQGG-----GGKGAMSFGKSKARML 142 (644)
T ss_pred CCCCCHHHHHHHHHcCCeEEecCcccc--hHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-----CCceeEEecccccccc
Confidence 565578899999999998877654433 445555555556666677777777766532 2234678888888887
Q ss_pred cccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
.+.....+|+|+.|.+.+++++.+++.+++++..|..++..+|+|+||+||||||||++|+++|+++++||+.++++++.
T Consensus 143 ~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 143 TEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred CchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 77667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccc
Q 005304 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (703)
Q Consensus 302 ~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 381 (703)
+.+.|.+...++++|+.++..+||||||||||+++.+|+.+.++++++..+++++||.+||++..+.+++||+|||+|+.
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~ 302 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV 302 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhh
Confidence 99999999999999999999999999999999999999887777888899999999999999999999999999999999
Q ss_pred ccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCH
Q 005304 382 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISS 461 (703)
Q Consensus 382 LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~ 461 (703)
||++++||||||++|.|++||.++|.+||+.|+++.++..++++..+|+.|.||||+||.++|++|+..|.++++..|+.
T Consensus 303 lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~ 382 (644)
T PRK10733 303 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSM 382 (644)
T ss_pred cCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCcCCcc-cccCCcchhhhHHHHHHHHHHhhcCCCCCcceeeeecCcccceEEEEccCCCCCcccHHHH
Q 005304 462 KEIDDSIDRIVAGMEGTV-MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQL 540 (703)
Q Consensus 462 ~di~~Al~~v~~g~~~~~-~~~~~~~~~va~hEaGhAlv~~~~~~~~~v~kvti~prg~a~G~~~~~p~~~~~~~t~~~l 540 (703)
.|+++|++++..+.+++. ..+.++++.+||||+||||++++++..+++++|+|+|||.++||+++.|.++....||.+|
T Consensus 383 ~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~prg~~~g~~~~~~~~~~~~~~~~~l 462 (644)
T PRK10733 383 VEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKL 462 (644)
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEeccCCCcceeEECCCcccccccHHHH
Confidence 999999999999887654 4466788999999999999999999999999999999999999999999988888999999
Q ss_pred HHHHHHhhchhhhhhhhcCCCCcccCccchHHHHHHHHHhhhccccccceEEeeccCC-CCcccccCCCCcchhHHh-hh
Q 005304 541 FARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQAHYFFFFLQMVTTFGMSE-IGPWSLMDGSQSGDVIMR-MM 618 (703)
Q Consensus 541 ~~~i~~~lgGraAE~~~fg~~~~t~Ga~~Dl~~at~lA~~~~~~~~~~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~-~~ 618 (703)
+++|+++|||||||+++||.+++||||+|||++||+||+ .||++||||+ +||+.|..... ..|+++ +.
T Consensus 463 ~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~lA~---------~mv~~~Gms~~lg~~~~~~~~~-~~~lg~~~~ 532 (644)
T PRK10733 463 ESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLAR---------NMVTQWGFSEKLGPLLYAEEEG-EVFLGRSVA 532 (644)
T ss_pred HHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHHHH---------HHHHHhCCCccccchhhccccc-ccccccccc
Confidence 999999999999999999988899999999999999999 9999999998 99999865322 135533 44
Q ss_pred hccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhccc
Q 005304 619 ARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFV 683 (703)
Q Consensus 619 ~~~~~s~~~~~~id~ev~~il~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~~~ 683 (703)
..+.+|+++++.||.||++++++||++|++||++||+.|++||++|+|+|||+++||++|+.++.
T Consensus 533 ~~~~~s~~~~~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~~~~ 597 (644)
T PRK10733 533 KAKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARRD 597 (644)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHhcCC
Confidence 45789999999999999999999999999999999999999999999999999999999998764
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=4.6e-83 Score=724.57 Aligned_cols=490 Identities=60% Similarity=0.955 Sum_probs=443.8
Q ss_pred HHHHHHhHHHHHHHHH-HHHHHHhhcCCCCCCCCCCCCcccccccccccccccCCCccccccccchHHHHHHHHHHHHhc
Q 005304 173 LFNLIGNLAFPLILIG-GLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLK 251 (703)
Q Consensus 173 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~ 251 (703)
|.+++.++.+|+++++ .|+++.+++.++ | +..+.+++++.++..++.++++|+||+|++++|+++.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~ 75 (495)
T TIGR01241 2 LLGFLFSLLPPILLLVGVWFFFRRQMQGG----G--GRAFSFGKSKAKLLNEEKPKVTFKDVAGIDEAKEELMEIVDFLK 75 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC----C--CCCcCCCCCccccccCCCCCCCHHHhCCHHHHHHHHHHHHHHHH
Confidence 4555666666555554 445555555532 1 34567889999998888899999999999999999999999999
Q ss_pred CchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcC
Q 005304 252 KPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDE 331 (703)
Q Consensus 252 ~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDE 331 (703)
+++.|...|.++|+|+|||||||||||++|+++|+++++||+.+++++|.+.+.|.+.+.++++|+.|+..+||||||||
T Consensus 76 ~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDE 155 (495)
T TIGR01241 76 NPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDE 155 (495)
T ss_pred CHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHH
Q 005304 332 IDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILK 411 (703)
Q Consensus 332 ID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~ 411 (703)
||.++.+++.+.++.+++..+++++||.+||++..+.+++||+|||+|+.||++++||||||+.|++++|+.++|.+|++
T Consensus 156 id~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~ 235 (495)
T TIGR01241 156 IDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILK 235 (495)
T ss_pred hhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHH
Confidence 99999888776666677888999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCcCCcc-cccCCcchhhh
Q 005304 412 VHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTV-MTDGKSKSLVA 490 (703)
Q Consensus 412 ~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~~g~~~~~-~~~~~~~~~va 490 (703)
.++++..+..++++..++..+.|||++||.++|++|+..|.++++..|+.+|+++|++++..+..... ..++++++.+|
T Consensus 236 ~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A 315 (495)
T TIGR01241 236 VHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVA 315 (495)
T ss_pred HHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHH
Confidence 99999888888899999999999999999999999999999999999999999999999998876543 34667889999
Q ss_pred HHHHHHHHHHhhcCCCCCcceeeeecCcccceEEEEccCCCCCcccHHHHHHHHHHhhchhhhhhhhcCCCCcccCccch
Q 005304 491 YHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGD 570 (703)
Q Consensus 491 ~hEaGhAlv~~~~~~~~~v~kvti~prg~a~G~~~~~p~~~~~~~t~~~l~~~i~~~lgGraAE~~~fg~~~~t~Ga~~D 570 (703)
+||+||||++++++..+++++++|.|||.++||+++.|.++....|+.+++++|+++|||||||+++|| ++|+|+++|
T Consensus 316 ~hEaGhAlv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAE~~~~G--~~s~Ga~~D 393 (495)
T TIGR01241 316 YHEAGHALVGLLLKDADPVHKVTIIPRGQALGYTQFLPEEDKYLYTKSQLLAQIAVLLGGRAAEEIIFG--EVTTGASND 393 (495)
T ss_pred HHHHhHHHHHHhcCCCCceEEEEEeecCCccceEEecCccccccCCHHHHHHHHHHHhhHHHHHHHHhc--CCCCCchHH
Confidence 999999999999998899999999999999999999998878899999999999999999999999999 489999999
Q ss_pred HHHHHHHHHhhhccccccceEEeeccCC-CCcccccCCCCcchhHH-hhhhccccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 005304 571 LQQITGLAKQAHYFFFFLQMVTTFGMSE-IGPWSLMDGSQSGDVIM-RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALS 648 (703)
Q Consensus 571 l~~at~lA~~~~~~~~~~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~id~ev~~il~~ay~~A~~ 648 (703)
|++||++|+ .||.+|||++ +|++.+..... ..+++ .+...+++|+.++..||.||++++++||++|++
T Consensus 394 l~~At~lA~---------~mv~~~Gm~~~~g~~~~~~~~~-~~~l~~~~~~~~~~s~~~~~~id~~v~~lL~~a~~ra~~ 463 (495)
T TIGR01241 394 IKQATNIAR---------AMVTEWGMSDKLGPVAYGSDGG-DVFLGRGFAKAKEYSEETAREIDEEVKRIIEEAYKRAKQ 463 (495)
T ss_pred HHHHHHHHH---------HHHHHhCCCcccCceeeccCcc-ccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999998 99998865221 12442 233456899999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHhcccCHHHHHHHHh
Q 005304 649 QIRNNREAIDKIVEVLLEKETMSGDEFRAILS 680 (703)
Q Consensus 649 iL~~~r~~l~~la~~Lle~etL~g~ei~~il~ 680 (703)
+|++||+++++||++|+++|+|+++||++|++
T Consensus 464 lL~~~~~~l~~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 464 ILTENRDELELLAKALLEKETITREEIKELLA 495 (495)
T ss_pred HHHHhHHHHHHHHHHHHHcCeeCHHHHHHHhC
Confidence 99999999999999999999999999999974
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-62 Score=509.58 Aligned_cols=259 Identities=45% Similarity=0.770 Sum_probs=251.4
Q ss_pred ccccccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeec
Q 005304 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (703)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (703)
.+..+..|+++|+||.|+++++++++|.|+. |++|+.|..+|+++|+|||||||||||||+||||+|++.++.|+.+.+
T Consensus 139 ~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvg 218 (406)
T COG1222 139 VMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVG 218 (406)
T ss_pred eeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEecc
Confidence 4556778999999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005304 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (703)
Q Consensus 298 se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (703)
|+|+.+|+|++++.+|++|+.|+.++||||||||||+++.+|.....+++.+.++++.+||.+||||.+..+|-||+|||
T Consensus 219 SElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATN 298 (406)
T COG1222 219 SELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATN 298 (406)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred CcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCC
Q 005304 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA 457 (703)
Q Consensus 378 ~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~ 457 (703)
+++.|||||+|||||||.|+||+||.++|.+||+.|.+++.+..++|++.||+.|+|+|||||+++|.+|.++|.|+.+.
T Consensus 299 R~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~ 378 (406)
T COG1222 299 RPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRD 378 (406)
T ss_pred CccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHcCcCC
Q 005304 458 AISSKEIDDSIDRIVAGMEG 477 (703)
Q Consensus 458 ~It~~di~~Al~~v~~g~~~ 477 (703)
.||++||.+|++++......
T Consensus 379 ~Vt~~DF~~Av~KV~~~~~~ 398 (406)
T COG1222 379 EVTMEDFLKAVEKVVKKKKK 398 (406)
T ss_pred eecHHHHHHHHHHHHhcccc
Confidence 99999999999999876543
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=4.9e-55 Score=525.14 Aligned_cols=307 Identities=19% Similarity=0.313 Sum_probs=265.5
Q ss_pred hhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHH-------------------------------
Q 005304 256 FTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF------------------------------- 304 (703)
Q Consensus 256 ~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~------------------------------- 304 (703)
+.++|+++|+||||+||||||||+||||+|+++++||+.+++++|++.+
T Consensus 1622 slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~ 1701 (2281)
T CHL00206 1622 SLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTEL 1701 (2281)
T ss_pred HHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhh
Confidence 4578999999999999999999999999999999999999999998643
Q ss_pred ------------hhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc---CCCC
Q 005304 305 ------------VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---GNTG 369 (703)
Q Consensus 305 ------------~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~---~~~~ 369 (703)
.+++..+++.+|+.|++++||||||||||+++.+ +....++++|+.+||+.. ...+
T Consensus 1702 ~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~---------ds~~ltL~qLLneLDg~~~~~s~~~ 1772 (2281)
T CHL00206 1702 LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN---------ESNYLSLGLLVNSLSRDCERCSTRN 1772 (2281)
T ss_pred hhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC---------ccceehHHHHHHHhccccccCCCCC
Confidence 2233445899999999999999999999999754 223346899999999864 4568
Q ss_pred eEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHH--hcCCCCCcc-ccHHHHHHhCCCCcHHHHHHHHHH
Q 005304 370 IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH--GSNKKFDAD-VSLDVIAMRTPGFSGADLANLLNE 446 (703)
Q Consensus 370 ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~--l~~~~l~~d-vdl~~lA~~t~G~sgadL~~lv~e 446 (703)
|+||||||+|+.|||||+||||||+.|.|+.|+..+|++++..+ .++..+..+ +++..+|+.|+|||||||+++|+|
T Consensus 1773 VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNE 1852 (2281)
T CHL00206 1773 ILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNE 1852 (2281)
T ss_pred EEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998864 445555543 679999999999999999999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHcCcCCcccccCCcchhhhHHHHHHHHHHhhcCCCCCcceeeeecC------ccc
Q 005304 447 AAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPR------GQA 520 (703)
Q Consensus 447 Aa~~A~r~~~~~It~~di~~Al~~v~~g~~~~~~~~~~~~~~va~hEaGhAlv~~~~~~~~~v~kvti~pr------g~a 520 (703)
|+..|+++++..|+.++|+.|++++++|.+.... ..++ +.+++||+||||++.++++.+|+++|+|+++ |.+
T Consensus 1853 AaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~-~~~~-~~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~~~ 1930 (2281)
T CHL00206 1853 ALSISITQKKSIIDTNTIRSALHRQTWDLRSQVR-SVQD-HGILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDS 1930 (2281)
T ss_pred HHHHHHHcCCCccCHHHHHHHHHHHHhhhhhccc-Ccch-hhhhhhHHhHHHHHHhccCCCCcceEEEecCCccccCccc
Confidence 9999999999999999999999999999876543 2233 3479999999999999999999999999632 457
Q ss_pred ceEEEEccCCCCCcccHHHHHHHHHHhhchhhhhhhhcCCCCcccCccchHHHHHHHHHhhhccccccceEEeeccCC
Q 005304 521 RGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQAHYFFFFLQMVTTFGMSE 598 (703)
Q Consensus 521 ~G~~~~~p~~~~~~~t~~~l~~~i~~~lgGraAE~~~fg~~~~t~Ga~~Dl~~at~lA~~~~~~~~~~~mv~~~Gm~~ 598 (703)
+||+|++|.+ +.++|.+++.+|++||||||||++||+... .|+ .||+.|||++
T Consensus 1931 yl~~wyle~~--~~mkk~tiL~~Il~cLAGraAedlwf~~~~--------------~~~---------n~It~yg~vE 1983 (2281)
T CHL00206 1931 YLYKWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSLPGP--------------DEK---------NGITSYGLVE 1983 (2281)
T ss_pred ceeEeecCCc--ccCCHHHHHHHHHHHhhhhhhhhhccCcch--------------hhh---------cCcccccchh
Confidence 7999999965 799999999999999999999999997522 456 7888888875
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-50 Score=447.88 Aligned_cols=249 Identities=45% Similarity=0.774 Sum_probs=236.9
Q ss_pred ccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
.+.++++|+||+|+++.|++|++.|.+ +++|+.|.++|..+|+|||||||||||||++|||+|++++++|+++.+.++.
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 466899999999999999999999988 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccc
Q 005304 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (703)
Q Consensus 302 ~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 381 (703)
++|+|++++.++++|++|++.+|||||+||||+++..|+... +...++++++||++|||+....+|+||||||+|+.
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~---~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ 582 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS---SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDM 582 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc---cchHHHHHHHHHHHcccccccCcEEEEeccCChhh
Confidence 999999999999999999999999999999999999997432 25678899999999999999999999999999999
Q ss_pred ccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC--CCc
Q 005304 382 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK--AAI 459 (703)
Q Consensus 382 LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~--~~I 459 (703)
||+||+||||||+.|+|++||.+.|.+||+.+++++++.+++|++.||..|+|||||||.++|++|+..|.+++- ..|
T Consensus 583 ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i 662 (693)
T KOG0730|consen 583 IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEI 662 (693)
T ss_pred cCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999854 578
Q ss_pred CHHHHHHHHHHHHcC
Q 005304 460 SSKEIDDSIDRIVAG 474 (703)
Q Consensus 460 t~~di~~Al~~v~~g 474 (703)
+.+||++|+..+...
T Consensus 663 ~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 663 TWQHFEEALKAVRPS 677 (693)
T ss_pred cHHHHHHHHHhhccc
Confidence 999999999876444
No 10
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-50 Score=399.79 Aligned_cols=323 Identities=34% Similarity=0.576 Sum_probs=291.3
Q ss_pred CCCcHHHHHHHHhcCcceeeccCCCcchhhHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccccccccc
Q 005304 143 PGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQM 222 (703)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 222 (703)
|-.-.++++...++.-.+.....+ +|++.+++.+.--++.....+.+++.++...+ -.|.....|-..+..
T Consensus 76 plvigqfle~vdqnt~ivgsttgs----ny~vrilstidrellkps~svalhrhsnalvd-----vlppeadssi~ml~~ 146 (408)
T KOG0727|consen 76 PLVIGQFLEAVDQNTAIVGSTTGS----NYYVRILSTIDRELLKPSASVALHRHSNALVD-----VLPPEADSSISMLGP 146 (408)
T ss_pred chHHHHHHHhhhccCceeecccCC----ceEEeehhhhhHHHcCCccchhhhhcccceee-----ccCCcccccccccCC
Confidence 433356666666665545443322 78899999988899999989999988775422 233344555556667
Q ss_pred ccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
..++++++.||.|+|-.|+++++.++. +.+.+.|++.|+++|+|||||||||||||+||+|+|+.....|+.+.+++|+
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 788999999999999999999999997 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccc
Q 005304 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (703)
Q Consensus 302 ~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 381 (703)
.+|.|++...+|++|+.|++++|+||||||||+++.+|-....+.+.+.++++.+||++||||....+|-||.+||+.+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt 306 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT 306 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc
Confidence 99999999999999999999999999999999999999888888899999999999999999999999999999999999
Q ss_pred ccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCH
Q 005304 382 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISS 461 (703)
Q Consensus 382 LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~ 461 (703)
|||+|+||||+||.|+||+||.++++-++.....++.+++++|++.+..+.+..|++||..+|++|.+.|.|.++-.|..
T Consensus 307 ldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~ 386 (408)
T KOG0727|consen 307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQ 386 (408)
T ss_pred cCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 005304 462 KEIDDSIDRIVAG 474 (703)
Q Consensus 462 ~di~~Al~~v~~g 474 (703)
.||++|...++..
T Consensus 387 kd~e~ay~~~vk~ 399 (408)
T KOG0727|consen 387 KDFEKAYKTVVKK 399 (408)
T ss_pred HHHHHHHHhhcCC
Confidence 9999999876544
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-48 Score=422.50 Aligned_cols=248 Identities=44% Similarity=0.740 Sum_probs=231.0
Q ss_pred CCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH
Q 005304 225 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (703)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~ 303 (703)
-|+++|+||.|+++++.+|...+.+ +++|+.|+.+|+..|.|||||||||||||+||||+|+|++.+|+.+.+.++.++
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence 3789999999999999999987665 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccccc
Q 005304 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (703)
Q Consensus 304 ~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 383 (703)
|+|+++..+|.+|..|+.++|||||+||||+|+++|+.+. .....+++||||++|||...+.+|.||||||+||.+|
T Consensus 585 YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiID 661 (802)
T KOG0733|consen 585 YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIID 661 (802)
T ss_pred HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCcccc
Confidence 9999999999999999999999999999999999998643 5567889999999999999999999999999999999
Q ss_pred ccccCCCccceeeeecCCChhhHHHHHHHHhc--CCCCCccccHHHHHHhCC--CCcHHHHHHHHHHHHHHHHHhC----
Q 005304 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGS--NKKFDADVSLDVIAMRTP--GFSGADLANLLNEAAILAGRRG---- 455 (703)
Q Consensus 384 ~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~--~~~l~~dvdl~~lA~~t~--G~sgadL~~lv~eAa~~A~r~~---- 455 (703)
||++||||||+..++++|+..+|.+||+.+.+ +.+++.|+|++.||+.+. |||||||..||++|...|.++.
T Consensus 662 pAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~ 741 (802)
T KOG0733|consen 662 PAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEI 741 (802)
T ss_pred hhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999 778999999999999877 9999999999999999998751
Q ss_pred ------------CCCcCHHHHHHHHHHHHcCc
Q 005304 456 ------------KAAISSKEIDDSIDRIVAGM 475 (703)
Q Consensus 456 ------------~~~It~~di~~Al~~v~~g~ 475 (703)
...++..||++|+.++.+..
T Consensus 742 ~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 742 DSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred cccCcccceeeeeeeecHHHHHHHHHhcCCCc
Confidence 11356779999998875543
No 12
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-48 Score=397.56 Aligned_cols=300 Identities=34% Similarity=0.610 Sum_probs=275.0
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccCCCccccccccchHHHHHHHHHHHH-
Q 005304 171 SLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF- 249 (703)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~- 249 (703)
.|++++++.+..-+|-.++.+++..+.....|-..+...||.. .+..++.|.-+|+|+.|++.+.+++.+.++.
T Consensus 130 e~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~dpmv~-----vmK~eKaP~Ety~diGGle~QiQEiKEsvELP 204 (440)
T KOG0726|consen 130 EYYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPMVS-----VMKVEKAPQETYADIGGLESQIQEIKESVELP 204 (440)
T ss_pred hheeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCCccce-----eeecccCchhhhcccccHHHHHHHHHHhhcCC
Confidence 5788999888889999998888777655433222222233322 2345677788999999999999999999997
Q ss_pred hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEE
Q 005304 250 LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFV 329 (703)
Q Consensus 250 l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfI 329 (703)
|.+|+.|..+|+++|+||+|||+||||||+||+|+|+.....|+.+-+++++.+|.|.+++.+|++|+-|..++|+|+||
T Consensus 205 LthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFi 284 (440)
T KOG0726|consen 205 LTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFI 284 (440)
T ss_pred CCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHH
Q 005304 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEI 409 (703)
Q Consensus 330 DEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~I 409 (703)
||||++|.+|-...+++..+.++++.+||+++|||.++..|-||.|||+.+.|||+|+||||+||.|+|+.||...++.|
T Consensus 285 DEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkI 364 (440)
T KOG0726|consen 285 DEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKI 364 (440)
T ss_pred ehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhcee
Confidence 99999999998888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCc
Q 005304 410 LKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGM 475 (703)
Q Consensus 410 L~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~~g~ 475 (703)
|..|..++.+..+++++.+...-+.+|||||..+|.+|.++|.|..+..++++||..|.++++...
T Consensus 365 f~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 365 FQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred EEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999987654
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-46 Score=372.09 Aligned_cols=255 Identities=41% Similarity=0.714 Sum_probs=246.4
Q ss_pred ccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
++-|+-+++-+.|.+.+.++++++++. .++|+.|..+|+..|+|+|||||||||||+||+++|+...+.|+.+++++++
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 455677899999999999999999997 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccc
Q 005304 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (703)
Q Consensus 302 ~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 381 (703)
.+|.|++...+|++|-.|++++|+|||.||||.+|..|..+.++++++.+++..+||+++|||+...++-||.|||+.+.
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi 298 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 298 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred ccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCH
Q 005304 382 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISS 461 (703)
Q Consensus 382 LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~ 461 (703)
|||||+||||+||.|+||+|+.+.|.+||+.|.+++.+...+++..+|...+|.||+++..+|.+|.++|.|+.+-.+|+
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtq 378 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQ 378 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCcCC
Q 005304 462 KEIDDSIDRIVAGMEG 477 (703)
Q Consensus 462 ~di~~Al~~v~~g~~~ 477 (703)
+||+-|+.+++.....
T Consensus 379 edfemav~kvm~k~~e 394 (404)
T KOG0728|consen 379 EDFEMAVAKVMQKDSE 394 (404)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999998876543
No 14
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-46 Score=376.24 Aligned_cols=266 Identities=41% Similarity=0.714 Sum_probs=252.6
Q ss_pred ccccccccccccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC
Q 005304 213 FGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP 291 (703)
Q Consensus 213 ~~~s~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p 291 (703)
...|...+..+..+++|+.|+.|+.+.++.++|+++. +-+|++|..+|+.+|+|||||||||||||++|||+|+..+.-
T Consensus 159 idpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac 238 (435)
T KOG0729|consen 159 IDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC 238 (435)
T ss_pred CCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce
Confidence 4455556677888999999999999999999999997 899999999999999999999999999999999999999999
Q ss_pred EEEeechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeE
Q 005304 292 FFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGII 371 (703)
Q Consensus 292 fi~is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~Vi 371 (703)
|+.+-+|+++.+|+|+++..+|++|+.|+....||||+||||++++.|-....+++.+.+++..+|+.++|||..+.++-
T Consensus 239 firvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnik 318 (435)
T KOG0729|consen 239 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIK 318 (435)
T ss_pred EEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeE
Confidence 99999999999999999999999999999999999999999999999976656677889999999999999999999999
Q ss_pred EEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005304 372 VIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (703)
Q Consensus 372 VIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A 451 (703)
|+.+||+|+.|||+|+||||+||.++|.+||.++|..|++.|.+.+....++-++.+|+.++.-+|++|+.+|.+|.+.|
T Consensus 319 vlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfa 398 (435)
T KOG0729|consen 319 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA 398 (435)
T ss_pred EEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCcCHHHHHHHHHHHHcCcCCc
Q 005304 452 GRRGKAAISSKEIDDSIDRIVAGMEGT 478 (703)
Q Consensus 452 ~r~~~~~It~~di~~Al~~v~~g~~~~ 478 (703)
.+..+...|..||.+|+++++.|..+-
T Consensus 399 irarrk~atekdfl~av~kvvkgy~kf 425 (435)
T KOG0729|consen 399 IRARRKVATEKDFLDAVNKVVKGYAKF 425 (435)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999886553
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-46 Score=375.20 Aligned_cols=256 Identities=38% Similarity=0.689 Sum_probs=244.6
Q ss_pred ccccccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeec
Q 005304 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (703)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (703)
.+..+..|.-+++||.|++.++++|.+.+.. +.++++|..+|+++|+|+|+|||||||||++|||.|...+..|+.+.+
T Consensus 159 aMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAg 238 (424)
T KOG0652|consen 159 AMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAG 238 (424)
T ss_pred eeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcc
Confidence 3445566778999999999999999986654 899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005304 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (703)
Q Consensus 298 se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (703)
..++.+|.|.+++.+|+.|..|++.+|+||||||+|++|.+|......++.+.+++..+||+++|||.++..|-||++||
T Consensus 239 PQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATN 318 (424)
T KOG0652|consen 239 PQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATN 318 (424)
T ss_pred hHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecc
Confidence 99999999999999999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred CcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCC
Q 005304 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA 457 (703)
Q Consensus 378 ~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~ 457 (703)
+.+.|||+|+|+||+||.|+||.|+.+.|.+|++.|.+++...+|++++++|+.|++|+|++...+|-+|.+.|.|++..
T Consensus 319 RvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~at 398 (424)
T KOG0652|consen 319 RVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGAT 398 (424)
T ss_pred cccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHcC
Q 005304 458 AISSKEIDDSIDRIVAG 474 (703)
Q Consensus 458 ~It~~di~~Al~~v~~g 474 (703)
.|+.+||.+++..+...
T Consensus 399 ev~heDfmegI~eVqak 415 (424)
T KOG0652|consen 399 EVTHEDFMEGILEVQAK 415 (424)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 99999999999877544
No 16
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-45 Score=402.65 Aligned_cols=228 Identities=46% Similarity=0.778 Sum_probs=217.3
Q ss_pred cCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~ 303 (703)
+.++++|.||.|++....+|.+++..+++|+.|..+|..+|+|||||||||||||+||+|+|+++++||+.+++.++++.
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCC----CCeEEEEecCCc
Q 005304 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN----TGIIVIAATNRA 379 (703)
Q Consensus 304 ~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~----~~ViVIaaTN~p 379 (703)
+.|++++++|++|++|+..+|||+||||||+++++|.. ++.+..++++.|||+.||++... ..|+||+|||+|
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~---aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE---AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh---HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 99999999999999999999999999999999999975 24455678999999999998654 579999999999
Q ss_pred ccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005304 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (703)
Q Consensus 380 ~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~ 454 (703)
|.|||+|+|+||||+.|.+..|+..+|.+||+..+++..++.++|+..||+.|+||.||||..||.+|+..|.+|
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876
No 17
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.7e-42 Score=379.54 Aligned_cols=254 Identities=41% Similarity=0.688 Sum_probs=239.0
Q ss_pred cccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhH
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~ 300 (703)
....++++|+||+|++.+|+++++.+.. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 136 ~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l 215 (398)
T PTZ00454 136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF 215 (398)
T ss_pred ccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 3456889999999999999999999874 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcc
Q 005304 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (703)
Q Consensus 301 ~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 380 (703)
...|.|.+...++++|..|+..+||||||||||.++.+|.....+.+.+.+..+.+|+.++|++....+++||+|||+++
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch
Confidence 99999999999999999999999999999999999988765444455677789999999999998888999999999999
Q ss_pred cccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcC
Q 005304 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAIS 460 (703)
Q Consensus 381 ~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It 460 (703)
.+|++++||||||+.|+|++|+.++|..||+.++.+..+..++++..++..|+||||+||.++|++|.+.|.++++..|+
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~ 375 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVIL 375 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCc
Q 005304 461 SKEIDDSIDRIVAGM 475 (703)
Q Consensus 461 ~~di~~Al~~v~~g~ 475 (703)
.+||.+|+++++.+.
T Consensus 376 ~~df~~A~~~v~~~~ 390 (398)
T PTZ00454 376 PKDFEKGYKTVVRKT 390 (398)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987653
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=4.5e-43 Score=352.49 Aligned_cols=241 Identities=38% Similarity=0.669 Sum_probs=224.8
Q ss_pred ccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
+..++++|+||+|++++|+.-+-++++|.+|++|..+ .|++||+|||||||||++|||+|+++++||+.+...+++.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 4457899999999999999999999999999998766 5889999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005304 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (703)
Q Consensus 303 ~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (703)
.++|.++++++++|+.|++.+|||+||||+|+++-.|....-.+ ....++|.||++||+...+.+|+.||+||+|+.|
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRG--DVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L 267 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRG--DVSEIVNALLTELDGIKENEGVVTIAATNRPELL 267 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcc--cHHHHHHHHHHhccCcccCCceEEEeecCChhhc
Confidence 99999999999999999999999999999999987664322111 2456899999999999999999999999999999
Q ss_pred cccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHH-HHHHHHHHHHHHhCCCCcCH
Q 005304 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLA-NLLNEAAILAGRRGKAAISS 461 (703)
Q Consensus 383 D~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~-~lv~eAa~~A~r~~~~~It~ 461 (703)
|+++++ ||...|+|.+|+.++|..|++.+++..++.-+.++..++..|.|+||+||. .++..|.+.|..+++..|+.
T Consensus 268 D~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~ 345 (368)
T COG1223 268 DPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVER 345 (368)
T ss_pred CHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhH
Confidence 999999 999999999999999999999999999999999999999999999999996 68899999999999999999
Q ss_pred HHHHHHHHH
Q 005304 462 KEIDDSIDR 470 (703)
Q Consensus 462 ~di~~Al~~ 470 (703)
+||+.|+.+
T Consensus 346 edie~al~k 354 (368)
T COG1223 346 EDIEKALKK 354 (368)
T ss_pred HHHHHHHHh
Confidence 999999987
No 19
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-42 Score=387.13 Aligned_cols=252 Identities=39% Similarity=0.698 Sum_probs=226.6
Q ss_pred cccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhH
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~ 300 (703)
..+-|+++|+||.|.+++|.++++-++. |++|+.|. .|.+...|||||||||||||++|||+|.|+...|+.+.+.++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 3456899999999999999999999987 89998765 577778899999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc--CCCCeEEEEecCC
Q 005304 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--GNTGIIVIAATNR 378 (703)
Q Consensus 301 ~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~--~~~~ViVIaaTN~ 378 (703)
.+||+|++++++|++|++|+..+|||||+||+|.++++|+...+.| .-.++++.|||.+||++. +..+|+||+||||
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSG-GVMDRVVSQLLAELDgls~~~s~~VFViGATNR 820 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSG-GVMDRVVSQLLAELDGLSDSSSQDVFVIGATNR 820 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcc-ccHHHHHHHHHHHhhcccCCCCCceEEEecCCC
Confidence 9999999999999999999999999999999999999998743332 347789999999999997 5678999999999
Q ss_pred cccccccccCCCccceeeeecCCC-hhhHHHHHHHHhcCCCCCccccHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHhC-
Q 005304 379 ADILDSALLRPGRFDRQVTVDVPD-IRGRTEILKVHGSNKKFDADVSLDVIAMRTP-GFSGADLANLLNEAAILAGRRG- 455 (703)
Q Consensus 379 p~~LD~aLlRpgRfdr~I~i~~Pd-~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~-G~sgadL~~lv~eAa~~A~r~~- 455 (703)
||.|||+|+||||||+.+++.+++ .+.+..+|+...++..++.++|+.++|++++ .|||||+-.+|-.|.+.|.+|.
T Consensus 821 PDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i 900 (953)
T KOG0736|consen 821 PDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTI 900 (953)
T ss_pred ccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999985 5558889999999999999999999999975 7999999999999999998862
Q ss_pred ----------------CCCcCHHHHHHHHHHHHcCc
Q 005304 456 ----------------KAAISSKEIDDSIDRIVAGM 475 (703)
Q Consensus 456 ----------------~~~It~~di~~Al~~v~~g~ 475 (703)
.-.|+++||.++.++..+..
T Consensus 901 ~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 901 HDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSV 936 (953)
T ss_pred HHhhhccccccccCCceEEEEHHHHHHHHHhcCCcc
Confidence 12468899999988865543
No 20
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-42 Score=362.64 Aligned_cols=247 Identities=37% Similarity=0.622 Sum_probs=224.6
Q ss_pred ccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
..+++++|+||+|+.++|+-|+|.|-. +..|+.|+. ..+|.||||++||||||||+||||+|.|++..||.|+.+.+.
T Consensus 204 ~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 204 QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 356889999999999999999997765 888887763 356779999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCC-CC---eEEEEecC
Q 005304 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN-TG---IIVIAATN 377 (703)
Q Consensus 302 ~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~-~~---ViVIaaTN 377 (703)
++|.|++++.+|-+|+.|+.++|++|||||||+|+.+|+.. +.++...++-++||.+|||.... .+ |+|+||||
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN 360 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN 360 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEeccC
Confidence 99999999999999999999999999999999999999763 56788889999999999998653 23 89999999
Q ss_pred CcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC-
Q 005304 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK- 456 (703)
Q Consensus 378 ~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~- 456 (703)
.|+.||+||+| ||.+.|+|++||.++|..+|+..++....+++++++.|+.+++||||+||.++|++|.+.+.||..
T Consensus 361 ~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~ 438 (491)
T KOG0738|consen 361 FPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIA 438 (491)
T ss_pred CCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 999999999999999999999999999999999999999999999999999999999999998621
Q ss_pred ----------------CCcCHHHHHHHHHHHHcC
Q 005304 457 ----------------AAISSKEIDDSIDRIVAG 474 (703)
Q Consensus 457 ----------------~~It~~di~~Al~~v~~g 474 (703)
..|+++||++|+.++.+.
T Consensus 439 g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pS 472 (491)
T KOG0738|consen 439 GLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPS 472 (491)
T ss_pred cCCcHHhhhhhhhccccccchhhHHHHHHHcCcC
Confidence 347788888888876444
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=6.8e-41 Score=369.02 Aligned_cols=257 Identities=46% Similarity=0.755 Sum_probs=240.8
Q ss_pred cccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhH
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~ 300 (703)
....+.++|+||+|.+++++++.+.+.. +.+++.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 3456789999999999999999998876 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcc
Q 005304 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (703)
Q Consensus 301 ~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 380 (703)
...|.|.+...++.+|+.|+.++||||||||||.++.++......+..+.++.+.+++.+++++....+++||+|||+++
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~ 281 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID 281 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh
Confidence 99999999999999999999999999999999999988876555556677888999999999998888999999999999
Q ss_pred cccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcC
Q 005304 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAIS 460 (703)
Q Consensus 381 ~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It 460 (703)
.+|++++||||||+.|+|++|+.++|.+||+.++++..+..++++..++..|.||+|+||+++|++|+..|.+++...|+
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~ 361 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVT 361 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 99999999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcCCc
Q 005304 461 SKEIDDSIDRIVAGMEGT 478 (703)
Q Consensus 461 ~~di~~Al~~v~~g~~~~ 478 (703)
.+||.+|++++.......
T Consensus 362 ~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 362 MEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred HHHHHHHHHHHhcccccc
Confidence 999999999987765544
No 22
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=1.8e-42 Score=351.79 Aligned_cols=210 Identities=41% Similarity=0.638 Sum_probs=178.9
Q ss_pred CHHHHHHHHHHHHcCcCCc-ccccCCcchhhhHHHHHHHHHHhhcCCCCCcceeeeecCcccceEEEEccCCCCCcccHH
Q 005304 460 SSKEIDDSIDRIVAGMEGT-VMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQ 538 (703)
Q Consensus 460 t~~di~~Al~~v~~g~~~~-~~~~~~~~~~va~hEaGhAlv~~~~~~~~~v~kvti~prg~a~G~~~~~p~~~~~~~t~~ 538 (703)
|++||++|+++++.|.+++ ...++++++++|+||+||||+++++++.+++.++||+|||.++||+.+.|.++....||.
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~ 80 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGSALGFTQFTPDEDRYIRTRS 80 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCCCCHCCEECHHTT-SS-BHH
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCCcceeEEeccchhcccccHH
Confidence 6899999999999999885 456788899999999999999999999899999999999999999999998888789999
Q ss_pred HHHHHHHHhhchhhhhhhhcCCCCcccCccchHHHHHHHHHhhhccccccceEEeeccCC-CCcccccCCCCcchhH-Hh
Q 005304 539 QLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQAHYFFFFLQMVTTFGMSE-IGPWSLMDGSQSGDVI-MR 616 (703)
Q Consensus 539 ~l~~~i~~~lgGraAE~~~fg~~~~t~Ga~~Dl~~at~lA~~~~~~~~~~~mv~~~Gm~~-~g~~~~~~~~~~~~~~-~~ 616 (703)
+++++|+++|||||||+++||.+++|+|+++||++||+||+ .||..||||+ +|++.+........|+ ..
T Consensus 81 ~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~---------~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~ 151 (213)
T PF01434_consen 81 YLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIAR---------KMVASYGMGDSLGLLSYSPNDDDEVFLGRE 151 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHH---------HHHHTST-TTTTTSS-SEEEE-S-SSS-E-
T ss_pred HHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHH---------HHHHHhCCCCCCceeeeecccccccccccc
Confidence 99999999999999999999988899999999999999999 9999999998 9999876522211233 22
Q ss_pred hhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHH
Q 005304 617 MMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAI 678 (703)
Q Consensus 617 ~~~~~~~s~~~~~~id~ev~~il~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~i 678 (703)
+....++|+.+...+|.||+++|++||++|++||++||+.|++||++|+++++|+++||++|
T Consensus 152 ~~~~~~~s~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 152 WNSRRPMSEETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp --EEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred ccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 33456899999999999999999999999999999999999999999999999999999986
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=368.98 Aligned_cols=253 Identities=39% Similarity=0.706 Sum_probs=239.0
Q ss_pred cccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhH
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~ 300 (703)
.++.+.++|+||.|++++++++.+.++. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL 253 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL 253 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence 4566789999999999999999999975 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcc
Q 005304 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (703)
Q Consensus 301 ~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 380 (703)
...|.|.+...++.+|+.|+.+.||||||||||.++.+|.....++..+.+.++.+||.++|++....++.||+|||+++
T Consensus 254 ~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d 333 (438)
T PTZ00361 254 IQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 333 (438)
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChH
Confidence 99999999999999999999999999999999999988866555566677888999999999998888999999999999
Q ss_pred cccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcC
Q 005304 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAIS 460 (703)
Q Consensus 381 ~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It 460 (703)
.+|++++||||||+.|+|++||.++|.+||+.++.+..+..++++..++..+.|+||+||.++|++|++.|.++++..|+
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt 413 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVT 413 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 005304 461 SKEIDDSIDRIVAG 474 (703)
Q Consensus 461 ~~di~~Al~~v~~g 474 (703)
.+||.+|+++++..
T Consensus 414 ~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 414 QADFRKAKEKVLYR 427 (438)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998654
No 24
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-40 Score=339.27 Aligned_cols=251 Identities=39% Similarity=0.673 Sum_probs=239.5
Q ss_pred cccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhH
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~ 300 (703)
.+...+++|+++.|.-++..++++.++. +.+|..|.++|+++|+|++||||||||||++|+++|...+++|+.++.+++
T Consensus 123 ~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~l 202 (388)
T KOG0651|consen 123 HEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSAL 202 (388)
T ss_pred hcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhh
Confidence 3456778999999999999999998876 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcc
Q 005304 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (703)
Q Consensus 301 ~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 380 (703)
.+.|.|++++.+|+.|..|+.+.|||||+||||++++.+.+.....+.+.+.++-.|+++||++.....|-+|+|||+|+
T Consensus 203 v~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpd 282 (388)
T KOG0651|consen 203 VDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPD 282 (388)
T ss_pred hhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcc
Confidence 99999999999999999999999999999999999999876666678899999999999999999999999999999999
Q ss_pred cccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcC
Q 005304 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAIS 460 (703)
Q Consensus 381 ~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It 460 (703)
.|||+|+||||+|+.+++|+|+...|..|++.|........++|.+.+.+..+||+|+|+.+.|.||-..|.+..+..+-
T Consensus 283 tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl 362 (388)
T KOG0651|consen 283 TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVL 362 (388)
T ss_pred ccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHh
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 005304 461 SKEIDDSIDRIV 472 (703)
Q Consensus 461 ~~di~~Al~~v~ 472 (703)
++|+..++.++.
T Consensus 363 ~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 363 HEDFMKLVRKQA 374 (388)
T ss_pred HHHHHHHHHHHH
Confidence 999999988763
No 25
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-39 Score=356.83 Aligned_cols=228 Identities=44% Similarity=0.755 Sum_probs=216.6
Q ss_pred cCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
+.+++.|+||.|+.++|+.+++.+++ -+.|..|...+.+.+.|||||||||||||+||-++|..++..|+.+.+.++.+
T Consensus 660 k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~ 739 (952)
T KOG0735|consen 660 KSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS 739 (952)
T ss_pred ccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH
Confidence 44569999999999999999999998 67889999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005304 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (703)
Q Consensus 303 ~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (703)
+|.|.+++.+|++|..|+..+|||||+||+|.++++|+-...|. .++++||||++|||.+.-.+|.|+|||.+|+.+
T Consensus 740 KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGV---TDRVVNQlLTelDG~Egl~GV~i~aaTsRpdli 816 (952)
T KOG0735|consen 740 KYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGV---TDRVVNQLLTELDGAEGLDGVYILAATSRPDLI 816 (952)
T ss_pred HHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCc---hHHHHHHHHHhhccccccceEEEEEecCCcccc
Confidence 99999999999999999999999999999999999998654443 467999999999999999999999999999999
Q ss_pred cccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005304 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (703)
Q Consensus 383 D~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~ 454 (703)
||||+||||+|+.++.++|+..+|.+|++........+.++|++.+|..|+|||||||..++..|.+.|.++
T Consensus 817 DpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 817 DPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred CHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988764
No 26
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-38 Score=362.18 Aligned_cols=245 Identities=48% Similarity=0.787 Sum_probs=229.5
Q ss_pred cCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
..+.++|+|++|.+++|+++++.+++ ++.++.|...|.++|+|+|||||||||||++|+++|.+++.+|+.+.++++.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 45789999999999999999999988 78899999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005304 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (703)
Q Consensus 303 ~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (703)
+|+|++++.++.+|..|++.+||||||||+|++.+.|+...+ .....++++||.+|++.....+|+||+|||+|+.+
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~---~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~l 391 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED---GSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDL 391 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc---hHHHHHHHHHHHHhcCCCccCceEEEecCCCcccc
Confidence 999999999999999999999999999999999998875322 22368999999999999999999999999999999
Q ss_pred cccccCCCccceeeeecCCChhhHHHHHHHHhcCCC--CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC-CCCc
Q 005304 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK--FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG-KAAI 459 (703)
Q Consensus 383 D~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~--l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~-~~~I 459 (703)
|++++||||||+.++|++||..+|.+|++.|++... +..++++..++..|+||+|+||.++|++|++.+.++. ...|
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~ 471 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREV 471 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999999544 4678999999999999999999999999999999998 7889
Q ss_pred CHHHHHHHHHHH
Q 005304 460 SSKEIDDSIDRI 471 (703)
Q Consensus 460 t~~di~~Al~~v 471 (703)
+++||.+|+.++
T Consensus 472 ~~~~~~~a~~~~ 483 (494)
T COG0464 472 TLDDFLDALKKI 483 (494)
T ss_pred cHHHHHHHHHhc
Confidence 999999999884
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=3.6e-38 Score=344.82 Aligned_cols=252 Identities=47% Similarity=0.780 Sum_probs=234.9
Q ss_pred cccccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeech
Q 005304 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (703)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s 298 (703)
+.....+.++|+||+|.+++++++.+.+.. +.+++.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++
T Consensus 111 ~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~ 190 (364)
T TIGR01242 111 MEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 190 (364)
T ss_pred ceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchH
Confidence 344566889999999999999999998875 8999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 299 e~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
++...+.|.+...++.+|+.++...||||||||+|.++.++.....++..+.+..+.+++.+++++....++.||+|||+
T Consensus 191 ~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~ 270 (364)
T TIGR01242 191 ELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNR 270 (364)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCC
Confidence 99999999999999999999999999999999999998877654444566677889999999999887789999999999
Q ss_pred cccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCC
Q 005304 379 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAA 458 (703)
Q Consensus 379 p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~ 458 (703)
++.+|++++||||||+.|+|+.|+.++|.+|++.++.+..+..++++..++..+.||+|+||.++|++|+..|.++++..
T Consensus 271 ~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~ 350 (364)
T TIGR01242 271 PDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDY 350 (364)
T ss_pred hhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHH
Q 005304 459 ISSKEIDDSIDRI 471 (703)
Q Consensus 459 It~~di~~Al~~v 471 (703)
|+.+||.+|++++
T Consensus 351 i~~~d~~~a~~~~ 363 (364)
T TIGR01242 351 VTMDDFIKAVEKV 363 (364)
T ss_pred cCHHHHHHHHHHh
Confidence 9999999999875
No 28
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.8e-38 Score=375.61 Aligned_cols=248 Identities=44% Similarity=0.760 Sum_probs=229.6
Q ss_pred CCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH
Q 005304 225 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (703)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~ 303 (703)
.+.++|+||+|++.+|++|.+.+.+ +++++.|..+|.++|+|+|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 4678999999999999999999986 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccccc
Q 005304 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (703)
Q Consensus 304 ~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 383 (703)
|+|+++..++.+|+.|+..+||||||||||.+++.|+... .....+..+++||.+||++....+++||+|||+|+.||
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~--~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld 604 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF--DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILD 604 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC--CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCC
Confidence 9999999999999999999999999999999998886432 23356779999999999998888999999999999999
Q ss_pred ccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC--------
Q 005304 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG-------- 455 (703)
Q Consensus 384 ~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~-------- 455 (703)
++++||||||+.|++++||.++|.+||+.+.++.++..++++..+|..|.||||+||.++|++|+..|.++.
T Consensus 605 ~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~ 684 (733)
T TIGR01243 605 PALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEK 684 (733)
T ss_pred HhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998842
Q ss_pred ----------CCCcCHHHHHHHHHHHHcC
Q 005304 456 ----------KAAISSKEIDDSIDRIVAG 474 (703)
Q Consensus 456 ----------~~~It~~di~~Al~~v~~g 474 (703)
...|+.+||.+|+.++.+.
T Consensus 685 ~~~~~~~~~~~~~i~~~~f~~al~~~~ps 713 (733)
T TIGR01243 685 LEVGEEEFLKDLKVEMRHFLEALKKVKPS 713 (733)
T ss_pred hhcccccccccCcccHHHHHHHHHHcCCC
Confidence 1268999999999876443
No 29
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.2e-37 Score=349.90 Aligned_cols=243 Identities=26% Similarity=0.445 Sum_probs=215.0
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHH
Q 005304 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (703)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~ 304 (703)
.++++|+||+|++.+|+++.+....+ +..+...|.+.|+|+|||||||||||++|+++|++++.||+.++++.+..++
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 35678999999999999999866543 2345678999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccc
Q 005304 305 VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (703)
Q Consensus 305 ~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 384 (703)
+|.++.+++++|+.|+..+||||||||||.++..+... +......+++++|+..|+. .+.+|+||+|||+++.||+
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPL 375 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCH
Confidence 99999999999999999999999999999997654321 2334567788999998884 3567999999999999999
Q ss_pred cccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC--ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHH
Q 005304 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD--ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSK 462 (703)
Q Consensus 385 aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~--~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~ 462 (703)
+++|+||||+.++|++|+.++|.+||+.|+.+.... .+.+++.+|..|.||||+||+++|++|...|..++ ..++.+
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~ 454 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTTD 454 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCHH
Confidence 999999999999999999999999999999886533 47889999999999999999999999999998776 468999
Q ss_pred HHHHHHHHHHcC
Q 005304 463 EIDDSIDRIVAG 474 (703)
Q Consensus 463 di~~Al~~v~~g 474 (703)
||..|+.++.+-
T Consensus 455 dl~~a~~~~~Pl 466 (489)
T CHL00195 455 DILLALKQFIPL 466 (489)
T ss_pred HHHHHHHhcCCC
Confidence 999999987654
No 30
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-38 Score=323.33 Aligned_cols=227 Identities=35% Similarity=0.632 Sum_probs=205.5
Q ss_pred cccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhH
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~ 300 (703)
....|++.|+||+|.+.+|+.|+|.|-. ++.|+.|.. +.++.+|+||||||||||++||+|+|.|++..||.++.+++
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 3467899999999999999999997754 788877652 34566899999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccC-CCCeEEEEecCCc
Q 005304 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRA 379 (703)
Q Consensus 301 ~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~-~~~ViVIaaTN~p 379 (703)
+++|.|++++.++++|+.|+++.|+||||||||.++..|+.+ .++...++-.+||.+|.|... +.+|+|++|||-|
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en---EseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiP 279 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN---ESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP 279 (439)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC---chHHHHHHHHHHHHhhhccccCCCceEEEecCCCc
Confidence 999999999999999999999999999999999999888753 456677888999999999865 5589999999999
Q ss_pred ccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005304 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (703)
Q Consensus 380 ~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~ 454 (703)
+.||.|++| ||++.|+||+|+...|..+++.|+...+.. .+.|+..|+++|+||||+||.-+|+.|.+.-.|+
T Consensus 280 w~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 280 WVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred hhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 999999999 999999999999999999999999887654 5678999999999999999999999999888775
No 31
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-37 Score=321.51 Aligned_cols=226 Identities=40% Similarity=0.638 Sum_probs=209.9
Q ss_pred cCCCccccccccchHHHHHHHHHHHH-hcCchhhhhcc-CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIG-ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg-~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
..-.++|+||.|.+++++++++.|-. ++.|+.|..-+ .++|+|||||||||||||.+|+|+|.++|.+|+.++.+.+.
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt 164 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLT 164 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccc
Confidence 34578999999999999999997765 89999886333 36889999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCC--eEEEEecCCc
Q 005304 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG--IIVIAATNRA 379 (703)
Q Consensus 302 ~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~--ViVIaaTN~p 379 (703)
++|.|++.+.++.+|..|.+-+||||||||+|.+.+.|. .+.++.....-++|....||+.++.+ |+|+||||+|
T Consensus 165 ~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP 241 (386)
T KOG0737|consen 165 SKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRP 241 (386)
T ss_pred hhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCC
Confidence 999999999999999999999999999999999998884 34577777888999999999988775 9999999999
Q ss_pred ccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005304 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (703)
Q Consensus 380 ~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~ 454 (703)
..||.|++| |+.++++|++|+..+|.+||+..+++.++++++|+..+|..|.||||.||.++|..|++..++.
T Consensus 242 ~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 242 FDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred ccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999998875
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=6.9e-35 Score=327.32 Aligned_cols=256 Identities=34% Similarity=0.591 Sum_probs=212.6
Q ss_pred cccccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------
Q 005304 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------- 291 (703)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p------- 291 (703)
+..+..++++|+||+|++++++++++.+.. +.+|+.|..+|.++|+|+|||||||||||++|+++|++++.+
T Consensus 171 l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~ 250 (512)
T TIGR03689 171 LVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGD 250 (512)
T ss_pred ceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCC
Confidence 345667889999999999999999998875 889999999999999999999999999999999999998654
Q ss_pred ---EEEeechhHHHHHhhhhhhHHHHHHHHHHhc----CCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCc
Q 005304 292 ---FFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 364 (703)
Q Consensus 292 ---fi~is~se~~~~~~G~~~~~ir~lF~~A~~~----aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~ 364 (703)
|+.++++++..+|.|.++..++.+|+.++.. .||||||||+|.++.+|+.+. +++....++++||.+||++
T Consensus 251 ~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~--s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 251 KSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV--SSDVETTVVPQLLSELDGV 328 (512)
T ss_pred ceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc--cchHHHHHHHHHHHHhccc
Confidence 6677788899999999999999999998764 699999999999998886532 2344467889999999999
Q ss_pred cCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCC-CCCc---------cccHHHHHH----
Q 005304 365 EGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK-KFDA---------DVSLDVIAM---- 430 (703)
Q Consensus 365 ~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~-~l~~---------dvdl~~lA~---- 430 (703)
....+++||+|||+++.|||+++||||||++|+|++|+.++|.+||+.++... ++.. ..++..+++
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999998652 3311 111222221
Q ss_pred -------------------------hCCCCcHHHHHHHHHHHHHHHHHh----CCCCcCHHHHHHHHHHHHcCcCC
Q 005304 431 -------------------------RTPGFSGADLANLLNEAAILAGRR----GKAAISSKEIDDSIDRIVAGMEG 477 (703)
Q Consensus 431 -------------------------~t~G~sgadL~~lv~eAa~~A~r~----~~~~It~~di~~Al~~v~~g~~~ 477 (703)
.++.+||++|+++|.+|...|.++ +...|+.+|+..|+..-....+.
T Consensus 409 ~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~ 484 (512)
T TIGR03689 409 HLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESED 484 (512)
T ss_pred HHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhccccc
Confidence 145688888888888888888765 44578888888888776554443
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-35 Score=327.02 Aligned_cols=346 Identities=33% Similarity=0.540 Sum_probs=277.3
Q ss_pred CCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHH
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~ 304 (703)
.+++ +++.|.......+++.+.. +.++..|...|.++|+|+|+|||||||||.+++++|++.++.++.+++++++.++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5677 8999999999999999987 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhcC-CeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccccc
Q 005304 305 VGVGASRVRDLFKKAKENA-PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (703)
Q Consensus 305 ~G~~~~~ir~lF~~A~~~a-P~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 383 (703)
.|++++.+|..|++|.+++ |+||||||||+++++|... .....++..+|+..||+.....+++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~----~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA----DDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc----chHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999999 9999999999999988652 2236678899999999999889999999999999999
Q ss_pred ccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHH
Q 005304 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKE 463 (703)
Q Consensus 384 ~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d 463 (703)
++++| ||||+.+.+..|+..+|.+|++.+.+++++..++++..+|..|.||.|+||..+|++|...+.++ ++++
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~ 408 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEI 408 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHH
Confidence 99999 99999999999999999999999999999998899999999999999999999999999999988 8999
Q ss_pred HHHHHHHHHcCcCCcccccCCcchhhhHHHHH------HH---HHHhhcCCCCCcceeeeecCcccceEEEE-ccCCCCC
Q 005304 464 IDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVG------HA---ICGTLTPGHDPVQKVTLVPRGQARGLTWF-IPSDDPT 533 (703)
Q Consensus 464 i~~Al~~v~~g~~~~~~~~~~~~~~va~hEaG------hA---lv~~~~~~~~~v~kvti~prg~a~G~~~~-~p~~~~~ 533 (703)
|..|..++.+...+....+ ...+.|.++| .. -|.|-+.+.+...+..|.|.. |...| .|.+.++
T Consensus 409 ~~~A~~~i~psa~Re~~ve---~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppk---GVLlyGPPGC~KT 482 (693)
T KOG0730|consen 409 FQEALMGIRPSALREILVE---MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPK---GVLLYGPPGCGKT 482 (693)
T ss_pred HHHHHhcCCchhhhheecc---CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCc---eEEEECCCCcchH
Confidence 9999998877776655432 2224455554 22 233444555667787877654 34344 4445443
Q ss_pred cccHHHHHHHHHHhhchhhhh--hhhcCCCCcccCccchHHHHHHHHHhhhccccccceEEee
Q 005304 534 LISKQQLFARIVGGLGGRAAE--EVIFGEPEVTTGAAGDLQQITGLAKQAHYFFFFLQMVTTF 594 (703)
Q Consensus 534 ~~t~~~l~~~i~~~lgGraAE--~~~fg~~~~t~Ga~~Dl~~at~lA~~~~~~~~~~~mv~~~ 594 (703)
+.-|.---.-=+..+.=..+| ..|+|+.+ .-+.+..+.||++.+|+-|+.=+-.+
T Consensus 483 ~lAkalAne~~~nFlsvkgpEL~sk~vGeSE------r~ir~iF~kAR~~aP~IiFfDEiDsi 539 (693)
T KOG0730|consen 483 LLAKALANEAGMNFLSVKGPELFSKYVGESE------RAIREVFRKARQVAPCIIFFDEIDAL 539 (693)
T ss_pred HHHHHHhhhhcCCeeeccCHHHHHHhcCchH------HHHHHHHHHHhhcCCeEEehhhHHhH
Confidence 322211000000111112222 22455432 34888889999988888877544333
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-33 Score=305.29 Aligned_cols=280 Identities=33% Similarity=0.547 Sum_probs=228.1
Q ss_pred ccCCCccccc--cccchHHHHHHHH--HHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcC-CCEEEeec
Q 005304 223 EPNTGVTFDD--VAGVDEAKQDFME--VVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-VPFFSISG 297 (703)
Q Consensus 223 ~~~~~~~f~d--v~G~de~k~~L~e--~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~-~pfi~is~ 297 (703)
...|+..|++ |.|.+.....+-+ +...+--|+.-.++|++.-||+|||||||||||++||.|..-++ .+--.+++
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 3457788887 4676655544432 34457778888999999999999999999999999999998875 35566899
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHhc--------CCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCC
Q 005304 298 SEFVEMFVGVGASRVRDLFKKAKEN--------APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG 369 (703)
Q Consensus 298 se~~~~~~G~~~~~ir~lF~~A~~~--------aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ 369 (703)
.++.++|+|++++++|.+|..|.+. .--||++||||++|++|++.. ++..-.++++||||..|||.+.-.+
T Consensus 291 PeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~-g~TGVhD~VVNQLLsKmDGVeqLNN 369 (744)
T KOG0741|consen 291 PEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMA-GSTGVHDTVVNQLLSKMDGVEQLNN 369 (744)
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCC-CCCCccHHHHHHHHHhcccHHhhhc
Confidence 9999999999999999999998531 124899999999999998743 3344567899999999999999999
Q ss_pred eEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCC----CCCccccHHHHHHhCCCCcHHHHHHHHH
Q 005304 370 IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK----KFDADVSLDVIAMRTPGFSGADLANLLN 445 (703)
Q Consensus 370 ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~----~l~~dvdl~~lA~~t~G~sgadL~~lv~ 445 (703)
++||+-||+.|.+|+||+|||||..++++.+||+.+|.+|++.|...+ .++.|+|+.+||..|..||||+|+.+++
T Consensus 370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk 449 (744)
T KOG0741|consen 370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK 449 (744)
T ss_pred EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence 999999999999999999999999999999999999999999997654 4778999999999999999999999999
Q ss_pred HHHHHHHHhC---------------CCCcCHHHHHHHHHHHHcCcCCcc--cc----c---CCcchhhhHHHHHHHHHHh
Q 005304 446 EAAILAGRRG---------------KAAISSKEIDDSIDRIVAGMEGTV--MT----D---GKSKSLVAYHEVGHAICGT 501 (703)
Q Consensus 446 eAa~~A~r~~---------------~~~It~~di~~Al~~v~~g~~~~~--~~----~---~~~~~~va~hEaGhAlv~~ 501 (703)
.|...|..|. .-.|+++||..|++.+.+...... +. . ....+.....+-|.-+|..
T Consensus 450 sA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~q 529 (744)
T KOG0741|consen 450 SAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQ 529 (744)
T ss_pred HHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHH
Confidence 9999998662 236899999999998876543221 10 0 1123445566677777766
Q ss_pred hc
Q 005304 502 LT 503 (703)
Q Consensus 502 ~~ 503 (703)
+-
T Consensus 530 vk 531 (744)
T KOG0741|consen 530 VK 531 (744)
T ss_pred hh
Confidence 54
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=7.5e-32 Score=319.36 Aligned_cols=250 Identities=48% Similarity=0.758 Sum_probs=226.6
Q ss_pred CCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH
Q 005304 225 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (703)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~ 303 (703)
.++++|+||+|.+++++.+++++.. +++|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4679999999999999999999886 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccccc
Q 005304 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (703)
Q Consensus 304 ~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 383 (703)
+.|.....++.+|+.+....|+||||||||.++++++... ......++++|+..|+++..+..++||++||+++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~---~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT---GEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc---chHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999988775422 2234568899999999998888999999999999999
Q ss_pred ccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC--------
Q 005304 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG-------- 455 (703)
Q Consensus 384 ~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~-------- 455 (703)
++++|+|||++.+.++.|+.++|.+||+.+.++..+..+.++..++..+.||+++|+..++++|+..+.++.
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999999888888999999999999999999999999999887652
Q ss_pred -----------CCCcCHHHHHHHHHHHHcCcCC
Q 005304 456 -----------KAAISSKEIDDSIDRIVAGMEG 477 (703)
Q Consensus 456 -----------~~~It~~di~~Al~~v~~g~~~ 477 (703)
...++.+|+..|+..+.+...+
T Consensus 409 ~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~ 441 (733)
T TIGR01243 409 EAEEIPAEVLKELKVTMKDFMEALKMVEPSAIR 441 (733)
T ss_pred ccccccchhcccccccHHHHHHHHhhccccccc
Confidence 1247889999999887665433
No 36
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=9.2e-32 Score=286.50 Aligned_cols=262 Identities=17% Similarity=0.209 Sum_probs=194.6
Q ss_pred CCcccccc-ccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHH
Q 005304 226 TGVTFDDV-AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (703)
Q Consensus 226 ~~~~f~dv-~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~ 304 (703)
..-+|+++ .|+--.+.-+.+++-.+.... ...+|+++|++++||||||||||++|+++|++++++|+.++++++.++|
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~-l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNF-LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhh-hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 34578888 555555555555443332211 2236889999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHh-----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCc------------cCC
Q 005304 305 VGVGASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF------------EGN 367 (703)
Q Consensus 305 ~G~~~~~ir~lF~~A~~-----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~------------~~~ 367 (703)
+|++++.+|++|+.|+. .+||||||||||+++++|+.. ...-..+.+..+|+++||+. ...
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~--~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~ 266 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT--QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEI 266 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC--CcchHHHHHHHHHHHHhcCCccccccccccccccC
Confidence 99999999999999975 469999999999999988632 11222233347888888753 345
Q ss_pred CCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCC----CcHHHHHHH
Q 005304 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPG----FSGADLANL 443 (703)
Q Consensus 368 ~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G----~sgadL~~l 443 (703)
.+|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+|++.++++..++ ..++..|+..++| |.||--..+
T Consensus 267 ~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~ 343 (413)
T PLN00020 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARV 343 (413)
T ss_pred CCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHH
Confidence 67999999999999999999999999965 5899999999999999998776 5778899998887 667766666
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCcCCcccccCCcchhhhHHHHHHHHHH
Q 005304 444 LNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICG 500 (703)
Q Consensus 444 v~eAa~~A~r~~~~~It~~di~~Al~~v~~g~~~~~~~~~~~~~~va~hEaGhAlv~ 500 (703)
..++...-+.+- . ++..-++++...++.+......-.+-.+-|.||.++.
T Consensus 344 yd~~v~~~i~~~----g---~~~~~~~l~~~~~~~p~f~~~~~t~~~l~~~g~~l~~ 393 (413)
T PLN00020 344 YDDEVRKWIAEV----G---VENLGKKLVNSKKGPPTFEPPKMTLEKLLEYGNMLVR 393 (413)
T ss_pred HHHHHHHHHHHh----h---HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 666655443321 1 2222233333323222222333445677889999875
No 37
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.2e-32 Score=314.60 Aligned_cols=252 Identities=35% Similarity=0.603 Sum_probs=223.2
Q ss_pred cCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEeec
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISG 297 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~ 297 (703)
....++|++|+|.+.+++.|+|.|.. +..|+.|..+++.+|+|||++||||||||+.|+++|..+ .+.|+.-.+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 34678999999999999999998876 889999999999999999999999999999999999987 567888889
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005304 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (703)
Q Consensus 298 se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (703)
++..++|+|+.++.++.+|++|+++.|+|||+||||-+++.|+.- .......++..||..|||...++.|+||+|||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk---qEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK---QEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch---HHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 999999999999999999999999999999999999999888642 23345568889999999999999999999999
Q ss_pred CcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC
Q 005304 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 456 (703)
Q Consensus 378 ~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~ 456 (703)
+|+.+||+|+||||||+.++|++|+.+.|.+|+..|.++.... ...-+..+|..|.||-|+||+.+|.+|++.+.++.-
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 9999999999999999999999999999999999998875522 223367899999999999999999999999988632
Q ss_pred ----------------CCcCHHHHHHHHHHHHcCcCCc
Q 005304 457 ----------------AAISSKEIDDSIDRIVAGMEGT 478 (703)
Q Consensus 457 ----------------~~It~~di~~Al~~v~~g~~~~ 478 (703)
..|...||..|+.++.+...+.
T Consensus 495 Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~ 532 (1080)
T KOG0732|consen 495 PQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRS 532 (1080)
T ss_pred CeeecccccccccchhhhhhhHhhhhhhhccCCCCCcc
Confidence 2356778888888877766654
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.6e-30 Score=278.82 Aligned_cols=244 Identities=35% Similarity=0.557 Sum_probs=208.6
Q ss_pred cCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
..+++.|+|++|.+.+|+.+.+.+.+ +..|..|..+ ..+++|+||.||||+|||+|++|+|.|++..|+.++.+.+..
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 44678999999999999999999988 4557777644 235689999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccC--CCCeEEEEecCCcc
Q 005304 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--NTGIIVIAATNRAD 380 (703)
Q Consensus 303 ~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~--~~~ViVIaaTN~p~ 380 (703)
+|+|++++.++.+|.-|+..+|+|+||||||.+..+|.. ..++.......++|.++++... +.+|+||+|||+|+
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~---~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~ 301 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD---NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPW 301 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC---cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCch
Confidence 999999999999999999999999999999999998843 3566667788888888887754 45799999999999
Q ss_pred cccccccCCCccceeeeecCCChhhHHHHHHHHhcCCC-CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCC--
Q 005304 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK-FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA-- 457 (703)
Q Consensus 381 ~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~-l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~-- 457 (703)
.+|.+++| ||.+.++|++||.+.|..+|+..+.+.+ ...+.++..+++.|+|||+.||.++|.+|++--.+....
T Consensus 302 e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~ 379 (428)
T KOG0740|consen 302 ELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTT 379 (428)
T ss_pred HHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccch
Confidence 99999999 9999999999999999999999987763 334577999999999999999999999998766554322
Q ss_pred -----------CcCHHHHHHHHHHHHc
Q 005304 458 -----------AISSKEIDDSIDRIVA 473 (703)
Q Consensus 458 -----------~It~~di~~Al~~v~~ 473 (703)
.|+..|+..+...+.+
T Consensus 380 ~~~~~~~~~~r~i~~~df~~a~~~i~~ 406 (428)
T KOG0740|consen 380 DLEFIDADKIRPITYPDFKNAFKNIKP 406 (428)
T ss_pred hhhhcchhccCCCCcchHHHHHHhhcc
Confidence 3444555666555433
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=99.87 E-value=4.3e-21 Score=203.59 Aligned_cols=213 Identities=21% Similarity=0.320 Sum_probs=162.8
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhccCCCCc---eEEEEcCCCChHHHHHHHHHHhc-------CCCEEEeechh
Q 005304 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK---GVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSE 299 (703)
Q Consensus 230 f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~---gvLL~GPpGTGKT~LArAlA~e~-------~~pfi~is~se 299 (703)
+++++|++++|+++.+++.++..++.+...|...|. +++|+||||||||++|+++|..+ ..+++++++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 458999999999999999987777777778876653 58999999999999999998875 23799999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005304 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (703)
Q Consensus 300 ~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (703)
+...+.|.++..++.+|+.+. ++||||||+|.+...++ .++.....++.|+..|+.. ..+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~-----~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN-----ERDYGSEAIEILLQVMENQ--RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC-----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcH
Confidence 999999988888888888763 46999999999965332 2234456777888888753 3568888887643
Q ss_pred c-----cccccccCCCccceeeeecCCChhhHHHHHHHHhcCCC--CCcccc---HHHHHHh--CCCCc-HHHHHHHHHH
Q 005304 380 D-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK--FDADVS---LDVIAMR--TPGFS-GADLANLLNE 446 (703)
Q Consensus 380 ~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~--l~~dvd---l~~lA~~--t~G~s-gadL~~lv~e 446 (703)
. .++|+|.+ ||+.+|+|+.|+.+++.+|++.++.+.. +.++.. ...+.+. .+.|. +++++++++.
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~ 249 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDR 249 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 2 34689999 9999999999999999999999987644 333221 1222222 23333 8999999998
Q ss_pred HHHHHHHh
Q 005304 447 AAILAGRR 454 (703)
Q Consensus 447 Aa~~A~r~ 454 (703)
|...-..|
T Consensus 250 ~~~~~~~r 257 (287)
T CHL00181 250 ARMRQANR 257 (287)
T ss_pred HHHHHHHH
Confidence 87666544
No 40
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=1e-20 Score=198.07 Aligned_cols=213 Identities=19% Similarity=0.296 Sum_probs=160.3
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhccCCCC---ceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEeech
Q 005304 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIP---KGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGS 298 (703)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p---~gvLL~GPpGTGKT~LArAlA~e~-------~~pfi~is~s 298 (703)
.+++++|++++|+.+++++.+..........|...+ .+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 368899999999999999998766555556666543 478999999999999999999864 3478999999
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 299 e~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
++...++|.....++++|+.+. ++||||||+|.+.+. +..+.....++.|+..|+.. ..++++|++++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~------~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG------GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC------CccchHHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 9999999999999999998874 479999999999531 12233456778888888864 345666666543
Q ss_pred cc-----cccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCcccc-HHHHHH---------hCCCCcHHHHHHH
Q 005304 379 AD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS-LDVIAM---------RTPGFSGADLANL 443 (703)
Q Consensus 379 p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~lA~---------~t~G~sgadL~~l 443 (703)
.+ .++|++.+ ||+..++++.++.+++.+|++.++......-+.+ +..++. .....+++.+.|+
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 22 37889998 9998999999999999999999987654322111 333321 1123468889999
Q ss_pred HHHHHHHHHHh
Q 005304 444 LNEAAILAGRR 454 (703)
Q Consensus 444 v~eAa~~A~r~ 454 (703)
++.|......+
T Consensus 231 ~e~a~~~~~~r 241 (261)
T TIGR02881 231 IEKAIRRQAVR 241 (261)
T ss_pred HHHHHHHHHHH
Confidence 98887665443
No 41
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=2.4e-21 Score=179.42 Aligned_cols=130 Identities=45% Similarity=0.772 Sum_probs=116.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcC-CeEEEEcCcccccccCCCCCCC
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENA-PCIVFVDEIDAVGRQRGTGIGG 345 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~a-P~ILfIDEID~L~~~r~~~~~~ 345 (703)
|||+||||||||++|+++|+.++.+++.++++++.+.+.+...+.++++|++++... ||||||||+|.+..+. ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 699999999999999999999999999999999998888999999999999999888 9999999999998776 123
Q ss_pred CChHHHHHHHHHHhhhcCccCC-CCeEEEEecCCcccccccccCCCccceeeeecC
Q 005304 346 GNDEREQTLNQLLTEMDGFEGN-TGIIVIAATNRADILDSALLRPGRFDRQVTVDV 400 (703)
Q Consensus 346 ~~~e~~~~l~~LL~~ld~~~~~-~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~ 400 (703)
........+++|+..++..... .+++||++||.++.++++++| +||++.|++++
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 4666778899999999987765 569999999999999999998 89999999874
No 42
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.2e-21 Score=209.18 Aligned_cols=206 Identities=24% Similarity=0.346 Sum_probs=162.8
Q ss_pred ccccccccchHHHHHHHH-HHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhh
Q 005304 228 VTFDDVAGVDEAKQDFME-VVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 306 (703)
Q Consensus 228 ~~f~dv~G~de~k~~L~e-~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G 306 (703)
-+|+.++--.+.|+++.+ +.+|++..+-|++.|..-.||.|||||||||||+++.|+|+.++..++-++.++...
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~---- 273 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL---- 273 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----
Confidence 689999999999999887 556788999999999999999999999999999999999999999999988876432
Q ss_pred hhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCC---CC-hHHHHHHHHHHhhhcCccCCC--CeEEEEecCCcc
Q 005304 307 VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGG---GN-DEREQTLNQLLTEMDGFEGNT--GIIVIAATNRAD 380 (703)
Q Consensus 307 ~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~---~~-~e~~~~l~~LL~~ld~~~~~~--~ViVIaaTN~p~ 380 (703)
.. .++.++..+... +||+|++||+-..-++..... .. ....-++..||+.+||..+.. .-|||.|||.++
T Consensus 274 -n~-dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 274 -DS-DLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred -cH-HHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 22 377777766444 699999999975533321111 11 124468999999999998766 578999999999
Q ss_pred cccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCC--CcHHHHHHH
Q 005304 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPG--FSGADLANL 443 (703)
Q Consensus 381 ~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G--~sgadL~~l 443 (703)
.|||||+||||+|.+|++...+..+-+.+++.++.-.. +..-+.+|.+...+ .||||+...
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHH
Confidence 99999999999999999999999999999999987643 11113333333332 699998654
No 43
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=1.1e-20 Score=200.49 Aligned_cols=212 Identities=18% Similarity=0.251 Sum_probs=164.5
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCCC---CceEEEEcCCCChHHHHHHHHHHhcC-------CCEEEeechhH
Q 005304 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARI---PKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSISGSEF 300 (703)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~---p~gvLL~GPpGTGKT~LArAlA~e~~-------~pfi~is~se~ 300 (703)
++++|++++|+++.+++.++..++.+.+.|... ..+++|+||||||||++|+++|..+. .+|++++++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 379999999999999999988888888888775 34899999999999999999988662 37999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCc-
Q 005304 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA- 379 (703)
Q Consensus 301 ~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p- 379 (703)
...+.|.+...++++|+++. +++|||||+|.+.+.+. ..+.....++.|+..|+.. ..+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~-----~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN-----ERDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC-----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 99999988888889998873 47999999999854322 1234456777888888743 4578888887643
Q ss_pred -c---cccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCcccc-HHHHHHh-------CCCCcHHHHHHHHHHH
Q 005304 380 -D---ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS-LDVIAMR-------TPGFSGADLANLLNEA 447 (703)
Q Consensus 380 -~---~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~lA~~-------t~G~sgadL~~lv~eA 447 (703)
+ .++|+|.+ ||+..|+|+.++.+++..|++.++.+....-+.+ ...+... ..-.++++++|+++.|
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 3 24899999 9999999999999999999999987754322211 2333332 2224689999999988
Q ss_pred HHHHHHh
Q 005304 448 AILAGRR 454 (703)
Q Consensus 448 a~~A~r~ 454 (703)
......|
T Consensus 250 ~~~~~~r 256 (284)
T TIGR02880 250 RLRQANR 256 (284)
T ss_pred HHHHHHH
Confidence 7766553
No 44
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.3e-20 Score=198.31 Aligned_cols=233 Identities=23% Similarity=0.357 Sum_probs=173.4
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHh
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~ 305 (703)
..-.|++|+-....+.+++.+...-.+.+.. ..+=++||+|||||||||++||-+|...|..+-.+.+.+..- .-
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h----~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKKH----QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LG 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhcccccc----cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cc
Confidence 3445999999999999999887665544331 233468999999999999999999999999999888877542 22
Q ss_pred hhhhhHHHHHHHHHHhcC-CeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccc
Q 005304 306 GVGASRVRDLFKKAKENA-PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (703)
Q Consensus 306 G~~~~~ir~lF~~A~~~a-P~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 384 (703)
..+...+..+|+.+++.. .-+|||||.|++.-.|.. ..-++.....+|.||-.-. +...+++++.+||+|..+|.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk--tymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK--TYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDS 500 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch--hhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhH
Confidence 334567899999998754 458899999999877754 2234556778999986543 23456899999999999999
Q ss_pred cccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC------------------------c---cccHHHHHHhCCCCcH
Q 005304 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD------------------------A---DVSLDVIAMRTPGFSG 437 (703)
Q Consensus 385 aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~------------------------~---dvdl~~lA~~t~G~sg 437 (703)
++-. |+|..|+|++|..++|..+|..++.+.... . +.-+.+.|++|.||||
T Consensus 501 AV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSG 578 (630)
T KOG0742|consen 501 AVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSG 578 (630)
T ss_pred HHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcH
Confidence 9998 999999999999999999998877543211 0 1115778999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 005304 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (703)
Q Consensus 438 adL~~lv~eAa~~A~r~~~~~It~~di~~Al~ 469 (703)
++|..|+---...+.-+....++..-|++.++
T Consensus 579 REiakLva~vQAavYgsedcvLd~~lf~e~v~ 610 (630)
T KOG0742|consen 579 REIAKLVASVQAAVYGSEDCVLDEALFDERVD 610 (630)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 99999985433333333333455555555444
No 45
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.1e-18 Score=195.80 Aligned_cols=263 Identities=21% Similarity=0.233 Sum_probs=198.8
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEeechhHHHHHhh
Q 005304 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVEMFVG 306 (703)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~se~~~~~~G 306 (703)
.|++-...+|++.-+ ....| ...+.++||+||+|+|||.|+++++.+. .+.+.+++|+.+...-..
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 555666666665443 21222 2234579999999999999999999987 456778999998877677
Q ss_pred hhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhh-cCc-cCCCCeEEEEecCCcccccc
Q 005304 307 VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM-DGF-EGNTGIIVIAATNRADILDS 384 (703)
Q Consensus 307 ~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~l-d~~-~~~~~ViVIaaTN~p~~LD~ 384 (703)
...+.++.+|..+.+++|+||++|++|.+....+. .++......+.++.++.++ +.+ ..+..+.|||+.+....++|
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~-e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSN-ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcc-cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 77888999999999999999999999999862222 2233344445555566443 223 33455799999999999999
Q ss_pred cccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh----CCCCc
Q 005304 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR----GKAAI 459 (703)
Q Consensus 385 aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~----~~~~I 459 (703)
.|.+|++|+.++.++.|+..+|.+||+..+.+.... ..-|++.++..|+||...|+.-++.+|...|... +...+
T Consensus 557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~kll 636 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLL 636 (952)
T ss_pred hhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccc
Confidence 999999999999999999999999999998876522 2234566999999999999999999999988732 33478
Q ss_pred CHHHHHHHHHHHHcCcCCccccc----CCcchhhhHHHHHHHHHHhhcC
Q 005304 460 SSKEIDDSIDRIVAGMEGTVMTD----GKSKSLVAYHEVGHAICGTLTP 504 (703)
Q Consensus 460 t~~di~~Al~~v~~g~~~~~~~~----~~~~~~va~hEaGhAlv~~~~~ 504 (703)
|.++|.++++...+-.-+..... .....+-.++|+..++...+..
T Consensus 637 tke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~ 685 (952)
T KOG0735|consen 637 TKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEW 685 (952)
T ss_pred hHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHhc
Confidence 99999999999887666554321 2334556789988888766554
No 46
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.81 E-value=4.5e-19 Score=179.03 Aligned_cols=192 Identities=28% Similarity=0.382 Sum_probs=130.1
Q ss_pred cCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~ 303 (703)
.-++.+|+|++|+++.+..+.-+++..+... ....++|||||||+|||+||+.+|++++++|..+++..+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k- 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK- 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S-
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh-
Confidence 3456799999999999999888887654321 12337999999999999999999999999999998864321
Q ss_pred HhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc--------CC--------
Q 005304 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GN-------- 367 (703)
Q Consensus 304 ~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~--------~~-------- 367 (703)
...+..++...+ ...||||||||.+ +...++ .|+..|+.+. .+
T Consensus 89 -----~~dl~~il~~l~--~~~ILFIDEIHRl-----------nk~~qe---~LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 89 -----AGDLAAILTNLK--EGDILFIDEIHRL-----------NKAQQE---ILLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp -----CHHHHHHHHT----TT-EEEECTCCC-------------HHHHH---HHHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred -----HHHHHHHHHhcC--CCcEEEEechhhc-----------cHHHHH---HHHHHhccCeEEEEeccccccceeeccC
Confidence 233444444443 3469999999999 233333 4455555432 11
Q ss_pred CCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCcccc-HHHHHHhCCCCcHHHHHHHHHH
Q 005304 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS-LDVIAMRTPGFSGADLANLLNE 446 (703)
Q Consensus 368 ~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~lA~~t~G~sgadL~~lv~e 446 (703)
..+.+|+||++...|.+.|+. ||.-...+..++.++..+|++.......+.-+.+ ...||+++.| +|+-..+++++
T Consensus 148 ~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~r 224 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRR 224 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHH
T ss_pred CCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 258999999999999999999 9998889999999999999998877766654333 6789999987 68877777766
Q ss_pred H
Q 005304 447 A 447 (703)
Q Consensus 447 A 447 (703)
+
T Consensus 225 v 225 (233)
T PF05496_consen 225 V 225 (233)
T ss_dssp H
T ss_pred H
Confidence 5
No 47
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.80 E-value=1.4e-18 Score=187.91 Aligned_cols=220 Identities=25% Similarity=0.326 Sum_probs=163.8
Q ss_pred ccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
.+.++.+|+|++|+++.++.+..++...+.+. .++.++|||||||||||++|+++|++++..+..+++..+..
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~-------~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~ 89 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKKRG-------EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK 89 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcC-------CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC
Confidence 34566799999999999999998887654321 34668999999999999999999999999988877654321
Q ss_pred HHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhh------cC-cc------CCCC
Q 005304 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM------DG-FE------GNTG 369 (703)
Q Consensus 303 ~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~l------d~-~~------~~~~ 369 (703)
...+..++... ..++||||||||.+.. ..++.+..++... +. .. .-.+
T Consensus 90 ------~~~l~~~l~~l--~~~~vl~IDEi~~l~~-----------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 90 ------PGDLAAILTNL--EEGDVLFIDEIHRLSP-----------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred ------hHHHHHHHHhc--ccCCEEEEecHhhcch-----------HHHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 12344444443 3468999999999831 1222332222211 00 00 1134
Q ss_pred eEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCc-cccHHHHHHhCCCCcHHHHHHHHHHHH
Q 005304 370 IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGADLANLLNEAA 448 (703)
Q Consensus 370 ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~lA~~t~G~sgadL~~lv~eAa 448 (703)
+.+|++||++..++++|++ ||...+.++.|+.+++.+|++..+......- +..+..++..+.| +++.+.++++.+.
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~ 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVR 227 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHH
Confidence 7899999999999999988 9988999999999999999998877654432 2237788888887 5788999999988
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHH
Q 005304 449 ILAGRRGKAAISSKEIDDSIDRI 471 (703)
Q Consensus 449 ~~A~r~~~~~It~~di~~Al~~v 471 (703)
..|..++...|+.+++..+++.+
T Consensus 228 ~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 228 DFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHh
Confidence 88877777789999999998753
No 48
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.4e-18 Score=195.86 Aligned_cols=220 Identities=44% Similarity=0.727 Sum_probs=198.5
Q ss_pred hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEE
Q 005304 250 LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFV 329 (703)
Q Consensus 250 l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfI 329 (703)
+..+..++.++..+|++++++||||||||++++++|.+ +..+..+++.+....+.|......+.+|..++..+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 35677788999999999999999999999999999999 76668899999999999999999999999999999999999
Q ss_pred cCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHH
Q 005304 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEI 409 (703)
Q Consensus 330 DEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~I 409 (703)
||+|.+.+.+.. .........+.+++..+++..... +++++.||++..+|+++++||||++.+.+..|+...+.+|
T Consensus 83 d~~~~~~~~~~~---~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei 158 (494)
T COG0464 83 DEIDALAPKRSS---DQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEI 158 (494)
T ss_pred chhhhcccCccc---cccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHH
Confidence 999999988876 233445678889999999988444 9999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC------CCCcCHHHHHHHHHHHHcC
Q 005304 410 LKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG------KAAISSKEIDDSIDRIVAG 474 (703)
Q Consensus 410 L~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~------~~~It~~di~~Al~~v~~g 474 (703)
+..+........+.+...++..+.|++++++..++.++...+.++. ...++.+++.++++++...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 159 LQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred HHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc
Confidence 9999999888888899999999999999999999999999998885 3467899999999987664
No 49
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.7e-18 Score=192.31 Aligned_cols=311 Identities=23% Similarity=0.419 Sum_probs=219.6
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccC
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r 339 (703)
+...--.+||+|+||||||++++++|.++|.+++.++|.++.....+..+..+...|..|+...|||||+-++|.++..+
T Consensus 427 ~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~ 506 (953)
T KOG0736|consen 427 LLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQ 506 (953)
T ss_pred ccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecC
Confidence 33444579999999999999999999999999999999999998888888899999999999999999999999998544
Q ss_pred CCCCCCCChHHHHHHHHHHhhhcCcc-CCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCC
Q 005304 340 GTGIGGGNDEREQTLNQLLTEMDGFE-GNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK 418 (703)
Q Consensus 340 ~~~~~~~~~e~~~~l~~LL~~ld~~~-~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~ 418 (703)
.. +..-...+.++.++. .|.+. +..+++||++|+..+.+++.+++ .|-..|.++.|+.++|.+||+.++....
T Consensus 507 dg---ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~ 580 (953)
T KOG0736|consen 507 DG---GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLP 580 (953)
T ss_pred CC---chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccc
Confidence 32 223334455555555 44444 45689999999999999999998 6777899999999999999999999999
Q ss_pred CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH---h-C----------------CCCcCHHHHHHHHHHHHcCcCCc
Q 005304 419 FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGR---R-G----------------KAAISSKEIDDSIDRIVAGMEGT 478 (703)
Q Consensus 419 l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r---~-~----------------~~~It~~di~~Al~~v~~g~~~~ 478 (703)
+..++.+..++.+|.||+.+|+..++..+-..+.. + + ...++++||.+|+++........
T Consensus 581 ~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~a 660 (953)
T KOG0736|consen 581 LNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDA 660 (953)
T ss_pred cchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999998766332221 1 1 15689999999999865433221
Q ss_pred ccccCCcchhhhHHHHH------HHHHHhhcCCCCCcceeeeecCc-c-cceEEEEccCC-CCCcccHHHHHHHHHHhhc
Q 005304 479 VMTDGKSKSLVAYHEVG------HAICGTLTPGHDPVQKVTLVPRG-Q-ARGLTWFIPSD-DPTLISKQQLFARIVGGLG 549 (703)
Q Consensus 479 ~~~~~~~~~~va~hEaG------hAlv~~~~~~~~~v~kvti~prg-~-a~G~~~~~p~~-~~~~~t~~~l~~~i~~~lg 549 (703)
. ....-..+.||++| ..|...+.. |+....+...| + .-|...|-|+. .++++.
T Consensus 661 i--GAPKIPnV~WdDVGGLeevK~eIldTIql---PL~hpeLfssglrkRSGILLYGPPGTGKTLlA------------- 722 (953)
T KOG0736|consen 661 I--GAPKIPNVSWDDVGGLEEVKTEILDTIQL---PLKHPELFSSGLRKRSGILLYGPPGTGKTLLA------------- 722 (953)
T ss_pred c--CCCCCCccchhcccCHHHHHHHHHHHhcC---cccChhhhhccccccceeEEECCCCCchHHHH-------------
Confidence 1 11111235566655 444444332 23333333222 1 23555565543 333222
Q ss_pred hhhhhhhhc------CCC--CcccCc-cchHHHHHHHHHhhhccccccceEEee
Q 005304 550 GRAAEEVIF------GEP--EVTTGA-AGDLQQITGLAKQAHYFFFFLQMVTTF 594 (703)
Q Consensus 550 GraAE~~~f------g~~--~~t~Ga-~~Dl~~at~lA~~~~~~~~~~~mv~~~ 594 (703)
=-+|-|.=+ |.+ ++-.|- ...+.+..+-||+|.+|+-|+.=+...
T Consensus 723 KAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 723 KAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEecccccc
Confidence 223333211 000 122332 245889999999999999887544443
No 50
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.79 E-value=3.1e-18 Score=182.74 Aligned_cols=210 Identities=24% Similarity=0.339 Sum_probs=155.5
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhh
Q 005304 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVG 308 (703)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~ 308 (703)
+|+|++|+++.++.|..++...+... ..+.+++|+||||||||++|+++|++++.++..++++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~-------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ-------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC-------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 79999999999999988886543221 23557999999999999999999999999887776543221
Q ss_pred hhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc----------------CCCCeEE
Q 005304 309 ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE----------------GNTGIIV 372 (703)
Q Consensus 309 ~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~----------------~~~~ViV 372 (703)
...+...+... ..+.+|||||+|.+.. ..... |+..|+... ...++++
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~-----------~~~e~---l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSP-----------AVEEL---LYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCH-----------HHHHH---hhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 11223333332 3467999999999832 12222 333332211 1134889
Q ss_pred EEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005304 373 IAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (703)
Q Consensus 373 IaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A 451 (703)
|++||++..+++++++ ||...+.+++|+.+++.++++..+...... ++..+..+++.+.| +++.+.++++.+...|
T Consensus 133 i~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a 209 (305)
T TIGR00635 133 VGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFA 209 (305)
T ss_pred EEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHH
Confidence 9999999999999998 998889999999999999999887654333 22236788888887 4688889999888888
Q ss_pred HHhCCCCcCHHHHHHHHHH
Q 005304 452 GRRGKAAISSKEIDDSIDR 470 (703)
Q Consensus 452 ~r~~~~~It~~di~~Al~~ 470 (703)
...+...|+.+++..+++.
T Consensus 210 ~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 210 QVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHcCCCCcCHHHHHHHHHH
Confidence 7777778999999999887
No 51
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.3e-18 Score=179.11 Aligned_cols=237 Identities=22% Similarity=0.258 Sum_probs=173.2
Q ss_pred ccccccchHHHHHHHHHHHH-hcCchhhhh-ccCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEeech
Q 005304 230 FDDVAGVDEAKQDFMEVVEF-LKKPERFTA-IGARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGS 298 (703)
Q Consensus 230 f~dv~G~de~k~~L~e~v~~-l~~p~~~~~-lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~s 298 (703)
|+.++=-...|++|...+.. +.-.++-.. -=+...|-+||+||||||||+|+||+|..+ ...++++++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 56666667788888876654 222221111 012234569999999999999999999977 3468899999
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHhc---CCe--EEEEcCcccccccCCC-CCCCCChHHHHHHHHHHhhhcCccCCCCeEE
Q 005304 299 EFVEMFVGVGASRVRDLFKKAKEN---APC--IVFVDEIDAVGRQRGT-GIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (703)
Q Consensus 299 e~~~~~~G~~~~~ir~lF~~A~~~---aP~--ILfIDEID~L~~~r~~-~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViV 372 (703)
.+.++|.+++-+.+..+|++..+. ..+ .++|||+++++..|.+ ..+......-+++|.+|++||.+....+|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 999999999999999999987542 222 4569999999988843 3334455677899999999999999999999
Q ss_pred EEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCC-------------CCccc-----cHHHHHHh-CC
Q 005304 373 IAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK-------------FDADV-----SLDVIAMR-TP 433 (703)
Q Consensus 373 IaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~-------------l~~dv-----dl~~lA~~-t~ 433 (703)
++|+|-.+.+|.|+.. |-|-+.++.+|+...|.+|++..+...- ....+ ....++.. +.
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~ 378 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTV 378 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhc
Confidence 9999999999999999 9999999999999999999987653211 10111 12222222 58
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 005304 434 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (703)
Q Consensus 434 G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~ 470 (703)
|.||+-|+.+=--|...- -....|+.++|..|+-.
T Consensus 379 gLSGRtlrkLP~Laha~y--~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 379 GLSGRTLRKLPLLAHAEY--FRTFTVDLSNFLLALLE 413 (423)
T ss_pred CCccchHhhhhHHHHHhc--cCCCccChHHHHHHHHH
Confidence 999998887644433222 22357888888777643
No 52
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.76 E-value=2.1e-17 Score=177.07 Aligned_cols=205 Identities=28% Similarity=0.391 Sum_probs=145.3
Q ss_pred CCCccccccccchHHHHH---HHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 225 NTGVTFDDVAGVDEAKQD---FMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 225 ~~~~~f~dv~G~de~k~~---L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
-++.+++|++|+++..-+ |++.++.- ...+++||||||||||++|+.||+..+.+|..+|..
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~~~------------~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--- 82 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVEAG------------HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--- 82 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHhcC------------CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc---
Confidence 356799999999987743 33444321 123799999999999999999999999999999983
Q ss_pred HHHhhhhhhHHHHHHHHHHhcC----CeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec-
Q 005304 302 EMFVGVGASRVRDLFKKAKENA----PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT- 376 (703)
Q Consensus 302 ~~~~G~~~~~ir~lF~~A~~~a----P~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaT- 376 (703)
-.+.+.+|++|+.|++.. ..||||||||.+-+ .....||-.++ +..|++|+||
T Consensus 83 ----~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK--------------~QQD~lLp~vE----~G~iilIGATT 140 (436)
T COG2256 83 ----TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK--------------AQQDALLPHVE----NGTIILIGATT 140 (436)
T ss_pred ----cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh--------------hhhhhhhhhhc----CCeEEEEeccC
Confidence 445678999999996533 48999999999922 12345666665 6778999887
Q ss_pred -CCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcC--CCCC------ccccHHHHHHhCCCCcHHHHHHHHHHH
Q 005304 377 -NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN--KKFD------ADVSLDVIAMRTPGFSGADLANLLNEA 447 (703)
Q Consensus 377 -N~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~--~~l~------~dvdl~~lA~~t~G~sgadL~~lv~eA 447 (703)
|..-.+.++|++ |. +++++.+.+.++..++++..+.. .++. ++...+.++..+.|= .+-.-|+++.+
T Consensus 141 ENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD-~R~aLN~LE~~ 216 (436)
T COG2256 141 ENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGD-ARRALNLLELA 216 (436)
T ss_pred CCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCch-HHHHHHHHHHH
Confidence 556689999999 66 57899999999999999884322 2232 222356677777662 33344555555
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHH
Q 005304 448 AILAGRRGKAAISSKEIDDSIDRIV 472 (703)
Q Consensus 448 a~~A~r~~~~~It~~di~~Al~~v~ 472 (703)
...+ +.+. .++.+++++.+.+..
T Consensus 217 ~~~~-~~~~-~~~~~~l~~~l~~~~ 239 (436)
T COG2256 217 ALSA-EPDE-VLILELLEEILQRRS 239 (436)
T ss_pred HHhc-CCCc-ccCHHHHHHHHhhhh
Confidence 5444 2233 444788888776643
No 53
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=1.6e-17 Score=170.92 Aligned_cols=217 Identities=26% Similarity=0.351 Sum_probs=170.3
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHH
Q 005304 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (703)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~ 304 (703)
-++.+|+|.+|++++|+.|.-++...+..+ ...-++|||||||.|||+||..+|+|+|+.+-..++..+..
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 356789999999999999998887755433 23458999999999999999999999999999998865432
Q ss_pred hhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc--------C--------CC
Q 005304 305 VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------G--------NT 368 (703)
Q Consensus 305 ~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~--------~--------~~ 368 (703)
+..+-.++..... .+||||||||++.+ ..+++ |...|+.|. . -.
T Consensus 91 ----~gDlaaiLt~Le~--~DVLFIDEIHrl~~-----------~vEE~---LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 91 ----PGDLAAILTNLEE--GDVLFIDEIHRLSP-----------AVEEV---LYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred ----hhhHHHHHhcCCc--CCeEEEehhhhcCh-----------hHHHH---hhhhhhheeEEEEEccCCccceEeccCC
Confidence 2233344444433 37999999999942 22333 334455442 1 12
Q ss_pred CeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccc-cHHHHHHhCCCCcHHHHHHHHHHH
Q 005304 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV-SLDVIAMRTPGFSGADLANLLNEA 447 (703)
Q Consensus 369 ~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dv-dl~~lA~~t~G~sgadL~~lv~eA 447 (703)
.+.+|+||.+...|...|+. ||.....+..++.++..+|+........+.-+. ....+|+++.| +|+=...++++.
T Consensus 151 pFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRV 227 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRV 227 (332)
T ss_pred CeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHH
Confidence 58999999999999999998 999999999999999999999988766555332 36789999987 688888999999
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHc
Q 005304 448 AILAGRRGKAAISSKEIDDSIDRIVA 473 (703)
Q Consensus 448 a~~A~r~~~~~It~~di~~Al~~v~~ 473 (703)
.-.|.-++...|+.+-..+|++....
T Consensus 228 RDfa~V~~~~~I~~~ia~~aL~~L~V 253 (332)
T COG2255 228 RDFAQVKGDGDIDRDIADKALKMLDV 253 (332)
T ss_pred HHHHHHhcCCcccHHHHHHHHHHhCc
Confidence 99999999999999999999886543
No 54
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.76 E-value=1.1e-17 Score=191.60 Aligned_cols=255 Identities=21% Similarity=0.281 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCC--CCCCccc-ccc----cccccccccCCCccccccccchHHHHHHHHHHHHhcCch
Q 005304 182 FPLILIGGLFLLSRRSSGGMGGPG--GPGFPLA-FGQ----SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPE 254 (703)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~----s~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~ 254 (703)
+..++||.+||...+.+.+..-.- .....+. ..+ +-..-+.++.++.+|++++|+++..+.++..+ .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al---~--- 82 (531)
T TIGR02902 9 IFLIIIGLYFFNALKNQQTNKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAAL---C--- 82 (531)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHH---h---
Confidence 445678888887777665411000 0000000 000 01122345678889999999999998887543 1
Q ss_pred hhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEeechhH-------HHHHhhhhhh-------
Q 005304 255 RFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSISGSEF-------VEMFVGVGAS------- 310 (703)
Q Consensus 255 ~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~pfi~is~se~-------~~~~~G~~~~------- 310 (703)
...+.++||+||||||||++|+++...+ +.||+.++|... .+...+....
T Consensus 83 ------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~ 156 (531)
T TIGR02902 83 ------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAG 156 (531)
T ss_pred ------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhcccc
Confidence 1224589999999999999999997642 468999998631 1111111000
Q ss_pred ---------HHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCc-----------------
Q 005304 311 ---------RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF----------------- 364 (703)
Q Consensus 311 ---------~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~----------------- 364 (703)
.-...+..+ ...+|||||||.+ +... .+.|+..|+..
T Consensus 157 ~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L-----------~~~~---q~~LL~~Le~~~~~~~~~~~~~~~~~~~ 219 (531)
T TIGR02902 157 PLGIAGIPQPKPGAVTRA---HGGVLFIDEIGEL-----------HPVQ---MNKLLKVLEDRKVFLDSAYYNSENPNIP 219 (531)
T ss_pred ccccCCcccccCchhhcc---CCcEEEEechhhC-----------CHHH---HHHHHHHHHhCeeeeccccccccCcccc
Confidence 001122222 3469999999999 2233 33444333210
Q ss_pred ---------cCCCCeEEE-EecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCc-cccHHHHHHhCC
Q 005304 365 ---------EGNTGIIVI-AATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTP 433 (703)
Q Consensus 365 ---------~~~~~ViVI-aaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~lA~~t~ 433 (703)
....++.+| +|||.|+.+++++++ |+. .+.++.++.+++.+|++..+++..+.- +..++.++..+.
T Consensus 220 ~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~ 296 (531)
T TIGR02902 220 SHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS 296 (531)
T ss_pred cchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh
Confidence 001234555 555779999999999 875 678999999999999999987765432 223566666554
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 005304 434 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (703)
Q Consensus 434 G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~ 470 (703)
+++++.++++.|+..|..+++..|+.+|+++++..
T Consensus 297 --n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 297 --NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred --hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 79999999999999998888889999999999763
No 55
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.76 E-value=7.7e-18 Score=199.90 Aligned_cols=225 Identities=23% Similarity=0.345 Sum_probs=163.8
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEe
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~pfi~i 295 (703)
.+-++++++|+++....+.+++.. . ...+++|+||||||||++|+++|.++ +..++.+
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~---~---------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCR---R---------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhc---C---------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 455899999999988866655522 1 23479999999999999999999987 6789999
Q ss_pred echhHH--HHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEE
Q 005304 296 SGSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (703)
Q Consensus 296 s~se~~--~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVI 373 (703)
+++.+. ..|.|..+.+++.+|+.+++..|+||||||||.+.+.+... ++... ..+.|...+. +..+.+|
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~--~~~~~---~~~~L~~~l~----~g~i~~I 315 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS--GGSMD---ASNLLKPALS----SGKLRCI 315 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC--CccHH---HHHHHHHHHh----CCCeEEE
Confidence 998887 47889999999999999988889999999999997654321 11111 2233333333 5679999
Q ss_pred EecCCcc-----cccccccCCCccceeeeecCCChhhHHHHHHHHhcCC----CC-CccccHHHHHHhCCCCc-----HH
Q 005304 374 AATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK----KF-DADVSLDVIAMRTPGFS-----GA 438 (703)
Q Consensus 374 aaTN~p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~----~l-~~dvdl~~lA~~t~G~s-----ga 438 (703)
++||..+ ..|+++.| ||+ .|+|+.|+.+++.+|++...... .. -.+..+..++..+..|- |.
T Consensus 316 gaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ 392 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPD 392 (731)
T ss_pred EecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCH
Confidence 9999744 47999999 997 79999999999999999665432 11 12233555665554433 33
Q ss_pred HHHHHHHHHHHHHHHh----CCCCcCHHHHHHHHHHHHcC
Q 005304 439 DLANLLNEAAILAGRR----GKAAISSKEIDDSIDRIVAG 474 (703)
Q Consensus 439 dL~~lv~eAa~~A~r~----~~~~It~~di~~Al~~v~~g 474 (703)
-.-.++++|+....-+ ....|+.+|+.+++.++..-
T Consensus 393 kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tgi 432 (731)
T TIGR02639 393 KAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAHI 432 (731)
T ss_pred HHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhCC
Confidence 4456777776544322 23469999999999987543
No 56
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.74 E-value=3e-17 Score=195.91 Aligned_cols=164 Identities=30% Similarity=0.410 Sum_probs=124.2
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH---------
Q 005304 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV--------- 301 (703)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~--------- 301 (703)
+++.|++++|+++.+.+....... ...+..+||+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 469999999999998776432111 11223799999999999999999999999999999876542
Q ss_pred HHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcC-----cc--------CCC
Q 005304 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-----FE--------GNT 368 (703)
Q Consensus 302 ~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~-----~~--------~~~ 368 (703)
..|.|....++.+.|..+....| ||||||||.+.+... ++ ..+.|+..+|. |. ...
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~-----~~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s 462 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR-----GD-----PASALLEVLDPEQNNAFSDHYLDVPFDLS 462 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC-----CC-----HHHHHHHhcCHHhcCccccccCCceeccC
Confidence 24567777788888888866666 788999999964221 11 23445554442 11 124
Q ss_pred CeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHh
Q 005304 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG 414 (703)
Q Consensus 369 ~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l 414 (703)
++++|+|||.++.++++|++ ||+ .|+++.|+.+++.+|++.++
T Consensus 463 ~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 463 KVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 78999999999999999999 995 78999999999999998876
No 57
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.73 E-value=3e-17 Score=193.59 Aligned_cols=225 Identities=22% Similarity=0.320 Sum_probs=162.0
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEee
Q 005304 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSIS 296 (703)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~pfi~is 296 (703)
.=.++.++|.++..+++.+++..- .+.++||+||||||||++|+++|... +..++.++
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r~------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCRR------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhcc------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 446889999999988877766441 13378999999999999999999864 45566666
Q ss_pred chhHH--HHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEE
Q 005304 297 GSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIA 374 (703)
Q Consensus 297 ~se~~--~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIa 374 (703)
.+.+. ..|.|..+.+++.+|+.+.+..++||||||||.+.+.+... ++..+...++..++ .+..+.+|+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~--~g~~d~~nlLkp~L-------~~g~i~vIg 320 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAANLIKPLL-------SSGKIRVIG 320 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCC--CcHHHHHHHHHHHH-------hCCCeEEEe
Confidence 66555 45788889999999999988889999999999997654321 11222222333333 256799999
Q ss_pred ecCCcc-----cccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCcccc-----HHHHHHh-----CCCCcHHH
Q 005304 375 ATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS-----LDVIAMR-----TPGFSGAD 439 (703)
Q Consensus 375 aTN~p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvd-----l~~lA~~-----t~G~sgad 439 (703)
+||.++ ..|++|.| ||+ .|.|+.|+.+++..||+.+........+++ +...+.. +.-+-|..
T Consensus 321 ATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdK 397 (758)
T PRK11034 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_pred cCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHH
Confidence 999875 47999999 996 799999999999999998765544433333 2222221 23355667
Q ss_pred HHHHHHHHHHHHH----HhCCCCcCHHHHHHHHHHHHcCc
Q 005304 440 LANLLNEAAILAG----RRGKAAISSKEIDDSIDRIVAGM 475 (703)
Q Consensus 440 L~~lv~eAa~~A~----r~~~~~It~~di~~Al~~v~~g~ 475 (703)
...++++|+.... ...+..|+.+|+.+.+.+...-+
T Consensus 398 aidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgip 437 (758)
T PRK11034 398 AIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIP 437 (758)
T ss_pred HHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCCC
Confidence 8889999986442 22345689999999998876443
No 58
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.70 E-value=8.4e-16 Score=170.89 Aligned_cols=242 Identities=19% Similarity=0.334 Sum_probs=160.4
Q ss_pred CCCcccccc-ccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEeech
Q 005304 225 NTGVTFDDV-AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGS 298 (703)
Q Consensus 225 ~~~~~f~dv-~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~s 298 (703)
.+..+|+++ +|.+. ......+.....++. ....+++||||||+|||+|++++++++ +..++++++.
T Consensus 104 ~~~~tfd~fi~g~~n-~~a~~~~~~~~~~~~-------~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 104 NPKYTFDNFVVGKSN-RLAHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CCCCcccccccCCcH-HHHHHHHHHHHhCcC-------ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 356789994 45433 222222333333332 223479999999999999999999876 6789999999
Q ss_pred hHHHHHhhhhhh-HHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005304 299 EFVEMFVGVGAS-RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (703)
Q Consensus 299 e~~~~~~G~~~~-~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (703)
+|...+...... .+..+.+..+ .+.+|+|||+|.+.++. ..+..+..++..+ ..+...+||+++.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~---------~~~~~l~~~~n~~---~~~~~~iiits~~ 241 (405)
T TIGR00362 176 KFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE---------RTQEEFFHTFNAL---HENGKQIVLTSDR 241 (405)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH---------HHHHHHHHHHHHH---HHCCCCEEEecCC
Confidence 987665433211 1222222222 35799999999984321 1222333333322 2233456666665
Q ss_pred Cccc---ccccccCCCccce--eeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005304 378 RADI---LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (703)
Q Consensus 378 ~p~~---LD~aLlRpgRfdr--~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A 451 (703)
.|.. +++.+.+ ||.. .+.+++||.++|..|++..+....+. ++..++.||.+..+ +.++|+.+++.....|
T Consensus 242 ~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 242 PPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYA 318 (405)
T ss_pred CHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 5654 5678888 8875 79999999999999999998765543 23337788888775 7899999999988887
Q ss_pred HHhCCCCcCHHHHHHHHHHHHcCcCCcccccCCcchhhhHHHHHHHHHHhh
Q 005304 452 GRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTL 502 (703)
Q Consensus 452 ~r~~~~~It~~di~~Al~~v~~g~~~~~~~~~~~~~~va~hEaGhAlv~~~ 502 (703)
...+ ..||.+.+.+++...... .++.+..+++-++|...+
T Consensus 319 ~~~~-~~it~~~~~~~L~~~~~~----------~~~~it~~~I~~~Va~~~ 358 (405)
T TIGR00362 319 SLTG-KPITLELAKEALKDLLRA----------KKKEITIENIQEVVAKYY 358 (405)
T ss_pred HHhC-CCCCHHHHHHHHHHhccc----------cCCCCCHHHHHHHHHHHc
Confidence 6555 569999999998765322 123467788888887654
No 59
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.70 E-value=6.4e-16 Score=174.16 Aligned_cols=244 Identities=19% Similarity=0.308 Sum_probs=161.0
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEeechh
Q 005304 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSE 299 (703)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~se 299 (703)
.+..+|++++..+.....+..+.....++. ....+++||||||+|||+|++++++++ +..++++++.+
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~~-------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCcC-------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 456789996543433333333333333332 123479999999999999999999987 56799999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005304 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (703)
Q Consensus 300 ~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (703)
|...+.........+-|..... .+++|+|||+|.+..++ ..++.+..++..+ ..+...+||+++..|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~---------~~~~~l~~~~n~l---~~~~~~iiits~~~p 255 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE---------RTQEEFFHTFNAL---HEAGKQIVLTSDRPP 255 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH---------HHHHHHHHHHHHH---HHCCCcEEEECCCCH
Confidence 8876654432222223333222 46799999999984321 1222233333222 223345666666666
Q ss_pred cc---ccccccCCCccce--eeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005304 380 DI---LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGR 453 (703)
Q Consensus 380 ~~---LD~aLlRpgRfdr--~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r 453 (703)
.. +++.+.+ ||.. .+.+..||.++|.+|++..+...++. ++..++.||....| +.++|..+++.....|..
T Consensus 256 ~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~ 332 (450)
T PRK00149 256 KELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASL 332 (450)
T ss_pred HHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHh
Confidence 54 6788888 8964 79999999999999999988754432 22337888888775 799999999998887766
Q ss_pred hCCCCcCHHHHHHHHHHHHcCcCCcccccCCcchhhhHHHHHHHHHHhh
Q 005304 454 RGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTL 502 (703)
Q Consensus 454 ~~~~~It~~di~~Al~~v~~g~~~~~~~~~~~~~~va~hEaGhAlv~~~ 502 (703)
.+ ..||.+.+.+++..+.... ++.+...++-++|+..+
T Consensus 333 ~~-~~it~~~~~~~l~~~~~~~----------~~~~~~~~i~~~v~~~~ 370 (450)
T PRK00149 333 TG-KPITLELAKEALKDLLAAQ----------KKKITIENIQKVVAEYY 370 (450)
T ss_pred hC-CCCCHHHHHHHHHHhhccC----------CCCCCHHHHHHHHHHHc
Confidence 55 4699999999998764211 12245566666666543
No 60
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.69 E-value=1.8e-15 Score=165.30 Aligned_cols=222 Identities=21% Similarity=0.281 Sum_probs=153.1
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcC---------CCEEEeech
Q 005304 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSISGS 298 (703)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~---------~pfi~is~s 298 (703)
...++++|.++.+++|...+...... ..+.+++|+||||||||++++++++++. +++++++|.
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~--------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRG--------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 34568999999999888887653221 2345799999999999999999987652 678899985
Q ss_pred hHHH----------HHh--hh--------hhhHHHHHHHHHH-hcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHH
Q 005304 299 EFVE----------MFV--GV--------GASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (703)
Q Consensus 299 e~~~----------~~~--G~--------~~~~ir~lF~~A~-~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~L 357 (703)
...+ .+. +. ..+....+++... ...+.||+|||+|.+... .+..+.+|
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----------~~~~L~~l 152 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----------DDDLLYQL 152 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----------CcHHHHhH
Confidence 4321 111 11 0122344455443 245789999999999511 11355666
Q ss_pred HhhhcC-ccCCCCeEEEEecCCcc---cccccccCCCccc-eeeeecCCChhhHHHHHHHHhcCC----CCCccc-c-HH
Q 005304 358 LTEMDG-FEGNTGIIVIAATNRAD---ILDSALLRPGRFD-RQVTVDVPDIRGRTEILKVHGSNK----KFDADV-S-LD 426 (703)
Q Consensus 358 L~~ld~-~~~~~~ViVIaaTN~p~---~LD~aLlRpgRfd-r~I~i~~Pd~~eR~~IL~~~l~~~----~l~~dv-d-l~ 426 (703)
+...+. ...+.++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++.++... .+.+++ + +.
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~ 230 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCA 230 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHH
Confidence 554221 12235789999999876 57788877 675 579999999999999999887521 122221 0 22
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 005304 427 VIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (703)
Q Consensus 427 ~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v 471 (703)
.++..+.| ..+.+.++|+.|+..|..++...|+.+|+.+|++.+
T Consensus 231 ~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 231 ALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 34444555 466777899999999999999999999999999876
No 61
>PRK04195 replication factor C large subunit; Provisional
Probab=99.69 E-value=8.1e-16 Score=174.71 Aligned_cols=212 Identities=23% Similarity=0.293 Sum_probs=150.8
Q ss_pred cccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechh
Q 005304 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (703)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se 299 (703)
.|.+++++.+|+|++|++++++.+.+.+....+. .+++++||+||||||||++|+++|++++.+++.+++++
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g--------~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKG--------KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 5778899999999999999999999988654421 23679999999999999999999999999999999987
Q ss_pred HHHHHhhhhhhHHHHHHHHHHh------cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEE
Q 005304 300 FVEMFVGVGASRVRDLFKKAKE------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (703)
Q Consensus 300 ~~~~~~G~~~~~ir~lF~~A~~------~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVI 373 (703)
.... ..++.+...+.. ..+.||+|||+|.+..+. ....++.|+..++ ..+..+|
T Consensus 75 ~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~----~~~~~iI 134 (482)
T PRK04195 75 QRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIK----KAKQPII 134 (482)
T ss_pred cccH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHH----cCCCCEE
Confidence 5421 123333333221 246799999999984311 1123445555554 2234566
Q ss_pred EecCCcccccc-cccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005304 374 AATNRADILDS-ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (703)
Q Consensus 374 aaTN~p~~LD~-aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A 451 (703)
+++|.+..+++ .+++ |+ ..|.|+.|+..+...+++..+...++. ++..+..|+..+.| |++.+++.....+
T Consensus 135 li~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~~a 207 (482)
T PRK04195 135 LTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQAIA 207 (482)
T ss_pred EeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHh
Confidence 67888888777 5554 44 579999999999999999888655433 23347778877654 7777777666533
Q ss_pred HHhCCCCcCHHHHHHHH
Q 005304 452 GRRGKAAISSKEIDDSI 468 (703)
Q Consensus 452 ~r~~~~~It~~di~~Al 468 (703)
.+...|+.+++....
T Consensus 208 --~~~~~it~~~v~~~~ 222 (482)
T PRK04195 208 --EGYGKLTLEDVKTLG 222 (482)
T ss_pred --cCCCCCcHHHHHHhh
Confidence 355678888887554
No 62
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=8.2e-17 Score=181.23 Aligned_cols=175 Identities=25% Similarity=0.427 Sum_probs=135.1
Q ss_pred ccccccCCCccccccccchHHHHHHHHHHHH--hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEee
Q 005304 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF--LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (703)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~--l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (703)
.+.......+--+|..|++++|+++.|++.- |+.. ...+-++|+||||+|||+++|+||..+|..|+.+|
T Consensus 399 n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs--------~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfS 470 (906)
T KOG2004|consen 399 NLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGS--------VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFS 470 (906)
T ss_pred hhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhccc--------CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEe
Confidence 3444444455667999999999999998865 3332 22446899999999999999999999999999999
Q ss_pred chhHHH---------HHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccC-
Q 005304 297 GSEFVE---------MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG- 366 (703)
Q Consensus 297 ~se~~~---------~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~- 366 (703)
...+.+ .|+|..+.++-+.++..+-..| +++|||||.+|+ +. . ++ -...||+.||.-++
T Consensus 471 vGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~--g~--q-GD-----PasALLElLDPEQNa 539 (906)
T KOG2004|consen 471 VGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS--GH--Q-GD-----PASALLELLDPEQNA 539 (906)
T ss_pred ccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC--CC--C-CC-----hHHHHHHhcChhhcc
Confidence 765543 5899999999999998887777 666899999972 11 1 11 12345555543211
Q ss_pred ------------CCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhc
Q 005304 367 ------------NTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (703)
Q Consensus 367 ------------~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~ 415 (703)
-..|+||||+|..+.++++|+. |+. .|+++-+..++...|.+.|+-
T Consensus 540 nFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 540 NFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred chhhhccccccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 1369999999999999999999 885 899999999999999998874
No 63
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=7.6e-16 Score=171.88 Aligned_cols=213 Identities=19% Similarity=0.242 Sum_probs=153.3
Q ss_pred ccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE-------E
Q 005304 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------F 293 (703)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pf-------i 293 (703)
..++.++.+|+||+|++.+...|...+.. .+.+..+||+||||||||++|+++|+.+++.- .
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg 76 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN 76 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC
Confidence 34567888999999999999988877753 23455799999999999999999999887631 0
Q ss_pred E-eechhHHHH----------HhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHH
Q 005304 294 S-ISGSEFVEM----------FVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (703)
Q Consensus 294 ~-is~se~~~~----------~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL 358 (703)
. -+|..+... -...+...+|++.+.+.. ....|+||||+|.+. ...+|.||
T Consensus 77 ~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------------~~A~NALL 142 (484)
T PRK14956 77 ECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------------DQSFNALL 142 (484)
T ss_pred CCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------------HHHHHHHH
Confidence 0 011111110 011234556766665532 345699999999992 34678888
Q ss_pred hhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcH
Q 005304 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSG 437 (703)
Q Consensus 359 ~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sg 437 (703)
..|+. ...++++|.+|+.++.+.+.+++ |+. .+.|..++.++..+.++..+...++. ++..+..|++.+.| +.
T Consensus 143 KtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~ 216 (484)
T PRK14956 143 KTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SV 216 (484)
T ss_pred HHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hH
Confidence 88874 34678999999999999999999 874 67899999888888888887655443 33347788888886 68
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 438 adL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
++.-++++.+...+ ...|+.+++.+.+
T Consensus 217 RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 217 RDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 89889888876432 2358888876655
No 64
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.68 E-value=1.7e-15 Score=169.90 Aligned_cols=244 Identities=16% Similarity=0.238 Sum_probs=161.7
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEeechh
Q 005304 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSE 299 (703)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~se 299 (703)
.+..+|++++-.+........+.+...++.. ..+++||||||+|||+|++++++++ +..++++++.+
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~~--------~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPGR--------YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcCC--------CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 4677999988444444444444444444332 3369999999999999999999975 56799999999
Q ss_pred HHHHHhhhhh-hHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 300 FVEMFVGVGA-SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 300 ~~~~~~G~~~-~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
|...+..... ..+. -|.......+.+|+|||++.+.++. ..+..+..++.. ...+...+||++.+.
T Consensus 171 f~~~~~~~~~~~~~~-~f~~~~~~~~dvLlIDDi~~l~~~~---------~~q~elf~~~n~---l~~~~k~iIitsd~~ 237 (440)
T PRK14088 171 FLNDLVDSMKEGKLN-EFREKYRKKVDVLLIDDVQFLIGKT---------GVQTELFHTFNE---LHDSGKQIVICSDRE 237 (440)
T ss_pred HHHHHHHHHhcccHH-HHHHHHHhcCCEEEEechhhhcCcH---------HHHHHHHHHHHH---HHHcCCeEEEECCCC
Confidence 8876543321 1222 2333333467899999999984321 112222222222 222344566666666
Q ss_pred ccc---ccccccCCCccce--eeeecCCChhhHHHHHHHHhcCCC--CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005304 379 ADI---LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKK--FDADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (703)
Q Consensus 379 p~~---LD~aLlRpgRfdr--~I~i~~Pd~~eR~~IL~~~l~~~~--l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A 451 (703)
|.. +++.+.+ ||.. .+.+.+||.+.|.+|++..+.... ++++ .++.||....| +.++|+.+++.....+
T Consensus 238 p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~e-v~~~Ia~~~~~-~~R~L~g~l~~l~~~~ 313 (440)
T PRK14088 238 PQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_pred HHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHhcccc-CHHHHHHHHHHHHHHH
Confidence 664 5567887 7754 788999999999999999886543 3333 37788888775 7899999999887777
Q ss_pred HHhCCCCcCHHHHHHHHHHHHcCcCCcccccCCcchhhhHHHHHHHHHHhh
Q 005304 452 GRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTL 502 (703)
Q Consensus 452 ~r~~~~~It~~di~~Al~~v~~g~~~~~~~~~~~~~~va~hEaGhAlv~~~ 502 (703)
...+ ..||.+.+.+++..++... ..+..+..+++-.+|+..+
T Consensus 314 ~~~~-~~it~~~a~~~L~~~~~~~--------~~~~~i~~~~I~~~V~~~~ 355 (440)
T PRK14088 314 ETTG-EEVDLKEAILLLKDFIKPN--------RVKAMDPIDELIEIVAKVT 355 (440)
T ss_pred HHhC-CCCCHHHHHHHHHHHhccc--------cccCCCCHHHHHHHHHHHc
Confidence 6655 5699999999998764221 1122355677777776543
No 65
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.67 E-value=1.4e-15 Score=169.61 Aligned_cols=203 Identities=28% Similarity=0.412 Sum_probs=147.2
Q ss_pred ccCCCccccccccchHHHHH---HHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechh
Q 005304 223 EPNTGVTFDDVAGVDEAKQD---FMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~---L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se 299 (703)
++.++.+|+|++|+++.... +.++++. . .+.+++|+||||||||++|+++|+..+.+|+.+++..
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~---~---------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEA---G---------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHHc---C---------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 34567789999999999766 6665532 1 1337999999999999999999999999999998863
Q ss_pred HHHHHhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEe
Q 005304 300 FVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (703)
Q Consensus 300 ~~~~~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaa 375 (703)
. +...++.+++.+.. ....||||||+|.+. . ...+.|+..++ +..+++|++
T Consensus 72 ~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----------~---~~q~~LL~~le----~~~iilI~a 126 (413)
T PRK13342 72 S-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----------K---AQQDALLPHVE----DGTITLIGA 126 (413)
T ss_pred c-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----------H---HHHHHHHHHhh----cCcEEEEEe
Confidence 2 23456666666642 356899999999982 1 23345555554 245677776
Q ss_pred cC--CcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCC-----CCCccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 005304 376 TN--RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK-----KFDADVSLDVIAMRTPGFSGADLANLLNEAA 448 (703)
Q Consensus 376 TN--~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~-----~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa 448 (703)
|+ ....+++++++ |+ ..+.+++|+.++...+++..+... .+. +..+..+++.+.| +.+.+.++++.+.
T Consensus 127 tt~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 127 TTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred CCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 53 34578999999 88 688999999999999998876542 222 2236677777754 6777778777766
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHH
Q 005304 449 ILAGRRGKAAISSKEIDDSIDRIV 472 (703)
Q Consensus 449 ~~A~r~~~~~It~~di~~Al~~v~ 472 (703)
.. ...|+.+++.+++....
T Consensus 202 ~~-----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 202 LG-----VDSITLELLEEALQKRA 220 (413)
T ss_pred Hc-----cCCCCHHHHHHHHhhhh
Confidence 43 45799999999987643
No 66
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.5e-15 Score=175.28 Aligned_cols=210 Identities=17% Similarity=0.209 Sum_probs=149.6
Q ss_pred ccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEE--Ee---
Q 005304 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF--SI--- 295 (703)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi--~i--- 295 (703)
..+++++.+|+||+|++++++.|.+.++. .++++.+||+||+|||||++|+++|+.+++.-- ..
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG 74 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCG 74 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCc
Confidence 34577888999999999999988887642 245667899999999999999999998865210 00
Q ss_pred ---echhHHH----------HHhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHH
Q 005304 296 ---SGSEFVE----------MFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (703)
Q Consensus 296 ---s~se~~~----------~~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL 358 (703)
+|..+.+ .....+...++++++.+.. ....|+||||+|.|. ....|.||
T Consensus 75 ~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--------------~~A~NALL 140 (830)
T PRK07003 75 VCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--------------NHAFNAML 140 (830)
T ss_pred ccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC--------------HHHHHHHH
Confidence 1111110 0011234557777776642 234699999999992 23577888
Q ss_pred hhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcH
Q 005304 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSG 437 (703)
Q Consensus 359 ~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sg 437 (703)
+.|+.. ..+++||.+||.++.|.+.+++ |+ .++.|..++.++..+.|+..+...++. ++..+..|++.+.| +.
T Consensus 141 KtLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-sm 214 (830)
T PRK07003 141 KTLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SM 214 (830)
T ss_pred HHHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888743 4478899999999999999998 87 578999999999999998887655443 33347788888886 67
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcCHHHHH
Q 005304 438 ADLANLLNEAAILAGRRGKAAISSKEID 465 (703)
Q Consensus 438 adL~~lv~eAa~~A~r~~~~~It~~di~ 465 (703)
++..+++.++.... ...|+.+++.
T Consensus 215 RdALsLLdQAia~~----~~~It~~~V~ 238 (830)
T PRK07003 215 RDALSLTDQAIAYS----ANEVTETAVS 238 (830)
T ss_pred HHHHHHHHHHHHhc----cCCcCHHHHH
Confidence 88888888776433 2345555444
No 67
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.5e-15 Score=171.32 Aligned_cols=206 Identities=17% Similarity=0.291 Sum_probs=147.3
Q ss_pred ccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCC------------
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV------------ 290 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~------------ 290 (703)
++.++.+|+|++|++++++.|...+.. .+.|.++||+||||||||++|+++|+.+++
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 466788999999999998888776642 135667999999999999999999998765
Q ss_pred ------------CEEEeechhHHHHHhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHH
Q 005304 291 ------------PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 354 (703)
Q Consensus 291 ------------pfi~is~se~~~~~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l 354 (703)
.++.++++. ..+...+|.+.+.+.. ....||||||+|.+. ...+
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------------~~a~ 134 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------------KEAF 134 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------------HHHH
Confidence 244444321 1223456666655532 234699999999982 2346
Q ss_pred HHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCC
Q 005304 355 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTP 433 (703)
Q Consensus 355 ~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~ 433 (703)
+.|+..++.. ...+++|.+|+.++.+++++.+ |+ ..+.+.+|+..+...+++..+...+.. ++..+..|+..+.
T Consensus 135 ~~LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~ 209 (472)
T PRK14962 135 NALLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRAS 209 (472)
T ss_pred HHHHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 7777777743 3467788788788899999998 77 478999999999999998887554332 2233777888776
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 005304 434 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (703)
Q Consensus 434 G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~ 469 (703)
| +.+++.+.++.+...+ + ..||.+++.+++.
T Consensus 210 G-dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~ 240 (472)
T PRK14962 210 G-GLRDALTMLEQVWKFS---E-GKITLETVHEALG 240 (472)
T ss_pred C-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHc
Confidence 5 5666666666544332 2 3499999998874
No 68
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=9.6e-16 Score=174.98 Aligned_cols=210 Identities=17% Similarity=0.229 Sum_probs=150.7
Q ss_pred cccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 291 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p---------- 291 (703)
.+++++.+|+||+|++++++.|.+.+..- ++++.+||+||+|+|||++|+.+|+.+++.
T Consensus 7 arKYRPqtFddVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~ 75 (700)
T PRK12323 7 ARKWRPRDFTTLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITA 75 (700)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCC
Confidence 45678889999999999999988888632 345679999999999999999999998761
Q ss_pred --EEEe-echhHH-----HHH-----hhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHH
Q 005304 292 --FFSI-SGSEFV-----EMF-----VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 354 (703)
Q Consensus 292 --fi~i-s~se~~-----~~~-----~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l 354 (703)
.-.+ +|..+. +.+ ...+.+.+|++.+.+.. ....|+||||+|.+. ....
T Consensus 76 ~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--------------~~Aa 141 (700)
T PRK12323 76 QPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--------------NHAF 141 (700)
T ss_pred CCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------------HHHH
Confidence 1111 111111 000 11234567777776532 334799999999992 3467
Q ss_pred HHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCcc-ccHHHHHHhCC
Q 005304 355 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTP 433 (703)
Q Consensus 355 ~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~lA~~t~ 433 (703)
|.||+.|+. ...+++||.+||.++.|.+.+++ |+ ..+.|..++.++..+.++..+.+..+..+ ..+..|++.+.
T Consensus 142 NALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~ 216 (700)
T PRK12323 142 NAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQ 216 (700)
T ss_pred HHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 889998885 34578999999999999999999 87 57899999999998888877765444332 23677788877
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHH
Q 005304 434 GFSGADLANLLNEAAILAGRRGKAAISSKEIDD 466 (703)
Q Consensus 434 G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~ 466 (703)
| +.++..+++.++... +...|+.+++.+
T Consensus 217 G-s~RdALsLLdQaia~----~~~~It~~~V~~ 244 (700)
T PRK12323 217 G-SMRDALSLTDQAIAY----SAGNVSEEAVRG 244 (700)
T ss_pred C-CHHHHHHHHHHHHHh----ccCCcCHHHHHH
Confidence 6 788888888876642 233566655544
No 69
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.66 E-value=5.1e-15 Score=159.63 Aligned_cols=214 Identities=19% Similarity=0.265 Sum_probs=141.2
Q ss_pred ccccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCEE
Q 005304 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFF 293 (703)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~-----~pfi 293 (703)
.+|.+++.+.+|++++|++++++.+.+.+.. + . ..+++|+||||||||++|+++++++. .+++
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~---~--------~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~ 70 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDS---P--------N-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFT 70 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhC---C--------C-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceE
Confidence 3677888999999999999999988887642 1 1 12699999999999999999999873 4678
Q ss_pred EeechhHHHHH-------------hhh-------hhhHHHHHHHHHHh-----cCCeEEEEcCcccccccCCCCCCCCCh
Q 005304 294 SISGSEFVEMF-------------VGV-------GASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGIGGGND 348 (703)
Q Consensus 294 ~is~se~~~~~-------------~G~-------~~~~ir~lF~~A~~-----~aP~ILfIDEID~L~~~r~~~~~~~~~ 348 (703)
+++++++.... .+. ....++.+.+.... ..+.+|+|||+|.+. .
T Consensus 71 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----------~ 139 (337)
T PRK12402 71 EFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----------E 139 (337)
T ss_pred EechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----------H
Confidence 99988765321 011 11223333333322 224699999999882 2
Q ss_pred HHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHH
Q 005304 349 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDV 427 (703)
Q Consensus 349 e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~ 427 (703)
... +.|+..++.... ...+|.+++.+..+.+.+.+ |+ ..+.+.+|+.++...+++..+.+.+.. ++..+..
T Consensus 140 ~~~---~~L~~~le~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~ 211 (337)
T PRK12402 140 DAQ---QALRRIMEQYSR--TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLEL 211 (337)
T ss_pred HHH---HHHHHHHHhccC--CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 222 334444443332 23455566666677777877 65 478999999999999999887665543 3334777
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 005304 428 IAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (703)
Q Consensus 428 lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~ 469 (703)
++..+.| +.+++. +.....+. +...||.+++.+++.
T Consensus 212 l~~~~~g-dlr~l~---~~l~~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 212 IAYYAGG-DLRKAI---LTLQTAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred HHHHcCC-CHHHHH---HHHHHHHH--cCCCCCHHHHHHHhC
Confidence 8877743 455544 44443332 234799999887654
No 70
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.6e-16 Score=178.31 Aligned_cols=177 Identities=28% Similarity=0.416 Sum_probs=136.9
Q ss_pred ccccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeech
Q 005304 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (703)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s 298 (703)
+++......+-=.|..|.+++|+++.|.+.-.+.... +.. .-++|+||||+|||+|++.||..++.+|+.++..
T Consensus 311 ~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~---~kG---pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLG 384 (782)
T COG0466 311 KLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKK---LKG---PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLG 384 (782)
T ss_pred hhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhcc---CCC---cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecC
Confidence 3343444455567899999999999998765433221 111 2488999999999999999999999999999986
Q ss_pred hHHH---------HHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCC--
Q 005304 299 EFVE---------MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN-- 367 (703)
Q Consensus 299 e~~~---------~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~-- 367 (703)
...+ .|+|..+.++-+-..+|....| +++|||||.++.. .+-.-...||+.+|.-+++
T Consensus 385 GvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss----------~rGDPaSALLEVLDPEQN~~F 453 (782)
T COG0466 385 GVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS----------FRGDPASALLEVLDPEQNNTF 453 (782)
T ss_pred ccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC----------CCCChHHHHHhhcCHhhcCch
Confidence 5543 5899999999999999988888 6668999999532 1222334566666532221
Q ss_pred -----------CCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhc
Q 005304 368 -----------TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (703)
Q Consensus 368 -----------~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~ 415 (703)
.+|+||+|+|..+.++.+|+. |+. +|++.-+..++..+|-+.|+-
T Consensus 454 ~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 454 SDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred hhccccCccchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcc
Confidence 269999999999999999999 885 899999999999999998863
No 71
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.66 E-value=6.1e-15 Score=162.90 Aligned_cols=223 Identities=21% Similarity=0.251 Sum_probs=153.5
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEeechhHH-
Q 005304 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEFV- 301 (703)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~se~~- 301 (703)
...+.++|.++..+++...+...... ..|.+++|+||||||||++++.+++++ ++++++++|....
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~--------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRG--------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCC--------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 35678999999999888877543221 224579999999999999999999876 5789999986432
Q ss_pred ---------HHHhhh-------h-hhHHHHHHHHHHh-cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcC
Q 005304 302 ---------EMFVGV-------G-ASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 363 (703)
Q Consensus 302 ---------~~~~G~-------~-~~~ir~lF~~A~~-~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~ 363 (703)
..+.+. . ...+..+.+...+ ..+.||+|||+|.+.... ..+.+..|+..++.
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~----------~~~~l~~l~~~~~~ 168 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE----------GNDVLYSLLRAHEE 168 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC----------CchHHHHHHHhhhc
Confidence 122120 1 1112223333322 456899999999995211 12356667666654
Q ss_pred ccCCCCeEEEEecCCcc---cccccccCCCccc-eeeeecCCChhhHHHHHHHHhcCCC---CCccccHHHHHHhCCC--
Q 005304 364 FEGNTGIIVIAATNRAD---ILDSALLRPGRFD-RQVTVDVPDIRGRTEILKVHGSNKK---FDADVSLDVIAMRTPG-- 434 (703)
Q Consensus 364 ~~~~~~ViVIaaTN~p~---~LD~aLlRpgRfd-r~I~i~~Pd~~eR~~IL~~~l~~~~---l~~dvdl~~lA~~t~G-- 434 (703)
.. ..++.+|+++|..+ .+++.+.+ ||. ..|.+++++.++..+|++.++.... .-.+..++.+++.+.+
T Consensus 169 ~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 245 (394)
T PRK00411 169 YP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREH 245 (394)
T ss_pred cC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhc
Confidence 43 23688888888654 56777766 553 4789999999999999998875321 1122235666666633
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 005304 435 FSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (703)
Q Consensus 435 ~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v 471 (703)
...+.+.++|..|+..|..++...|+.+|+.+|++++
T Consensus 246 Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 246 GDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 2345666889999999999999999999999999987
No 72
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3.7e-15 Score=163.55 Aligned_cols=213 Identities=23% Similarity=0.271 Sum_probs=149.9
Q ss_pred cccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE-------
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS------- 294 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~------- 294 (703)
.++.++.+|+||+|++++++.+...+.. .+.|+.+||+||||+|||++|+++|+++.+..-.
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~ 75 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRK 75 (363)
T ss_pred HHHhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 4567788999999999999988877742 1345679999999999999999999988642110
Q ss_pred -eechhHHHH----------HhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHh
Q 005304 295 -ISGSEFVEM----------FVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (703)
Q Consensus 295 -is~se~~~~----------~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~ 359 (703)
.+|.++... ........++++.+.+.. ....|++|||+|.+. ....+.||.
T Consensus 76 c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------------~~a~naLLk 141 (363)
T PRK14961 76 CIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------------RHSFNALLK 141 (363)
T ss_pred CHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------------HHHHHHHHH
Confidence 011111110 001233456666665432 223599999999982 235567888
Q ss_pred hhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHH
Q 005304 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGA 438 (703)
Q Consensus 360 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sga 438 (703)
.++.. ...+.+|.+|+.++.+.+.+.+ |+ ..+++++|+.++..++++..+...+.. ++..+..++..+.| +++
T Consensus 142 ~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R 215 (363)
T PRK14961 142 TLEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMR 215 (363)
T ss_pred HHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 77753 3456777778888889989888 77 578999999999999999877665432 23346778887765 788
Q ss_pred HHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 005304 439 DLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (703)
Q Consensus 439 dL~~lv~eAa~~A~r~~~~~It~~di~~Al~ 469 (703)
++.++++.+... +...|+.+++.+++.
T Consensus 216 ~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 216 DALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 888888776543 456799988887763
No 73
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.9e-15 Score=171.47 Aligned_cols=206 Identities=18% Similarity=0.274 Sum_probs=151.0
Q ss_pred cccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 291 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p---------- 291 (703)
.++.++.+|+||+|++.+++.|...+.. .++++.+||+||||+|||++|+++|+.+++.
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~ 74 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEV 74 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCcc
Confidence 3466788999999999999988887752 2456689999999999999999999988652
Q ss_pred --------------EEEeechhHHHHHhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHH
Q 005304 292 --------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (703)
Q Consensus 292 --------------fi~is~se~~~~~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~ 353 (703)
++.+++++ ..+...+|++.+.+.. ....|++|||+|.+. ...
T Consensus 75 C~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS--------------~~A 134 (702)
T PRK14960 75 CATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS--------------THS 134 (702)
T ss_pred CHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC--------------HHH
Confidence 22332221 1234557777666532 334699999999982 235
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhC
Q 005304 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (703)
Q Consensus 354 l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t 432 (703)
.+.|+..++.. ..++.+|.+|+.+..+.+.+++ |+ .++.|..++.++..+.++..+.+.+.. .+..+..|++.+
T Consensus 135 ~NALLKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S 209 (702)
T PRK14960 135 FNALLKTLEEP--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESA 209 (702)
T ss_pred HHHHHHHHhcC--CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 67788888753 3567788888888888888887 77 478999999999999998887765543 233377788887
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
.| +.+++.+++..+... +...|+.+++...+
T Consensus 210 ~G-dLRdALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 210 QG-SLRDALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 65 788888888776532 45678888876643
No 74
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.65 E-value=7.1e-15 Score=168.13 Aligned_cols=245 Identities=19% Similarity=0.267 Sum_probs=160.3
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEeechh
Q 005304 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSE 299 (703)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~se 299 (703)
....+|++++..+........+.....++. .....++|||++|+|||+|++|+++++ +..++++++.+
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee 354 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEAPA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE 354 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhCcc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 356799999855443322222222233221 112359999999999999999999976 57899999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005304 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (703)
Q Consensus 300 ~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (703)
|.+.+.........+.|.... ..+++|+||||+.+..+ +..+..+..+++.+- .+.+-+||++...|
T Consensus 355 f~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gk---------e~tqeeLF~l~N~l~---e~gk~IIITSd~~P 421 (617)
T PRK14086 355 FTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDK---------ESTQEEFFHTFNTLH---NANKQIVLSSDRPP 421 (617)
T ss_pred HHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCC---------HHHHHHHHHHHHHHH---hcCCCEEEecCCCh
Confidence 987765543332333454332 34689999999999532 222333334444332 23334555443334
Q ss_pred c---cccccccCCCccce--eeeecCCChhhHHHHHHHHhcCCCCCcc-ccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005304 380 D---ILDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSGADLANLLNEAAILAGR 453 (703)
Q Consensus 380 ~---~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~lA~~t~G~sgadL~~lv~eAa~~A~r 453 (703)
. .+++.|.+ ||.. .+.|..||.+.|.+||+.++....+..+ .-++.|+.+..+ +.++|+.+++.....+..
T Consensus 422 ~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~ 498 (617)
T PRK14086 422 KQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASL 498 (617)
T ss_pred HhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHh
Confidence 3 57788988 8876 7799999999999999999877655533 236778887764 789999999988777765
Q ss_pred hCCCCcCHHHHHHHHHHHHcCcCCcccccCCcchhhhHHHHHHHHHHhh
Q 005304 454 RGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTL 502 (703)
Q Consensus 454 ~~~~~It~~di~~Al~~v~~g~~~~~~~~~~~~~~va~hEaGhAlv~~~ 502 (703)
.+ ..||.+.++++++.++... .+..+...++-++|+..+
T Consensus 499 ~~-~~itl~la~~vL~~~~~~~---------~~~~it~d~I~~~Va~~f 537 (617)
T PRK14086 499 NR-QPVDLGLTEIVLRDLIPED---------SAPEITAAAIMAATADYF 537 (617)
T ss_pred hC-CCCCHHHHHHHHHHhhccc---------cCCcCCHHHHHHHHHHHh
Confidence 54 5699999999887654322 122344555666665543
No 75
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=4.9e-15 Score=167.90 Aligned_cols=216 Identities=20% Similarity=0.304 Sum_probs=157.5
Q ss_pred ccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEE-------
Q 005304 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF------- 293 (703)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi------- 293 (703)
+..+.++.+|+|++|++.++..|...+.. .+.|.++||+||||||||++|+++|+.+++.-.
T Consensus 11 la~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~ 79 (507)
T PRK06645 11 FARKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI 79 (507)
T ss_pred hhhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc
Confidence 44667888999999999999988876642 244668999999999999999999998865311
Q ss_pred -----EeechhHHHH----------HhhhhhhHHHHHHHHHHhc----CCeEEEEcCcccccccCCCCCCCCChHHHHHH
Q 005304 294 -----SISGSEFVEM----------FVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 354 (703)
Q Consensus 294 -----~is~se~~~~----------~~G~~~~~ir~lF~~A~~~----aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l 354 (703)
.-+|..+.+. -...+...++++++.+... ...|++|||+|.+. ...+
T Consensus 80 ~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------------~~a~ 145 (507)
T PRK06645 80 KTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------------KGAF 145 (507)
T ss_pred CCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------------HHHH
Confidence 0112222111 0112456788888777432 24699999999982 2457
Q ss_pred HHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCcc-ccHHHHHHhCC
Q 005304 355 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTP 433 (703)
Q Consensus 355 ~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~lA~~t~ 433 (703)
+.|+..++. ....+++|.+|+.++.+.+.+++ |+ ..+++..++.++...+++..+.+.+...+ ..+..|+..+.
T Consensus 146 naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~ 220 (507)
T PRK06645 146 NALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSE 220 (507)
T ss_pred HHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 778887774 34567888888888999999988 77 46889999999999999988876554322 33677888887
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 434 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 434 G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
| +.+++.++++.+...+... ...||.+++.+.+
T Consensus 221 G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~ll 253 (507)
T PRK06645 221 G-SARDAVSILDQAASMSAKS-DNIISPQVINQML 253 (507)
T ss_pred C-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHH
Confidence 6 8999999999887665322 2368888877654
No 76
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=3.4e-15 Score=169.96 Aligned_cols=207 Identities=16% Similarity=0.243 Sum_probs=151.1
Q ss_pred ccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 005304 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (703)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p--------- 291 (703)
..+++++.+|+||+|++++++.|...+..- +.|..+||+||||||||++|+++|+.+++.
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~~-----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 74 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQQ-----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCN 74 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCC
Confidence 345778889999999999999998888532 345579999999999999999999988653
Q ss_pred ---------------EEEeechhHHHHHhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHH
Q 005304 292 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (703)
Q Consensus 292 ---------------fi~is~se~~~~~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~ 352 (703)
+++++.+. ..+...+|++.+.+.. ....|++|||+|.+. ..
T Consensus 75 ~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls--------------~~ 134 (509)
T PRK14958 75 DCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS--------------GH 134 (509)
T ss_pred CCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC--------------HH
Confidence 33333321 2334557777766532 233699999999992 23
Q ss_pred HHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHh
Q 005304 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 431 (703)
Q Consensus 353 ~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~ 431 (703)
..|.||..|+.. ...+++|.+|+.+..+.+.+++ |+ ..++|..++..+....++..+.+.+.. .+..+..++..
T Consensus 135 a~naLLk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~ 209 (509)
T PRK14958 135 SFNALLKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARA 209 (509)
T ss_pred HHHHHHHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 567888888854 3457788888888888888888 76 467898888888888877777655443 23346778887
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 432 t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
+.| +.+++.+++..+... +...|+.+++.+.+
T Consensus 210 s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 210 ANG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred cCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 765 789999999877533 34568887776544
No 77
>PRK06893 DNA replication initiation factor; Validated
Probab=99.64 E-value=1.2e-14 Score=149.65 Aligned_cols=213 Identities=13% Similarity=0.110 Sum_probs=135.7
Q ss_pred ccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechh
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se 299 (703)
...+..+|++++|.+... .+..+...... .....++||||||||||+|++++|+++ +....+++..+
T Consensus 8 ~~~~~~~fd~f~~~~~~~-~~~~~~~~~~~---------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~ 77 (229)
T PRK06893 8 HQIDDETLDNFYADNNLL-LLDSLRKNFID---------LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK 77 (229)
T ss_pred CCCCcccccccccCChHH-HHHHHHHHhhc---------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence 345677999999877542 11112111111 111258999999999999999999875 45666776653
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005304 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (703)
Q Consensus 300 ~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (703)
.... ..++++..+ ...+|+|||++.+.. ....+..+..+++.+.. .+..+++++++..|
T Consensus 78 ~~~~--------~~~~~~~~~--~~dlLilDDi~~~~~---------~~~~~~~l~~l~n~~~~--~~~~illits~~~p 136 (229)
T PRK06893 78 SQYF--------SPAVLENLE--QQDLVCLDDLQAVIG---------NEEWELAIFDLFNRIKE--QGKTLLLISADCSP 136 (229)
T ss_pred hhhh--------hHHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHH--cCCcEEEEeCCCCh
Confidence 2211 112333332 347999999999842 22334445555554321 12234556666667
Q ss_pred cccc---ccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 005304 380 DILD---SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 455 (703)
Q Consensus 380 ~~LD---~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~ 455 (703)
..++ +.|.++.++...+.++.||.++|.+|++.++....+. ++.-++.|+++..| +.+.+.++++.....+..++
T Consensus 137 ~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~ 215 (229)
T PRK06893 137 HALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQAQ 215 (229)
T ss_pred HHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhcC
Confidence 7654 7888844445688999999999999999887654433 22236788888875 78889988887654343334
Q ss_pred CCCcCHHHHHHHH
Q 005304 456 KAAISSKEIDDSI 468 (703)
Q Consensus 456 ~~~It~~di~~Al 468 (703)
..||...+++++
T Consensus 216 -~~it~~~v~~~L 227 (229)
T PRK06893 216 -RKLTIPFVKEIL 227 (229)
T ss_pred -CCCCHHHHHHHh
Confidence 469988888765
No 78
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.64 E-value=5.3e-15 Score=177.50 Aligned_cols=218 Identities=22% Similarity=0.302 Sum_probs=150.9
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEe
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~pfi~i 295 (703)
.+-++++++|+++...++ ++.+.... ..+++|+||||||||++|+.+|... +..++.+
T Consensus 182 r~~~ld~~iGr~~ei~~~---i~~l~r~~---------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQM---IDILLRRR---------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred cCCCCCcccCCHHHHHHH---HHHHhcCC---------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 456899999999975544 44333221 2279999999999999999999875 2457788
Q ss_pred echhHH--HHHhhhhhhHHHHHHHHHHh-cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEE
Q 005304 296 SGSEFV--EMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (703)
Q Consensus 296 s~se~~--~~~~G~~~~~ir~lF~~A~~-~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViV 372 (703)
+.+.+. ..+.|..+.+++.+|+.++. ..++||||||||.+.+.++.. +..+ ..|.|+..+. ++.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~--~~~d----~~n~Lkp~l~----~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA--GQGD----AANLLKPALA----RGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc--cccc----HHHHhhHHhh----CCCeEE
Confidence 887766 35788889999999999865 468999999999997654321 1111 2233333333 677999
Q ss_pred EEecCCcc-----cccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-----ccccHHHHHHhCCCCc-----H
Q 005304 373 IAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-----ADVSLDVIAMRTPGFS-----G 437 (703)
Q Consensus 373 IaaTN~p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-----~dvdl~~lA~~t~G~s-----g 437 (703)
|+||+..+ .+|++|.| ||. .|.|+.|+.+++..||+.+.+..... .+..+..++..+.+|- |
T Consensus 320 IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LP 396 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLP 396 (852)
T ss_pred EEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCc
Confidence 99998754 48999999 995 89999999999999986555432211 2333666667666543 3
Q ss_pred HHHHHHHHHHHHHHHHh-CCCCcCHHHHHHHH
Q 005304 438 ADLANLLNEAAILAGRR-GKAAISSKEIDDSI 468 (703)
Q Consensus 438 adL~~lv~eAa~~A~r~-~~~~It~~di~~Al 468 (703)
.-.-.++.+|+...... ....+..+++++.+
T Consensus 397 DKAIdlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 397 DKAVSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred cHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 44557788887655433 33344445554443
No 79
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.62 E-value=4.6e-15 Score=156.47 Aligned_cols=206 Identities=28% Similarity=0.451 Sum_probs=141.1
Q ss_pred cCCCccccccccchHHHHH---HHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---EEEeec
Q 005304 224 PNTGVTFDDVAGVDEAKQD---FMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISG 297 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~---L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p---fi~is~ 297 (703)
..++.+++|.+|+++..-+ |+.+++.-+-| +++||||||||||+|||.|+....-+ |+.++.
T Consensus 131 rmRPktL~dyvGQ~hlv~q~gllrs~ieq~~ip------------SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA 198 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIP------------SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA 198 (554)
T ss_pred hcCcchHHHhcchhhhcCcchHHHHHHHcCCCC------------ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEec
Confidence 3456689999999987665 33333332222 59999999999999999999988766 777776
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHh-----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEE
Q 005304 298 SEFVEMFVGVGASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (703)
Q Consensus 298 se~~~~~~G~~~~~ir~lF~~A~~-----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViV 372 (703)
. ..+...+|++|+++++ ....|||||||+.+-+ . ....||-..+ ++.|++
T Consensus 199 t-------~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk-----------s---QQD~fLP~VE----~G~I~l 253 (554)
T KOG2028|consen 199 T-------NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK-----------S---QQDTFLPHVE----NGDITL 253 (554)
T ss_pred c-------ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh-----------h---hhhcccceec----cCceEE
Confidence 3 3445679999999865 3458999999999832 1 2233454433 677999
Q ss_pred EEec--CCcccccccccCCCccceeeeecCCChhhHHHHHHHHhc---C--C---CCC------ccccHHHHHHhCCCCc
Q 005304 373 IAAT--NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS---N--K---KFD------ADVSLDVIAMRTPGFS 436 (703)
Q Consensus 373 IaaT--N~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~---~--~---~l~------~dvdl~~lA~~t~G~s 436 (703)
|+|| |..-.|..+|++ |+ +++.+.....+.-..||.+... + . ++. .+--++.++..++|-.
T Consensus 254 IGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 254 IGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred EecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 9887 445578999999 66 5778888888888888877432 1 1 111 1222677888888866
Q ss_pred HHHHHHHHHHH-HHHHHHhC---CCCcCHHHHHHHHHH
Q 005304 437 GADLANLLNEA-AILAGRRG---KAAISSKEIDDSIDR 470 (703)
Q Consensus 437 gadL~~lv~eA-a~~A~r~~---~~~It~~di~~Al~~ 470 (703)
.+.|.. ++.+ .+...|.| +..++.+|+.+.+.+
T Consensus 331 R~aLN~-Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 331 RAALNA-LEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred HHHHHH-HHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 555533 3333 33334444 347888888888765
No 80
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.62 E-value=8.1e-15 Score=157.27 Aligned_cols=208 Identities=21% Similarity=0.318 Sum_probs=136.1
Q ss_pred ccccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeech
Q 005304 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (703)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s 298 (703)
.++.+++++.+|+|++|++++++.+...+.. ...|..+||+||||+|||++|++++++.+.++++++++
T Consensus 9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~ 77 (316)
T PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGS 77 (316)
T ss_pred CcceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccC
Confidence 4678899999999999999999988877751 23456777899999999999999999999999999987
Q ss_pred hHHHHHhhhhhhHHHHHHHHHH-hcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005304 299 EFVEMFVGVGASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (703)
Q Consensus 299 e~~~~~~G~~~~~ir~lF~~A~-~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (703)
+ . . .......+.+...... ...+.+|+|||+|.+. .......+..+ ++.. ..++.+|.+||
T Consensus 78 ~-~-~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----------~~~~~~~L~~~---le~~--~~~~~~Ilt~n 139 (316)
T PHA02544 78 D-C-R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----------LADAQRHLRSF---MEAY--SKNCSFIITAN 139 (316)
T ss_pred c-c-c-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----------CHHHHHHHHHH---HHhc--CCCceEEEEcC
Confidence 6 1 1 1111111222111111 1346899999999882 12233344433 4432 34567888999
Q ss_pred CcccccccccCCCccceeeeecCCChhhHHHHHHHHhc---------CCCCCccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 005304 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS---------NKKFDADVSLDVIAMRTPGFSGADLANLLNEAA 448 (703)
Q Consensus 378 ~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~---------~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa 448 (703)
.++.+++++++ ||. .+.++.|+.+++.++++..+. +..+.++ .+..++....| |++.+++...
T Consensus 140 ~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~-al~~l~~~~~~----d~r~~l~~l~ 211 (316)
T PHA02544 140 NKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMK-VLAALVKKNFP----DFRRTINELQ 211 (316)
T ss_pred ChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCC----CHHHHHHHHH
Confidence 99999999998 885 789999999999887664322 1222221 24556655443 3444444443
Q ss_pred HHHHHhCCCCcCHHHHHH
Q 005304 449 ILAGRRGKAAISSKEIDD 466 (703)
Q Consensus 449 ~~A~r~~~~~It~~di~~ 466 (703)
..+. ...++.+++..
T Consensus 212 ~~~~---~~~i~~~~l~~ 226 (316)
T PHA02544 212 RYAS---TGKIDAGILSE 226 (316)
T ss_pred HHHc---cCCCCHHHHHH
Confidence 3331 23566665443
No 81
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=9.8e-15 Score=168.85 Aligned_cols=205 Identities=18% Similarity=0.297 Sum_probs=149.2
Q ss_pred ccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------- 291 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p----------- 291 (703)
++.++.+|+||+|++.+++.|.+.+..- +.++.+||+||+|+|||++|+++|+.+++.
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~~-----------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDLG-----------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 4567789999999999999888777532 345578999999999999999999988763
Q ss_pred -------------EEEeechhHHHHHhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHH
Q 005304 292 -------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 354 (703)
Q Consensus 292 -------------fi~is~se~~~~~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l 354 (703)
++.++.+. ..+...+|++.+.+.. ....|+||||+|.+. ....
T Consensus 77 ~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------------~~a~ 136 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSF 136 (647)
T ss_pred HHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------------HHHH
Confidence 12222211 1233456777666532 234699999999992 3467
Q ss_pred HHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCC
Q 005304 355 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTP 433 (703)
Q Consensus 355 ~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~ 433 (703)
|.||..|+. ....+++|.+|+.++.|.+.+++ |+ ..+.|..++.++....|+..+....+. .+..+..|+..+.
T Consensus 137 NALLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~ 211 (647)
T PRK07994 137 NALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAAD 211 (647)
T ss_pred HHHHHHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 889988885 34567888888889999999998 86 688999999999999998877654433 2334677888877
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 434 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 434 G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
| +.++..+++..|... +...|+.+++...+
T Consensus 212 G-s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 212 G-SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred C-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 6 688888888776533 23456666665443
No 82
>PLN03025 replication factor C subunit; Provisional
Probab=99.62 E-value=1.1e-14 Score=157.10 Aligned_cols=204 Identities=20% Similarity=0.211 Sum_probs=137.0
Q ss_pred ccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCEEEe
Q 005304 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSI 295 (703)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~-----~pfi~i 295 (703)
|.+++++.+|+|++|++++++.|+.++..- ..| ++|||||||||||++|+++|+++. ..++.+
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~-----------~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARDG-----------NMP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHhcC-----------CCc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 567888999999999999999888765421 122 599999999999999999999973 246666
Q ss_pred echhHHHHHhhhhhhHHHHHHHHHHh-------cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCC
Q 005304 296 SGSEFVEMFVGVGASRVRDLFKKAKE-------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (703)
Q Consensus 296 s~se~~~~~~G~~~~~ir~lF~~A~~-------~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~ 368 (703)
+.++... ...+++..+.... ..+.|++|||+|.+. .. ..+.|+..|+.+..
T Consensus 71 n~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----------~~---aq~aL~~~lE~~~~-- 128 (319)
T PLN03025 71 NASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----------SG---AQQALRRTMEIYSN-- 128 (319)
T ss_pred ccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----------HH---HHHHHHHHHhcccC--
Confidence 6654321 1234443332211 235799999999982 22 23445555554332
Q ss_pred CeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHH
Q 005304 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEA 447 (703)
Q Consensus 369 ~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA 447 (703)
...+|.+||.++.+.+++++ |+ ..++|+.|+.++....++..+.+.++. ++..+..++..+.| +.+.+.+.++.+
T Consensus 129 ~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq~~ 204 (319)
T PLN03025 129 TTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQAT 204 (319)
T ss_pred CceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 34566678888888889988 76 478999999999999998887654433 23346777776654 445555555422
Q ss_pred HHHHHHhCCCCcCHHHHHHH
Q 005304 448 AILAGRRGKAAISSKEIDDS 467 (703)
Q Consensus 448 a~~A~r~~~~~It~~di~~A 467 (703)
+ .+...|+.+++.+.
T Consensus 205 ---~--~~~~~i~~~~v~~~ 219 (319)
T PLN03025 205 ---H--SGFGFVNQENVFKV 219 (319)
T ss_pred ---H--hcCCCCCHHHHHHH
Confidence 2 23456888777654
No 83
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.2e-14 Score=170.79 Aligned_cols=196 Identities=18% Similarity=0.209 Sum_probs=141.4
Q ss_pred cccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE-------EE
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------FS 294 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pf-------i~ 294 (703)
.++.++.+|+||+|++.+++.|++.+..- ++++.+||+||||||||++||++|+.+++.- ..
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~LknaI~~~-----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~ 75 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNALTQQ-----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV 75 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC
Confidence 35677889999999999999988777532 3466789999999999999999999987641 11
Q ss_pred e-echhHHHH-------Hh---hhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHh
Q 005304 295 I-SGSEFVEM-------FV---GVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (703)
Q Consensus 295 i-s~se~~~~-------~~---G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~ 359 (703)
+ +|-.+.+. +. ..+...+|++.+.+.. ....|+||||+|.+ ....+|.||.
T Consensus 76 C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L--------------T~eAqNALLK 141 (944)
T PRK14949 76 CSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML--------------SRSSFNALLK 141 (944)
T ss_pred chHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc--------------CHHHHHHHHH
Confidence 1 11111110 00 1223456666665532 23469999999999 2447788898
Q ss_pred hhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHH
Q 005304 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGA 438 (703)
Q Consensus 360 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sga 438 (703)
.|+.. ..++++|.+|+.+..|.+.+++ |+ .++.|..++.++..+.|+..+....+. .+..+..|+..+.| +.+
T Consensus 142 tLEEP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R 215 (944)
T PRK14949 142 TLEEP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMR 215 (944)
T ss_pred HHhcc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88853 4567788888888889889888 77 578999999999999888877654333 22336778888776 688
Q ss_pred HHHHHHHHHH
Q 005304 439 DLANLLNEAA 448 (703)
Q Consensus 439 dL~~lv~eAa 448 (703)
++.+++..+.
T Consensus 216 ~ALnLLdQal 225 (944)
T PRK14949 216 DALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHH
Confidence 8989988776
No 84
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.62 E-value=1.7e-14 Score=146.86 Aligned_cols=206 Identities=16% Similarity=0.203 Sum_probs=135.7
Q ss_pred CCCcccccccc--chHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechh
Q 005304 225 NTGVTFDDVAG--VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (703)
Q Consensus 225 ~~~~~f~dv~G--~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se 299 (703)
....+|+++++ .+.+.+.+++.+. ...+.+++|+||||||||++|++++.++ +.++++++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 9 PDDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CCchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 34567888873 3445555555442 1235589999999999999999998876 57899999988
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005304 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (703)
Q Consensus 300 ~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (703)
+.... .+++.... .+.+|+|||+|.+.. ..+....+..++..+. .....+|++++..+
T Consensus 77 ~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~---------~~~~~~~L~~~l~~~~---~~~~~iIits~~~~ 134 (226)
T TIGR03420 77 LAQAD--------PEVLEGLE--QADLVCLDDVEAIAG---------QPEWQEALFHLYNRVR---EAGGRLLIAGRAAP 134 (226)
T ss_pred HHHhH--------HHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHH---HcCCeEEEECCCCh
Confidence 76432 23333322 235899999999832 1122334444444332 12233444444444
Q ss_pred cccc---ccccCCCcc--ceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005304 380 DILD---SALLRPGRF--DRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGR 453 (703)
Q Consensus 380 ~~LD---~aLlRpgRf--dr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r 453 (703)
..++ +.+.+ |+ ..++.+++|+.+++..+++.++.+..+. ++..+..|+..++ .+.+++.++++++...+..
T Consensus 135 ~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~-gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 135 AQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGS-RDMGSLMALLDALDRASLA 211 (226)
T ss_pred HHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHH
Confidence 4332 66776 66 4689999999999999998876544332 2223677888654 5899999999998876655
Q ss_pred hCCCCcCHHHHHHHH
Q 005304 454 RGKAAISSKEIDDSI 468 (703)
Q Consensus 454 ~~~~~It~~di~~Al 468 (703)
.+ ..|+.+.+.+.+
T Consensus 212 ~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 212 AK-RKITIPFVKEVL 225 (226)
T ss_pred hC-CCCCHHHHHHHh
Confidence 44 579988877664
No 85
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=9.6e-15 Score=168.52 Aligned_cols=212 Identities=19% Similarity=0.275 Sum_probs=152.4
Q ss_pred cccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEE-------E
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF-------S 294 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi-------~ 294 (703)
.+++++.+|+||+|++.+++.|.+.+.. .++++++||+||+|+|||++|+++|+.++++-. .
T Consensus 7 arKYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~ 75 (709)
T PRK08691 7 ARKWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV 75 (709)
T ss_pred HHHhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc
Confidence 4567888999999999999988888753 245678999999999999999999998765311 0
Q ss_pred e-echhHHH----------HHhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHh
Q 005304 295 I-SGSEFVE----------MFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (703)
Q Consensus 295 i-s~se~~~----------~~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~ 359 (703)
+ +|..+.. .....+...++++++.+.. ....|+||||+|.+. ...+|.||.
T Consensus 76 C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------------~~A~NALLK 141 (709)
T PRK08691 76 CQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------------KSAFNAMLK 141 (709)
T ss_pred cHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------------HHHHHHHHH
Confidence 0 1111100 0012234567787776532 234699999999882 235678888
Q ss_pred hhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCc-cccHHHHHHhCCCCcHH
Q 005304 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGA 438 (703)
Q Consensus 360 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~lA~~t~G~sga 438 (703)
.|+.. ...+.+|.+||.+..+.+.+++ |+ ..+.|..++.++....|+..+.+.++.- +..+..|++.+.| +.+
T Consensus 142 tLEEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slR 215 (709)
T PRK08691 142 TLEEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMR 215 (709)
T ss_pred HHHhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHH
Confidence 88853 3457788888888888888887 77 4678889999999999988887655432 2337788887764 789
Q ss_pred HHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 439 DLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 439 dL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
++.++++.+... +...|+.+++...+
T Consensus 216 dAlnLLDqaia~----g~g~It~e~V~~lL 241 (709)
T PRK08691 216 DALSLLDQAIAL----GSGKVAENDVRQMI 241 (709)
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 999999887654 34568887777654
No 86
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.61 E-value=2.4e-14 Score=146.56 Aligned_cols=204 Identities=16% Similarity=0.189 Sum_probs=134.0
Q ss_pred ccCCCccccccccc--hHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeec
Q 005304 223 EPNTGVTFDDVAGV--DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 297 (703)
Q Consensus 223 ~~~~~~~f~dv~G~--de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~ 297 (703)
...++.+|+++.+. ..+...++++.. +...+.+++|+||+|||||+||+++++++ +.+++++++
T Consensus 10 ~~~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 10 GPPPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 34556789998733 344444444333 12234589999999999999999998865 779999999
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005304 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (703)
Q Consensus 298 se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (703)
.++.+.+ .. .....+|+|||+|.+. ...+..+..++..+ ..+...++|.+++
T Consensus 79 ~~~~~~~------------~~--~~~~~~liiDdi~~l~-----------~~~~~~L~~~~~~~---~~~~~~~vl~~~~ 130 (227)
T PRK08903 79 ASPLLAF------------DF--DPEAELYAVDDVERLD-----------DAQQIALFNLFNRV---RAHGQGALLVAGP 130 (227)
T ss_pred HHhHHHH------------hh--cccCCEEEEeChhhcC-----------chHHHHHHHHHHHH---HHcCCcEEEEeCC
Confidence 8765321 11 1235689999999872 12333444444433 2333433444444
Q ss_pred C-cc--cccccccCCCcc--ceeeeecCCChhhHHHHHHHHhcCCCCCc-cccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005304 378 R-AD--ILDSALLRPGRF--DRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (703)
Q Consensus 378 ~-p~--~LD~aLlRpgRf--dr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~lA~~t~G~sgadL~~lv~eAa~~A 451 (703)
. |. .+.+.|.+ || ...+++++|+.+++..+++.......+.- +.-+..|++..+| +.+++.++++.-...|
T Consensus 131 ~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 131 AAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYS 207 (227)
T ss_pred CCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 3 32 34566776 66 45889999999999889887665433332 2236778886664 8999999999866656
Q ss_pred HHhCCCCcCHHHHHHHHH
Q 005304 452 GRRGKAAISSKEIDDSID 469 (703)
Q Consensus 452 ~r~~~~~It~~di~~Al~ 469 (703)
...+ ..||...+.+++.
T Consensus 208 ~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 208 LEQK-RPVTLPLLREMLA 224 (227)
T ss_pred HHhC-CCCCHHHHHHHHh
Confidence 4444 6899888888764
No 87
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.61 E-value=6.1e-15 Score=165.83 Aligned_cols=300 Identities=16% Similarity=0.228 Sum_probs=181.5
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEeechhHH
Q 005304 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEFV 301 (703)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~se~~ 301 (703)
..+|++++--+.....+..+.....+|. ....+++|||++|+|||+|++++++++ +..++++++.+|.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~-------~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPG-------ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA 183 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcC-------cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 4689998744433333322222233332 123479999999999999999999854 5788999999998
Q ss_pred HHHhhhhhh---HHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 302 EMFVGVGAS---RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 302 ~~~~G~~~~---~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
..+...... .+..+.+.. ..+.+|+|||++.+.. .+..+..+..++..+. ...+.+|+++...
T Consensus 184 ~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~---------k~~~~e~lf~l~N~~~---~~~k~iIltsd~~ 249 (450)
T PRK14087 184 RKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSY---------KEKTNEIFFTIFNNFI---ENDKQLFFSSDKS 249 (450)
T ss_pred HHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccC---------CHHHHHHHHHHHHHHH---HcCCcEEEECCCC
Confidence 776543221 222222222 3457999999999842 2233334444444332 2333455554444
Q ss_pred cc---cccccccCCCccce--eeeecCCChhhHHHHHHHHhcCCCC---CccccHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 005304 379 AD---ILDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKF---DADVSLDVIAMRTPGFSGADLANLLNEAAIL 450 (703)
Q Consensus 379 p~---~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~IL~~~l~~~~l---~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~ 450 (703)
|+ .+++.|.+ ||.. .+.+..|+.++|.+|++.++...++ -++..++.|+..+.| +++.|.++++.+...
T Consensus 250 P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~ 326 (450)
T PRK14087 250 PELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFW 326 (450)
T ss_pred HHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHH
Confidence 54 35788888 8875 7889999999999999999876442 223337788888876 799999999999866
Q ss_pred HHHhC-CCCcCHHHHHHHHHHHHcCcCCcccccCCcchhhhHHHHHHHHHHhhcCCCCCcceeeeecCcccceEEEEccC
Q 005304 451 AGRRG-KAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPS 529 (703)
Q Consensus 451 A~r~~-~~~It~~di~~Al~~v~~g~~~~~~~~~~~~~~va~hEaGhAlv~~~~~~~~~v~kvti~prg~a~G~~~~~p~ 529 (703)
+.... ...||.+.+.+++..+... .+..+...++-++|+..+--. +..+.-..|.+..-..+++.+
T Consensus 327 a~~~~~~~~it~~~v~~~l~~~~~~----------~~~~~t~~~I~~~Va~~~~i~---~~dl~s~~R~~~i~~~Rqiam 393 (450)
T PRK14087 327 SQQNPEEKIITIEIVSDLFRDIPTS----------KLGILNVKKIKEVVSEKYGIS---VNAIDGKARSKSIVTARHIAM 393 (450)
T ss_pred HhcccCCCCCCHHHHHHHHhhcccc----------ccCCCCHHHHHHHHHHHcCCC---HHHHhCCCCCccccHHHHHHH
Confidence 65543 2679999999998764211 111245566667766554321 111111112111111111111
Q ss_pred CCCCcccHHHHHHHHHHhhchhhhhhhhcCCCCcc
Q 005304 530 DDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVT 564 (703)
Q Consensus 530 ~~~~~~t~~~l~~~i~~~lgGraAE~~~fg~~~~t 564 (703)
---..+|... +.+|...+|||-.-.++.+...+.
T Consensus 394 yL~r~~t~~s-l~~IG~~FggrdHsTV~~a~~ki~ 427 (450)
T PRK14087 394 YLTKEILNHT-LAQIGEEFGGRDHTTVINAERKIE 427 (450)
T ss_pred HHHHHHcCCC-HHHHHHHhCCCChHHHHHHHHHHH
Confidence 0000111111 367899999999999998765544
No 88
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.5e-14 Score=162.97 Aligned_cols=205 Identities=21% Similarity=0.306 Sum_probs=152.9
Q ss_pred ccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCC------------
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV------------ 290 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~------------ 290 (703)
.++++.+|+|++|++.+++.|.+.+.. .++|+++||+||||+|||++|+.+|..+++
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 356788999999999999988876642 245678999999999999999999987643
Q ss_pred ------------CEEEeechhHHHHHhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHH
Q 005304 291 ------------PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 354 (703)
Q Consensus 291 ------------pfi~is~se~~~~~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l 354 (703)
.++++++++ ..+...+|++.+.+.. ....|++|||+|.+. ...+
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------------~~A~ 133 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------------NSAF 133 (491)
T ss_pred HHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC--------------HHHH
Confidence 234444321 2244568888777643 234699999999982 2467
Q ss_pred HHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCC
Q 005304 355 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTP 433 (703)
Q Consensus 355 ~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~ 433 (703)
|.||..|+.. ...+++|.+|+.++.+.+.+++ |+ ..+.+..++.++..+.++..+.+.+.. ++..+..|++.+.
T Consensus 134 NaLLK~LEeP--p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~ 208 (491)
T PRK14964 134 NALLKTLEEP--APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSS 208 (491)
T ss_pred HHHHHHHhCC--CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 8888888854 4467888888888899999988 77 468999999999999988887665443 2334777888886
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 434 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 434 G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
| +.+++.++++.+...+ ...||.+++.+.+
T Consensus 209 G-slR~alslLdqli~y~----~~~It~e~V~~ll 238 (491)
T PRK14964 209 G-SMRNALFLLEQAAIYS----NNKISEKSVRDLL 238 (491)
T ss_pred C-CHHHHHHHHHHHHHhc----CCCCCHHHHHHHH
Confidence 5 7889989888877654 2468888887653
No 89
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=2.3e-14 Score=162.96 Aligned_cols=204 Identities=22% Similarity=0.315 Sum_probs=148.5
Q ss_pred ccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------- 291 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p----------- 291 (703)
++.++.+|+||+|++++++.|...+..- +.|+.+|||||||||||++|+++|+.+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~-----------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQG-----------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 5678889999999999999998887642 345678999999999999999999987541
Q ss_pred ------------EEEeechhHHHHHhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHH
Q 005304 292 ------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLN 355 (703)
Q Consensus 292 ------------fi~is~se~~~~~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~ 355 (703)
++.++.+. ..+...++++.+.+.. ..+.||+|||+|.+. ...++
T Consensus 75 sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------~~a~n 134 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------KSAFN 134 (504)
T ss_pred hhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------HHHHH
Confidence 33333321 1233456666555432 345799999999872 34577
Q ss_pred HHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCc-cccHHHHHHhCCC
Q 005304 356 QLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPG 434 (703)
Q Consensus 356 ~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~lA~~t~G 434 (703)
.|+..++.. ..++++|.+||.++.+.+.+.+ |+. .+.|..|+.++....++..+.+.+... +..+..|+..+.|
T Consensus 135 aLLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 135 ALLKTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred HHHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 888888753 3457777788889999999988 764 789999999999999998877655432 2336778877765
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 435 FSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 435 ~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
+.+++.++++.+... ...||.+++.+.+
T Consensus 210 -dlR~aln~Lekl~~~-----~~~It~~~V~~~l 237 (504)
T PRK14963 210 -AMRDAESLLERLLAL-----GTPVTRKQVEEAL 237 (504)
T ss_pred -CHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 677777777776432 2368888877664
No 90
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.60 E-value=4.7e-14 Score=158.28 Aligned_cols=230 Identities=17% Similarity=0.235 Sum_probs=144.6
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHH
Q 005304 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 301 (703)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~ 301 (703)
.+..||++++--+........+.+....+.. .......+++||||||+|||+|++++++++ +..++++++.+|.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~---~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~ 181 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQ---GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT 181 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccc---ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH
Confidence 4667999987333332222222222222110 011123479999999999999999999875 7899999998887
Q ss_pred HHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcc-
Q 005304 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD- 380 (703)
Q Consensus 302 ~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~- 380 (703)
..+.......-.+.|.... ..+++|+||||+.+.++. ..++.+..+++.+- .....+|+++++.|.
T Consensus 182 ~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~---------~~qeelf~l~N~l~---~~~k~IIlts~~~p~~ 248 (445)
T PRK12422 182 EHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG---------ATQEEFFHTFNSLH---TEGKLIVISSTCAPQD 248 (445)
T ss_pred HHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh---------hhHHHHHHHHHHHH---HCCCcEEEecCCCHHH
Confidence 6554332211122344432 346799999999984321 12222223332221 123445555555554
Q ss_pred --cccccccCCCccc--eeeeecCCChhhHHHHHHHHhcCCCCCcc-ccHHHHHHhCCCCcHHHHHHHHHHHHHHH-HHh
Q 005304 381 --ILDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSGADLANLLNEAAILA-GRR 454 (703)
Q Consensus 381 --~LD~aLlRpgRfd--r~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~lA~~t~G~sgadL~~lv~eAa~~A-~r~ 454 (703)
.+++.|.+ ||. ..+.+.+|+.++|.+|++..+....+.-+ ..++.++....+ +.++|.+.++..+... ..+
T Consensus 249 l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~ 325 (445)
T PRK12422 249 LKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKK 325 (445)
T ss_pred HhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHH
Confidence 46788988 896 58899999999999999998876554322 225667777764 6888888888775322 211
Q ss_pred -CCCCcCHHHHHHHHHHHHc
Q 005304 455 -GKAAISSKEIDDSIDRIVA 473 (703)
Q Consensus 455 -~~~~It~~di~~Al~~v~~ 473 (703)
....||.+++++++.....
T Consensus 326 ~~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 326 LSHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred hhCCCCCHHHHHHHHHHhhh
Confidence 2356999999999987643
No 91
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.60 E-value=7.3e-15 Score=176.70 Aligned_cols=167 Identities=23% Similarity=0.373 Sum_probs=127.3
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEe
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~pfi~i 295 (703)
.+-++++++|+++...++.+++. ... ..+++|+||||||||++|+++|..+ +.+++.+
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~---r~~---------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQ---RRT---------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHh---cCC---------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 45579999999986555444442 221 2269999999999999999999987 7899999
Q ss_pred echhHH--HHHhhhhhhHHHHHHHHHHh-cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEE
Q 005304 296 SGSEFV--EMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (703)
Q Consensus 296 s~se~~--~~~~G~~~~~ir~lF~~A~~-~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViV 372 (703)
+.+.+. .+|.|..+.+++.+|+.+.. ..|+||||||+|.+.+.+++ .++. . ..+.|...+ .++.+.+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~--~~~~-d---~~~~lkp~l----~~g~l~~ 310 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA--DGAM-D---AGNMLKPAL----ARGELHC 310 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC--ccch-h---HHHHhcchh----hcCCCeE
Confidence 988876 45788899999999998644 56899999999999765432 1111 1 223333222 3678999
Q ss_pred EEecCCcc-----cccccccCCCccceeeeecCCChhhHHHHHHHHhcCC
Q 005304 373 IAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK 417 (703)
Q Consensus 373 IaaTN~p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~ 417 (703)
|+||+..+ .+|+++.| ||+ .|.++.|+.+++..|++......
T Consensus 311 IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 99999877 38999999 997 68899999999999998765443
No 92
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2e-14 Score=166.00 Aligned_cols=213 Identities=17% Similarity=0.231 Sum_probs=150.3
Q ss_pred ccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 005304 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (703)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p--------- 291 (703)
..+++++.+|+||+|++.+++.|.+.+..- +.|+.+||+||+|||||++|+++|+.+++.
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~ 74 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT 74 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC
Confidence 345678889999999999999888877533 345578999999999999999999988651
Q ss_pred ---EEE-eechhHH--------HH--HhhhhhhHHHHHHHHHHhc----CCeEEEEcCcccccccCCCCCCCCChHHHHH
Q 005304 292 ---FFS-ISGSEFV--------EM--FVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (703)
Q Consensus 292 ---fi~-is~se~~--------~~--~~G~~~~~ir~lF~~A~~~----aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~ 353 (703)
.-. -+|..+. +. ....+.+.+|++.+.+... ...|++|||+|.+. ...
T Consensus 75 ~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls--------------~~a 140 (618)
T PRK14951 75 ATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT--------------NTA 140 (618)
T ss_pred CCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------------HHH
Confidence 000 0111111 00 0112345677777765422 23599999999982 235
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCc-cccHHHHHHhC
Q 005304 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRT 432 (703)
Q Consensus 354 l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~lA~~t 432 (703)
.|.||..++. ....+++|.+|+.++.+.+.+++ |+ .+++|..++.++..+.++..+.+.++.. +..+..|++.+
T Consensus 141 ~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 7788888875 34567778788888888888888 76 5789999999999999988776554432 23377888887
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
.| +.+++.+++..+... +...|+.+++.+.+
T Consensus 216 ~G-slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 216 RG-SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 76 788888888776644 34567777666543
No 93
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.59 E-value=2.2e-14 Score=172.52 Aligned_cols=163 Identities=24% Similarity=0.357 Sum_probs=126.8
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEe
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~pfi~i 295 (703)
..-.++.++|.++..+++.+++.. +.+.+++|+||||||||++|+++|.+. +.+++.+
T Consensus 174 ~~~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 174 IDGNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred HcCCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 344689999999998887776532 234489999999999999999999976 4789999
Q ss_pred echhHH--HHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEE
Q 005304 296 SGSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (703)
Q Consensus 296 s~se~~--~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVI 373 (703)
+.+.+. ..|.|+.+.+++.+|+.++...++||||||||.+.+..+.. +... ..+.|...+. ++.+.+|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---g~~~---~a~lLkp~l~----rg~l~~I 311 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE---GAID---AANILKPALA----RGELQCI 311 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC---Cccc---HHHHhHHHHh----CCCcEEE
Confidence 998887 46788899999999999988889999999999997654321 1111 2222322222 5679999
Q ss_pred EecCCcc-----cccccccCCCccceeeeecCCChhhHHHHHHHH
Q 005304 374 AATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH 413 (703)
Q Consensus 374 aaTN~p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~ 413 (703)
++|+..+ ..|+++.+ ||. .|.++.|+.++...|++..
T Consensus 312 gaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGL 353 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHH
Confidence 9999765 47899999 996 5799999999998888753
No 94
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=3.3e-14 Score=163.80 Aligned_cols=204 Identities=22% Similarity=0.317 Sum_probs=151.2
Q ss_pred ccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------- 291 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p----------- 291 (703)
.+.++.+|+||+|++++++.|++.+..- +.++.+||+||+|||||++|+.+|+.+.++
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 5667889999999999999998887642 345679999999999999999999987542
Q ss_pred -------------EEEeechhHHHHHhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHH
Q 005304 292 -------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 354 (703)
Q Consensus 292 -------------fi~is~se~~~~~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l 354 (703)
++.++++ .+.+...++++.+.+.. ....|++|||+|.+. ...+
T Consensus 77 ~~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------------~~a~ 136 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------------TGAF 136 (559)
T ss_pred HHHHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHH
Confidence 2222221 12345567888777653 224699999999982 2367
Q ss_pred HHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCc-cccHHHHHHhCC
Q 005304 355 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTP 433 (703)
Q Consensus 355 ~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~lA~~t~ 433 (703)
|.||..++.. ...+++|.+|+.++.+.+.+++ |+. .+.|..|+.++....++..+.+.++.- +..+..++..+.
T Consensus 137 naLLKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~ 211 (559)
T PRK05563 137 NALLKTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAE 211 (559)
T ss_pred HHHHHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 8888888753 4567888788889999999988 774 678999999999999988876655432 233677788777
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 005304 434 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (703)
Q Consensus 434 G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~A 467 (703)
| +.+++.+++..+...+ ...|+.+++.+.
T Consensus 212 G-~~R~al~~Ldq~~~~~----~~~It~~~V~~v 240 (559)
T PRK05563 212 G-GMRDALSILDQAISFG----DGKVTYEDALEV 240 (559)
T ss_pred C-CHHHHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 6 7888888888776542 346887776654
No 95
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.59 E-value=2.7e-14 Score=157.68 Aligned_cols=185 Identities=19% Similarity=0.316 Sum_probs=131.0
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE----------------
Q 005304 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF---------------- 292 (703)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pf---------------- 292 (703)
.|++|+|++.+++.|++.+..-+. .+...+.+.|+++||+||||+|||++|+++|..+.+.-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 589999999999999999976443 23345666889999999999999999999999765431
Q ss_pred -------EEeechhHHHHHhhhhhhHHHHHHHHHHhc----CCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhh
Q 005304 293 -------FSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 361 (703)
Q Consensus 293 -------i~is~se~~~~~~G~~~~~ir~lF~~A~~~----aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~l 361 (703)
..+.... ...+...+|++++.+... ...|+||||+|.+. ....|.||..|
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~--------------~~aanaLLk~L 141 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT--------------ERAANALLKAV 141 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC--------------HHHHHHHHHHh
Confidence 1111110 112345688888887542 34699999999992 22457788888
Q ss_pred cCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHH
Q 005304 362 DGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLA 441 (703)
Q Consensus 362 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~ 441 (703)
+.. ..++++|.+|+.++.+.|.+++ |+ ..+.|++|+.++..+++.... ... +.....++..+.|..+..+.
T Consensus 142 Eep--~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 142 EEP--PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARR 212 (394)
T ss_pred hcC--CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHH
Confidence 754 3345555555558999999999 77 589999999998888876432 222 23356788888887666554
Q ss_pred HH
Q 005304 442 NL 443 (703)
Q Consensus 442 ~l 443 (703)
-+
T Consensus 213 l~ 214 (394)
T PRK07940 213 LA 214 (394)
T ss_pred Hh
Confidence 43
No 96
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.59 E-value=4.1e-14 Score=166.50 Aligned_cols=212 Identities=24% Similarity=0.275 Sum_probs=143.4
Q ss_pred cccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
.++.++.+|+|++|+++...+...+...+... + ..+++||||||||||++|+++|+..+.+|+.+++...
T Consensus 19 aek~RP~tldd~vGQe~ii~~~~~L~~~i~~~--------~-~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~- 88 (725)
T PRK13341 19 ADRLRPRTLEEFVGQDHILGEGRLLRRAIKAD--------R-VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA- 88 (725)
T ss_pred HHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcC--------C-CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-
Confidence 34566789999999999886422232222221 1 2369999999999999999999999999999887531
Q ss_pred HHHhhhhhhHHHHHHHHHH-----hcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 005304 302 EMFVGVGASRVRDLFKKAK-----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (703)
Q Consensus 302 ~~~~G~~~~~ir~lF~~A~-----~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaT 376 (703)
+.+.+++.++.+. .....+|||||||.+. .. ..+.|+..++ +..+++|++|
T Consensus 89 ------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----------~~---qQdaLL~~lE----~g~IiLI~aT 144 (725)
T PRK13341 89 ------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFN-----------KA---QQDALLPWVE----NGTITLIGAT 144 (725)
T ss_pred ------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----------HH---HHHHHHHHhc----CceEEEEEec
Confidence 1123444444432 1245799999999982 12 2344555444 3457788766
Q ss_pred CC--cccccccccCCCccceeeeecCCChhhHHHHHHHHhc-------CCCCC-ccccHHHHHHhCCCCcHHHHHHHHHH
Q 005304 377 NR--ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS-------NKKFD-ADVSLDVIAMRTPGFSGADLANLLNE 446 (703)
Q Consensus 377 N~--p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~-------~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~e 446 (703)
+. ...+++++++ |. ..+.+++++.+++..+++..+. ...+. ++..++.|+....| +.+++.++++.
T Consensus 145 Tenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~ 220 (725)
T PRK13341 145 TENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALEL 220 (725)
T ss_pred CCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 43 3568899998 64 4689999999999999998775 21121 22236778887754 68888888888
Q ss_pred HHHHHHHhC--CCCcCHHHHHHHHHHH
Q 005304 447 AAILAGRRG--KAAISSKEIDDSIDRI 471 (703)
Q Consensus 447 Aa~~A~r~~--~~~It~~di~~Al~~v 471 (703)
+...+...+ ...|+.+++++++.+.
T Consensus 221 a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 221 AVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HHHhcccCCCCceeccHHHHHHHHHHh
Confidence 775442222 2247888888887663
No 97
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.59 E-value=3.8e-14 Score=154.22 Aligned_cols=208 Identities=22% Similarity=0.348 Sum_probs=149.9
Q ss_pred ccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 005304 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (703)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p--------- 291 (703)
+.++.++.+|+|++|++++++.+.+.+.. .+.|+.+|||||||+|||++|+++|+.+.++
T Consensus 4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~ 72 (355)
T TIGR02397 4 LARKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCN 72 (355)
T ss_pred HHHHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 44567788999999999999988887742 2345689999999999999999999887532
Q ss_pred ---------------EEEeechhHHHHHhhhhhhHHHHHHHHHHhc----CCeEEEEcCcccccccCCCCCCCCChHHHH
Q 005304 292 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (703)
Q Consensus 292 ---------------fi~is~se~~~~~~G~~~~~ir~lF~~A~~~----aP~ILfIDEID~L~~~r~~~~~~~~~e~~~ 352 (703)
++.++... ..+...++++++.+... ...|++|||+|.+. ..
T Consensus 73 ~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------------~~ 132 (355)
T TIGR02397 73 ECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------------KS 132 (355)
T ss_pred CCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------------HH
Confidence 22222211 12334567777776432 23599999999882 23
Q ss_pred HHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCc-cccHHHHHHh
Q 005304 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMR 431 (703)
Q Consensus 353 ~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~lA~~ 431 (703)
..+.|+..++.. ..++++|.+|+.++.+.+.+++ |+ ..+++++|+.++..++++.++.+.+..- +..+..++..
T Consensus 133 ~~~~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~ 207 (355)
T TIGR02397 133 AFNALLKTLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARA 207 (355)
T ss_pred HHHHHHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 567788888753 3467777788888888888888 77 4789999999999999998887655432 2335667777
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 005304 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (703)
Q Consensus 432 t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~ 469 (703)
+.| +++.+.+.++.+...+ ...|+.+++++++.
T Consensus 208 ~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 208 ADG-SLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred cCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 765 6777777777766543 24599999987764
No 98
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=3.1e-14 Score=162.98 Aligned_cols=212 Identities=18% Similarity=0.237 Sum_probs=149.2
Q ss_pred cccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE-------EE
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------FS 294 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pf-------i~ 294 (703)
.++.++.+|+||+|++++++.|...+.. .+.++.+||+||||+|||++|+++|+.+++.. -.
T Consensus 7 ~~k~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~ 75 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGV 75 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 3456778999999999999988887753 23456789999999999999999999886531 11
Q ss_pred e-echhHH-----H-----HHhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHh
Q 005304 295 I-SGSEFV-----E-----MFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (703)
Q Consensus 295 i-s~se~~-----~-----~~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~ 359 (703)
+ +|..+. + .-...+...+|++.+.+.. ....|++|||+|.+. ....|.||.
T Consensus 76 C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------------~~a~naLLK 141 (527)
T PRK14969 76 CSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------------KSAFNAMLK 141 (527)
T ss_pred CHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------------HHHHHHHHH
Confidence 0 011110 0 0001234567777777643 223599999999982 245788888
Q ss_pred hhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCc-cccHHHHHHhCCCCcHH
Q 005304 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGA 438 (703)
Q Consensus 360 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~lA~~t~G~sga 438 (703)
.++.. ...+++|.+|+.++.+.+.+++ |+ ..++|..++.++....+...+.+.+... +..+..++..+.| +.+
T Consensus 142 ~LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr 215 (527)
T PRK14969 142 TLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMR 215 (527)
T ss_pred HHhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88853 4567778788888888878887 76 5789999999998888887775544432 2336677777764 788
Q ss_pred HHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 439 DLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 439 dL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
++.++++.+... +...|+.+++.+.+
T Consensus 216 ~al~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 216 DALSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 888888887544 45578887776654
No 99
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.57 E-value=1.7e-13 Score=141.59 Aligned_cols=207 Identities=13% Similarity=0.139 Sum_probs=133.5
Q ss_pred cCCCccccccc-c-chHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeech
Q 005304 224 PNTGVTFDDVA-G-VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (703)
Q Consensus 224 ~~~~~~f~dv~-G-~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s 298 (703)
-.+..+|++++ | ...+...+.++.. .+ .+.+++||||||||||+|++++++++ +..+.+++..
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~~---~~---------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNALR---QE---------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHHh---CC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 44566899988 4 3334444443332 21 12379999999999999999998865 4567777776
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCC-eEEEEecC
Q 005304 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG-IIVIAATN 377 (703)
Q Consensus 299 e~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~-ViVIaaTN 377 (703)
++... ..++++.... ..+|+|||++.+.. ....+..+..++..+- .+.+ -+++++++
T Consensus 83 ~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~---------~~~~~~~lf~l~n~~~---e~g~~~li~ts~~ 140 (235)
T PRK08084 83 KRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAG---------DELWEMAIFDLYNRIL---ESGRTRLLITGDR 140 (235)
T ss_pred HHhhh--------hHHHHHHhhh--CCEEEEeChhhhcC---------CHHHHHHHHHHHHHHH---HcCCCeEEEeCCC
Confidence 64321 1122222222 25899999999832 2334444444444332 1233 35555556
Q ss_pred Cccc---ccccccCCCccc--eeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005304 378 RADI---LDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (703)
Q Consensus 378 ~p~~---LD~aLlRpgRfd--r~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A 451 (703)
.|.. +.|.|++ |+. .++.+..|+.+++.++++.++....+. ++.-++.|+++..| +.+.+.++++.....+
T Consensus 141 ~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~ 217 (235)
T PRK08084 141 PPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRAS 217 (235)
T ss_pred ChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence 6655 5789998 886 588999999999999999866554433 22237788888875 7899999998864344
Q ss_pred HHhCCCCcCHHHHHHHH
Q 005304 452 GRRGKAAISSKEIDDSI 468 (703)
Q Consensus 452 ~r~~~~~It~~di~~Al 468 (703)
.. ....||.+.+.+++
T Consensus 218 l~-~~~~it~~~~k~~l 233 (235)
T PRK08084 218 IT-AQRKLTIPFVKEIL 233 (235)
T ss_pred Hh-cCCCCCHHHHHHHH
Confidence 33 34569988888765
No 100
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.57 E-value=6.7e-14 Score=155.36 Aligned_cols=180 Identities=27% Similarity=0.360 Sum_probs=115.8
Q ss_pred cccc-cccchHHHHHHHHHHHH----hcCchhhhhccCC-CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 229 TFDD-VAGVDEAKQDFMEVVEF----LKKPERFTAIGAR-IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 229 ~f~d-v~G~de~k~~L~e~v~~----l~~p~~~~~lg~~-~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
.+++ |+|++++|+.+...+.. +....... -... ...++||+||||||||++|+++|..++.||+.++++.+.+
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~-~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~ 146 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKD-DDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTE 146 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccc-cccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhccc
Confidence 3443 89999999999776632 22111000 0111 2358999999999999999999999999999999988764
Q ss_pred -HHhhhhhhH-HHHHHHHH----HhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc-----------
Q 005304 303 -MFVGVGASR-VRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE----------- 365 (703)
Q Consensus 303 -~~~G~~~~~-ir~lF~~A----~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~----------- 365 (703)
.|+|..... +..++..+ ....++||||||||.+..++.......+-..+.+++.||..||+-.
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 567765443 34444332 2346789999999999766432211111222346667777776531
Q ss_pred CCCCeEEEEecCCcc----------------------------------------------------cccccccCCCccc
Q 005304 366 GNTGIIVIAATNRAD----------------------------------------------------ILDSALLRPGRFD 393 (703)
Q Consensus 366 ~~~~ViVIaaTN~p~----------------------------------------------------~LD~aLlRpgRfd 393 (703)
.....++|.|+|-.. .+.|+++ ||+|
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld 304 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLP 304 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCC
Confidence 111345555554300 0233444 3899
Q ss_pred eeeeecCCChhhHHHHHH
Q 005304 394 RQVTVDVPDIRGRTEILK 411 (703)
Q Consensus 394 r~I~i~~Pd~~eR~~IL~ 411 (703)
..+.|...+.+...+|+.
T Consensus 305 ~iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 305 VVATLEELDEEALVRILT 322 (412)
T ss_pred eeeecCCCCHHHHHHHHH
Confidence 999999999999988886
No 101
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=7.3e-14 Score=159.44 Aligned_cols=206 Identities=20% Similarity=0.301 Sum_probs=146.0
Q ss_pred cccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----------
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV----------- 290 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~----------- 290 (703)
.++.++.+|+|++|++.+++.|...+..- +.+..+||+||||+|||++|+++|+.+.+
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNK 75 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 34667889999999999999888777532 34567999999999999999999998764
Q ss_pred -------------CEEEeechhHHHHHhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHH
Q 005304 291 -------------PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (703)
Q Consensus 291 -------------pfi~is~se~~~~~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~ 353 (703)
.++.++.. ...+...++++.+.+.. ....|++|||+|.+. ...
T Consensus 76 C~sC~~i~~~~~~dlieidaa------s~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------------~~a 135 (546)
T PRK14957 76 CENCVAINNNSFIDLIEIDAA------SRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------------KQS 135 (546)
T ss_pred cHHHHHHhcCCCCceEEeecc------cccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------------HHH
Confidence 12222211 11223445666665532 234699999999982 246
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhC
Q 005304 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (703)
Q Consensus 354 l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t 432 (703)
.+.||..|+.. ...+++|.+|+.+..+.+.+++ |+ ..++|..++.++....++..+.+.+.. .+..+..++..+
T Consensus 136 ~naLLK~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s 210 (546)
T PRK14957 136 FNALLKTLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHA 210 (546)
T ss_pred HHHHHHHHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 67888888753 3456777777778888888888 77 688999999999888888776654433 233366777777
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
. .+.+++.++++.+.... + ..|+.+++.+++
T Consensus 211 ~-GdlR~alnlLek~i~~~---~-~~It~~~V~~~l 241 (546)
T PRK14957 211 K-GSLRDALSLLDQAISFC---G-GELKQAQIKQML 241 (546)
T ss_pred C-CCHHHHHHHHHHHHHhc---c-CCCCHHHHHHHH
Confidence 5 47888888888776543 2 468887777654
No 102
>PRK08727 hypothetical protein; Validated
Probab=99.56 E-value=1.6e-13 Score=141.69 Aligned_cols=211 Identities=18% Similarity=0.214 Sum_probs=134.6
Q ss_pred ccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechh
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se 299 (703)
...+..+|+++++.+... +..+...... .....++|+||+|||||+|++++++++ +..+.+++..+
T Consensus 11 ~~~~~~~f~~f~~~~~n~--~~~~~~~~~~---------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 11 RYPSDQRFDSYIAAPDGL--LAQLQALAAG---------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CCCCcCChhhccCCcHHH--HHHHHHHHhc---------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 345667999988766532 2111111111 122369999999999999999997654 67888888766
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005304 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (703)
Q Consensus 300 ~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (703)
+... +.+.++... ...+|+|||+|.+..+ ...+..+..++.... .+..-+|+++.+.|
T Consensus 80 ~~~~--------~~~~~~~l~--~~dlLiIDDi~~l~~~---------~~~~~~lf~l~n~~~---~~~~~vI~ts~~~p 137 (233)
T PRK08727 80 AAGR--------LRDALEALE--GRSLVALDGLESIAGQ---------REDEVALFDFHNRAR---AAGITLLYTARQMP 137 (233)
T ss_pred hhhh--------HHHHHHHHh--cCCEEEEeCcccccCC---------hHHHHHHHHHHHHHH---HcCCeEEEECCCCh
Confidence 5432 233444433 3469999999998422 223344445554432 22222444444456
Q ss_pred ccc---cccccCCCccc--eeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005304 380 DIL---DSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGR 453 (703)
Q Consensus 380 ~~L---D~aLlRpgRfd--r~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r 453 (703)
..+ ++.|.+ ||. ..+.++.|+.+++.+|++.++....+. ++..+..|+.++.| +.+.+.++++..-..+..
T Consensus 138 ~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~ 214 (233)
T PRK08727 138 DGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLA 214 (233)
T ss_pred hhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHH
Confidence 654 688988 874 478999999999999999877544433 22236788888774 566676777766554544
Q ss_pred hCCCCcCHHHHHHHHHH
Q 005304 454 RGKAAISSKEIDDSIDR 470 (703)
Q Consensus 454 ~~~~~It~~di~~Al~~ 470 (703)
.+ ..||...+.+.+..
T Consensus 215 ~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 215 AK-RRVTVPFLRRVLEE 230 (233)
T ss_pred hC-CCCCHHHHHHHHhh
Confidence 44 47999888887753
No 103
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=5.9e-14 Score=161.29 Aligned_cols=206 Identities=20% Similarity=0.269 Sum_probs=146.7
Q ss_pred cccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 291 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p---------- 291 (703)
.+++++.+|+||+|++.+++.|.+.+..- +.+..+||+||||||||++|+++|+.+.+.
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~ 75 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNT 75 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcc
Confidence 45678889999999999999888887532 334589999999999999999999988753
Q ss_pred --------------EEEeechhHHHHHhhhhhhHHHHHHHHHH----hcCCeEEEEcCcccccccCCCCCCCCChHHHHH
Q 005304 292 --------------FFSISGSEFVEMFVGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (703)
Q Consensus 292 --------------fi~is~se~~~~~~G~~~~~ir~lF~~A~----~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~ 353 (703)
++.++++. ..+...++.+.+.+. .....||||||+|.+. ...
T Consensus 76 C~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------------~~a 135 (624)
T PRK14959 76 CEQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------------REA 135 (624)
T ss_pred cHHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------------HHH
Confidence 33333211 112234454433332 2334699999999992 235
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhC
Q 005304 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (703)
Q Consensus 354 l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t 432 (703)
++.|+..|+.. ...+++|.+||.++.+.+.+++ |+ ..+.|+.++.++...+|+..+...... ++..+..++..+
T Consensus 136 ~naLLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s 210 (624)
T PRK14959 136 FNALLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRA 210 (624)
T ss_pred HHHHHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 67888888753 3468888888888888888888 77 478999999999999998877654432 233367778777
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
.| +.+++.++++.++ ..+...|+.+++.+++
T Consensus 211 ~G-dlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 211 AG-SVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred CC-CHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 65 5677777777653 2355589998888776
No 104
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.56 E-value=5.5e-14 Score=169.57 Aligned_cols=202 Identities=22% Similarity=0.322 Sum_probs=143.4
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEe
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~pfi~i 295 (703)
.+-.++.++|+++...++.+++ ... ...+++|+||||||||++|+++|... +.+++.+
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l---~r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVL---SRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHH---hcC---------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 4557899999999755555444 221 12378999999999999999999875 6789999
Q ss_pred echhHH--HHHhhhhhhHHHHHHHHHHh-cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEE
Q 005304 296 SGSEFV--EMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (703)
Q Consensus 296 s~se~~--~~~~G~~~~~ir~lF~~A~~-~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViV 372 (703)
+.+.+. ..|.|..+.+++.+|+.+.. ..|+||||||||.+.+.+... +. ....+.|... -.+..+.+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~---~~---~d~~~~Lk~~----l~~g~i~~ 305 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE---GA---MDAGNMLKPA----LARGELHC 305 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc---ch---hHHHHHhchh----hhcCceEE
Confidence 888876 46788889999999999865 458999999999997543221 11 1223333322 23667999
Q ss_pred EEecCCcc-----cccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCc-----cccHHHHHHhCCCC-----cH
Q 005304 373 IAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-----DVSLDVIAMRTPGF-----SG 437 (703)
Q Consensus 373 IaaTN~p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-----dvdl~~lA~~t~G~-----sg 437 (703)
|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.......... +..+...+..+.+| -|
T Consensus 306 IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lP 382 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLP 382 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCc
Confidence 99999865 47999999 996 589999999999999987755544322 22344445554443 23
Q ss_pred HHHHHHHHHHHHHHH
Q 005304 438 ADLANLLNEAAILAG 452 (703)
Q Consensus 438 adL~~lv~eAa~~A~ 452 (703)
.---.++++|+..+.
T Consensus 383 dkAidlld~a~a~~~ 397 (852)
T TIGR03346 383 DKAIDLIDEAAARIR 397 (852)
T ss_pred hHHHHHHHHHHHHHH
Confidence 445567777776553
No 105
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.55 E-value=1.6e-13 Score=150.42 Aligned_cols=228 Identities=22% Similarity=0.299 Sum_probs=167.1
Q ss_pred cCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEeech
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGS 298 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~s 298 (703)
-.+..+|++++.-+.......-.......|.. .-..++||||+|.|||+|++|+++++ +..+++++..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~-------~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENPGG-------AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhccCC-------cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 45678999998877766655555555444432 22369999999999999999998876 3469999999
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 299 e~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
+|...++......-.+-|++-. .-.+++||+|+.+.++... ..+.-.++|.+.. +.+-+|+.+...
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~-----qeefFh~FN~l~~-------~~kqIvltsdr~ 218 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKERT-----QEEFFHTFNALLE-------NGKQIVLTSDRP 218 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChhH-----HHHHHHHHHHHHh-------cCCEEEEEcCCC
Confidence 9998887765555555677665 3468999999999644321 2333344444443 445677777666
Q ss_pred ccc---ccccccCCCccce--eeeecCCChhhHHHHHHHHhcCCCCCcc-ccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 005304 379 ADI---LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSGADLANLLNEAAILAG 452 (703)
Q Consensus 379 p~~---LD~aLlRpgRfdr--~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~lA~~t~G~sgadL~~lv~eAa~~A~ 452 (703)
|.. +++.|.+ ||.+ .+.+.+||.+.|..||+..+....+.-+ .-...++.+.. -+.++|+.+++.....|.
T Consensus 219 P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~ 295 (408)
T COG0593 219 PKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFAL 295 (408)
T ss_pred chhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHH
Confidence 765 4588888 9987 7899999999999999997766554432 22566777765 489999999999998887
Q ss_pred HhCCCCcCHHHHHHHHHHHHcCcC
Q 005304 453 RRGKAAISSKEIDDSIDRIVAGME 476 (703)
Q Consensus 453 r~~~~~It~~di~~Al~~v~~g~~ 476 (703)
..++ .||.+.+.+++.......+
T Consensus 296 ~~~~-~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 296 FTKR-AITIDLVKEILKDLLRAGE 318 (408)
T ss_pred hcCc-cCcHHHHHHHHHHhhcccc
Confidence 7765 8999999999987765443
No 106
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=9.5e-14 Score=165.27 Aligned_cols=212 Identities=19% Similarity=0.181 Sum_probs=147.2
Q ss_pred ccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEE-----Eeec
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF-----SISG 297 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi-----~is~ 297 (703)
+++++.+|+||+|++.+++.|+..+.. .++++.+||+||+|||||++|++||+.+.+.-- .-.|
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 577888999999999999988887753 234567999999999999999999999865210 0011
Q ss_pred hhHHHHH------------hh---hhhhHHHHHHHHHH----hcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHH
Q 005304 298 SEFVEMF------------VG---VGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (703)
Q Consensus 298 se~~~~~------------~G---~~~~~ir~lF~~A~----~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL 358 (703)
....... .+ .+...+|++.+.+. .....|+||||+|.|. ....|.||
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--------------~~a~NaLL 141 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT--------------PQGFNALL 141 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC--------------HHHHHHHH
Confidence 1111100 00 12345566544432 2345699999999992 34677888
Q ss_pred hhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCc-cccHHHHHHhCCCCcH
Q 005304 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSG 437 (703)
Q Consensus 359 ~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~lA~~t~G~sg 437 (703)
+.|+.. ...++||.+|+.++.|-+.|++ |+ .++.|..++.++..++|+..+.+.++.. +..+..|++...| +.
T Consensus 142 K~LEEp--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dl 215 (824)
T PRK07764 142 KIVEEP--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SV 215 (824)
T ss_pred HHHhCC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888854 3467788888888888888988 66 5789999999999999988876555432 2235667777665 77
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 438 adL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
+++.++++..... .+...||.+++...+
T Consensus 216 R~Al~eLEKLia~---~~~~~IT~e~V~all 243 (824)
T PRK07764 216 RDSLSVLDQLLAG---AGPEGVTYERAVALL 243 (824)
T ss_pred HHHHHHHHHHHhh---cCCCCCCHHHHHHHh
Confidence 8888888775532 234568888776543
No 107
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.2e-13 Score=160.89 Aligned_cols=213 Identities=22% Similarity=0.314 Sum_probs=153.0
Q ss_pred ccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEE---Eeec
Q 005304 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF---SISG 297 (703)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi---~is~ 297 (703)
+.++.++.+|+||+|++.+++.|+..+..- +.++.+||+||+|+|||++|+++|..+.++-. .-.|
T Consensus 8 l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC 76 (725)
T PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPC 76 (725)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCch
Confidence 456778899999999999999888887531 34668999999999999999999998865321 1122
Q ss_pred hhHHH---H----H--h---hhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhh
Q 005304 298 SEFVE---M----F--V---GVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 361 (703)
Q Consensus 298 se~~~---~----~--~---G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~l 361 (703)
..... . + - ..+...+|++.+.+.. ....|++|||+|.+. ...++.||..|
T Consensus 77 ~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------------~~A~NALLKtL 142 (725)
T PRK07133 77 QECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------------KSAFNALLKTL 142 (725)
T ss_pred hHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------------HHHHHHHHHHh
Confidence 22111 0 0 0 1234557888777653 234699999999982 23678888888
Q ss_pred cCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCcc-ccHHHHHHhCCCCcHHHH
Q 005304 362 DGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSGADL 440 (703)
Q Consensus 362 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~lA~~t~G~sgadL 440 (703)
+.. ...+++|.+|+.++.|.+.+++ |+. .+.|.+|+.++....++..+.+.++..+ ..+..++..+.| +.+++
T Consensus 143 EEP--P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~A 216 (725)
T PRK07133 143 EEP--PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDA 216 (725)
T ss_pred hcC--CCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 853 4567888888889999999988 774 7899999999999988887665444322 236677877765 67888
Q ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 441 ANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 441 ~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
.++++.+.... ...|+.+++.+.+
T Consensus 217 lslLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 217 LSIAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHHHHHHHHhc----cCCCCHHHHHHHH
Confidence 88887765442 3348888887654
No 108
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.54 E-value=1.2e-13 Score=141.46 Aligned_cols=202 Identities=20% Similarity=0.317 Sum_probs=124.6
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEeechhH
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEF 300 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~se~ 300 (703)
++.||++++-.+.-+..+.-+-....++.. .-..++||||+|+|||+|.+|++++. +..++|+++.+|
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~~~-------~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f 75 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENPGE-------RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF 75 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHSTTT-------SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcCCC-------CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH
Confidence 567999986434333333222222333321 12369999999999999999998864 678999999999
Q ss_pred HHHHhhhhhh-HHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005304 301 VEMFVGVGAS-RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (703)
Q Consensus 301 ~~~~~G~~~~-~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (703)
...+...... .+.++.+.. . ...+|+||++|.+.. ....+..+..++ +.+..+.+.+|+++...|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~-~-~~DlL~iDDi~~l~~---------~~~~q~~lf~l~---n~~~~~~k~li~ts~~~P 141 (219)
T PF00308_consen 76 IREFADALRDGEIEEFKDRL-R-SADLLIIDDIQFLAG---------KQRTQEELFHLF---NRLIESGKQLILTSDRPP 141 (219)
T ss_dssp HHHHHHHHHTTSHHHHHHHH-C-TSSEEEEETGGGGTT---------HHHHHHHHHHHH---HHHHHTTSEEEEEESS-T
T ss_pred HHHHHHHHHcccchhhhhhh-h-cCCEEEEecchhhcC---------chHHHHHHHHHH---HHHHhhCCeEEEEeCCCC
Confidence 8776543322 222222222 2 346899999999942 222333444444 333345556677666666
Q ss_pred cc---ccccccCCCccce--eeeecCCChhhHHHHHHHHhcCCCCCcccc-HHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005304 380 DI---LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFDADVS-LDVIAMRTPGFSGADLANLLNEAAILA 451 (703)
Q Consensus 380 ~~---LD~aLlRpgRfdr--~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~lA~~t~G~sgadL~~lv~eAa~~A 451 (703)
.. +++.|.+ ||.. .+.+..||.+.|.+|++..+....+.-+.+ .+.|+.+.+ -+.++|..+++.-...+
T Consensus 142 ~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 142 SELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAYA 216 (219)
T ss_dssp TTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred ccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Confidence 64 4677777 8876 889999999999999999887766553322 667777776 47899999888766554
No 109
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.54 E-value=2.1e-13 Score=158.15 Aligned_cols=219 Identities=17% Similarity=0.185 Sum_probs=145.5
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEeech
Q 005304 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSISGS 298 (703)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~pfi~is~s 298 (703)
.-+.|.|.++..++|..++...-. |..+...++|+|+||||||++++.+..++ .+.+++++|.
T Consensus 753 VPD~LPhREeEIeeLasfL~paIk-------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIK-------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHh-------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 346788999888888887765322 11122335799999999999999997655 2567899995
Q ss_pred hHHHH----------Hhhh-------hhhHHHHHHHHHH--hcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHh
Q 005304 299 EFVEM----------FVGV-------GASRVRDLFKKAK--ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (703)
Q Consensus 299 e~~~~----------~~G~-------~~~~ir~lF~~A~--~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~ 359 (703)
.+... +.+. ....+..+|.... ....+||+|||||.|..+ .+..+..|+.
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR 894 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFD 894 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHHHHHHHH
Confidence 43321 1111 1234556666542 234579999999999532 2456666666
Q ss_pred hhcCccCCCCeEEEEecCC---cccccccccCCCccce-eeeecCCChhhHHHHHHHHhcCCC-CCccccHHHHHHhCCC
Q 005304 360 EMDGFEGNTGIIVIAATNR---ADILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSNKK-FDADVSLDVIAMRTPG 434 (703)
Q Consensus 360 ~ld~~~~~~~ViVIaaTN~---p~~LD~aLlRpgRfdr-~I~i~~Pd~~eR~~IL~~~l~~~~-l~~dvdl~~lA~~t~G 434 (703)
... .....++||+++|. ++.|++.+.+ ||.. .+.|++++.+++.+||+.++.... .-.+..++.+|+....
T Consensus 895 ~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq 970 (1164)
T PTZ00112 895 WPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN 970 (1164)
T ss_pred Hhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Confidence 433 23457999999986 6678888888 6654 588999999999999999887532 1122235666664432
Q ss_pred C--cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 005304 435 F--SGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (703)
Q Consensus 435 ~--sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~ 472 (703)
. ..+..-.+|+.|+.. ++...|+.+|+.+|++++.
T Consensus 971 ~SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE 1007 (1164)
T PTZ00112 971 VSGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLF 1007 (1164)
T ss_pred cCCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHH
Confidence 2 334444566666654 3445899999999998763
No 110
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.3e-13 Score=158.58 Aligned_cols=212 Identities=18% Similarity=0.176 Sum_probs=148.1
Q ss_pred ccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------EEEe
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSI 295 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p-------fi~i 295 (703)
+++++.+|+||+|++.+++.|...+.. .++|+.+||+||+|||||++|+++|+.+++. .-.+
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 567788999999999999998888752 2456678999999999999999999987642 1110
Q ss_pred -echhHHH------------HHhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHH
Q 005304 296 -SGSEFVE------------MFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (703)
Q Consensus 296 -s~se~~~------------~~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL 358 (703)
+|-.+.. .-...+...+|++.+.+.. ....|++|||+|.+. ....|.||
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------------~~A~NALL 139 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------------TAGFNALL 139 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------------HHHHHHHH
Confidence 1111110 0001134456666555432 223599999999982 23678888
Q ss_pred hhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCc-cccHHHHHHhCCCCcH
Q 005304 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSG 437 (703)
Q Consensus 359 ~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~lA~~t~G~sg 437 (703)
..|+.. ...+++|.+|+.++.+.+.+++ |. .++.|..++.++..+.++..+.+.+..- +..+..++..+. .+.
T Consensus 140 K~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~-Gdl 213 (584)
T PRK14952 140 KIVEEP--PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG-GSP 213 (584)
T ss_pred HHHhcC--CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCH
Confidence 888853 4578888888888999999988 75 5789999999998888888777655432 223556666555 578
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 438 adL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
+++.++++.+...+ +...||.+++.+.+
T Consensus 214 R~aln~Ldql~~~~---~~~~It~~~v~~ll 241 (584)
T PRK14952 214 RDTLSVLDQLLAGA---ADTHVTYQRALGLL 241 (584)
T ss_pred HHHHHHHHHHHhcc---CCCCcCHHHHHHHH
Confidence 88888888875433 34568877776553
No 111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.9e-13 Score=158.07 Aligned_cols=214 Identities=19% Similarity=0.259 Sum_probs=153.4
Q ss_pred cccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEe----
Q 005304 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI---- 295 (703)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~i---- 295 (703)
...+++++.+|+||+|++.+++.|...+.. .++|+++||+||+|+|||++|+++|+.+.+.....
T Consensus 13 ~la~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~ 81 (598)
T PRK09111 13 VLARKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGP 81 (598)
T ss_pred hHHhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCC
Confidence 345677888999999999999998887753 24567899999999999999999999886542111
Q ss_pred ---------echhHHHH----------HhhhhhhHHHHHHHHHHhc----CCeEEEEcCcccccccCCCCCCCCChHHHH
Q 005304 296 ---------SGSEFVEM----------FVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (703)
Q Consensus 296 ---------s~se~~~~----------~~G~~~~~ir~lF~~A~~~----aP~ILfIDEID~L~~~r~~~~~~~~~e~~~ 352 (703)
+|..+.+. -...+...+|++++.+... ...|++|||+|.+. ..
T Consensus 82 ~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------------~~ 147 (598)
T PRK09111 82 TIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------------TA 147 (598)
T ss_pred ccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------------HH
Confidence 12111110 0012345678888776432 24699999999982 24
Q ss_pred HHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCcc-ccHHHHHHh
Q 005304 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMR 431 (703)
Q Consensus 353 ~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~lA~~ 431 (703)
..|.||..|+.. ...+++|.+|+.++.+.+.+++ |+ ..+.|..|+.++....++..+.+.+..-+ ..+..|+..
T Consensus 148 a~naLLKtLEeP--p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~ 222 (598)
T PRK09111 148 AFNALLKTLEEP--PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARA 222 (598)
T ss_pred HHHHHHHHHHhC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 578888888854 3456777777877888888887 77 47899999999999999888766544322 336677777
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 432 t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
+.| +.+++.++++.+... +...||.+++.+.+
T Consensus 223 a~G-dlr~al~~Ldkli~~----g~g~It~e~V~~ll 254 (598)
T PRK09111 223 AEG-SVRDGLSLLDQAIAH----GAGEVTAEAVRDML 254 (598)
T ss_pred cCC-CHHHHHHHHHHHHhh----cCCCcCHHHHHHHh
Confidence 765 788888888876544 23569988888655
No 112
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.3e-13 Score=159.63 Aligned_cols=205 Identities=20% Similarity=0.345 Sum_probs=149.0
Q ss_pred cccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 291 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p---------- 291 (703)
.++.++.+|+||+|++++++.|.+.+.. .+.|+.+|||||+|+|||++|+++|+.+.++
T Consensus 7 ~~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~ 75 (576)
T PRK14965 7 ARKYRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV 75 (576)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc
Confidence 3567788999999999999998887753 2456689999999999999999999987643
Q ss_pred --------------EEEeechhHHHHHhhhhhhHHHHHHHHHHhc----CCeEEEEcCcccccccCCCCCCCCChHHHHH
Q 005304 292 --------------FFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (703)
Q Consensus 292 --------------fi~is~se~~~~~~G~~~~~ir~lF~~A~~~----aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~ 353 (703)
++++++.. ..+.+.++++.+.+... ...|++|||+|.+. ...
T Consensus 76 c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------------~~a 135 (576)
T PRK14965 76 CPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------------TNA 135 (576)
T ss_pred cHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------------HHH
Confidence 22222211 12345677777766422 23599999999982 245
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhC
Q 005304 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (703)
Q Consensus 354 l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t 432 (703)
.|.||..|+.. ..++++|.+||.++.|.+.+++ |+ ..+.|..++..+....+...+.+.++. ++..+..++..+
T Consensus 136 ~naLLk~LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a 210 (576)
T PRK14965 136 FNALLKTLEEP--PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKG 210 (576)
T ss_pred HHHHHHHHHcC--CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 78888888853 4568888888999999999988 76 478899999988888888777655443 233467788887
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 005304 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (703)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~A 467 (703)
.| +.+++.+++..+.... + ..|+.+++...
T Consensus 211 ~G-~lr~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 211 DG-SMRDSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred CC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 75 6788888887765543 2 35888777654
No 113
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.53 E-value=4.1e-13 Score=141.01 Aligned_cols=188 Identities=25% Similarity=0.303 Sum_probs=118.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechh------HHHHHhhhhhhHHHH--------------------HHHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE------FVEMFVGVGASRVRD--------------------LFKKA 319 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se------~~~~~~G~~~~~ir~--------------------lF~~A 319 (703)
++||+||||||||++|+++|...|.||+.++|.. +...+.+.....+.+ .+-.|
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A 102 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLA 102 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHH
Confidence 7999999999999999999999999999998754 222222211111111 11122
Q ss_pred HhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc----Cc-------cCCCCeEEEEecCCcc-----ccc
Q 005304 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD----GF-------EGNTGIIVIAATNRAD-----ILD 383 (703)
Q Consensus 320 ~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld----~~-------~~~~~ViVIaaTN~p~-----~LD 383 (703)
.. .+.+|+|||||.+ +.+.+..+..+|.+-. +. ..+.++.||+|+|... .++
T Consensus 103 ~~-~g~~lllDEi~r~-----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~ 170 (262)
T TIGR02640 103 VR-EGFTLVYDEFTRS-----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQ 170 (262)
T ss_pred HH-cCCEEEEcchhhC-----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceeccc
Confidence 22 2469999999997 3334444444443210 00 1224678999999753 568
Q ss_pred ccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccc--cHHHHHHh------CCCCcHHHHHHHHHHHHHHHHHhC
Q 005304 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV--SLDVIAMR------TPGFSGADLANLLNEAAILAGRRG 455 (703)
Q Consensus 384 ~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dv--dl~~lA~~------t~G~sgadL~~lv~eAa~~A~r~~ 455 (703)
++|++ || ..+.++.|+.++..+|++.+.. .+.+. .+..++.. ....+ ++.++.-|...+....
T Consensus 171 ~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~~~~~iv~~~~~~R~~~~~~~~~---~r~~i~~~~~~~~~~~ 241 (262)
T TIGR02640 171 DALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAEDSAATIVRLVREFRASGDEITSG---LRASLMIAEVATQQDI 241 (262)
T ss_pred HHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHhhCCccCCc---HHHHHHHHHHHHHcCC
Confidence 89998 88 5789999999999999998752 22211 01112111 11223 4444555555555566
Q ss_pred CCCcCHHHHHHHHHHHHcC
Q 005304 456 KAAISSKEIDDSIDRIVAG 474 (703)
Q Consensus 456 ~~~It~~di~~Al~~v~~g 474 (703)
+..++.+||.+....++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~ 260 (262)
T TIGR02640 242 PVDVDDEDFVDLCIDILAS 260 (262)
T ss_pred CCCCCcHHHHHHHHHHhcc
Confidence 7788999998888776543
No 114
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2.3e-13 Score=154.24 Aligned_cols=213 Identities=22% Similarity=0.320 Sum_probs=147.7
Q ss_pred ccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------CEE
Q 005304 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFF 293 (703)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~-------pfi 293 (703)
+..+.++.+|+|++|++.+.+.|...+..- +.++.+|||||+|+|||++|+.+|..+++ |+-
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~ 74 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCG 74 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCC
Confidence 345667889999999999999888877432 34557899999999999999999998764 111
Q ss_pred E-eechhHHH-----HH-----hhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHH
Q 005304 294 S-ISGSEFVE-----MF-----VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (703)
Q Consensus 294 ~-is~se~~~-----~~-----~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL 358 (703)
. .+|..+.. .+ ...+...++.+.+.+.. ..+.|++|||+|.+. ....+.|+
T Consensus 75 ~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------------~~a~naLL 140 (486)
T PRK14953 75 KCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------------KEAFNALL 140 (486)
T ss_pred ccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------------HHHHHHHH
Confidence 1 11211111 00 11233446666655532 234699999999882 23467777
Q ss_pred hhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCcc-ccHHHHHHhCCCCcH
Q 005304 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSG 437 (703)
Q Consensus 359 ~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~lA~~t~G~sg 437 (703)
..++.. ...+++|.+|+.++.+.+++.+ |+. .+.+.+|+.++...+++.++...++..+ ..+..++..+.| +.
T Consensus 141 k~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~l 214 (486)
T PRK14953 141 KTLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GM 214 (486)
T ss_pred HHHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 777753 3456666677778888888888 764 6899999999999999988876554432 236677777765 67
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 438 adL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
+++.++++.+... +...||.+++.+++
T Consensus 215 r~al~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 215 RDAASLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 8888888877644 24468888887754
No 115
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.53 E-value=4.5e-13 Score=143.30 Aligned_cols=208 Identities=22% Similarity=0.296 Sum_probs=139.5
Q ss_pred ccccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCEE
Q 005304 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFF 293 (703)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~-----~pfi 293 (703)
.+|.+++++.+|+|++|.+++++.+...+.. . ..| +++|+||||||||++++++++++. .+++
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~---~--------~~~-~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i 72 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKE---K--------NMP-HLLFAGPPGTGKTTAALALARELYGEDWRENFL 72 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhC---C--------CCC-eEEEECCCCCCHHHHHHHHHHHHcCCccccceE
Confidence 4578889999999999999999988877642 1 112 589999999999999999999873 3455
Q ss_pred EeechhHHHHHhhhhhhHHHHHHHHHHh------cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCC
Q 005304 294 SISGSEFVEMFVGVGASRVRDLFKKAKE------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (703)
Q Consensus 294 ~is~se~~~~~~G~~~~~ir~lF~~A~~------~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~ 367 (703)
.+++++-. +...+++.+..... ..+.+|+|||+|.+. .. ..+.|+..++....
T Consensus 73 ~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~-----------~~---~~~~L~~~le~~~~- 131 (319)
T PRK00440 73 ELNASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT-----------SD---AQQALRRTMEMYSQ- 131 (319)
T ss_pred Eecccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC-----------HH---HHHHHHHHHhcCCC-
Confidence 55544321 11122222222211 234699999999982 11 23345555554433
Q ss_pred CCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHH
Q 005304 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNE 446 (703)
Q Consensus 368 ~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~e 446 (703)
...+|.++|.+..+.+++.+ |+. .+++++|+.++...+++.++.+.+.. .+..+..++..+.| +.+.+.+.++.
T Consensus 132 -~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~ 206 (319)
T PRK00440 132 -NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQA 206 (319)
T ss_pred -CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 34555667777777777877 665 58999999999999999888765542 23347788877654 56666666655
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHH
Q 005304 447 AAILAGRRGKAAISSKEIDDSID 469 (703)
Q Consensus 447 Aa~~A~r~~~~~It~~di~~Al~ 469 (703)
++.. ...||.+++..++.
T Consensus 207 ~~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 207 AAAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred HHHc-----CCCCCHHHHHHHhC
Confidence 4432 35799999987764
No 116
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.2e-13 Score=151.76 Aligned_cols=214 Identities=20% Similarity=0.350 Sum_probs=145.5
Q ss_pred ccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhH
Q 005304 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (703)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~ 300 (703)
+.++.++.+|+|++|++.+++.+.+.+.. ...|+++|||||||+|||++|+++|+....+.....+..+
T Consensus 7 ~~~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~ 75 (367)
T PRK14970 7 SARKYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDF 75 (367)
T ss_pred HHHHHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 45677889999999999999888777742 1346689999999999999999999987553211111100
Q ss_pred ------HHHHhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCe
Q 005304 301 ------VEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGI 370 (703)
Q Consensus 301 ------~~~~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~V 370 (703)
.+.....+...++++++.+.. ..+.||+|||+|.+. ...++.|+..++.. ....
T Consensus 76 ~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~--------------~~~~~~ll~~le~~--~~~~ 139 (367)
T PRK14970 76 SFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS--------------SAAFNAFLKTLEEP--PAHA 139 (367)
T ss_pred CcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC--------------HHHHHHHHHHHhCC--CCce
Confidence 000111223567777776643 234699999999882 12456777777643 3345
Q ss_pred EEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHH
Q 005304 371 IVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAI 449 (703)
Q Consensus 371 iVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~ 449 (703)
++|.+|+.+..+.+++.+ |+ ..++++.|+.++...++...+.+.+.. ++..++.++..+.| +.+.+.+.++....
T Consensus 140 ~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~ 215 (367)
T PRK14970 140 IFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVT 215 (367)
T ss_pred EEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 666667777888888887 66 368999999999998888877665542 23346777777654 66777777766654
Q ss_pred HHHHhCCCCcCHHHHHHHHH
Q 005304 450 LAGRRGKAAISSKEIDDSID 469 (703)
Q Consensus 450 ~A~r~~~~~It~~di~~Al~ 469 (703)
.+ +.. ||.+++++.+.
T Consensus 216 y~---~~~-it~~~v~~~~~ 231 (367)
T PRK14970 216 FC---GKN-ITRQAVTENLN 231 (367)
T ss_pred hc---CCC-CCHHHHHHHhC
Confidence 44 333 88888776653
No 117
>PRK06620 hypothetical protein; Validated
Probab=99.52 E-value=3.4e-13 Score=137.56 Aligned_cols=199 Identities=14% Similarity=0.210 Sum_probs=128.2
Q ss_pred cCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCC-CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARI-PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~-p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
..+..+|++++-.+.....+..+..+...| +..+ -+.++||||||+|||+|++++++..+..++. .....
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~~- 79 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCGF------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFFN- 79 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHcc------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhhc-
Confidence 456678999887664443333333332222 1112 1579999999999999999999988763322 11110
Q ss_pred HHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccc-
Q 005304 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI- 381 (703)
Q Consensus 303 ~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~- 381 (703)
.+.+ . ...+|+|||||.+ . +..+..+++.+. .+++.++|+++..|..
T Consensus 80 ----------~~~~----~-~~d~lliDdi~~~-----------~---~~~lf~l~N~~~---e~g~~ilits~~~p~~l 127 (214)
T PRK06620 80 ----------EEIL----E-KYNAFIIEDIENW-----------Q---EPALLHIFNIIN---EKQKYLLLTSSDKSRNF 127 (214)
T ss_pred ----------hhHH----h-cCCEEEEeccccc-----------h---HHHHHHHHHHHH---hcCCEEEEEcCCCcccc
Confidence 0111 1 2368999999965 1 112333333322 2455788888766654
Q ss_pred -ccccccCCCccce--eeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCC
Q 005304 382 -LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA 457 (703)
Q Consensus 382 -LD~aLlRpgRfdr--~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~ 457 (703)
+ ++|++ |+.. .+.+..||.+.+..+++.++....+. ++..++.|+.+..| +.+.+.++++.....+...+ .
T Consensus 128 ~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~-~ 202 (214)
T PRK06620 128 TL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALISK-R 202 (214)
T ss_pred ch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHcC-C
Confidence 5 77888 8865 78999999999999998887654433 22337778888775 78899999988654444443 5
Q ss_pred CcCHHHHHHHH
Q 005304 458 AISSKEIDDSI 468 (703)
Q Consensus 458 ~It~~di~~Al 468 (703)
.||...+.+++
T Consensus 203 ~it~~~~~~~l 213 (214)
T PRK06620 203 KITISLVKEVL 213 (214)
T ss_pred CCCHHHHHHHh
Confidence 68988887765
No 118
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=1.3e-13 Score=157.67 Aligned_cols=213 Identities=18% Similarity=0.237 Sum_probs=147.3
Q ss_pred cccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE-----EE
Q 005304 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-----FS 294 (703)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pf-----i~ 294 (703)
.+.++.++.+|+|++|++.+++.+.+.+.. .+.|+++||+||||+|||++|+++|..+.+.- ..
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~C 73 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCC 73 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 345677889999999999999988877642 24466899999999999999999999875310 00
Q ss_pred eechhHHH-------------HHhhhhhhHHHHHHHHHHhc----CCeEEEEcCcccccccCCCCCCCCChHHHHHHHHH
Q 005304 295 ISGSEFVE-------------MFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (703)
Q Consensus 295 is~se~~~-------------~~~G~~~~~ir~lF~~A~~~----aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~L 357 (703)
-.|..... .....+...+|++.+.+... ...|++|||+|.+- ....+.|
T Consensus 74 g~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt--------------~~A~NaL 139 (605)
T PRK05896 74 NSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS--------------TSAWNAL 139 (605)
T ss_pred cccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC--------------HHHHHHH
Confidence 11111100 00012344577777665432 23599999999982 2245778
Q ss_pred HhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCc
Q 005304 358 LTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFS 436 (703)
Q Consensus 358 L~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~s 436 (703)
+..|+.. ...+++|.+|+.++.+.+.+++ |+. .+++..|+..+....++..+...+.. ++..+..++..+.| +
T Consensus 140 LKtLEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-d 213 (605)
T PRK05896 140 LKTLEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-S 213 (605)
T ss_pred HHHHHhC--CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 8877743 4467888888889999999988 774 78999999999998888877654432 22336677777765 6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 005304 437 GADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (703)
Q Consensus 437 gadL~~lv~eAa~~A~r~~~~~It~~di~~A 467 (703)
.+++.++++.+...+ + ..|+.+++.+.
T Consensus 214 lR~AlnlLekL~~y~---~-~~It~e~V~el 240 (605)
T PRK05896 214 LRDGLSILDQLSTFK---N-SEIDIEDINKT 240 (605)
T ss_pred HHHHHHHHHHHHhhc---C-CCCCHHHHHHH
Confidence 788878877754433 3 23888777764
No 119
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.52 E-value=1e-13 Score=164.83 Aligned_cols=167 Identities=22% Similarity=0.367 Sum_probs=122.5
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH-----
Q 005304 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE----- 302 (703)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~----- 302 (703)
+--+|+.|++++|+++.+.+...+.... .....++|+||||+|||++++.+|+.++.+|+.++++...+
T Consensus 319 ~l~~~~~g~~~vK~~i~~~l~~~~~~~~------~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~ 392 (784)
T PRK10787 319 ILDTDHYGLERVKDRILEYLAVQSRVNK------IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIR 392 (784)
T ss_pred HhhhhccCHHHHHHHHHHHHHHHHhccc------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhc
Confidence 3345699999999999988775433211 11236999999999999999999999999999998765432
Q ss_pred ----HHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcC-----cc--------
Q 005304 303 ----MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-----FE-------- 365 (703)
Q Consensus 303 ----~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~-----~~-------- 365 (703)
.|.|....++...+..+....| ||+|||||.+..... + .....|+..+|. |.
T Consensus 393 g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~-----g-----~~~~aLlevld~~~~~~~~d~~~~~~~ 461 (784)
T PRK10787 393 GHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR-----G-----DPASALLEVLDPEQNVAFSDHYLEVDY 461 (784)
T ss_pred cchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC-----C-----CHHHHHHHHhccccEEEEecccccccc
Confidence 3556666666666766544444 789999999964321 1 123455555542 11
Q ss_pred CCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhc
Q 005304 366 GNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (703)
Q Consensus 366 ~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~ 415 (703)
.-.++++|+|+|.. .++++|++ ||+ .|.+..++.++..+|.+.++.
T Consensus 462 dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 462 DLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred cCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 12579999999987 59999999 995 789999999999999988874
No 120
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=3.5e-13 Score=153.25 Aligned_cols=205 Identities=21% Similarity=0.281 Sum_probs=147.9
Q ss_pred cccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 291 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p---------- 291 (703)
.+++++.+|+||+|++.+++.|...+.. .+.|+.+|||||+|+|||++|+++|+.+.++
T Consensus 5 ~~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~ 73 (535)
T PRK08451 5 ALKYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDT 73 (535)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 4567889999999999999998888742 2456678999999999999999999987421
Q ss_pred --------------EEEeechhHHHHHhhhhhhHHHHHHHHHHhc----CCeEEEEcCcccccccCCCCCCCCChHHHHH
Q 005304 292 --------------FFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (703)
Q Consensus 292 --------------fi~is~se~~~~~~G~~~~~ir~lF~~A~~~----aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~ 353 (703)
++.++++. ..+...++++.+..... ...|++|||+|.+. ...
T Consensus 74 C~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------------~~A 133 (535)
T PRK08451 74 CIQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------------KEA 133 (535)
T ss_pred cHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHH
Confidence 22222211 11235677776654321 22599999999982 346
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhC
Q 005304 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (703)
Q Consensus 354 l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t 432 (703)
+|.||..|+.. ...+.+|.+|+.+..+.+++++ |. ..++|.+++.++....++..+...+.. .+..+..++..+
T Consensus 134 ~NALLK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s 208 (535)
T PRK08451 134 FNALLKTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSG 208 (535)
T ss_pred HHHHHHHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 77888888865 3456677777888999999998 75 588999999999888888777654433 233467788777
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 005304 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (703)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~A 467 (703)
.| +.+++.+++..+...+ ...||.+++.+.
T Consensus 209 ~G-dlR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 209 NG-SLRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred CC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 65 7889999988877654 345777766654
No 121
>PRK05642 DNA replication initiation factor; Validated
Probab=99.52 E-value=5.7e-13 Score=137.68 Aligned_cols=213 Identities=16% Similarity=0.189 Sum_probs=136.8
Q ss_pred ccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechh
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se 299 (703)
...+..+|++++.... ....+.+..+... .+.....+++||||+|+|||+|++++++++ +..+++++..+
T Consensus 11 ~~~~~~tfdnF~~~~~--~~a~~~~~~~~~~-----~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~ 83 (234)
T PRK05642 11 RLRDDATFANYYPGAN--AAALGYVERLCEA-----DAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE 83 (234)
T ss_pred CCCCcccccccCcCCh--HHHHHHHHHHhhc-----cccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH
Confidence 3456678999883332 2233333222110 011123579999999999999999998754 67899999988
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005304 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (703)
Q Consensus 300 ~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (703)
+.... ..+.+..... .+|+|||++.+..+ ...+..+..+++. +..+...++++++..|
T Consensus 84 ~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~---------~~~~~~Lf~l~n~---~~~~g~~ilits~~~p 141 (234)
T PRK05642 84 LLDRG--------PELLDNLEQY--ELVCLDDLDVIAGK---------ADWEEALFHLFNR---LRDSGRRLLLAASKSP 141 (234)
T ss_pred HHhhh--------HHHHHhhhhC--CEEEEechhhhcCC---------hHHHHHHHHHHHH---HHhcCCEEEEeCCCCH
Confidence 77531 1233333222 58999999988422 2233334444433 3334556777777665
Q ss_pred cc---ccccccCCCccc--eeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005304 380 DI---LDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGR 453 (703)
Q Consensus 380 ~~---LD~aLlRpgRfd--r~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r 453 (703)
.. ..+.|++ ||. ..+.+..|+.+++.++++..+....+. ++.-++.++.+..+ +.+.+.++++.-...+..
T Consensus 142 ~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~ 218 (234)
T PRK05642 142 RELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQ 218 (234)
T ss_pred HHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 43 3688888 885 477889999999999999665544332 23336778887774 789999998877654444
Q ss_pred hCCCCcCHHHHHHHH
Q 005304 454 RGKAAISSKEIDDSI 468 (703)
Q Consensus 454 ~~~~~It~~di~~Al 468 (703)
....||..-+++++
T Consensus 219 -~~~~it~~~~~~~L 232 (234)
T PRK05642 219 -AQRKLTIPFLKETL 232 (234)
T ss_pred -cCCcCCHHHHHHHh
Confidence 33568887777765
No 122
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=4.6e-13 Score=154.09 Aligned_cols=211 Identities=19% Similarity=0.264 Sum_probs=148.7
Q ss_pred ccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------EEEe
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSI 295 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p-------fi~i 295 (703)
.+.++.+|+||+|++.+++.|+..+.. .+.++.+|||||||+|||++|+++|+.+.++ .-.+
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 456788999999999999988887752 2346689999999999999999999988652 1111
Q ss_pred -echhHHHH-------Hhh---hhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhh
Q 005304 296 -SGSEFVEM-------FVG---VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 360 (703)
Q Consensus 296 -s~se~~~~-------~~G---~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ 360 (703)
+|..+.+. +.| .+...++++.+.+.. ....|++|||+|.+. ...+|.||..
T Consensus 77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------------~~a~naLLK~ 142 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------------NSAFNALLKT 142 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------------HHHHHHHHHh
Confidence 11111110 011 223456666655432 334699999999982 2467888888
Q ss_pred hcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHH
Q 005304 361 MDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGAD 439 (703)
Q Consensus 361 ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgad 439 (703)
++. ....+++|.+|+.++.+.+++++ |+. .++|.+++.++..++++..+...+.. ++..+..|+..+.| +.++
T Consensus 143 LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~ 216 (563)
T PRK06647 143 IEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRD 216 (563)
T ss_pred hcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 884 34567888888888999999988 774 68999999999999998877554433 23336677877765 7888
Q ss_pred HHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 440 LANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 440 L~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
+.++++.+...+ ...|+.+++.+.+
T Consensus 217 alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 217 AYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 888888765443 2458887777654
No 123
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3.1e-13 Score=150.09 Aligned_cols=216 Identities=15% Similarity=0.241 Sum_probs=146.7
Q ss_pred cccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEE--------
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF-------- 293 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi-------- 293 (703)
.++.++.+|++|+|++.+++.|+..+.. .+.|..+||+||||+|||++|+++|+.+.+.-.
T Consensus 7 ~~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 7 ARKYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HHhcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccc
Confidence 4567888999999999999988877752 245668999999999999999999998866310
Q ss_pred --Eeec------hhHHH-------HHhh---hhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHH
Q 005304 294 --SISG------SEFVE-------MFVG---VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDERE 351 (703)
Q Consensus 294 --~is~------se~~~-------~~~G---~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~ 351 (703)
.-.| ..+.. .+.+ .+...++++.+.+.. ....|++|||+|.+. .
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~--------------~ 141 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS--------------I 141 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC--------------H
Confidence 0011 11110 0111 123556666655532 123599999999982 2
Q ss_pred HHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHH
Q 005304 352 QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAM 430 (703)
Q Consensus 352 ~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~ 430 (703)
...+.|+..++.. ....++|.+|+.+..+-+.+.+ |+. .+++..++.++....++..+...... ++..+..++.
T Consensus 142 ~~~~~LLk~LEep--~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~ 216 (397)
T PRK14955 142 AAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGR 216 (397)
T ss_pred HHHHHHHHHHhcC--CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3456777777743 3355666666777888888887 664 78899999998888888777554432 2233677777
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHH-hCCCCcCHHHHHHHH
Q 005304 431 RTPGFSGADLANLLNEAAILAGR-RGKAAISSKEIDDSI 468 (703)
Q Consensus 431 ~t~G~sgadL~~lv~eAa~~A~r-~~~~~It~~di~~Al 468 (703)
.+.| +.+.+.+.++.+...+.. .....|+.+++.+.+
T Consensus 217 ~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 217 KAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 7765 677888888777666532 234589998888776
No 124
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.50 E-value=5.3e-13 Score=146.35 Aligned_cols=176 Identities=29% Similarity=0.444 Sum_probs=125.8
Q ss_pred ccccchHHHHHHHHHHHH-hcCchhhhhc-cCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH-HHhh-h
Q 005304 232 DVAGVDEAKQDFMEVVEF-LKKPERFTAI-GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVG-V 307 (703)
Q Consensus 232 dv~G~de~k~~L~e~v~~-l~~p~~~~~l-g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~-~~~G-~ 307 (703)
-|+|++++|+.+...+.. ++.......+ .--.|+++||+||||||||++|+++|..++.||+.+++..+.+ .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 489999999998776653 1221111111 1235789999999999999999999999999999999887764 4666 3
Q ss_pred hhhHHHHHHHHH--------------------------------------------------------------------
Q 005304 308 GASRVRDLFKKA-------------------------------------------------------------------- 319 (703)
Q Consensus 308 ~~~~ir~lF~~A-------------------------------------------------------------------- 319 (703)
.+..++.+|+.|
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 445555555444
Q ss_pred ---------------------------------------------------------------------H--hcCCeEEE
Q 005304 320 ---------------------------------------------------------------------K--ENAPCIVF 328 (703)
Q Consensus 320 ---------------------------------------------------------------------~--~~aP~ILf 328 (703)
. .....|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 0 01346999
Q ss_pred EcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc--------CCCCeEEEEecC----CcccccccccCCCccceee
Q 005304 329 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVIAATN----RADILDSALLRPGRFDRQV 396 (703)
Q Consensus 329 IDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~--------~~~~ViVIaaTN----~p~~LD~aLlRpgRfdr~I 396 (703)
|||||.++.+... .+.+-..+.+...||..++|-. ...+++|||+.- .|+.|=|.|.- ||-..+
T Consensus 253 iDEiDKIa~~~~~--~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v 328 (441)
T TIGR00390 253 IDEIDKIAKKGES--SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRV 328 (441)
T ss_pred EEchhhhcccCCC--CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEE
Confidence 9999999866522 2223344557788888888742 235789998774 46666677765 999999
Q ss_pred eecCCChhhHHHHHH
Q 005304 397 TVDVPDIRGRTEILK 411 (703)
Q Consensus 397 ~i~~Pd~~eR~~IL~ 411 (703)
.+..++.++..+||.
T Consensus 329 ~L~~L~~edL~rILt 343 (441)
T TIGR00390 329 ELQALTTDDFERILT 343 (441)
T ss_pred ECCCCCHHHHHHHhc
Confidence 999999999988883
No 125
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.49 E-value=2.5e-13 Score=152.85 Aligned_cols=208 Identities=21% Similarity=0.320 Sum_probs=157.4
Q ss_pred ccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE--EEeech--
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF--FSISGS-- 298 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pf--i~is~s-- 298 (703)
.++++.+|+|++|++.+...|.+.+..-+. +.+.||+||.|||||++||.+|+.+++.- ..--|.
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~~ri-----------~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALENGRI-----------AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HHhCcccHHHhcccHHHHHHHHHHHHhCcc-----------hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 456788999999999999999999875443 34799999999999999999999887642 111111
Q ss_pred ------------hHHH--HHhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhh
Q 005304 299 ------------EFVE--MFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 360 (703)
Q Consensus 299 ------------e~~~--~~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ 360 (703)
++++ .-...+.+.+|++.+++.- ...-|.+|||+|.| ..+..|.||..
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML--------------S~~afNALLKT 142 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML--------------SKQAFNALLKT 142 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh--------------hHHHHHHHhcc
Confidence 1111 1122356778888888732 23469999999998 45688999999
Q ss_pred hcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCcccc-HHHHHHhCCCCcHHH
Q 005304 361 MDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS-LDVIAMRTPGFSGAD 439 (703)
Q Consensus 361 ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~lA~~t~G~sgad 439 (703)
++ ++..+|++|.||..++.+++.+++ |+. ++.|..-+.++....|...+.+..+..+.+ +..+|+...| |.+|
T Consensus 143 LE--EPP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RD 216 (515)
T COG2812 143 LE--EPPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRD 216 (515)
T ss_pred cc--cCccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Chhh
Confidence 98 456689999999999999999998 663 567888899999999998888777664443 6778888876 7899
Q ss_pred HHHHHHHHHHHHHHhCCCCcCHHHHH
Q 005304 440 LANLLNEAAILAGRRGKAAISSKEID 465 (703)
Q Consensus 440 L~~lv~eAa~~A~r~~~~~It~~di~ 465 (703)
..++++.|..... ..|+.+++.
T Consensus 217 alslLDq~i~~~~----~~It~~~v~ 238 (515)
T COG2812 217 ALSLLDQAIAFGE----GEITLESVR 238 (515)
T ss_pred HHHHHHHHHHccC----CcccHHHHH
Confidence 9999999876652 345554443
No 126
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.49 E-value=3.1e-13 Score=140.77 Aligned_cols=196 Identities=23% Similarity=0.257 Sum_probs=133.3
Q ss_pred ccccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC------E
Q 005304 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------F 292 (703)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p------f 292 (703)
..+++++++.+|+|++|++.+.+.|...+..-..| ++|||||||||||+.|+++|.++..| +
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp------------~~LFyGPpGTGKTStalafar~L~~~~~~~~rv 91 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILP------------HYLFYGPPGTGKTSTALAFARALNCEQLFPCRV 91 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCc------------eEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence 44778899999999999999999999888652222 69999999999999999999998662 2
Q ss_pred EEeechhHHHHHhhhhhhHHHHHHHHHHhc---------CC-eEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc
Q 005304 293 FSISGSEFVEMFVGVGASRVRDLFKKAKEN---------AP-CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (703)
Q Consensus 293 i~is~se~~~~~~G~~~~~ir~lF~~A~~~---------aP-~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld 362 (703)
...+.++..... .....+. -|++.... .| -|++|||.|.+. ....+.|..-|+
T Consensus 92 l~lnaSderGis--vvr~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------------sdaq~aLrr~mE 154 (346)
T KOG0989|consen 92 LELNASDERGIS--VVREKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------------SDAQAALRRTME 154 (346)
T ss_pred hhhccccccccc--chhhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhh--------------HHHHHHHHHHHh
Confidence 333444332211 1111111 13332211 12 599999999992 345677788888
Q ss_pred CccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccc-cHHHHHHhCCCCcHHHHH
Q 005304 363 GFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV-SLDVIAMRTPGFSGADLA 441 (703)
Q Consensus 363 ~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dv-dl~~lA~~t~G~sgadL~ 441 (703)
.+.. .++||..||+.+.|...+.+ |.. .+.|+..+.+.....|+..+.+..+.-+. .++.|+..+.| +-++..
T Consensus 155 ~~s~--~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ai 228 (346)
T KOG0989|consen 155 DFSR--TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAI 228 (346)
T ss_pred cccc--ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHH
Confidence 7544 46777779999999999998 775 56677666666666677666655544332 26778887765 455555
Q ss_pred HHHHHHHH
Q 005304 442 NLLNEAAI 449 (703)
Q Consensus 442 ~lv~eAa~ 449 (703)
..++.++.
T Consensus 229 t~Lqsls~ 236 (346)
T KOG0989|consen 229 TTLQSLSL 236 (346)
T ss_pred HHHHHhhc
Confidence 66666554
No 127
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.49 E-value=7e-13 Score=145.45 Aligned_cols=176 Identities=30% Similarity=0.452 Sum_probs=128.2
Q ss_pred ccccchHHHHHHHHHHHH-hcCchhhhhcc-CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH-HHhh-h
Q 005304 232 DVAGVDEAKQDFMEVVEF-LKKPERFTAIG-ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVG-V 307 (703)
Q Consensus 232 dv~G~de~k~~L~e~v~~-l~~p~~~~~lg-~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~-~~~G-~ 307 (703)
.|+|++++|+.+...+.. ++.......+. -..|+++||+||||||||++|+++|..++.||+.+++++|.+ .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 499999999999877743 22111101111 113689999999999999999999999999999999998886 5777 3
Q ss_pred hhhHHHHHHHHHH-------------------------------------------------------------------
Q 005304 308 GASRVRDLFKKAK------------------------------------------------------------------- 320 (703)
Q Consensus 308 ~~~~ir~lF~~A~------------------------------------------------------------------- 320 (703)
.+..++++|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4556666666551
Q ss_pred ---------------------------------------------------------------------h--cCCeEEEE
Q 005304 321 ---------------------------------------------------------------------E--NAPCIVFV 329 (703)
Q Consensus 321 ---------------------------------------------------------------------~--~aP~ILfI 329 (703)
. ..-.||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 12369999
Q ss_pred cCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc--------CCCCeEEEEecC----CcccccccccCCCccceeee
Q 005304 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVIAATN----RADILDSALLRPGRFDRQVT 397 (703)
Q Consensus 330 DEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~--------~~~~ViVIaaTN----~p~~LD~aLlRpgRfdr~I~ 397 (703)
||||.++.+.+. ++.+-..+.+...||..++|-. ...+++|||+.- .|+.|-|.|.- ||-..+.
T Consensus 256 DEiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~ 331 (443)
T PRK05201 256 DEIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVE 331 (443)
T ss_pred EcchhhcccCCC--CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEE
Confidence 999999876432 2233344557788898888732 345789998763 46667788876 9999999
Q ss_pred ecCCChhhHHHHHH
Q 005304 398 VDVPDIRGRTEILK 411 (703)
Q Consensus 398 i~~Pd~~eR~~IL~ 411 (703)
+..++.++..+||.
T Consensus 332 L~~L~~~dL~~ILt 345 (443)
T PRK05201 332 LDALTEEDFVRILT 345 (443)
T ss_pred CCCCCHHHHHHHhc
Confidence 99999999988883
No 128
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.9e-12 Score=141.80 Aligned_cols=218 Identities=22% Similarity=0.337 Sum_probs=153.6
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----EEEeechhHHHH
Q 005304 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-----FFSISGSEFVEM 303 (703)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p-----fi~is~se~~~~ 303 (703)
.-+.+.+.++..+.+..++...-+. ..|.++++|||||||||..++.++.++.-+ ++++||....+.
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~--------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~ 86 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRG--------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTP 86 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcC--------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCH
Confidence 3344999999999888876553322 235579999999999999999999987433 899999765432
Q ss_pred H---------------hhhhhhH-HHHHHHHHH-hcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccC
Q 005304 304 F---------------VGVGASR-VRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG 366 (703)
Q Consensus 304 ~---------------~G~~~~~-ir~lF~~A~-~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~ 366 (703)
+ .|..... ...+++... ...+.||++||+|.|..+.+ ..+..|+...+..
T Consensus 87 ~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~-- 153 (366)
T COG1474 87 YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN-- 153 (366)
T ss_pred HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--
Confidence 2 1111111 222222222 24567999999999964321 5777777766544
Q ss_pred CCCeEEEEecCCc---ccccccccCCCccc-eeeeecCCChhhHHHHHHHHhcCCC----CCccccHHHHH---HhCCCC
Q 005304 367 NTGIIVIAATNRA---DILDSALLRPGRFD-RQVTVDVPDIRGRTEILKVHGSNKK----FDADVSLDVIA---MRTPGF 435 (703)
Q Consensus 367 ~~~ViVIaaTN~p---~~LD~aLlRpgRfd-r~I~i~~Pd~~eR~~IL~~~l~~~~----l~~dvdl~~lA---~~t~G~ 435 (703)
..+|.+|+.+|.. +.+|+.+.+ +|. ..|.|++++.++...|++.+..... +++++ ++.+| ....|
T Consensus 154 ~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~v-l~lia~~~a~~~G- 229 (366)
T COG1474 154 KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDV-LKLIAALVAAESG- 229 (366)
T ss_pred ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccH-HHHHHHHHHHcCc-
Confidence 5678999999875 578888887 443 3689999999999999998876432 22222 33333 33333
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 005304 436 SGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (703)
Q Consensus 436 sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v 471 (703)
+.+-.-.+|+.|+..|.+++...++.+++..|.+.+
T Consensus 230 DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 230 DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 455566899999999999999999999999995543
No 129
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1.1e-12 Score=147.74 Aligned_cols=207 Identities=19% Similarity=0.266 Sum_probs=143.9
Q ss_pred ccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 005304 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (703)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p--------- 291 (703)
..++.++.+|+||+|++.++..|...+.. .+.|+.+|||||||+|||++|+++|+.+.++
T Consensus 7 ~~~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c 75 (451)
T PRK06305 7 SSRKYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPC 75 (451)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCC
Confidence 34566788999999999999988887753 2356689999999999999999999987542
Q ss_pred ----------------EEEeechhHHHHHhhhhhhHHHHHHHHHH----hcCCeEEEEcCcccccccCCCCCCCCChHHH
Q 005304 292 ----------------FFSISGSEFVEMFVGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDERE 351 (703)
Q Consensus 292 ----------------fi~is~se~~~~~~G~~~~~ir~lF~~A~----~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~ 351 (703)
++.+++.. ..+...++++-+... .....|++|||+|.+. .
T Consensus 76 ~~c~~C~~i~~~~~~d~~~i~g~~------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt--------------~ 135 (451)
T PRK06305 76 NQCASCKEISSGTSLDVLEIDGAS------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT--------------K 135 (451)
T ss_pred cccHHHHHHhcCCCCceEEeeccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC--------------H
Confidence 22222211 012234444433332 2346799999999982 2
Q ss_pred HHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHH
Q 005304 352 QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAM 430 (703)
Q Consensus 352 ~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~ 430 (703)
...+.|+..|+.. ...+++|.+||.++.+.+.+++ |+. .+++..++.++....+...+.+.+.. ++..+..|+.
T Consensus 136 ~~~n~LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~ 210 (451)
T PRK06305 136 EAFNSLLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIAR 210 (451)
T ss_pred HHHHHHHHHhhcC--CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3467788888853 3467777788888999999988 774 78999999999888888776654432 2334677887
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 431 RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 431 ~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
.+.| +.+++.++++..... .+ ..|+.+++.+++
T Consensus 211 ~s~g-dlr~a~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 211 AAQG-SLRDAESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred HcCC-CHHHHHHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 7764 566666666654433 22 348888887665
No 130
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.48 E-value=2.5e-13 Score=146.82 Aligned_cols=219 Identities=23% Similarity=0.364 Sum_probs=134.7
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEeec-
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISG- 297 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-------~~pfi~is~- 297 (703)
.++.|++|+|++++++.+.-.+- ++. -.++||+|+||||||++||++|+-+ ++|+-..+.
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~---~~~---------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI---DPG---------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh---ccC---------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 45789999999999987764321 111 1379999999999999999999987 333221110
Q ss_pred --hhH---------------HHHHhhhhhhHHHH--HHHHH-------------HhcCCeEEEEcCcccccccCCCCCCC
Q 005304 298 --SEF---------------VEMFVGVGASRVRD--LFKKA-------------KENAPCIVFVDEIDAVGRQRGTGIGG 345 (703)
Q Consensus 298 --se~---------------~~~~~G~~~~~ir~--lF~~A-------------~~~aP~ILfIDEID~L~~~r~~~~~~ 345 (703)
.++ ++...+.+..++-. .|+.+ ......+||||||+.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------- 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------- 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC---------
Confidence 000 00000111111100 01111 00112599999999982
Q ss_pred CChHHHHHHHHHHhhhcCc-----------cCCCCeEEEEecCCcc-cccccccCCCccceeeeecCCCh-hhHHHHHHH
Q 005304 346 GNDEREQTLNQLLTEMDGF-----------EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVPDI-RGRTEILKV 412 (703)
Q Consensus 346 ~~~e~~~~l~~LL~~ld~~-----------~~~~~ViVIaaTN~p~-~LD~aLlRpgRfdr~I~i~~Pd~-~eR~~IL~~ 412 (703)
. .++..|+..|+.- .....+++|+++|..+ .++++++. ||...+.++.|.. ++|.+|++.
T Consensus 142 --~---~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 142 --D---HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred --H---HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 2 3444555555321 1234689999999755 68889999 9999999998876 889999987
Q ss_pred HhcCCC----C------Cc--------------------ccc---HHHHHHhCC-CCcHHHHHHHHHHHHHHHHHhCCCC
Q 005304 413 HGSNKK----F------DA--------------------DVS---LDVIAMRTP-GFSGADLANLLNEAAILAGRRGKAA 458 (703)
Q Consensus 413 ~l~~~~----l------~~--------------------dvd---l~~lA~~t~-G~sgadL~~lv~eAa~~A~r~~~~~ 458 (703)
...... + .. +.. +..++..+. .-.-++|. +++.|...|..+|+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~ 293 (334)
T PRK13407 215 RDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEA 293 (334)
T ss_pred hhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCe
Confidence 532110 0 00 000 122222222 12345665 9999999999999999
Q ss_pred cCHHHHHHHHHHHHc
Q 005304 459 ISSKEIDDSIDRIVA 473 (703)
Q Consensus 459 It~~di~~Al~~v~~ 473 (703)
|+.+|+..+..-++.
T Consensus 294 V~~~Di~~~~~~vl~ 308 (334)
T PRK13407 294 VGRSHLRSVATMALS 308 (334)
T ss_pred eCHHHHHHHHHHhhh
Confidence 999999888765543
No 131
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.48 E-value=9e-13 Score=145.88 Aligned_cols=179 Identities=26% Similarity=0.348 Sum_probs=114.6
Q ss_pred ccccchHHHHHHHHHHHH----hcCc-hhhhhccCCC-CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH-HH
Q 005304 232 DVAGVDEAKQDFMEVVEF----LKKP-ERFTAIGARI-PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MF 304 (703)
Q Consensus 232 dv~G~de~k~~L~e~v~~----l~~p-~~~~~lg~~~-p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~-~~ 304 (703)
-|+|++++++.+...+.. +... ..-...+... +.++||+||||||||++|+++|..++.||..++++.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 479999999998877632 2210 0000011111 358999999999999999999999999999999887653 46
Q ss_pred hhhhh-hHHHHHHHHH----HhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccC-----------CC
Q 005304 305 VGVGA-SRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-----------NT 368 (703)
Q Consensus 305 ~G~~~-~~ir~lF~~A----~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~-----------~~ 368 (703)
+|... ..+..++..+ ....++||||||||.+.+++........-..+.+.+.||..|++... ..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 66642 2333333322 23467899999999997654322111111122455666666665321 12
Q ss_pred CeEEEEecCCc---------------------------c-----------------------cccccccCCCccceeeee
Q 005304 369 GIIVIAATNRA---------------------------D-----------------------ILDSALLRPGRFDRQVTV 398 (703)
Q Consensus 369 ~ViVIaaTN~p---------------------------~-----------------------~LD~aLlRpgRfdr~I~i 398 (703)
+.++|.|+|-. + .+.|+|+- |+|..+.+
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeec
Confidence 46777777750 0 02244544 88888999
Q ss_pred cCCChhhHHHHHHH
Q 005304 399 DVPDIRGRTEILKV 412 (703)
Q Consensus 399 ~~Pd~~eR~~IL~~ 412 (703)
.+.+.+...+|+..
T Consensus 316 ~pL~~~~L~~Il~~ 329 (413)
T TIGR00382 316 EKLDEEALIAILTK 329 (413)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999888865
No 132
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.2e-12 Score=152.36 Aligned_cols=208 Identities=18% Similarity=0.279 Sum_probs=142.8
Q ss_pred ccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE----ee--
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS----IS-- 296 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~----is-- 296 (703)
++.++.+|++++|+++++..|.+.+..- +.+.++||+||+|+|||++|+++|+.+.+.... -.
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 5667789999999999999988888642 234579999999999999999999998663110 01
Q ss_pred -chh---HH----------HHHhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHH
Q 005304 297 -GSE---FV----------EMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (703)
Q Consensus 297 -~se---~~----------~~~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL 358 (703)
|.. +. +.....+...+|++++.+.. ....|++|||+|.+. ....+.||
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------------~~a~naLL 142 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------------TAAFNALL 142 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------------HHHHHHHH
Confidence 111 10 01112345678888877643 223699999999982 24678888
Q ss_pred hhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcH
Q 005304 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSG 437 (703)
Q Consensus 359 ~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sg 437 (703)
..|+. ....+++|.+|+.++.+-+.+++ |+ ..+.|..++.++....+...+.+.... .+..+..++..+.| +.
T Consensus 143 K~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~l 216 (620)
T PRK14948 143 KTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GL 216 (620)
T ss_pred HHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CH
Confidence 88884 34567888888888888888988 77 467888888888777777666553332 22236777877776 45
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcCHHHHHH
Q 005304 438 ADLANLLNEAAILAGRRGKAAISSKEIDD 466 (703)
Q Consensus 438 adL~~lv~eAa~~A~r~~~~~It~~di~~ 466 (703)
+++.++++..... . ..|+.+++.+
T Consensus 217 r~A~~lLeklsL~---~--~~It~e~V~~ 240 (620)
T PRK14948 217 RDAESLLDQLSLL---P--GPITPEAVWD 240 (620)
T ss_pred HHHHHHHHHHHhc---c--CCCCHHHHHH
Confidence 7777777654433 1 2466666554
No 133
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.47 E-value=1.9e-12 Score=150.89 Aligned_cols=218 Identities=22% Similarity=0.313 Sum_probs=135.7
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEE
Q 005304 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFS 294 (703)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~pfi~ 294 (703)
.++.+|++++|++++.+.+.+.+. . ..|.+++|+||||||||++|+++++.. +.+|+.
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia---~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVA---S---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHh---c---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 346789999999999887655442 1 124479999999999999999997654 468999
Q ss_pred eechhHH-------HHHhhhhhh----HHHHHHHH----------HHhcCCeEEEEcCcccccccCCCCCCCCChHHHHH
Q 005304 295 ISGSEFV-------EMFVGVGAS----RVRDLFKK----------AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (703)
Q Consensus 295 is~se~~-------~~~~G~~~~----~ir~lF~~----------A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~ 353 (703)
++|..+. ..+.+.... ..+..++. .......+|||||++.+ +...+..
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----------d~~~Q~~ 284 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----------DPLLQNK 284 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----------CHHHHHH
Confidence 9987642 111221110 01111110 01123469999999988 2233333
Q ss_pred HHHHHhhhc------C-----------------ccCCCCeEEEEec-CCcccccccccCCCccceeeeecCCChhhHHHH
Q 005304 354 LNQLLTEMD------G-----------------FEGNTGIIVIAAT-NRADILDSALLRPGRFDRQVTVDVPDIRGRTEI 409 (703)
Q Consensus 354 l~~LL~~ld------~-----------------~~~~~~ViVIaaT-N~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~I 409 (703)
+..++..-. . -.....+++|++| +.++.++++|++ ||. .+.+++++.+++..|
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~I 361 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHH
Confidence 333333210 0 0012346666655 568889999988 886 578899999999999
Q ss_pred HHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHH
Q 005304 410 LKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR--------GKAAISSKEIDDSIDR 470 (703)
Q Consensus 410 L~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~--------~~~~It~~di~~Al~~ 470 (703)
++..+...... .+.-++.|+..+. .++...+++..+...+..+ +...|+.+|+++++..
T Consensus 362 l~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 362 VLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 99988764432 1223555666543 4555556665554443222 2337899999998864
No 134
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.7e-12 Score=150.36 Aligned_cols=215 Identities=15% Similarity=0.243 Sum_probs=146.2
Q ss_pred ccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE--------
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS-------- 294 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~-------- 294 (703)
++.++.+|++|+|++.+++.|++.+.. .+.+.++||+||+|||||++|+++|+.+.+.--.
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 466788999999999999988876642 2456689999999999999999999998763100
Q ss_pred --ee------chhHHH-------HHhh---hhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHH
Q 005304 295 --IS------GSEFVE-------MFVG---VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (703)
Q Consensus 295 --is------~se~~~-------~~~G---~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~ 352 (703)
-. |..+.. .+.+ .+...++++.+.+.. ....|++|||+|.+. ..
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------------~~ 142 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------------TA 142 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------------HH
Confidence 01 111110 0111 124567776666532 224599999999982 23
Q ss_pred HHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHh
Q 005304 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 431 (703)
Q Consensus 353 ~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~ 431 (703)
..+.||..|+... ..+++|.+|+.++.+-+.+.+ |. ..++|..++.++....+...+...+.. ++..++.|+..
T Consensus 143 a~naLLK~LEePp--~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~ 217 (620)
T PRK14954 143 AFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARK 217 (620)
T ss_pred HHHHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4677888887543 345666666777888888888 65 478999999999888888766654432 23346778877
Q ss_pred CCCCcHHHHHHHHHHHHHHHHH-hCCCCcCHHHHHHHH
Q 005304 432 TPGFSGADLANLLNEAAILAGR-RGKAAISSKEIDDSI 468 (703)
Q Consensus 432 t~G~sgadL~~lv~eAa~~A~r-~~~~~It~~di~~Al 468 (703)
+.| +.+++.+.++....++.. .....|+.+++.+.+
T Consensus 218 s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 218 AQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred hCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 765 677777777766555421 224578888887765
No 135
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.4e-12 Score=149.59 Aligned_cols=212 Identities=19% Similarity=0.258 Sum_probs=143.5
Q ss_pred cccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE---ee--
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS---IS-- 296 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~---is-- 296 (703)
.++.++.+|+||+|++.+++.|+..+..- +.++.+||+||+|+|||++|+++|+.+.+..-. ..
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 35678889999999999999988777532 245578999999999999999999987642210 01
Q ss_pred -ch---hHHHH----H------hhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHH
Q 005304 297 -GS---EFVEM----F------VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (703)
Q Consensus 297 -~s---e~~~~----~------~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL 358 (703)
|. .+... + ...+...++++.+.+.. ....|++|||+|.+. ...++.||
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------------~~a~naLL 141 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------------TAAFNALL 141 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------------HHHHHHHH
Confidence 11 11100 0 01223445665554432 224699999999982 23567788
Q ss_pred hhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcH
Q 005304 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSG 437 (703)
Q Consensus 359 ~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sg 437 (703)
..++... ..++||.+++..+.+.+.+++ |+. .+.|..++..+...+++..+.+.++. ++..+..++..+.| +.
T Consensus 142 k~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dl 215 (585)
T PRK14950 142 KTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SM 215 (585)
T ss_pred HHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 8887543 456677777777888888877 664 67899999999888888777655433 22236677777765 78
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 438 adL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
+++.+.++..... +...|+.+++.+.+
T Consensus 216 r~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 216 RDAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred HHHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 8888887765442 33468888876543
No 136
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.44 E-value=2.7e-12 Score=135.84 Aligned_cols=129 Identities=22% Similarity=0.322 Sum_probs=94.9
Q ss_pred CeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC------------cccccccccCCCc
Q 005304 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR------------ADILDSALLRPGR 391 (703)
Q Consensus 324 P~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~------------p~~LD~aLlRpgR 391 (703)
|.||||||.|.| +-+.-..+|.-+. +.-.-++|.|||+ |+-++..|+. |
T Consensus 292 pGVLFIDEvHmL-----------DIE~FsFlnrAlE------se~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHML-----------DIECFSFLNRALE------SELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhh-----------hHHHHHHHHHHhh------cccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 788999998887 2233334444332 1222377788885 5566667766 5
Q ss_pred cceeeeecCCChhhHHHHHHHHhcCCCCCcc-ccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 005304 392 FDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (703)
Q Consensus 392 fdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~ 470 (703)
+ ..|...+++.++.++|++.++....+.-+ ..++.|+....--|-+---+|+.-|...|.++++..|..+|+++|.+-
T Consensus 353 l-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 353 L-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred e-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 5 36778888999999999999877655432 337778877777778888899999999999999999999999999875
Q ss_pred HH
Q 005304 471 IV 472 (703)
Q Consensus 471 v~ 472 (703)
++
T Consensus 432 F~ 433 (450)
T COG1224 432 FL 433 (450)
T ss_pred Hh
Confidence 43
No 137
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.43 E-value=9.1e-13 Score=142.95 Aligned_cols=224 Identities=21% Similarity=0.283 Sum_probs=141.3
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEe--
Q 005304 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSI-- 295 (703)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-------~~pfi~i-- 295 (703)
.+...|++|+|++++|..|...+ .+|. ..|+||.||+|||||++||+++.-+ +.||...
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~---~~p~---------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNV---IDPK---------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhc---cCCC---------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 44678999999999998776544 2332 2489999999999999999997754 2344300
Q ss_pred ----echhHHHHH-------------------hhhhhhHH------HHHHHHHH---------hcCCeEEEEcCcccccc
Q 005304 296 ----SGSEFVEMF-------------------VGVGASRV------RDLFKKAK---------ENAPCIVFVDEIDAVGR 337 (703)
Q Consensus 296 ----s~se~~~~~-------------------~G~~~~~i------r~lF~~A~---------~~aP~ILfIDEID~L~~ 337 (703)
.|++..... .|.+..++ ...|.... +....+||||||+.+.
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~- 157 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD- 157 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC-
Confidence 011111000 11122211 11122111 1123699999999982
Q ss_pred cCCCCCCCCChHHHHHHHHHHhhhcC---------c--cCCCCeEEEEecCCcc-cccccccCCCccceeeeecCCC-hh
Q 005304 338 QRGTGIGGGNDEREQTLNQLLTEMDG---------F--EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVPD-IR 404 (703)
Q Consensus 338 ~r~~~~~~~~~e~~~~l~~LL~~ld~---------~--~~~~~ViVIaaTN~p~-~LD~aLlRpgRfdr~I~i~~Pd-~~ 404 (703)
.. +...|+..|+. . ..+..+++|++.|..+ .+.++++. ||..++.+..|+ .+
T Consensus 158 ----------~~---~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~ 222 (350)
T CHL00081 158 ----------DH---LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPE 222 (350)
T ss_pred ----------HH---HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChH
Confidence 22 33444444432 1 1234688999888655 68899999 999999999997 58
Q ss_pred hHHHHHHHHhcCC--C-----------------------------CCccc-c-HHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005304 405 GRTEILKVHGSNK--K-----------------------------FDADV-S-LDVIAMRTPGFSGADLANLLNEAAILA 451 (703)
Q Consensus 405 eR~~IL~~~l~~~--~-----------------------------l~~dv-d-l~~lA~~t~G~sgadL~~lv~eAa~~A 451 (703)
.+.+|++...... . +++++ + +..++..+.--+++--..+++-|...|
T Consensus 223 ~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~A 302 (350)
T CHL00081 223 LRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALA 302 (350)
T ss_pred HHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHH
Confidence 8999998753211 0 00000 0 223333343335666667888999999
Q ss_pred HHhCCCCcCHHHHHHHHHHHHcCcC
Q 005304 452 GRRGKAAISSKEIDDSIDRIVAGME 476 (703)
Q Consensus 452 ~r~~~~~It~~di~~Al~~v~~g~~ 476 (703)
+-+|+..|+.+|+..+..-++..-.
T Consensus 303 al~GR~~V~pdDv~~~a~~vL~HR~ 327 (350)
T CHL00081 303 AFEGRTEVTPKDIFKVITLCLRHRL 327 (350)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999987776543
No 138
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.43 E-value=4.2e-12 Score=130.29 Aligned_cols=193 Identities=21% Similarity=0.370 Sum_probs=131.2
Q ss_pred ccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechh
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se 299 (703)
....++.+++++|++.+|+.|.+....+-. ..+..++||+|++|||||+++|++..+. |..++.+.-.+
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 345678999999999999998886654332 2346689999999999999999998865 78899988776
Q ss_pred HHHHHhhhhhhHHHHHHHHHHh-cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCc--cCCCCeEEEEec
Q 005304 300 FVEMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--EGNTGIIVIAAT 376 (703)
Q Consensus 300 ~~~~~~G~~~~~ir~lF~~A~~-~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~--~~~~~ViVIaaT 376 (703)
+.. +.++++..+. ..+-|||+|++- + ++.+.....|-..|||- ..+.+|++.||+
T Consensus 91 L~~---------l~~l~~~l~~~~~kFIlf~DDLs-F------------e~~d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 91 LGD---------LPELLDLLRDRPYKFILFCDDLS-F------------EEGDTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred hcc---------HHHHHHHHhcCCCCEEEEecCCC-C------------CCCcHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 643 4556666543 345799999863 2 11222334455555553 335689999999
Q ss_pred CCccccccccc----------C-----------CCccceeeeecCCChhhHHHHHHHHhcCCCCCccc-c----HHHHHH
Q 005304 377 NRADILDSALL----------R-----------PGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV-S----LDVIAM 430 (703)
Q Consensus 377 N~p~~LD~aLl----------R-----------pgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dv-d----l~~lA~ 430 (703)
|+-+.+.+... . ..||...+.|..||.++-.+|++.++....+..+. . ....|.
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWAL 228 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 97543332111 1 13999999999999999999999999766554331 1 222334
Q ss_pred hCCCCcHHHHHHHHH
Q 005304 431 RTPGFSGADLANLLN 445 (703)
Q Consensus 431 ~t~G~sgadL~~lv~ 445 (703)
...|.||+-..+.++
T Consensus 229 ~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 229 RRGGRSGRTARQFID 243 (249)
T ss_pred HcCCCCHHHHHHHHH
Confidence 444556655444443
No 139
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.43 E-value=1.9e-13 Score=152.01 Aligned_cols=217 Identities=25% Similarity=0.404 Sum_probs=143.3
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHH---hcCCCEEEeechhHHH
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGSEFVE 302 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~---e~~~pfi~is~se~~~ 302 (703)
...+|+||+|.+++..++.+.+...... +-.|||.|++||||..+|+++-+ +.+-||+.+||..+.+
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~A~t----------dstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRIAKT----------DSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhhcCC----------CCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 3568999999999999888888765443 33899999999999999999955 4578999999987664
Q ss_pred HH-------------hhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc--Cc---
Q 005304 303 MF-------------VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GF--- 364 (703)
Q Consensus 303 ~~-------------~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~--- 364 (703)
.. .|....--..+|+.|... .||+|||..+ +...+..+...|++-+ ..
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-----------pl~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-----------CHHHHHHHHHHHhhceEEecCCC
Confidence 32 222222234567776444 7999999888 3344445555554421 11
Q ss_pred -cCCCCeEEEEecCCc--ccccccccCCCccce--eeeecCCChhhHHHHH--------HHHhcCCC-----CCccccHH
Q 005304 365 -EGNTGIIVIAATNRA--DILDSALLRPGRFDR--QVTVDVPDIRGRTEIL--------KVHGSNKK-----FDADVSLD 426 (703)
Q Consensus 365 -~~~~~ViVIaaTN~p--~~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~IL--------~~~l~~~~-----l~~dvdl~ 426 (703)
....+|.||||||+. +.+...-+|...|.| ++.+..|..++|.+-+ +.+.++.+ ++++.-..
T Consensus 376 ~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~ 455 (560)
T COG3829 376 KPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALAL 455 (560)
T ss_pred CceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHH
Confidence 112369999999972 344444445555555 8889999999997733 22222211 33333223
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHH-HHHH
Q 005304 427 VIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID-DSID 469 (703)
Q Consensus 427 ~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~-~Al~ 469 (703)
.+....+| +.++|+|++.++...+. ....|+.+|+. .++.
T Consensus 456 L~~y~WPG-NVRELeNviER~v~~~~--~~~~I~~~~lp~~~l~ 496 (560)
T COG3829 456 LLRYDWPG-NVRELENVIERAVNLVE--SDGLIDADDLPAFALE 496 (560)
T ss_pred HHhCCCCc-hHHHHHHHHHHHHhccC--Ccceeehhhcchhhhc
Confidence 33444565 78999999999987553 33457777776 4443
No 140
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.42 E-value=1.2e-12 Score=154.88 Aligned_cols=165 Identities=20% Similarity=0.293 Sum_probs=114.6
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH-----HHhh
Q 005304 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-----MFVG 306 (703)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~-----~~~G 306 (703)
.|+|++++++.+.+.+...+..-. -..++...+||+||||||||.+|+++|..++.+|+.++|+++.+ .+.|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~---~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG---HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc---CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 489999999999998876432110 00122246999999999999999999999999999999998854 3344
Q ss_pred hhhhHH-----HHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCc--c-------CCCCeEE
Q 005304 307 VGASRV-----RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--E-------GNTGIIV 372 (703)
Q Consensus 307 ~~~~~i-----r~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~--~-------~~~~ViV 372 (703)
.....+ ..+.+..+.+..|||||||||.+. ..+.+.|+..||.- . .-.++++
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~--------------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~ii 601 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH--------------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVL 601 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhh--------------HHHHHHHHHHHhcCeeecCCCceecCCCcEE
Confidence 322111 123334455666999999999982 23555566655521 1 1136889
Q ss_pred EEecCCc-------------------------ccccccccCCCccceeeeecCCChhhHHHHHHHHhc
Q 005304 373 IAATNRA-------------------------DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (703)
Q Consensus 373 IaaTN~p-------------------------~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~ 415 (703)
|+|||.. ..+.|.++. |+|.+|.|++.+.++..+|+...+.
T Consensus 602 I~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 602 VMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred EEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 9999932 124466666 9999999999999998888876653
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.40 E-value=6.7e-12 Score=149.46 Aligned_cols=165 Identities=23% Similarity=0.351 Sum_probs=116.5
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCCCCc-eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH-----H
Q 005304 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK-GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-----F 304 (703)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~-gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~-----~ 304 (703)
+.|+|++++++.+.+.+...+..-. ...-|. .+||+||||||||++|+++|..++.+++.++++++.+. +
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~----~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~l 529 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLG----NPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRL 529 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCC----CCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHH
Confidence 4688999999988888765322100 001244 48999999999999999999999999999999998652 2
Q ss_pred hhhhh-----hHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc---------CCCCe
Q 005304 305 VGVGA-----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------GNTGI 370 (703)
Q Consensus 305 ~G~~~-----~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~---------~~~~V 370 (703)
.|... .....+.+..+.+..+||+|||||.+ +. ...+.|+..+|.-. .-.++
T Consensus 530 ig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----------~~---~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ 595 (731)
T TIGR02639 530 IGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----------HP---DIYNILLQVMDYATLTDNNGRKADFRNV 595 (731)
T ss_pred hcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----------CH---HHHHHHHHhhccCeeecCCCcccCCCCC
Confidence 33221 12233445555667789999999987 22 34555665555321 12357
Q ss_pred EEEEecCCcc-------------------------cccccccCCCccceeeeecCCChhhHHHHHHHHhc
Q 005304 371 IVIAATNRAD-------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (703)
Q Consensus 371 iVIaaTN~p~-------------------------~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~ 415 (703)
++|+|||... .+.|.++. |+|.+|.|.+.+.++..+|++..+.
T Consensus 596 iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 596 ILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred EEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 8999998631 14556665 9999999999999999999987764
No 142
>PRK09087 hypothetical protein; Validated
Probab=99.39 E-value=1.2e-11 Score=127.29 Aligned_cols=204 Identities=18% Similarity=0.176 Sum_probs=130.6
Q ss_pred ccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
...+..+|++++.-+.-...+ ..+..+..+ ....++|+||+|+|||||+++++...++. +++..+|..
T Consensus 13 ~~~~~~~~~~Fi~~~~N~~a~-~~l~~~~~~---------~~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~ 80 (226)
T PRK09087 13 SHDPAYGRDDLLVTESNRAAV-SLVDHWPNW---------PSPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGS 80 (226)
T ss_pred CCCCCCChhceeecCchHHHH-HHHHhcccC---------CCCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcch
Confidence 345567899998644322222 222221111 12349999999999999999999887654 555544443
Q ss_pred HHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccc-
Q 005304 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI- 381 (703)
Q Consensus 303 ~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~- 381 (703)
.+. ..... .+|+|||+|.+.. . +..+..+++.+ ..+.+.+||+++..|..
T Consensus 81 ~~~-----------~~~~~---~~l~iDDi~~~~~--------~----~~~lf~l~n~~---~~~g~~ilits~~~p~~~ 131 (226)
T PRK09087 81 DAA-----------NAAAE---GPVLIEDIDAGGF--------D----ETGLFHLINSV---RQAGTSLLMTSRLWPSSW 131 (226)
T ss_pred HHH-----------Hhhhc---CeEEEECCCCCCC--------C----HHHHHHHHHHH---HhCCCeEEEECCCChHHh
Confidence 222 11111 3788999998721 1 11233333322 22445677777665543
Q ss_pred --ccccccCCCccc--eeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC
Q 005304 382 --LDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 456 (703)
Q Consensus 382 --LD~aLlRpgRfd--r~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~ 456 (703)
..+.|++ ||. ..+++..|+.+.|.++++.++....+. ++..++.|+++..+ +.+.+..+++.....+...+
T Consensus 132 ~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~- 207 (226)
T PRK09087 132 NVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK- 207 (226)
T ss_pred ccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-
Confidence 3577888 886 488999999999999999998765543 23337788888774 67778877777766665544
Q ss_pred CCcCHHHHHHHHHHH
Q 005304 457 AAISSKEIDDSIDRI 471 (703)
Q Consensus 457 ~~It~~di~~Al~~v 471 (703)
..||...+++++..+
T Consensus 208 ~~it~~~~~~~l~~~ 222 (226)
T PRK09087 208 SRITRALAAEVLNEM 222 (226)
T ss_pred CCCCHHHHHHHHHhh
Confidence 568999999888764
No 143
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.39 E-value=2.1e-12 Score=138.38 Aligned_cols=207 Identities=15% Similarity=0.145 Sum_probs=131.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH--HhhhhhhH----------HHHHHHHHHhcCCeEEEEcC
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM--FVGVGASR----------VRDLFKKAKENAPCIVFVDE 331 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~--~~G~~~~~----------ir~lF~~A~~~aP~ILfIDE 331 (703)
.++|||.||||||||++|+.+|.+++.|++.++++...+. ++|...-. ....+..|. ..+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEech
Confidence 3479999999999999999999999999999999876654 34432110 112344443 3468999999
Q ss_pred cccccccCCCCCCCCChHHHHHHHHHHhh-----hc----CccCCCCeEEEEecCCcc------------cccccccCCC
Q 005304 332 IDAVGRQRGTGIGGGNDEREQTLNQLLTE-----MD----GFEGNTGIIVIAATNRAD------------ILDSALLRPG 390 (703)
Q Consensus 332 ID~L~~~r~~~~~~~~~e~~~~l~~LL~~-----ld----~~~~~~~ViVIaaTN~p~------------~LD~aLlRpg 390 (703)
||.. .......++.+|+. +. .+.....+.||||+|..+ .++++++.
T Consensus 143 in~a-----------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD-- 209 (327)
T TIGR01650 143 YDAG-----------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD-- 209 (327)
T ss_pred hhcc-----------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--
Confidence 9987 23344566666652 11 122445799999999854 46788998
Q ss_pred ccceeeeecCCChhhHHHHHHHHhcCCCCCc-cc---cHHHHHHh----------CCCCcHHHHHHHHHHHHHHHHHhCC
Q 005304 391 RFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DV---SLDVIAMR----------TPGFSGADLANLLNEAAILAGRRGK 456 (703)
Q Consensus 391 Rfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dv---dl~~lA~~----------t~G~sgadL~~lv~eAa~~A~r~~~ 456 (703)
||-.++.++.|+.++-.+|+........-.. +. .+..+|.. ..|+|++.+..+.+.+... +
T Consensus 210 RF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~~~~~f----~- 284 (327)
T TIGR01650 210 RWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAENAEIF----D- 284 (327)
T ss_pred heeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHHHHHhh----C-
Confidence 9987889999999999999987654322000 00 01222222 2345677666665554433 1
Q ss_pred CCcCHHHHHHHHHHHHcCcCCcccccCCcchhhhHHHHHHHHHHh
Q 005304 457 AAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGT 501 (703)
Q Consensus 457 ~~It~~di~~Al~~v~~g~~~~~~~~~~~~~~va~hEaGhAlv~~ 501 (703)
.++..|++..+... -++..+.++||.-+.+.+.
T Consensus 285 -----~~~~~a~~~~~~n~-------~~~~er~~~~e~~q~~f~~ 317 (327)
T TIGR01650 285 -----HDIALAFRLTFLNK-------CDELERPTVAEFFQRAFGE 317 (327)
T ss_pred -----ccHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHcCC
Confidence 24566665543221 1223446777766665443
No 144
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.39 E-value=4.7e-12 Score=137.22 Aligned_cols=215 Identities=22% Similarity=0.303 Sum_probs=136.7
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCEE--------
Q 005304 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFF-------- 293 (703)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-------~~pfi-------- 293 (703)
.|..|+|++++|..|.-.+ -+|. ..+++|.|+||+|||++++++++-. ++|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~---~~~~---------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNV---IDPK---------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHh---cCCC---------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 5899999999998765332 1221 2379999999999999999999765 33332
Q ss_pred -Eeechh----------------HHHHHhhhhhhHHH------------------HHHHHHHhcCCeEEEEcCccccccc
Q 005304 294 -SISGSE----------------FVEMFVGVGASRVR------------------DLFKKAKENAPCIVFVDEIDAVGRQ 338 (703)
Q Consensus 294 -~is~se----------------~~~~~~G~~~~~ir------------------~lF~~A~~~aP~ILfIDEID~L~~~ 338 (703)
..+|.. |.+.-.+.+..++- .++.+| ...+||||||+.+.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L~-- 144 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLLE-- 144 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhCC--
Confidence 111111 01111111111111 112222 23699999999982
Q ss_pred CCCCCCCCChHHHHHHHHHHhhhcCc-----------cCCCCeEEEEecCCcc-cccccccCCCccceeeeecCCCh-hh
Q 005304 339 RGTGIGGGNDEREQTLNQLLTEMDGF-----------EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVPDI-RG 405 (703)
Q Consensus 339 r~~~~~~~~~e~~~~l~~LL~~ld~~-----------~~~~~ViVIaaTN~p~-~LD~aLlRpgRfdr~I~i~~Pd~-~e 405 (703)
.. +...|+..|+.- ..+..+++|++.|..+ .+.++++. ||..++.++.|+. ++
T Consensus 145 ---------~~---~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~ee 210 (337)
T TIGR02030 145 ---------DH---LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVEL 210 (337)
T ss_pred ---------HH---HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHH
Confidence 22 334444444321 1234688999988655 68899999 9999999999976 88
Q ss_pred HHHHHHHHhcCC-------------------------------CCCccc--cHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 005304 406 RTEILKVHGSNK-------------------------------KFDADV--SLDVIAMRTPGFSGADLANLLNEAAILAG 452 (703)
Q Consensus 406 R~~IL~~~l~~~-------------------------------~l~~dv--dl~~lA~~t~G~sgadL~~lv~eAa~~A~ 452 (703)
|.+|++...... .+++++ -+..++..+..-+.+--..+++-|...|.
T Consensus 211 r~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aa 290 (337)
T TIGR02030 211 RVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAA 290 (337)
T ss_pred HHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHH
Confidence 899998743210 011110 02233444443355666788999999999
Q ss_pred HhCCCCcCHHHHHHHHHHHHcC
Q 005304 453 RRGKAAISSKEIDDSIDRIVAG 474 (703)
Q Consensus 453 r~~~~~It~~di~~Al~~v~~g 474 (703)
.+|+..|+.+|+..+..-++..
T Consensus 291 l~GR~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 291 FEGRTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred HcCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998877654
No 145
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=7.6e-12 Score=145.57 Aligned_cols=212 Identities=19% Similarity=0.303 Sum_probs=144.4
Q ss_pred cccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE-------
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS------- 294 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~------- 294 (703)
.+++++.+|+||+|++.+++.|...+.. .+.|+.+|||||+|+|||++|+++|..+.+.-..
T Consensus 8 ~~kyRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 8 ARKYRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 4567788999999999999988887752 2456689999999999999999999987542110
Q ss_pred --eechhHHHH-------Hhh---hhhhHHHHHHHHHHhc----CCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHH
Q 005304 295 --ISGSEFVEM-------FVG---VGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (703)
Q Consensus 295 --is~se~~~~-------~~G---~~~~~ir~lF~~A~~~----aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL 358 (703)
-+|..+.+. +.+ .+...++++.+.+... ..-|++|||+|.+. ....+.|+
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------------~~a~naLL 142 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------------QAAFNAFL 142 (614)
T ss_pred cchHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------------HHHHHHHH
Confidence 011111110 011 1234577777666432 23499999999982 23567888
Q ss_pred hhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCcc-ccHHHHHHhCCCCcH
Q 005304 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSG 437 (703)
Q Consensus 359 ~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~lA~~t~G~sg 437 (703)
..|+.. ....++|.+|+.+..+-+.+++ |+ ..++|..++..+....++..+.+.++..+ ..+..|+..+.| +.
T Consensus 143 K~LEep--p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dl 216 (614)
T PRK14971 143 KTLEEP--PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GM 216 (614)
T ss_pred HHHhCC--CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888854 3456677777777888889988 76 46899999999988888887766555433 236778877754 67
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 438 adL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
+++.++++.....+ +.. |+.+++.+.+
T Consensus 217 r~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 217 RDALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 77777776655444 222 7766655443
No 146
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.35 E-value=1.1e-11 Score=114.77 Aligned_cols=123 Identities=40% Similarity=0.629 Sum_probs=81.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHHhhhhhhH---HHHHHHHHHhcCCeEEEEcCcccccc
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVGASR---VRDLFKKAKENAPCIVFVDEIDAVGR 337 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~~G~~~~~---ir~lF~~A~~~aP~ILfIDEID~L~~ 337 (703)
.++++++||||||||++++.++... +.+++++++.++........... ....+.......+++|+|||++.+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~- 97 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS- 97 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh-
Confidence 3479999999999999999999998 89999999988765433222211 1222333445668999999999871
Q ss_pred cCCCCCCCCChHHHHHHHHHHhhhcCc-cCCCCeEEEEecCCcc--cccccccCCCccceeeeec
Q 005304 338 QRGTGIGGGNDEREQTLNQLLTEMDGF-EGNTGIIVIAATNRAD--ILDSALLRPGRFDRQVTVD 399 (703)
Q Consensus 338 ~r~~~~~~~~~e~~~~l~~LL~~ld~~-~~~~~ViVIaaTN~p~--~LD~aLlRpgRfdr~I~i~ 399 (703)
......+.+++...... ..+.++.+|+++|... .+++.+.+ ||+.++.++
T Consensus 98 ----------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 ----------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred ----------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 11222223333322111 1245788999998876 67777777 898666664
No 147
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.35 E-value=8.5e-12 Score=146.15 Aligned_cols=213 Identities=21% Similarity=0.313 Sum_probs=137.8
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc--------------------
Q 005304 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------------------- 288 (703)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-------------------- 288 (703)
.|.+|+|++.++..+.-.. .++. ..||||+|+||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~a---v~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNA---VDPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHh---hCCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 5889999999997665333 2221 1379999999999999999999876
Q ss_pred ---------------CCCEEEeechhHHHHHhhhhh--hHH--------HHHHHHHHhcCCeEEEEcCcccccccCCCCC
Q 005304 289 ---------------GVPFFSISGSEFVEMFVGVGA--SRV--------RDLFKKAKENAPCIVFVDEIDAVGRQRGTGI 343 (703)
Q Consensus 289 ---------------~~pfi~is~se~~~~~~G~~~--~~i--------r~lF~~A~~~aP~ILfIDEID~L~~~r~~~~ 343 (703)
..||+.+.++...+.++|... ..+ ..++..| ...|||||||+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~------- 139 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLD------- 139 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCC-------
Confidence 357777766654444444210 000 1112221 22599999999982
Q ss_pred CCCChHHHHHHHHHHhhhcCc-----------cCCCCeEEEEecCCc-ccccccccCCCccceeeeecCCC-hhhHHHHH
Q 005304 344 GGGNDEREQTLNQLLTEMDGF-----------EGNTGIIVIAATNRA-DILDSALLRPGRFDRQVTVDVPD-IRGRTEIL 410 (703)
Q Consensus 344 ~~~~~e~~~~l~~LL~~ld~~-----------~~~~~ViVIaaTN~p-~~LD~aLlRpgRfdr~I~i~~Pd-~~eR~~IL 410 (703)
..+++.|+..|+.- ....++++|+|+|.. ..+.++|+. ||+.+|.++.|. .+++.+++
T Consensus 140 -------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il 210 (633)
T TIGR02442 140 -------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEII 210 (633)
T ss_pred -------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHH
Confidence 23455555555421 112468999999964 368889999 999888888774 56677777
Q ss_pred HHHhcC-------------------------------CCCCccccHHHHHHhC--CCC-cHHHHHHHHHHHHHHHHHhCC
Q 005304 411 KVHGSN-------------------------------KKFDADVSLDVIAMRT--PGF-SGADLANLLNEAAILAGRRGK 456 (703)
Q Consensus 411 ~~~l~~-------------------------------~~l~~dvdl~~lA~~t--~G~-sgadL~~lv~eAa~~A~r~~~ 456 (703)
+..... ..+.++ .+..++..+ .|. +.+-...+++-|...|..+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~-~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr 289 (633)
T TIGR02442 211 RRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDS-LIRFISELCIEFGVDGHRADIVMARAARALAALDGR 289 (633)
T ss_pred HHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC
Confidence 653220 011111 122222221 234 345556788889899999999
Q ss_pred CCcCHHHHHHHHHHHHc
Q 005304 457 AAISSKEIDDSIDRIVA 473 (703)
Q Consensus 457 ~~It~~di~~Al~~v~~ 473 (703)
..|+.+|+.+|+.-++.
T Consensus 290 ~~V~~~Dv~~A~~lvL~ 306 (633)
T TIGR02442 290 RRVTAEDVREAAELVLP 306 (633)
T ss_pred CcCCHHHHHHHHHHHhh
Confidence 99999999999988773
No 148
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.2e-10 Score=136.12 Aligned_cols=166 Identities=26% Similarity=0.389 Sum_probs=125.8
Q ss_pred cCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEE
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFF 293 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~pfi 293 (703)
....-.+|-|+|.++.++++.+++..-. ..+-+|.|+||+|||.++..+|.+. +..++
T Consensus 163 ~Ar~gklDPvIGRd~EI~r~iqIL~RR~------------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~ 230 (786)
T COG0542 163 LAREGKLDPVIGRDEEIRRTIQILSRRT------------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY 230 (786)
T ss_pred HHhcCCCCCCcChHHHHHHHHHHHhccC------------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE
Confidence 3456689999999998887777664311 2257899999999999999999865 55678
Q ss_pred EeechhHHH--HHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeE
Q 005304 294 SISGSEFVE--MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGII 371 (703)
Q Consensus 294 ~is~se~~~--~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~Vi 371 (703)
.++.+.++. +|.|+.+++++.+.+..++..+.||||||||.+.+..++. +. .-...|-|--.+ .+..+.
T Consensus 231 sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~---G~--a~DAaNiLKPaL----ARGeL~ 301 (786)
T COG0542 231 SLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATE---GG--AMDAANLLKPAL----ARGELR 301 (786)
T ss_pred EecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccc---cc--ccchhhhhHHHH----hcCCeE
Confidence 888888774 7899999999999999998889999999999996543321 10 111223222222 256789
Q ss_pred EEEecCCcc-----cccccccCCCccceeeeecCCChhhHHHHHHHH
Q 005304 372 VIAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH 413 (703)
Q Consensus 372 VIaaTN~p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~ 413 (703)
+|+||+..+ .=|+||-| ||. .|.+..|+.++-..||+-.
T Consensus 302 ~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 302 CIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred EEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHH
Confidence 999997543 35899999 995 7899999999999999743
No 149
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.32 E-value=5.5e-12 Score=140.34 Aligned_cols=212 Identities=24% Similarity=0.330 Sum_probs=134.9
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHH---hcCCCEEEeechhHHHH
Q 005304 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGSEFVEM 303 (703)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~---e~~~pfi~is~se~~~~ 303 (703)
...+.+++|.+.+.+++.+.+..+..... .|||+|++||||.++||+|-. ..+.||+.+||..+.+.
T Consensus 137 ~~~~~~liG~S~am~~l~~~i~kvA~s~a----------~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 137 KSLGGELVGESPAMQQLRRLIAKVAPSDA----------SVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccccCCceecCHHHHHHHHHHHHHhCCCC----------CEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 35688999999999999999988776654 799999999999999999955 44679999999866542
Q ss_pred -----Hhhhhh-------hHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhh--cCcc----
Q 005304 304 -----FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM--DGFE---- 365 (703)
Q Consensus 304 -----~~G~~~-------~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~l--d~~~---- 365 (703)
+.|... .+-...|+.|.. ..||||||..+ .-+.+.-+...|++= ....
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~~~~ 272 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGGNKP 272 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCCCcc
Confidence 223111 112345666644 48999999888 233333444444321 1121
Q ss_pred CCCCeEEEEecCCc--ccccccccCCCccce--eeeecCCChhhHHHHH----HHH----hcCCC-CCccccHHHHHHhC
Q 005304 366 GNTGIIVIAATNRA--DILDSALLRPGRFDR--QVTVDVPDIRGRTEIL----KVH----GSNKK-FDADVSLDVIAMRT 432 (703)
Q Consensus 366 ~~~~ViVIaaTN~p--~~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~IL----~~~----l~~~~-l~~dvdl~~lA~~t 432 (703)
.+-+|.||+|||+. +.+....+|...|.| ++.+..|..++|.+-+ +++ ....+ -...++.+.++...
T Consensus 273 i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~ 352 (464)
T COG2204 273 IKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALL 352 (464)
T ss_pred cceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 13369999999962 334444444444444 8899999999998732 222 22221 12233333333332
Q ss_pred C---CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Q 005304 433 P---GFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (703)
Q Consensus 433 ~---G~sgadL~~lv~eAa~~A~r~~~~~It~~di~ 465 (703)
. --+.++|+|++++++..+ ....|+.+++.
T Consensus 353 ~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l~ 385 (464)
T COG2204 353 AYDWPGNVRELENVVERAVILS---EGPEIEVEDLP 385 (464)
T ss_pred hCCCChHHHHHHHHHHHHHhcC---Cccccchhhcc
Confidence 2 235677888888877666 34456665554
No 150
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.30 E-value=9.9e-12 Score=136.82 Aligned_cols=200 Identities=26% Similarity=0.393 Sum_probs=130.3
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHH---hcCCCEEEeechhHHHH
Q 005304 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGSEFVEM 303 (703)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~---e~~~pfi~is~se~~~~ 303 (703)
...+.+|+|.+.+..++.+.++.....+. .|||.|++||||..+||+|-. ..+.||+++||+.+.+.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd~----------tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSDS----------TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCCC----------eEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 56788999999999999999988766543 799999999999999999954 55789999999887754
Q ss_pred H-----hhhhhh-------HHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhh--hcCccC---
Q 005304 304 F-----VGVGAS-------RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE--MDGFEG--- 366 (703)
Q Consensus 304 ~-----~G~~~~-------~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~--ld~~~~--- 366 (703)
. .|.-.. .-+.-|+.|.. ..||+|||..+ .-+.+..+...|++ ++....
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~~r~ 354 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGGDRT 354 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCC---CeEechhhccC-----------CHHHHHHHHHHHhhcceeecCCCce
Confidence 3 221110 11223444433 48999999887 33344444444443 222222
Q ss_pred -CCCeEEEEecCCc--ccccccccCCCccce--eeeecCCChhhHHHH--------HHHHhcCCCC-----CccccHHHH
Q 005304 367 -NTGIIVIAATNRA--DILDSALLRPGRFDR--QVTVDVPDIRGRTEI--------LKVHGSNKKF-----DADVSLDVI 428 (703)
Q Consensus 367 -~~~ViVIaaTN~p--~~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~I--------L~~~l~~~~l-----~~dvdl~~l 428 (703)
+-+|.||||||+- +.+-..-.|...|.| ++.+.+|..++|..- ++......+. +++ .++.+
T Consensus 355 ikVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~-Al~~L 433 (550)
T COG3604 355 IKVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAE-ALELL 433 (550)
T ss_pred eEEEEEEEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHH-HHHHH
Confidence 2269999999972 111111222333344 778889999998652 2222222222 222 24555
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHH
Q 005304 429 AMRTPGFSGADLANLLNEAAILA 451 (703)
Q Consensus 429 A~~t~G~sgadL~~lv~eAa~~A 451 (703)
.....--+.++|+|++++|+..|
T Consensus 434 ~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 434 SSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HcCCCCCcHHHHHHHHHHHHHHh
Confidence 55544457899999999999988
No 151
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.30 E-value=8.6e-12 Score=142.63 Aligned_cols=213 Identities=21% Similarity=0.284 Sum_probs=128.4
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHh-----------cCCCEEEee
Q 005304 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE-----------AGVPFFSIS 296 (703)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e-----------~~~pfi~is 296 (703)
.+|++++|.+.+.+.+.+.+..+.... .+|||+|++||||+++|+++-.. .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~----------~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSS----------AAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCC----------CcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 479999999999999998887654332 37999999999999999999665 468999999
Q ss_pred chhHHHH-----Hhhhh------h--hHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc-
Q 005304 297 GSEFVEM-----FVGVG------A--SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD- 362 (703)
Q Consensus 297 ~se~~~~-----~~G~~------~--~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld- 362 (703)
|+.+.+. ..|.. + ..-..+|+.|. ...||||||+.+ +...+..+..+|.+-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----------p~~~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEM-----------PLPLQTRLLRVLEEKEV 351 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhC-----------CHHHHHHHHhhhhcCeE
Confidence 9876432 22211 1 01123566553 348999999998 3334444444443311
Q ss_pred -Cc----cCCCCeEEEEecCCcc--cccccccCCCccce--eeeecCCChhhHHH----HHHHHhcC----C--CCCccc
Q 005304 363 -GF----EGNTGIIVIAATNRAD--ILDSALLRPGRFDR--QVTVDVPDIRGRTE----ILKVHGSN----K--KFDADV 423 (703)
Q Consensus 363 -~~----~~~~~ViVIaaTN~p~--~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~----IL~~~l~~----~--~l~~dv 423 (703)
.. ....++.+|++||..- .+....+|+..|.+ .+.+.+|..++|.+ ++++++.+ . .+..+.
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a 431 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAAL 431 (538)
T ss_pred EecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 11 1123578999998631 22222222222222 57889999999876 22333322 1 222221
Q ss_pred c------HHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Q 005304 424 S------LDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEI 464 (703)
Q Consensus 424 d------l~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di 464 (703)
- +..|.....-.+.++|+|++++++..+.......|+.+++
T Consensus 432 ~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 432 RQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred HHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 0 1233333333478899999999887653322345555554
No 152
>PHA02244 ATPase-like protein
Probab=99.30 E-value=7.1e-11 Score=128.06 Aligned_cols=148 Identities=23% Similarity=0.359 Sum_probs=94.0
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHH--h
Q 005304 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF--V 305 (703)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~--~ 305 (703)
+.+..+.+..........+..++... .+|||+||||||||++|+++|..++.||+.+++. .+.+ .
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~~-----------~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~ 160 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNAN-----------IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELK 160 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhcC-----------CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhc
Confidence 33444444444445555555555443 3799999999999999999999999999999853 2211 1
Q ss_pred hh--hhhHHH-HHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhh-----hc-CccCCCCeEEEEec
Q 005304 306 GV--GASRVR-DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE-----MD-GFEGNTGIIVIAAT 376 (703)
Q Consensus 306 G~--~~~~ir-~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~-----ld-~~~~~~~ViVIaaT 376 (703)
|. ...... .-|-.|. ...++|+||||+.+ .......++.++.. .+ ......++.+|+|+
T Consensus 161 G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a-----------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATs 228 (383)
T PHA02244 161 GFIDANGKFHETPFYEAF-KKGGLFFIDEIDAS-----------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAG 228 (383)
T ss_pred ccccccccccchHHHHHh-hcCCEEEEeCcCcC-----------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEee
Confidence 11 000111 1222332 23579999999987 23344455555532 11 11234678999999
Q ss_pred CCc-----------ccccccccCCCccceeeeecCCCh
Q 005304 377 NRA-----------DILDSALLRPGRFDRQVTVDVPDI 403 (703)
Q Consensus 377 N~p-----------~~LD~aLlRpgRfdr~I~i~~Pd~ 403 (703)
|.+ ..|++++++ ||- .|+++.|+.
T Consensus 229 N~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~ 263 (383)
T PHA02244 229 NTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEK 263 (383)
T ss_pred CCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcH
Confidence 973 578999999 994 789999983
No 153
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.29 E-value=5.4e-11 Score=143.27 Aligned_cols=195 Identities=23% Similarity=0.312 Sum_probs=126.3
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCCCCce-EEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHH---
Q 005304 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKG-VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM--- 303 (703)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~g-vLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~--- 303 (703)
+.|+|++++.+.+.+.+...+..-.+ ...|.| +||+||||||||.+|+++|..+ ...++.+++++|.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~----~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLED----PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCC----CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 46899999999888888653321100 123555 7999999999999999999988 468999999998753
Q ss_pred ---------HhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc---------
Q 005304 304 ---------FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------- 365 (703)
Q Consensus 304 ---------~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~--------- 365 (703)
|+|.... ..+.+..+++.++||+|||||.. +.. +.+.|+..+|.-.
T Consensus 642 ~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-----------~~~---v~~~Llq~ld~g~l~d~~Gr~v 705 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-----------HPD---VLELFYQVFDKGVMEDGEGREI 705 (852)
T ss_pred ccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-----------CHH---HHHHHHHHhhcceeecCCCcEE
Confidence 2332221 12344456677899999999976 223 4444555554221
Q ss_pred CCCCeEEEEecCCcc-----------------------------cccccccCCCccceeeeecCCChhhHHHHHHHHhcC
Q 005304 366 GNTGIIVIAATNRAD-----------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN 416 (703)
Q Consensus 366 ~~~~ViVIaaTN~p~-----------------------------~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~ 416 (703)
.-.+.+||.|||... .+.|+++. |++ .|.|.+.+.++..+|+...+..
T Consensus 706 d~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 706 DFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred eccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 113689999998411 13456666 887 8899999999999998776543
Q ss_pred C--------CCCcccc---HHHHHHhCCC--CcHHHHHHHHHHHH
Q 005304 417 K--------KFDADVS---LDVIAMRTPG--FSGADLANLLNEAA 448 (703)
Q Consensus 417 ~--------~l~~dvd---l~~lA~~t~G--~sgadL~~lv~eAa 448 (703)
. ++.-.++ .+.|+....+ +-.+.|.++++.-.
T Consensus 783 l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 783 IARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 1 2221222 4455655432 34566666665543
No 154
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.28 E-value=1.8e-11 Score=139.94 Aligned_cols=214 Identities=21% Similarity=0.266 Sum_probs=131.8
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEeechhHHHH-
Q 005304 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM- 303 (703)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~se~~~~- 303 (703)
.+|++++|.+.+.+.+.+.+..+.... .+|||+|++||||+++|+++-.. .+.||+.++|..+.+.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~----------~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSD----------ATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCC----------CcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 679999999999999998887654332 37999999999999999999654 4689999999876432
Q ss_pred ----Hhhhhh--------hHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc--Cc----c
Q 005304 304 ----FVGVGA--------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GF----E 365 (703)
Q Consensus 304 ----~~G~~~--------~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~----~ 365 (703)
+.|... ..-..+|+.|. ...||||||+.+ +...+..+..+|.+-. .. .
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----------p~~~Q~~Ll~~L~~~~~~r~g~~~~ 344 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM-----------PLPLQTRLLRVLEEREVVRVGGTEP 344 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC-----------CHHHHHHHHHHHhcCcEEecCCCce
Confidence 222110 11234565553 348999999999 3334444444444311 11 1
Q ss_pred CCCCeEEEEecCCcc--cccccccCCCccce--eeeecCCChhhHHHH----HHHHhcC----C--CCCccccHHH----
Q 005304 366 GNTGIIVIAATNRAD--ILDSALLRPGRFDR--QVTVDVPDIRGRTEI----LKVHGSN----K--KFDADVSLDV---- 427 (703)
Q Consensus 366 ~~~~ViVIaaTN~p~--~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~I----L~~~l~~----~--~l~~dvdl~~---- 427 (703)
...++.+|++||..- .+....+|+..|.+ .+.+.+|..++|.+- +.+++.. . ++.++. +..
T Consensus 345 ~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a-~~~~~~~ 423 (526)
T TIGR02329 345 VPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAA-AQVLAGV 423 (526)
T ss_pred eeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHH-HHHhHHH
Confidence 123568999998632 23333333222333 578889999998762 2333322 1 222221 222
Q ss_pred ---HHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHH
Q 005304 428 ---IAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDD 466 (703)
Q Consensus 428 ---lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~ 466 (703)
|.....-.+.++|++++++++..+.......|+.+++..
T Consensus 424 ~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 424 ADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhh
Confidence 444433347789999999988776432335677777653
No 155
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.26 E-value=1.4e-10 Score=125.86 Aligned_cols=132 Identities=36% Similarity=0.460 Sum_probs=88.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhhHHHHH------HHHHHh--cCC--eEEEEcCcccc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDL------FKKAKE--NAP--CIVFVDEIDAV 335 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~~ir~l------F~~A~~--~aP--~ILfIDEID~L 335 (703)
++||.||||||||++|+.+|..++.+|+.++|..........+....... |..... ... +|+|+|||+..
T Consensus 45 ~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra 124 (329)
T COG0714 45 HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRA 124 (329)
T ss_pred CEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccC
Confidence 69999999999999999999999999999999865532211111111111 000000 001 49999999886
Q ss_pred cccCCCCCCCCChHHHHHHHHHHhhhcC----------ccCCCCeEEEEecC-----CcccccccccCCCccceeeeecC
Q 005304 336 GRQRGTGIGGGNDEREQTLNQLLTEMDG----------FEGNTGIIVIAATN-----RADILDSALLRPGRFDRQVTVDV 400 (703)
Q Consensus 336 ~~~r~~~~~~~~~e~~~~l~~LL~~ld~----------~~~~~~ViVIaaTN-----~p~~LD~aLlRpgRfdr~I~i~~ 400 (703)
... +.+.||..|+. +.-+..++||+|+| ....|++++++ ||...+.++.
T Consensus 125 -----------~p~---~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~y 188 (329)
T COG0714 125 -----------PPE---VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDY 188 (329)
T ss_pred -----------CHH---HHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCC
Confidence 233 44555555543 33456789999999 45578999999 9988999999
Q ss_pred CChhhHHHHHHHH
Q 005304 401 PDIRGRTEILKVH 413 (703)
Q Consensus 401 Pd~~eR~~IL~~~ 413 (703)
|+.++-..++..+
T Consensus 189 p~~~~e~~~i~~~ 201 (329)
T COG0714 189 PDSEEEERIILAR 201 (329)
T ss_pred CCchHHHHHHHHh
Confidence 9555444444333
No 156
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.26 E-value=2.8e-11 Score=132.62 Aligned_cols=200 Identities=28% Similarity=0.418 Sum_probs=128.8
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHH---h-cCCCEEEeechhHH
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---E-AGVPFFSISGSEFV 301 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~---e-~~~pfi~is~se~~ 301 (703)
....+++++|.+...+++++.+..+... ..+||++|++||||+++|+++.. . .+.||+.+||+.+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~ap~----------~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYAPS----------GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhCCC----------CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 3457999999999999888888663222 23799999999999999999943 3 47899999999886
Q ss_pred HHH-------------hhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhh-----cC
Q 005304 302 EMF-------------VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM-----DG 363 (703)
Q Consensus 302 ~~~-------------~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~l-----d~ 363 (703)
+.. .| ....-..+|+.|... +||+|||+.+ ..+.+..+..+|+.- .+
T Consensus 143 en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~L-----------P~~~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 143 ENLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRL-----------PPEGQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred cCHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhC-----------CHhHHHHHHHHHHcCceEecCC
Confidence 532 22 122334567776444 8999999998 344555555555542 11
Q ss_pred -ccCCCCeEEEEecCCcccccccccC-CCccce--eeeecCCChhhHHH--------HHHHHhcCCCCCcccc----HHH
Q 005304 364 -FEGNTGIIVIAATNRADILDSALLR-PGRFDR--QVTVDVPDIRGRTE--------ILKVHGSNKKFDADVS----LDV 427 (703)
Q Consensus 364 -~~~~~~ViVIaaTN~p~~LD~aLlR-pgRfdr--~I~i~~Pd~~eR~~--------IL~~~l~~~~l~~dvd----l~~ 427 (703)
-....+|.+|+|||. .++.+++. ...+.| .+.|.+|+.++|.. +++.++++.......+ ...
T Consensus 208 ~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~ 285 (403)
T COG1221 208 SQPRPVDVRLICATTE--DLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRA 285 (403)
T ss_pred CCCcCCCceeeecccc--CHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 112347999999984 23333322 112221 56788888888855 2233344443332222 233
Q ss_pred HHH-hCCCCcHHHHHHHHHHHHHHHHH
Q 005304 428 IAM-RTPGFSGADLANLLNEAAILAGR 453 (703)
Q Consensus 428 lA~-~t~G~sgadL~~lv~eAa~~A~r 453 (703)
+-. ..+| +.++|+|+++.++..+..
T Consensus 286 L~~y~~pG-NirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 286 LLAYDWPG-NIRELKNLVERAVAQASG 311 (403)
T ss_pred HHhCCCCC-cHHHHHHHHHHHHHHhcc
Confidence 333 3454 789999999999888743
No 157
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.25 E-value=1.2e-10 Score=140.89 Aligned_cols=202 Identities=22% Similarity=0.310 Sum_probs=128.7
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHH----
Q 005304 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM---- 303 (703)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~---- 303 (703)
..|+|++++.+.+.+.+...+..-. ...++...+||+||||||||++|+++|..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~---~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS---DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC---CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 5699999999999988876432100 001233468999999999999999999976 579999999987542
Q ss_pred -Hhhhhhh-----HHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCc--c-------CCC
Q 005304 304 -FVGVGAS-----RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--E-------GNT 368 (703)
Q Consensus 304 -~~G~~~~-----~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~--~-------~~~ 368 (703)
+.|.... ....+.+..+.+..+|||||||+.+ +.. +.+.|+..++.- . .-.
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----------~~~---v~~~Ll~~l~~g~l~d~~g~~vd~r 707 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----------HPD---VFNVLLQVLDDGRLTDGQGRTVDFR 707 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------CHH---HHHHHHHHHhcCceecCCCeEEecC
Confidence 2222111 1123344445555679999999987 333 444455544321 0 113
Q ss_pred CeEEEEecCCccc-------------------------ccccccCCCccceeeeecCCChhhHHHHHHHHhcC-------
Q 005304 369 GIIVIAATNRADI-------------------------LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN------- 416 (703)
Q Consensus 369 ~ViVIaaTN~p~~-------------------------LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~------- 416 (703)
+.+||+|||.... +.|.|+. |+|.++.+.+++.+...+|+...+..
T Consensus 708 n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~ 785 (852)
T TIGR03346 708 NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAE 785 (852)
T ss_pred CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999997211 2345665 99999999999999999998765532
Q ss_pred CCCCcccc---HHHHHHhC--CCCcHHHHHHHHHHHHHHH
Q 005304 417 KKFDADVS---LDVIAMRT--PGFSGADLANLLNEAAILA 451 (703)
Q Consensus 417 ~~l~~dvd---l~~lA~~t--~G~sgadL~~lv~eAa~~A 451 (703)
..+...++ .+.|+... +.+..+.|+++++......
T Consensus 786 ~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~ 825 (852)
T TIGR03346 786 RKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENP 825 (852)
T ss_pred CCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHH
Confidence 11111122 44555542 2455677777776665433
No 158
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.25 E-value=1.1e-10 Score=132.65 Aligned_cols=213 Identities=23% Similarity=0.308 Sum_probs=133.3
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc------------------
Q 005304 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA------------------ 288 (703)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~------------------ 288 (703)
...|+||.|++.+++.+.-.+. ....++|.||||||||++++++++.+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa~--------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAAA--------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhcc--------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 3489999999999776554331 12379999999999999999998622
Q ss_pred ----------CCCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHH
Q 005304 289 ----------GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (703)
Q Consensus 289 ----------~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL 358 (703)
..||...+++......+|.+...-...+..|. ..+|||||++.+ ....+..+.+.|
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~-----------~~~~~~~L~~~L 319 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEF-----------KRSVLDALREPI 319 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhC-----------CHHHHHHHHHHH
Confidence 24555555444333334433222223344442 359999999998 223344444444
Q ss_pred hhhc----C----ccCCCCeEEEEecCCc------c-----------------cccccccCCCccceeeeecCCChhh--
Q 005304 359 TEMD----G----FEGNTGIIVIAATNRA------D-----------------ILDSALLRPGRFDRQVTVDVPDIRG-- 405 (703)
Q Consensus 359 ~~ld----~----~~~~~~ViVIaaTN~p------~-----------------~LD~aLlRpgRfdr~I~i~~Pd~~e-- 405 (703)
+.-. . .....++.+|+++|.. + .+...|++ |||.++.++.++..+
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~ 397 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLL 397 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHh
Confidence 3210 0 0112478999999962 1 47778888 999999998765432
Q ss_pred -----------HHHHHHH------HhcCC---CCCcccc-------------HH---HHHHhCCCCcHHHHHHHHHHHHH
Q 005304 406 -----------RTEILKV------HGSNK---KFDADVS-------------LD---VIAMRTPGFSGADLANLLNEAAI 449 (703)
Q Consensus 406 -----------R~~IL~~------~l~~~---~l~~dvd-------------l~---~lA~~t~G~sgadL~~lv~eAa~ 449 (703)
|.++.+. ++.+. .+...+. .. .-+....++|.+....+++-|..
T Consensus 398 ~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArT 477 (499)
T TIGR00368 398 STGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVART 477 (499)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 2223221 11111 1111111 11 11223346899999999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHH
Q 005304 450 LAGRRGKAAISSKEIDDSID 469 (703)
Q Consensus 450 ~A~r~~~~~It~~di~~Al~ 469 (703)
+|.-++...|+.+|+.+|+.
T Consensus 478 iAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 478 IADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHhhcCCCCCCHHHHHHHHh
Confidence 99999999999999999974
No 159
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.24 E-value=1.8e-10 Score=139.05 Aligned_cols=168 Identities=22% Similarity=0.282 Sum_probs=110.8
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHH--
Q 005304 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF-- 304 (703)
Q Consensus 230 f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~-- 304 (703)
++.|+|++++.+.+.+.+...+..-... .++...+||+||||||||++|+++|..+ +.+|+.++|+++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~---~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~ 643 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDP---NRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSV 643 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCC---CCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhH
Confidence 4579999999999999887644211000 0122358999999999999999999876 5689999999886532
Q ss_pred ---hhhhh-----hHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCc--c-------CC
Q 005304 305 ---VGVGA-----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--E-------GN 367 (703)
Q Consensus 305 ---~G~~~-----~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~--~-------~~ 367 (703)
.|... ..-..+.+..+....+||+|||++.+ +.. ..+.|+..++.- . .-
T Consensus 644 ~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----------~~~---v~~~Ll~ile~g~l~d~~gr~vd~ 709 (857)
T PRK10865 644 SRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----------HPD---VFNILLQVLDDGRLTDGQGRTVDF 709 (857)
T ss_pred HHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----------CHH---HHHHHHHHHhhCceecCCceEEee
Confidence 22111 11111222333444489999999987 233 344455444321 1 11
Q ss_pred CCeEEEEecCCcc-------------------------cccccccCCCccceeeeecCCChhhHHHHHHHHhcC
Q 005304 368 TGIIVIAATNRAD-------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN 416 (703)
Q Consensus 368 ~~ViVIaaTN~p~-------------------------~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~ 416 (703)
.+.+||+|||... .+.|+|+. |+|..+.+.+++.+....|++..+..
T Consensus 710 rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 710 RNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred cccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 2467899999621 23467777 99999999999999998888776643
No 160
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=2.2e-10 Score=125.08 Aligned_cols=190 Identities=18% Similarity=0.223 Sum_probs=126.1
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------CEEEe---
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSI--- 295 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~-------pfi~i--- 295 (703)
.+..|++|+|++++++.+...+.. .+.|..+||+||+|+|||++|+.+|+.+.+ |....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 456899999999999999888753 245668999999999999999999998754 22111
Q ss_pred -echhHHHH--------H-h-------------hhhhhHHHHHHHHHH----hcCCeEEEEcCcccccccCCCCCCCCCh
Q 005304 296 -SGSEFVEM--------F-V-------------GVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGND 348 (703)
Q Consensus 296 -s~se~~~~--------~-~-------------G~~~~~ir~lF~~A~----~~aP~ILfIDEID~L~~~r~~~~~~~~~ 348 (703)
.|...... + + ..+.+.+|++-+... .....|++|||+|.+-
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~------------ 154 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN------------ 154 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC------------
Confidence 11111100 0 0 011234555443332 2345699999999992
Q ss_pred HHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHH
Q 005304 349 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVI 428 (703)
Q Consensus 349 e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~l 428 (703)
....|.||..++... .+.++|..|+.++.+.|.+++ |+ ..+.+++|+.++..++++.......++ +..+..+
T Consensus 155 --~~aanaLLk~LEEpp--~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i 226 (351)
T PRK09112 155 --RNAANAILKTLEEPP--ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEAL 226 (351)
T ss_pred --HHHHHHHHHHHhcCC--CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHH
Confidence 345677888888643 345666667888888899988 87 589999999999999998754322222 2225566
Q ss_pred HHhCCCCcHHHHHHHHHHH
Q 005304 429 AMRTPGFSGADLANLLNEA 447 (703)
Q Consensus 429 A~~t~G~sgadL~~lv~eA 447 (703)
+..+.| +++...++++..
T Consensus 227 ~~~s~G-~pr~Al~ll~~~ 244 (351)
T PRK09112 227 LQRSKG-SVRKALLLLNYG 244 (351)
T ss_pred HHHcCC-CHHHHHHHHhcC
Confidence 666665 566555555443
No 161
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.23 E-value=3.5e-11 Score=138.68 Aligned_cols=213 Identities=23% Similarity=0.336 Sum_probs=129.2
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHH
Q 005304 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 301 (703)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~ 301 (703)
.+..+|++++|.+...+++.+.+..+... ..+|||+|++||||+++|++|.... +.||+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~~----------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVARS----------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhCc----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 34568999999999999999888776543 2379999999999999999997764 6799999998764
Q ss_pred HHH-----hhhhh-------hHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc----
Q 005304 302 EMF-----VGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---- 365 (703)
Q Consensus 302 ~~~-----~G~~~-------~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~---- 365 (703)
+.. .|... ......|+.+ ...+|||||||.+ +...+..+..++..-. +.
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L-----------~~~~Q~~Ll~~l~~~~-~~~~~~ 324 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI-----------SPAFQAKLLRVLQEGE-FERVGG 324 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC-----------CHHHHHHHHHHHhcCc-EEECCC
Confidence 322 11110 0001123333 2468999999999 2333444444443211 11
Q ss_pred ---CCCCeEEEEecCCc--ccccccccCCCccce--eeeecCCChhhHHH----HHHHHhcC----C----CCCccccHH
Q 005304 366 ---GNTGIIVIAATNRA--DILDSALLRPGRFDR--QVTVDVPDIRGRTE----ILKVHGSN----K----KFDADVSLD 426 (703)
Q Consensus 366 ---~~~~ViVIaaTN~p--~~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~----IL~~~l~~----~----~l~~dvdl~ 426 (703)
...++.+|++|+.. +.+....+|+..|.+ .+.+.+|..++|.+ ++++++.. . .++++ .+.
T Consensus 325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~-a~~ 403 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPS-AIR 403 (534)
T ss_pred CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHH-HHH
Confidence 11258899988753 112211222211222 56777888877744 33333321 1 12222 245
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHH
Q 005304 427 VIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDD 466 (703)
Q Consensus 427 ~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~ 466 (703)
.|.....--+.++|+++++.|+..+ ....|+.+|+..
T Consensus 404 ~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~~ 440 (534)
T TIGR01817 404 VLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFSC 440 (534)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCch
Confidence 5555543457889999999887655 345788887653
No 162
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.22 E-value=5.9e-11 Score=135.97 Aligned_cols=199 Identities=23% Similarity=0.285 Sum_probs=123.4
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEeechhHHHH--
Q 005304 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM-- 303 (703)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~se~~~~-- 303 (703)
++++++|.+...+.+.+.+..+... +.+|||+|++||||+++|+++... .+.||+.++|..+.+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~----------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAAS----------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCC----------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 6889999999999999988776543 338999999999999999999765 4689999999877532
Q ss_pred ---Hhhhhh-------hHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc--Cc----cCC
Q 005304 304 ---FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GF----EGN 367 (703)
Q Consensus 304 ---~~G~~~-------~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~----~~~ 367 (703)
+.|... ......|+.|. ...|||||||.+ +.+.+..+..++..-. .. ...
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 320 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGEL-----------PLALQAKLLRVLQYGEIQRVGSDRSLR 320 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhC-----------CHHHHHHHHHHHhcCCEeeCCCCccee
Confidence 122110 01112355443 358999999999 2333444444443211 01 112
Q ss_pred CCeEEEEecCCcc--cccccccCCCccce--eeeecCCChhhHHHHH----HHHh----cCC-----CCCccccHHHHHH
Q 005304 368 TGIIVIAATNRAD--ILDSALLRPGRFDR--QVTVDVPDIRGRTEIL----KVHG----SNK-----KFDADVSLDVIAM 430 (703)
Q Consensus 368 ~~ViVIaaTN~p~--~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~IL----~~~l----~~~-----~l~~dvdl~~lA~ 430 (703)
.++.+|++||..- .+....+++..|++ .+.|.+|..++|.+-+ ++++ .+. .++++ .+..|..
T Consensus 321 ~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~-a~~~L~~ 399 (509)
T PRK05022 321 VDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPA-AQAALLA 399 (509)
T ss_pred cceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHH-HHHHHHh
Confidence 3689999998632 12222222222222 5678899999986622 2222 111 12222 2445555
Q ss_pred hCCCCcHHHHHHHHHHHHHHHH
Q 005304 431 RTPGFSGADLANLLNEAAILAG 452 (703)
Q Consensus 431 ~t~G~sgadL~~lv~eAa~~A~ 452 (703)
...-.+.++|++++++|+..+.
T Consensus 400 y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 400 YDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred CCCCCcHHHHHHHHHHHHHhcC
Confidence 4444578999999999988774
No 163
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.22 E-value=7e-10 Score=116.04 Aligned_cols=190 Identities=16% Similarity=0.202 Sum_probs=118.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC-CEE--E-ee----chhHHHHH---hhhh---h------hHHHHHH-HHHHhcCC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGV-PFF--S-IS----GSEFVEMF---VGVG---A------SRVRDLF-KKAKENAP 324 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~-pfi--~-is----~se~~~~~---~G~~---~------~~ir~lF-~~A~~~aP 324 (703)
.++|+||+|+|||++++.+++++.. .+. . ++ ..++.... .|.. . ..+.+.+ .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4889999999999999999998752 222 1 11 12222111 1211 0 1122222 22335667
Q ss_pred eEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC--Cccccc----ccccCCCccceeeee
Q 005304 325 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN--RADILD----SALLRPGRFDRQVTV 398 (703)
Q Consensus 325 ~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN--~p~~LD----~aLlRpgRfdr~I~i 398 (703)
++|+|||+|.+. ......+..+..... .....+.|+.+.. ..+.+. ..+.+ |+...+++
T Consensus 125 ~vliiDe~~~l~-----------~~~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l 189 (269)
T TIGR03015 125 ALLVVDEAQNLT-----------PELLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHL 189 (269)
T ss_pred eEEEEECcccCC-----------HHHHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeC
Confidence 899999999982 122223333322211 1122233333322 122221 12444 77778899
Q ss_pred cCCChhhHHHHHHHHhcCCCC-----CccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 005304 399 DVPDIRGRTEILKVHGSNKKF-----DADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (703)
Q Consensus 399 ~~Pd~~eR~~IL~~~l~~~~l-----~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v 471 (703)
++.+.++..+++...+...+. -.+..++.|.+.+.|. ++.|..+|+.+...|..++...|+.++++.++..+
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 999999999999888754321 1233477888999886 66799999999999999999999999999999874
No 164
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.21 E-value=4.8e-10 Score=125.49 Aligned_cols=213 Identities=18% Similarity=0.169 Sum_probs=126.7
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEeechh-HHHHHhhhh
Q 005304 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSE-FVEMFVGVG 308 (703)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~--pfi~is~se-~~~~~~G~~ 308 (703)
.|+|.+++.+.+...+. ...+|||+||||||||++|++++...+. +|....+.- ......|..
T Consensus 21 ~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 46777777665544431 1237999999999999999999987643 666555431 122223321
Q ss_pred -hhHH--HHHHHHHHhc---CCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc--C-----C-CCeEEEE
Q 005304 309 -ASRV--RDLFKKAKEN---APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--G-----N-TGIIVIA 374 (703)
Q Consensus 309 -~~~i--r~lF~~A~~~---aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~--~-----~-~~ViVIa 374 (703)
.... ...|...... ...+||+|||..+. ..+.+.||..|+.-. . . +.-++++
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras--------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ 152 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG--------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVT 152 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccCC--------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEE
Confidence 0110 1223222111 22489999998762 345666776663211 0 0 1134455
Q ss_pred ecCCcc---cccccccCCCccceeeeecCCC-hhhHHHHHHHHhcC--CCC--Ccccc----------------------
Q 005304 375 ATNRAD---ILDSALLRPGRFDRQVTVDVPD-IRGRTEILKVHGSN--KKF--DADVS---------------------- 424 (703)
Q Consensus 375 aTN~p~---~LD~aLlRpgRfdr~I~i~~Pd-~~eR~~IL~~~l~~--~~l--~~dvd---------------------- 424 (703)
|||... ...++++. ||-..+.+++|+ .++..+++...... ... ..-++
T Consensus 153 ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~e 230 (498)
T PRK13531 153 ASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFE 230 (498)
T ss_pred ECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHH
Confidence 557421 23348888 897788999997 45557787654221 111 00000
Q ss_pred -HHHHHHh---C---CCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCc
Q 005304 425 -LDVIAMR---T---PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGM 475 (703)
Q Consensus 425 -l~~lA~~---t---~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~~g~ 475 (703)
+..|... + ...|++--..+++-|...|.-.|+..|+.+|+. .+..+++..
T Consensus 231 yI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HR 287 (498)
T PRK13531 231 LIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHD 287 (498)
T ss_pred HHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccC
Confidence 1223321 2 237888888999999999999999999999999 666666553
No 165
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.20 E-value=4.3e-10 Score=135.64 Aligned_cols=166 Identities=22% Similarity=0.282 Sum_probs=113.2
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHH----
Q 005304 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM---- 303 (703)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~---- 303 (703)
+.|+|++++++.+.+.+...+..-. ...++...+||+||+|||||++|+++|..+ +.+++.+++++|.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~---~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK---NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc---CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 5689999999999888865322100 001122357999999999999999999987 478999999888542
Q ss_pred -Hhhhhh-----hHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc---------CCC
Q 005304 304 -FVGVGA-----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------GNT 368 (703)
Q Consensus 304 -~~G~~~-----~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~---------~~~ 368 (703)
+.|... .....+.+..+.+..+||+|||+|.+ + ..+.+.|+..+|.-. .-.
T Consensus 586 ~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----------~---~~v~~~Llq~le~g~~~d~~g~~v~~~ 651 (821)
T CHL00095 586 KLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----------H---PDIFNLLLQILDDGRLTDSKGRTIDFK 651 (821)
T ss_pred HhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----------C---HHHHHHHHHHhccCceecCCCcEEecC
Confidence 222211 11234555566666689999999987 2 234555565555311 124
Q ss_pred CeEEEEecCCccc-------------------------------------ccccccCCCccceeeeecCCChhhHHHHHH
Q 005304 369 GIIVIAATNRADI-------------------------------------LDSALLRPGRFDRQVTVDVPDIRGRTEILK 411 (703)
Q Consensus 369 ~ViVIaaTN~p~~-------------------------------------LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~ 411 (703)
+.+||+|||.... +.|.++. |+|.+|.|.+.+.++..+|++
T Consensus 652 ~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~ 729 (821)
T CHL00095 652 NTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAE 729 (821)
T ss_pred ceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHH
Confidence 6899999985311 1244566 899999999999999999987
Q ss_pred HHhc
Q 005304 412 VHGS 415 (703)
Q Consensus 412 ~~l~ 415 (703)
..+.
T Consensus 730 ~~l~ 733 (821)
T CHL00095 730 IMLK 733 (821)
T ss_pred HHHH
Confidence 7664
No 166
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.19 E-value=4.3e-10 Score=128.15 Aligned_cols=212 Identities=22% Similarity=0.303 Sum_probs=137.1
Q ss_pred ccccccccCCCccccccccchHHHHHHHHHHHHhcCchhhh----hc-------------------cCCCCceEEEEcCC
Q 005304 217 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFT----AI-------------------GARIPKGVLLVGPP 273 (703)
Q Consensus 217 ~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~----~l-------------------g~~~p~gvLL~GPp 273 (703)
..++|++++.+..|.|+.|-+..-.++...+..+. +-.|. ++ +-+..|-+||+|||
T Consensus 257 h~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD-~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~Gpp 335 (877)
T KOG1969|consen 257 HDKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWD-PCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPP 335 (877)
T ss_pred CcceeecccChhHHHHHhcchhHHHHHHHHHHhhc-HHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCC
Confidence 45699999999999999999988776555443210 01111 11 12223578999999
Q ss_pred CChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhhHHHHHHHHHH--------hcCCeEEEEcCcccccccCCCCCCC
Q 005304 274 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAK--------ENAPCIVFVDEIDAVGRQRGTGIGG 345 (703)
Q Consensus 274 GTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~--------~~aP~ILfIDEID~L~~~r~~~~~~ 345 (703)
|.||||||+.+|+.+|+.++.+|+|+-.. +..+++.+..|- ...|..|+|||||--
T Consensus 336 GlGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa---------- 399 (877)
T KOG1969|consen 336 GLGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA---------- 399 (877)
T ss_pred CCChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCC----------
Confidence 99999999999999999999999987432 333444444442 245878889999864
Q ss_pred CChHHHHHHHHHHhhhc-------CccCC---------C---CeEEEEecCCcccccccccCCCccceeeeecCCChhhH
Q 005304 346 GNDEREQTLNQLLTEMD-------GFEGN---------T---GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 406 (703)
Q Consensus 346 ~~~e~~~~l~~LL~~ld-------~~~~~---------~---~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR 406 (703)
. ...++.++..+. |-+.. . .--|||.||.... |+|+.=--|-.+|.|.+|...-.
T Consensus 400 -~---~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~p~~s~L 473 (877)
T KOG1969|consen 400 -P---RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAFVPPSQSRL 473 (877)
T ss_pred -c---HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEecCCChhHH
Confidence 1 122333333322 11110 0 1357777886544 55532114777899999988877
Q ss_pred HHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005304 407 TEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (703)
Q Consensus 407 ~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~ 454 (703)
.+-|+..+.+..+..+ ...|...++ ++-.||++.+|.-...|.+.
T Consensus 474 v~RL~~IC~rE~mr~d--~~aL~~L~e-l~~~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 474 VERLNEICHRENMRAD--SKALNALCE-LTQNDIRSCINTLQFLASNV 518 (877)
T ss_pred HHHHHHHHhhhcCCCC--HHHHHHHHH-HhcchHHHHHHHHHHHHHhc
Confidence 7777777666555433 444444444 44569999999988888654
No 167
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.19 E-value=2.3e-10 Score=131.00 Aligned_cols=221 Identities=18% Similarity=0.211 Sum_probs=130.7
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-EEEe---echhHHHHHhhh
Q 005304 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-FFSI---SGSEFVEMFVGV 307 (703)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p-fi~i---s~se~~~~~~G~ 307 (703)
+|.|.+.+|..+.-.+-.-..+..-.....+-.-+|||+|+||||||++|++++...... |+.. ++..+.......
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 578888887765433321111110000112223379999999999999999999877533 3221 222221100000
Q ss_pred ---hhhHH-HHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc-----------CCCCeEE
Q 005304 308 ---GASRV-RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GNTGIIV 372 (703)
Q Consensus 308 ---~~~~i-r~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~-----------~~~~ViV 372 (703)
+...+ ...+..| ...+++|||+|.+- ...+ ..|+..|+.-. -+..+.|
T Consensus 284 ~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~-----------~~~q---~~L~e~me~~~i~i~k~G~~~~l~~~~~v 346 (509)
T smart00350 284 PETREFTLEGGALVLA---DNGVCCIDEFDKMD-----------DSDR---TAIHEAMEQQTISIAKAGITTTLNARCSV 346 (509)
T ss_pred cCcceEEecCccEEec---CCCEEEEechhhCC-----------HHHH---HHHHHHHhcCEEEEEeCCEEEEecCCcEE
Confidence 00000 0011111 23599999999982 2233 33444443211 1346899
Q ss_pred EEecCCcc-------------cccccccCCCccceee-eecCCChhhHHHHHHHHhcCCC-------------C------
Q 005304 373 IAATNRAD-------------ILDSALLRPGRFDRQV-TVDVPDIRGRTEILKVHGSNKK-------------F------ 419 (703)
Q Consensus 373 IaaTN~p~-------------~LD~aLlRpgRfdr~I-~i~~Pd~~eR~~IL~~~l~~~~-------------l------ 419 (703)
|||+|..+ .|++++++ |||..+ ..+.|+.+...+|.++.+.... +
T Consensus 347 iAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 424 (509)
T smart00350 347 LAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLR 424 (509)
T ss_pred EEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHH
Confidence 99999743 58999999 999854 5578999988888876432100 0
Q ss_pred ----------Ccccc---HHHHH-----Hh----------CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 005304 420 ----------DADVS---LDVIA-----MR----------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (703)
Q Consensus 420 ----------~~dvd---l~~lA-----~~----------t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v 471 (703)
.+.++ .+.+. .+ ..+.|++.++.+++-|...|.-+++..|+.+|+.+|+.=+
T Consensus 425 ~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~ 504 (509)
T smart00350 425 KYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLL 504 (509)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 00111 11110 01 1356899999999999999999999999999999998744
No 168
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.19 E-value=8e-11 Score=138.48 Aligned_cols=214 Identities=20% Similarity=0.297 Sum_probs=130.5
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHH-
Q 005304 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE- 302 (703)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~- 302 (703)
..+|++++|.+.+.+++.+.+..+... +.+|||+|++||||+++|+++.... +.||+.++|..+.+
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKS----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCc----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 457999999999988888877665433 2379999999999999999997654 57999999987642
Q ss_pred ----HHhhhh----hhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc--CccC----CC
Q 005304 303 ----MFVGVG----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG----NT 368 (703)
Q Consensus 303 ----~~~G~~----~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~~~----~~ 368 (703)
.+.|.. .......|+.| ...+||||||+.+ +...+..+..+|+.-. .... ..
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~ 456 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL-----------SPELQSALLQVLKTGVITRLDSRRLIPV 456 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceEEe
Confidence 223311 00011134333 3468999999998 3334444444443211 0011 12
Q ss_pred CeEEEEecCCcc--cccccccCCCccce--eeeecCCChhhHHH----HHHHHhc----C----CCCCccccHHHHHHhC
Q 005304 369 GIIVIAATNRAD--ILDSALLRPGRFDR--QVTVDVPDIRGRTE----ILKVHGS----N----KKFDADVSLDVIAMRT 432 (703)
Q Consensus 369 ~ViVIaaTN~p~--~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~----IL~~~l~----~----~~l~~dvdl~~lA~~t 432 (703)
++.+|+|||..- .+....+|+..|.+ .+.+.+|..++|.+ +++.++. . ..++++ .+..|....
T Consensus 457 ~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~-a~~~L~~y~ 535 (638)
T PRK11388 457 DVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDD-ALARLVSYR 535 (638)
T ss_pred eEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHH-HHHHHHcCC
Confidence 578999998632 22222233222222 67888999999864 2222222 1 112222 245555555
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
--.+.++|+++++.|...+ ....|+.+|+...+
T Consensus 536 WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 536 WPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred CCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 3457889999999887654 33468888776554
No 169
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.19 E-value=4.2e-10 Score=131.08 Aligned_cols=102 Identities=18% Similarity=0.255 Sum_probs=66.5
Q ss_pred CeEEEEecCCc--ccccccccCCCccc---eeeeec--CCC-hhhHHHHHHH---HhcCCCCCcccc---HHHHH---Hh
Q 005304 369 GIIVIAATNRA--DILDSALLRPGRFD---RQVTVD--VPD-IRGRTEILKV---HGSNKKFDADVS---LDVIA---MR 431 (703)
Q Consensus 369 ~ViVIaaTN~p--~~LD~aLlRpgRfd---r~I~i~--~Pd-~~eR~~IL~~---~l~~~~l~~dvd---l~~lA---~~ 431 (703)
++.+|+++|.. ..+|+.|++ ||+ ..+.++ .|+ .+.|.++.+. .+++.+..+..+ +..+. .+
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 68899999974 578999999 998 555553 354 4445444433 222221111222 22222 11
Q ss_pred CC------CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 005304 432 TP------GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (703)
Q Consensus 432 t~------G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~ 472 (703)
.. ..+.++|.+++++|...|..++...|+.+|+.+|++...
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 11 245799999999999889888889999999999987543
No 170
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.18 E-value=2e-10 Score=124.63 Aligned_cols=191 Identities=20% Similarity=0.254 Sum_probs=115.2
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEeechhHHHHH-----
Q 005304 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMF----- 304 (703)
Q Consensus 233 v~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~se~~~~~----- 304 (703)
++|.+.+.+++.+.+..+... ..+|||+|++||||+++|+++-.. .+.||+.++|..+.+..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~----------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL----------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC----------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 478888888888877765433 237999999999999999999554 45799999998654321
Q ss_pred hhhhh-------hHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc--C----ccCCCCeE
Q 005304 305 VGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--G----FEGNTGII 371 (703)
Q Consensus 305 ~G~~~-------~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld--~----~~~~~~Vi 371 (703)
.|... .....+|+.|. ..+|||||||.+ +...+..+..++..-. . -....++.
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATA-----------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhCC---CCEEEeCChHhC-----------CHHHHHHHHHHHHcCcEEecCCCceeccceE
Confidence 12110 01122355443 468999999999 3334444444443211 0 01124689
Q ss_pred EEEecCCc--c-----cccccccCCCccceeeeecCCChhhHHHHH----HHHh----cCC------CCCccccHHHHHH
Q 005304 372 VIAATNRA--D-----ILDSALLRPGRFDRQVTVDVPDIRGRTEIL----KVHG----SNK------KFDADVSLDVIAM 430 (703)
Q Consensus 372 VIaaTN~p--~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL----~~~l----~~~------~l~~dvdl~~lA~ 430 (703)
+|++||.. + .+.+.|.. ||. .+.|..|..++|.+-+ ++++ .+. .++++ .+..|..
T Consensus 137 iI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~-a~~~L~~ 212 (329)
T TIGR02974 137 LVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQ-AREQLLE 212 (329)
T ss_pred EEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHH-HHHHHHh
Confidence 99999853 1 22233333 332 4678899998886632 2222 211 12222 2445555
Q ss_pred hCCCCcHHHHHHHHHHHHHHH
Q 005304 431 RTPGFSGADLANLLNEAAILA 451 (703)
Q Consensus 431 ~t~G~sgadL~~lv~eAa~~A 451 (703)
...-.+.++|++++++|+..+
T Consensus 213 y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 213 YHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred CCCCchHHHHHHHHHHHHHhC
Confidence 543347788888888887655
No 171
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.18 E-value=1.3e-10 Score=133.40 Aligned_cols=212 Identities=19% Similarity=0.285 Sum_probs=127.1
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEeechhHHH
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVE 302 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~se~~~ 302 (703)
...+|++++|.+...+++.+.+..+... ..+|||+|++||||+++|+++-.. .+.||+.++|+.+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~----------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAML----------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCC----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 4568999999999888887777654332 236999999999999999998543 357999999987643
Q ss_pred H-----Hhhhhh-------hHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc--Cc----
Q 005304 303 M-----FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GF---- 364 (703)
Q Consensus 303 ~-----~~G~~~-------~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~---- 364 (703)
. +.|... ..-..+|+.|. ...|||||||.+ +...+..+..++..-. ..
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~ 334 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEM-----------SPRMQAKLLRFLNDGTFRRVGEDH 334 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhC-----------CHHHHHHHHHHHhcCCcccCCCCc
Confidence 2 122211 11123455543 358999999999 3344444444544311 01
Q ss_pred cCCCCeEEEEecCCc--ccccccccCCCccce--eeeecCCChhhHHHH--------HHHHhcCCCC-Ccccc---HHHH
Q 005304 365 EGNTGIIVIAATNRA--DILDSALLRPGRFDR--QVTVDVPDIRGRTEI--------LKVHGSNKKF-DADVS---LDVI 428 (703)
Q Consensus 365 ~~~~~ViVIaaTN~p--~~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~I--------L~~~l~~~~l-~~dvd---l~~l 428 (703)
....++.||++|+.+ +.+....+|+..|.+ .+.+.+|..++|.+- ++.+..+... ...++ +..|
T Consensus 335 ~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L 414 (520)
T PRK10820 335 EVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL 414 (520)
T ss_pred ceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 112357899988753 222222233322222 578889999888742 2222222211 11222 3444
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Q 005304 429 AMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEI 464 (703)
Q Consensus 429 A~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di 464 (703)
.....-.+.++|++++.+|...+ ....|+.+|+
T Consensus 415 ~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 415 TRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred hcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 44433346788888888887654 3346777665
No 172
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.18 E-value=2.3e-10 Score=124.00 Aligned_cols=195 Identities=21% Similarity=0.271 Sum_probs=118.8
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHH--
Q 005304 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM-- 303 (703)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~-- 303 (703)
-+++++|.+...+++.+.+..+... +.+|||+|++||||+++|+++-... +.||+.++|..+.+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~----------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPL----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 3678999999999998888776433 3379999999999999999996543 579999999876422
Q ss_pred ---Hhhhhh-------hHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc-------C
Q 005304 304 ---FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-------G 366 (703)
Q Consensus 304 ---~~G~~~-------~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~-------~ 366 (703)
+.|... ......|+.|. ...|||||||.+ +...+..+..++..-. +. .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~-~~~~g~~~~~ 138 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATA-----------PMLVQEKLLRVIEYGE-LERVGGSQPL 138 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhC-----------CHHHHHHHHHHHhcCc-EEeCCCCcee
Confidence 222110 01123344442 458999999999 2334444444443211 11 1
Q ss_pred CCCeEEEEecCCc-------ccccccccCCCccceeeeecCCChhhHHH----HHHHHh----cCCCCC--cccc---HH
Q 005304 367 NTGIIVIAATNRA-------DILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHG----SNKKFD--ADVS---LD 426 (703)
Q Consensus 367 ~~~ViVIaaTN~p-------~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~----IL~~~l----~~~~l~--~dvd---l~ 426 (703)
+.++.||++|+.. ..+.+.|.. ||. .+.|.+|..++|.+ ++.+++ ++.... ..++ +.
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~ 215 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARE 215 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 2358899988763 123334443 443 46788899888866 223322 221111 1222 44
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHH
Q 005304 427 VIAMRTPGFSGADLANLLNEAAILA 451 (703)
Q Consensus 427 ~lA~~t~G~sgadL~~lv~eAa~~A 451 (703)
.|....---+.++|++++++|...+
T Consensus 216 ~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 216 TLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 4444443346788888888887644
No 173
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.17 E-value=6.1e-10 Score=122.30 Aligned_cols=186 Identities=18% Similarity=0.179 Sum_probs=124.6
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE-------E----
Q 005304 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------F---- 293 (703)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pf-------i---- 293 (703)
..+.++++|+|++++++.|.+.+.. .+.|..+||+||+|+||+++|.++|+.+-+.- .
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 3567899999999999999887753 24566899999999999999999999763210 0
Q ss_pred ----EeechhH--HH-----------H-Hhh--------hhhhHHHHHHHHHH----hcCCeEEEEcCcccccccCCCCC
Q 005304 294 ----SISGSEF--VE-----------M-FVG--------VGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGI 343 (703)
Q Consensus 294 ----~is~se~--~~-----------~-~~G--------~~~~~ir~lF~~A~----~~aP~ILfIDEID~L~~~r~~~~ 343 (703)
.-.|... +. . +.+ ...+.+|++.+.+. ...|-|++|||+|.+
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------- 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------- 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence 0011111 00 0 001 12345666655542 345789999999998
Q ss_pred CCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccc
Q 005304 344 GGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV 423 (703)
Q Consensus 344 ~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dv 423 (703)
.....|.||..++.. ..+.++|.+|+.++.+.+.+++ |+ ..+.+++|+.++-.+++..+... ..+.
T Consensus 154 ------~~~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~ 219 (365)
T PRK07471 154 ------NANAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDD 219 (365)
T ss_pred ------CHHHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHH
Confidence 234677888888743 3456777888999989888887 76 57899999999999999876422 1111
Q ss_pred cHHHHHHhCCCCcHHHHHHHH
Q 005304 424 SLDVIAMRTPGFSGADLANLL 444 (703)
Q Consensus 424 dl~~lA~~t~G~sgadL~~lv 444 (703)
.+..++..+.| ++....+++
T Consensus 220 ~~~~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 220 PRAALAALAEG-SVGRALRLA 239 (365)
T ss_pred HHHHHHHHcCC-CHHHHHHHh
Confidence 12456666665 454444443
No 174
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.17 E-value=8.2e-10 Score=114.39 Aligned_cols=131 Identities=23% Similarity=0.340 Sum_probs=91.2
Q ss_pred CCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC-------------cccccccccCC
Q 005304 323 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-------------ADILDSALLRP 389 (703)
Q Consensus 323 aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~-------------p~~LD~aLlRp 389 (703)
-|.+|||||++.| + -..+..|-..++. +-.-+||.|||+ |..+++.|+.
T Consensus 296 vPGVLFIDEVhML-----------D---iEcFTyL~kalES---~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD- 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----------D---IECFTYLHKALES---PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD- 357 (456)
T ss_pred cCcceEeeehhhh-----------h---hHHHHHHHHHhcC---CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh-
Confidence 4899999999998 1 2234444444442 233467777775 4455566665
Q ss_pred CccceeeeecCCChhhHHHHHHHHhcCCCCCcc-ccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 390 GRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 390 gRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
|+ ..|..-+++.++.++|++.++....+.-+ ..+..++.....-|-+-..+++.-|...|...|+..|..+|++++-
T Consensus 358 -Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 358 -RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVT 435 (456)
T ss_pred -he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHH
Confidence 44 25666678889999999998876665533 2366677665556667777888888899999999999999999987
Q ss_pred HHHHc
Q 005304 469 DRIVA 473 (703)
Q Consensus 469 ~~v~~ 473 (703)
+-++.
T Consensus 436 ~Lf~D 440 (456)
T KOG1942|consen 436 ELFLD 440 (456)
T ss_pred HHHHh
Confidence 65443
No 175
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.4e-10 Score=135.50 Aligned_cols=162 Identities=26% Similarity=0.382 Sum_probs=115.6
Q ss_pred cccccchHHHHHHHHHHHH----hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCEEEeechhHHHH
Q 005304 231 DDVAGVDEAKQDFMEVVEF----LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVEM 303 (703)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~----l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~---~pfi~is~se~~~~ 303 (703)
..|+|++++...+.+.+.. +++|. +|-...||.||+|+|||-||+++|..+. ..++.++.|+|.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~-------rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPN-------RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCC-------CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 5699999999999988876 34443 2234678899999999999999999996 89999999999874
Q ss_pred H-----hhhhhhHH-----HHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc---C----
Q 005304 304 F-----VGVGASRV-----RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---G---- 366 (703)
Q Consensus 304 ~-----~G~~~~~i-----r~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~---~---- 366 (703)
+ .|..+..+ ..+-+..+++..|||++|||+.- ...++|-||+.||.-. +
T Consensus 564 HsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA--------------HpdV~nilLQVlDdGrLTD~~Gr~ 629 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA--------------HPDVFNLLLQVLDDGRLTDGQGRT 629 (786)
T ss_pred HHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc--------------CHHHHHHHHHHhcCCeeecCCCCE
Confidence 2 33322222 23445556677799999999886 2346777777776421 1
Q ss_pred --CCCeEEEEecCCcc----------------------------cccccccCCCccceeeeecCCChhhHHHHHHHHhc
Q 005304 367 --NTGIIVIAATNRAD----------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (703)
Q Consensus 367 --~~~ViVIaaTN~p~----------------------------~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~ 415 (703)
-.+.++|+|||--. ...|.++. |+|.+|.|.+.+.+...+|+...+.
T Consensus 630 VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 630 VDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred EecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHH
Confidence 12589999998421 12244555 8888888888888888888776553
No 176
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.17 E-value=1.8e-10 Score=105.36 Aligned_cols=126 Identities=34% Similarity=0.504 Sum_probs=82.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCC---EEEeechhHHHH--------------HhhhhhhHHHHHHHHHHhcCCeE
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISGSEFVEM--------------FVGVGASRVRDLFKKAKENAPCI 326 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~p---fi~is~se~~~~--------------~~G~~~~~ir~lF~~A~~~aP~I 326 (703)
+..++|+||||||||++++.+|..+..+ +++++++..... .........+..++.++...|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3479999999999999999999999775 888888765432 11234556778888888877899
Q ss_pred EEEcCcccccccCCCCCCCCChHHHHHHHHH--HhhhcCccCCCCeEEEEecCC-cccccccccCCCccceeeeecCC
Q 005304 327 VFVDEIDAVGRQRGTGIGGGNDEREQTLNQL--LTEMDGFEGNTGIIVIAATNR-ADILDSALLRPGRFDRQVTVDVP 401 (703)
Q Consensus 327 LfIDEID~L~~~r~~~~~~~~~e~~~~l~~L--L~~ld~~~~~~~ViVIaaTN~-p~~LD~aLlRpgRfdr~I~i~~P 401 (703)
|+|||++.+.... ........ ...........+..+|+++|. ....+..+.+ |++.++.+..+
T Consensus 82 iiiDei~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAE----------QEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHH----------HHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999984321 11111100 000111123456788888886 3334444444 88888877654
No 177
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.16 E-value=3.6e-10 Score=112.55 Aligned_cols=144 Identities=18% Similarity=0.275 Sum_probs=99.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC------------------------EEEeechhHHHHHhhhhhhHHHHHHH
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------------------------FFSISGSEFVEMFVGVGASRVRDLFK 317 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~p------------------------fi~is~se~~~~~~G~~~~~ir~lF~ 317 (703)
+.|..+||+||+|+|||++|++++..+... +..+.... ...+.+.++++.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcCCHHHHHHHHH
Confidence 456789999999999999999999987432 22221110 0122355666666
Q ss_pred HHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccc
Q 005304 318 KAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 393 (703)
Q Consensus 318 ~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd 393 (703)
.+.. ....|++|||+|.+. ....+.||..|+.. ....++|.+||.++.+.+++++ |+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~--------------~~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~- 147 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMN--------------EAAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC- 147 (188)
T ss_pred HHccCcccCCeEEEEEechhhhC--------------HHHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc-
Confidence 6643 335699999999982 23466788888763 3355666667777999999998 76
Q ss_pred eeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCC
Q 005304 394 RQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPG 434 (703)
Q Consensus 394 r~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G 434 (703)
..+.+.+|+.++..++++.+ +++ +..+..++..+.|
T Consensus 148 ~~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 148 QVLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred EEeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 48999999999999999876 233 2235666666554
No 178
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.15 E-value=1.6e-09 Score=114.50 Aligned_cols=219 Identities=21% Similarity=0.300 Sum_probs=136.2
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEeech--
Q 005304 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGS-- 298 (703)
Q Consensus 230 f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~s-- 298 (703)
=+.-+|++.+++.+..+-+.+..|..- + +.++||+|++|.|||++++.++... .+|++++.+.
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~-----R-mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~ 106 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRH-----R-MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPE 106 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCccc-----C-CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCC
Confidence 345688999999888888888888642 2 3369999999999999999998643 3688888652
Q ss_pred ----hHHHHH---hhh-------hhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCc
Q 005304 299 ----EFVEMF---VGV-------GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 364 (703)
Q Consensus 299 ----e~~~~~---~G~-------~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~ 364 (703)
.|.... .|. ..+.-.......+...+-+|+|||++.+.. +........+|.|-.....+
T Consensus 107 p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa-------Gs~~~qr~~Ln~LK~L~NeL 179 (302)
T PF05621_consen 107 PDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA-------GSYRKQREFLNALKFLGNEL 179 (302)
T ss_pred CChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc-------ccHHHHHHHHHHHHHHhhcc
Confidence 222211 111 112222334555667788999999999742 22333444444332221111
Q ss_pred cCCCCeEEEEecCCcc--cccccccCCCccceeeeecCCCh-hhHHHHHHHHhcCCCCCc--ccc----HHHHHHhCCCC
Q 005304 365 EGNTGIIVIAATNRAD--ILDSALLRPGRFDRQVTVDVPDI-RGRTEILKVHGSNKKFDA--DVS----LDVIAMRTPGF 435 (703)
Q Consensus 365 ~~~~~ViVIaaTN~p~--~LD~aLlRpgRfdr~I~i~~Pd~-~eR~~IL~~~l~~~~l~~--dvd----l~~lA~~t~G~ 435 (703)
+-.++.+++-.-.. .-|+.+-+ ||+ .+.++.... ++-..++..+-...++.. +.. ...|-..+.|.
T Consensus 180 --~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~ 254 (302)
T PF05621_consen 180 --QIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGL 254 (302)
T ss_pred --CCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCc
Confidence 22344444332222 34677777 997 344444432 334556655544444331 122 34566678876
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 005304 436 SGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (703)
Q Consensus 436 sgadL~~lv~eAa~~A~r~~~~~It~~di~~A 467 (703)
.+++.++++.|+..|.+.|.+.||.+.++..
T Consensus 255 -iG~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 255 -IGELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred -hHHHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 5579999999999999999999999988763
No 179
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.13 E-value=6.3e-10 Score=131.98 Aligned_cols=200 Identities=24% Similarity=0.350 Sum_probs=123.6
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEeechhHHHH
Q 005304 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM 303 (703)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~se~~~~ 303 (703)
+.+|++++|.+...+.+.+.+..+.... .+|||+|++|||||++|+++... .+.||+.++|..+.+.
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~~~----------~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQSD----------STVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhCCC----------CCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 4579999999999999988887654332 37999999999999999999764 4679999999865432
Q ss_pred -----Hhhhh-------hhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc--Cc----c
Q 005304 304 -----FVGVG-------ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GF----E 365 (703)
Q Consensus 304 -----~~G~~-------~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~----~ 365 (703)
+.|.. .......|+.+. ..+||||||+.+ +...+..+..++..-. .. .
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDM-----------PLELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhC-----------CHHHHHHHHHHHHhCCEEeCCCCCc
Confidence 22210 011123454442 468999999998 2333444444443211 00 1
Q ss_pred CCCCeEEEEecCCc--ccccccccCCCccce--eeeecCCChhhHHHH----HHHHh----cCCC-----CCccccHHHH
Q 005304 366 GNTGIIVIAATNRA--DILDSALLRPGRFDR--QVTVDVPDIRGRTEI----LKVHG----SNKK-----FDADVSLDVI 428 (703)
Q Consensus 366 ~~~~ViVIaaTN~p--~~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~I----L~~~l----~~~~-----l~~dvdl~~l 428 (703)
...++.+|++|+.. +.+....+++..|.+ .+.|.+|..++|.+- ++.++ .+.. ++++ .+..|
T Consensus 508 ~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~-al~~L 586 (686)
T PRK15429 508 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAE-TLRTL 586 (686)
T ss_pred ccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHH-HHHHH
Confidence 12468899999863 222333333222322 578899999998762 23222 2111 2222 24455
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHH
Q 005304 429 AMRTPGFSGADLANLLNEAAILA 451 (703)
Q Consensus 429 A~~t~G~sgadL~~lv~eAa~~A 451 (703)
.....-.+.++|++++++|+..+
T Consensus 587 ~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 587 SNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhC
Confidence 44443347889999998887754
No 180
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.13 E-value=9.1e-10 Score=128.01 Aligned_cols=189 Identities=22% Similarity=0.315 Sum_probs=123.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC--CCEEEeechhHHHHHhhhhhhHHHHHHHHH---------HhcCCeEEEEcCccc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEMFVGVGASRVRDLFKKA---------KENAPCIVFVDEIDA 334 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~se~~~~~~G~~~~~ir~lF~~A---------~~~aP~ILfIDEID~ 334 (703)
+|||.|+||||||++|++++.... .||+.+.++...+...|.. .+...+... .+....+||||||+.
T Consensus 18 ~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 18 GVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 799999999999999999999764 4799888643333333331 111101000 001225999999999
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHhhhcCcc-----------CCCCeEEEEecCCcc---cccccccCCCccceeeeec-
Q 005304 335 VGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GNTGIIVIAATNRAD---ILDSALLRPGRFDRQVTVD- 399 (703)
Q Consensus 335 L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~-----------~~~~ViVIaaTN~p~---~LD~aLlRpgRfdr~I~i~- 399 (703)
+. ..+.+.|+..|+.-. ....+.||+++|..+ .+.++|+. ||+.++.+.
T Consensus 96 l~--------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~ 159 (589)
T TIGR02031 96 LD--------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLED 159 (589)
T ss_pred CC--------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCC
Confidence 82 234455555554211 124689999999765 78889999 999877665
Q ss_pred CCChhhHHHHHHHHhcCC-------------------------CCCccccHHHHHHh--CCCCc-HHHHHHHHHHHHHHH
Q 005304 400 VPDIRGRTEILKVHGSNK-------------------------KFDADVSLDVIAMR--TPGFS-GADLANLLNEAAILA 451 (703)
Q Consensus 400 ~Pd~~eR~~IL~~~l~~~-------------------------~l~~dvdl~~lA~~--t~G~s-gadL~~lv~eAa~~A 451 (703)
+|+.++|.+|++...... .++++ .+..++.. ..|.+ .+--..+++-|...|
T Consensus 160 ~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~-~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~A 238 (589)
T TIGR02031 160 VASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAE-QVKELVLTAASLGISGHRADLFAVRAAKAHA 238 (589)
T ss_pred CCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHH-HHHHHHHHHHHcCCCCccHHHHHHHHHHHHH
Confidence 567788899887754211 11111 12222221 12333 444557788899999
Q ss_pred HHhCCCCcCHHHHHHHHHHHHc
Q 005304 452 GRRGKAAISSKEIDDSIDRIVA 473 (703)
Q Consensus 452 ~r~~~~~It~~di~~Al~~v~~ 473 (703)
.-+++..|+.+|+..|+.-++.
T Consensus 239 al~gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 239 ALHGRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred HHhCCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999987763
No 181
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.12 E-value=6.7e-11 Score=111.67 Aligned_cols=113 Identities=35% Similarity=0.416 Sum_probs=71.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH--HHhhhhhhH------HHHHHHHHHhcCCeEEEEcCcccccc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE--MFVGVGASR------VRDLFKKAKENAPCIVFVDEIDAVGR 337 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~--~~~G~~~~~------ir~lF~~A~~~aP~ILfIDEID~L~~ 337 (703)
+|||+||||||||++|+.+|+.++.+++.++++...+ .+.|.-.-. ....+-.+. ..++|++||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccC--
Confidence 5899999999999999999999999999999876543 222211100 000011111 14689999999987
Q ss_pred cCCCCCCCCChHHHHHHHHHHhhhcCc-------c-CCC------CeEEEEecCCcc----cccccccCCCcc
Q 005304 338 QRGTGIGGGNDEREQTLNQLLTEMDGF-------E-GNT------GIIVIAATNRAD----ILDSALLRPGRF 392 (703)
Q Consensus 338 ~r~~~~~~~~~e~~~~l~~LL~~ld~~-------~-~~~------~ViVIaaTN~p~----~LD~aLlRpgRf 392 (703)
+.+....++.++..-.-. . ... ++.+|+|+|..+ .+++++++ ||
T Consensus 78 ---------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ---------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ---------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 234444555555431110 0 111 489999999988 89999999 87
No 182
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.11 E-value=1.2e-09 Score=117.84 Aligned_cols=66 Identities=45% Similarity=0.704 Sum_probs=52.6
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcC--CCEEEeechhHH
Q 005304 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFV 301 (703)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~se~~ 301 (703)
..+.++|+.++++..--+++.++..+ -..+++||.||||||||.||-++|+++| +||+.++++++.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K-------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGK-------IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred ccccccChHHHHHHHHHHHHHHhccc-------ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 45789999999999988888887654 2346999999999999999999999996 899999998775
No 183
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.11 E-value=6.2e-10 Score=123.70 Aligned_cols=141 Identities=24% Similarity=0.436 Sum_probs=89.6
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------CEEEee----ch
Q 005304 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSIS----GS 298 (703)
Q Consensus 230 f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~-------pfi~is----~s 298 (703)
++++.+.++..+.+...+ .. .++++|+||||||||++|+.+|..+.. .++.++ ..
T Consensus 174 l~d~~i~e~~le~l~~~L---~~-----------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRL---TI-----------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHH---hc-----------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 677777777666554443 22 337999999999999999999987742 123332 23
Q ss_pred hHHHHH--hhhhhh----HHHHHHHHHHhc--CCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhh---------
Q 005304 299 EFVEMF--VGVGAS----RVRDLFKKAKEN--APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM--------- 361 (703)
Q Consensus 299 e~~~~~--~G~~~~----~ir~lF~~A~~~--aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~l--------- 361 (703)
+|+..+ .+.+-. .+.++...|+.. .|++||||||+.....+ .+..++..|
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k-------------iFGel~~lLE~~~rg~~~ 306 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK-------------VFGEVMMLMEHDKRGENW 306 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH-------------hhhhhhhhcccccccccc
Confidence 444332 111111 234455666553 58999999999863222 111111111
Q ss_pred -----------cCccCCCCeEEEEecCCcc----cccccccCCCccceeeeecC
Q 005304 362 -----------DGFEGNTGIIVIAATNRAD----ILDSALLRPGRFDRQVTVDV 400 (703)
Q Consensus 362 -----------d~~~~~~~ViVIaaTN~p~----~LD~aLlRpgRfdr~I~i~~ 400 (703)
+.+....++.||||+|..+ .+|.||+| ||. .|++.+
T Consensus 307 ~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 307 SVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 2355567899999999987 79999999 995 566654
No 184
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.10 E-value=4.5e-09 Score=106.74 Aligned_cols=168 Identities=22% Similarity=0.345 Sum_probs=120.8
Q ss_pred cCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhH
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~ 300 (703)
...++.+.+++|++.+++.|.+....+... .+-.+|||+|..|||||+|+||+-++. +..++.|+-+++
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G--------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAEG--------LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHcC--------CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 345689999999999999988766554332 234589999999999999999997765 677999988876
Q ss_pred HHHHhhhhhhHHHHHHHHHHhc-CCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCc--cCCCCeEEEEecC
Q 005304 301 VEMFVGVGASRVRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--EGNTGIIVIAATN 377 (703)
Q Consensus 301 ~~~~~G~~~~~ir~lF~~A~~~-aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~--~~~~~ViVIaaTN 377 (703)
.. +..+++..+.. ..-|||+|++-. ++.+.....|-..|||- ....+|+|-||+|
T Consensus 125 ~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF-------------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 125 AT---------LPDLVELLRARPEKFILFCDDLSF-------------EEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred hh---------HHHHHHHHhcCCceEEEEecCCCC-------------CCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 54 44566666543 356999998722 11222333444455553 2345899999999
Q ss_pred Cccccccc--------------------ccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCc
Q 005304 378 RADILDSA--------------------LLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA 421 (703)
Q Consensus 378 ~p~~LD~a--------------------LlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~ 421 (703)
+-+.|+.. +-=+.||...+.|.+++.++-..|+..++....++.
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 86654421 111349999999999999999999999998777654
No 185
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.10 E-value=1.2e-09 Score=126.88 Aligned_cols=261 Identities=13% Similarity=0.149 Sum_probs=146.4
Q ss_pred ccccccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE-e
Q 005304 217 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS-I 295 (703)
Q Consensus 217 ~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~-i 295 (703)
....|.++..+.+++|++|.++..++++.++.....+ ....+.++|+||||||||++++++|++++..+.. .
T Consensus 70 ~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~-------~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~ 142 (637)
T TIGR00602 70 GNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLE-------NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWS 142 (637)
T ss_pred ccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccc-------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHh
Confidence 3456888999999999999999999888877654322 2223459999999999999999999998765533 1
Q ss_pred e---chhHH----------HHH--hhhhhhHHHHHHHHHHh----------cCCeEEEEcCcccccccCCCCCCCCChHH
Q 005304 296 S---GSEFV----------EMF--VGVGASRVRDLFKKAKE----------NAPCIVFVDEIDAVGRQRGTGIGGGNDER 350 (703)
Q Consensus 296 s---~se~~----------~~~--~G~~~~~ir~lF~~A~~----------~aP~ILfIDEID~L~~~r~~~~~~~~~e~ 350 (703)
+ |.... +.+ .......++.++..+.. ....|||||||+.+.. +.
T Consensus 143 npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~-r~---------- 211 (637)
T TIGR00602 143 NPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY-RD---------- 211 (637)
T ss_pred hhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch-hh----------
Confidence 1 11000 000 01122344555555532 2456999999998742 11
Q ss_pred HHHHHHHHh-hhcCccCCCCeEEEEecC-Ccc--------------cccccccCCCccceeeeecCCChhhHHHHHHHHh
Q 005304 351 EQTLNQLLT-EMDGFEGNTGIIVIAATN-RAD--------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG 414 (703)
Q Consensus 351 ~~~l~~LL~-~ld~~~~~~~ViVIaaTN-~p~--------------~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l 414 (703)
...+..+|. ... ....+.+|++++ .+. .|.+++++.-|. .+|.|.+.......+.|+..+
T Consensus 212 ~~~lq~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl 287 (637)
T TIGR00602 212 TRALHEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIV 287 (637)
T ss_pred HHHHHHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHH
Confidence 113333433 111 122333444333 121 133566642244 378999999999766666655
Q ss_pred cCCC--------CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH-------hCCCCcCHHHHHHHHHHHHcCcC--C
Q 005304 415 SNKK--------FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGR-------RGKAAISSKEIDDSIDRIVAGME--G 477 (703)
Q Consensus 415 ~~~~--------l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r-------~~~~~It~~di~~Al~~v~~g~~--~ 477 (703)
.... ......+..|+.. +.+|++.+++.-...+.+ .+...++..++..+..+...-.. .
T Consensus 288 ~~E~~~~~~~~~~p~~~~l~~I~~~----s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e~ 363 (637)
T TIGR00602 288 TIEAKKNGEKIKVPKKTSVELLCQG----CSGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSNNEN 363 (637)
T ss_pred HhhhhccccccccCCHHHHHHHHHh----CCChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCchhH
Confidence 4321 1112235566664 445777777665554332 23345555555555433211100 0
Q ss_pred ccc--ccCCcchhhhHHHHHHHHHHhhc
Q 005304 478 TVM--TDGKSKSLVAYHEVGHAICGTLT 503 (703)
Q Consensus 478 ~~~--~~~~~~~~va~hEaGhAlv~~~~ 503 (703)
..+ ....+..+..+|-.|..|....-
T Consensus 364 ~~l~~~~~rd~sl~lfhalgkily~Kr~ 391 (637)
T TIGR00602 364 QEIQALGGKDVSLFLFRALGKILYCKRA 391 (637)
T ss_pred HHHHhhccccchhHHHHHhChhhccccc
Confidence 111 12334456778888888765544
No 186
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=1e-09 Score=118.25 Aligned_cols=170 Identities=15% Similarity=0.265 Sum_probs=117.2
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--------EEEeechhH
Q 005304 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------FFSISGSEF 300 (703)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p--------fi~is~se~ 300 (703)
+|+||+|++.+++.+.+.+.. .+.|+.+||+||+|+|||++|+++|..+-+. +..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 699999999999988877632 3456689999999999999999999976331 22222210
Q ss_pred HHHHhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 005304 301 VEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (703)
Q Consensus 301 ~~~~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaT 376 (703)
. ...+...+|++.+.+.. ....|++||++|.+ .....|.||..++.. ..++++|.+|
T Consensus 70 -~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m--------------~~~a~naLLK~LEep--p~~t~~il~~ 130 (313)
T PRK05564 70 -K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM--------------TEQAQNAFLKTIEEP--PKGVFIILLC 130 (313)
T ss_pred -C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhc--------------CHHHHHHHHHHhcCC--CCCeEEEEEe
Confidence 0 11233457777665432 23459999999998 234577888888853 4456666666
Q ss_pred CCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCC
Q 005304 377 NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGF 435 (703)
Q Consensus 377 N~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~ 435 (703)
+.++.+-+.+++ |. ..+++..|+.++....+...... .+ +..+..++..+.|-
T Consensus 131 ~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~l~~~~~g~ 183 (313)
T PRK05564 131 ENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--IK-EEEKKSAIAFSDGI 183 (313)
T ss_pred CChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--CC-HHHHHHHHHHcCCC
Confidence 778999999998 66 48899999999888888765532 21 22244566655553
No 187
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.09 E-value=1.1e-10 Score=117.52 Aligned_cols=142 Identities=27% Similarity=0.396 Sum_probs=69.1
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc--------------------
Q 005304 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------------------- 288 (703)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-------------------- 288 (703)
.|+||.|++.+|..+.-...- .+++||+||||||||++|+++..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG--------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG--------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC--------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHcC--------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 489999999999988765531 2489999999999999999998733
Q ss_pred --------CCCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhh
Q 005304 289 --------GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 360 (703)
Q Consensus 289 --------~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ 360 (703)
..||....-+.-....+|.+....-..+..|. ..|||+||+..+ ...++..|+.-
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh---~GVLflDE~~ef--------------~~~vld~Lr~p 129 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAH---RGVLFLDELNEF--------------DRSVLDALRQP 129 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGT---TSEEEECETTTS---------------HHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhc---CCEEEechhhhc--------------CHHHHHHHHHH
Confidence 12444443332222333332211112222332 259999999877 34566777666
Q ss_pred hcCc-----------cCCCCeEEEEecCCc-----------------------ccccccccCCCccceeeeecCCCh
Q 005304 361 MDGF-----------EGNTGIIVIAATNRA-----------------------DILDSALLRPGRFDRQVTVDVPDI 403 (703)
Q Consensus 361 ld~~-----------~~~~~ViVIaaTN~p-----------------------~~LD~aLlRpgRfdr~I~i~~Pd~ 403 (703)
|+.- .-..++++|+|+|.- ..+...++. |||-++.++..+.
T Consensus 130 le~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~ 204 (206)
T PF01078_consen 130 LEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSY 204 (206)
T ss_dssp HHHSBEEEEETTEEEEEB--EEEEEEE-S------------------------------------------------
T ss_pred HHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence 6432 112368999999841 134445566 7776666665543
No 188
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.4e-09 Score=120.11 Aligned_cols=160 Identities=25% Similarity=0.364 Sum_probs=113.6
Q ss_pred HHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEee-chhHHHHHhhhhhhHHHHHHHHH
Q 005304 241 QDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS-GSEFVEMFVGVGASRVRDLFKKA 319 (703)
Q Consensus 241 ~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is-~se~~~~~~G~~~~~ir~lF~~A 319 (703)
++-..+++..++++++. -..+||+||||+|||.||..+|...+.||+.+- ..+.+..........++..|+.|
T Consensus 521 ~~G~llv~qvk~s~~s~------lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 521 DDGKLLVQQVKNSERSP------LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDA 594 (744)
T ss_pred hhHHHHHHHhhccccCc------ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHh
Confidence 33344556666666432 348999999999999999999999999999764 44444433344456789999999
Q ss_pred HhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCC-CeEEEEecCCcccccc-cccCCCccceeee
Q 005304 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT-GIIVIAATNRADILDS-ALLRPGRFDRQVT 397 (703)
Q Consensus 320 ~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~-~ViVIaaTN~p~~LD~-aLlRpgRfdr~I~ 397 (703)
++..-+||++|+|+.|..--. -+...+..++..|+..+...++.. +.+|++||.+.+.|.. .++. .|+..++
T Consensus 595 YkS~lsiivvDdiErLiD~vp----IGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~ 668 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVP----IGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIH 668 (744)
T ss_pred hcCcceEEEEcchhhhhcccc----cCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheee
Confidence 998889999999999864322 245666777778888777665544 5777888877665543 3455 7888888
Q ss_pred ecCCCh-hhHHHHHHH
Q 005304 398 VDVPDI-RGRTEILKV 412 (703)
Q Consensus 398 i~~Pd~-~eR~~IL~~ 412 (703)
+|.... ++..+++..
T Consensus 669 Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 669 VPNLTTGEQLLEVLEE 684 (744)
T ss_pred cCccCchHHHHHHHHH
Confidence 776654 445555543
No 189
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.7e-10 Score=118.33 Aligned_cols=132 Identities=28% Similarity=0.431 Sum_probs=87.5
Q ss_pred cccccchHHHHHHHHHHHH----hcCchhhhhccCCCC-ceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH-HH
Q 005304 231 DDVAGVDEAKQDFMEVVEF----LKKPERFTAIGARIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MF 304 (703)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~----l~~p~~~~~lg~~~p-~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~-~~ 304 (703)
+=|+|++.+|+.|.-.|-. +.+.+ ..-..... .++||.||.|||||+||+.+|+.+++||...++..+.+ .|
T Consensus 61 ~YVIGQe~AKKvLsVAVYNHYKRl~~~~--~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGY 138 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYNHYKRLNNKE--DNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGY 138 (408)
T ss_pred hheecchhhhceeeeeehhHHHHHhccC--CCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccc
Confidence 3478999999876544421 21111 00012222 37999999999999999999999999999999999886 58
Q ss_pred hhhhhhHHH-HHHHHH----HhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCc
Q 005304 305 VGVGASRVR-DLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 364 (703)
Q Consensus 305 ~G~~~~~ir-~lF~~A----~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~ 364 (703)
+|+...++- .++..| .+....||+|||||.++++..+.+-.-+-..+.+...||..++|-
T Consensus 139 VGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 139 VGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 887666543 333332 122346999999999987765433222222344556677777763
No 190
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.05 E-value=3.7e-09 Score=113.17 Aligned_cols=148 Identities=24% Similarity=0.332 Sum_probs=100.3
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcC---------------------
Q 005304 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--------------------- 289 (703)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~--------------------- 289 (703)
++++|.+++...+...+..-. +.|..+||+||||+|||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESG----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHhcC----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 357777777777666554221 3445799999999999999999999886
Q ss_pred ---CCEEEeechhHHHHHhhhhhhHHHHHHHHHHhc----CCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc
Q 005304 290 ---VPFFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (703)
Q Consensus 290 ---~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~----aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld 362 (703)
-.|+.++.++-... ......++++-+..... ..-|++|||+|.+- ....|.++..++
T Consensus 71 ~~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt--------------~~A~nallk~lE 134 (325)
T COG0470 71 GNHPDFLELNPSDLRKI--DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT--------------EDAANALLKTLE 134 (325)
T ss_pred cCCCceEEecccccCCC--cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh--------------HHHHHHHHHHhc
Confidence 35666666553321 12234455554444322 34699999999992 356788888887
Q ss_pred CccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHH
Q 005304 363 GFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEI 409 (703)
Q Consensus 363 ~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~I 409 (703)
.. ..+..+|.+||.++.+-+.+++ |. ..+.|++|+...+...
T Consensus 135 ep--~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 135 EP--PKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAW 176 (325)
T ss_pred cC--CCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHH
Confidence 44 4567888889999999888888 66 4667776554443333
No 191
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.05 E-value=2.2e-09 Score=121.90 Aligned_cols=209 Identities=24% Similarity=0.319 Sum_probs=128.1
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcC------------------
Q 005304 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG------------------ 289 (703)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~------------------ 289 (703)
..|.++.|+..+++.+.-.+ .....++|+||||+|||++++.+++...
T Consensus 188 ~d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 47889999888776543111 1234799999999999999999987431
Q ss_pred ----------CCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHh
Q 005304 290 ----------VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (703)
Q Consensus 290 ----------~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~ 359 (703)
.||...+.+.-....+|.+...-...+..|.. .+|||||++.+ +. .++..|++
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----------~~---~~~~~L~~ 316 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----------ER---RTLDALRE 316 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----------CH---HHHHHHHH
Confidence 12221111111112334332222345565544 49999999887 22 34444444
Q ss_pred hhcCcc-----------CCCCeEEEEecCCcc---------------------cccccccCCCccceeeeecCCChhh--
Q 005304 360 EMDGFE-----------GNTGIIVIAATNRAD---------------------ILDSALLRPGRFDRQVTVDVPDIRG-- 405 (703)
Q Consensus 360 ~ld~~~-----------~~~~ViVIaaTN~p~---------------------~LD~aLlRpgRfdr~I~i~~Pd~~e-- 405 (703)
.|+.-. ...++.+|+|+|... .+..++++ |||.++.++.|+.++
T Consensus 317 ~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~ 394 (506)
T PRK09862 317 PIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILS 394 (506)
T ss_pred HHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHh
Confidence 442211 134689999999742 46678888 999999999885321
Q ss_pred --------HHHHHHHH--------hcCCCCCcccc-------------HH---HHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005304 406 --------RTEILKVH--------GSNKKFDADVS-------------LD---VIAMRTPGFSGADLANLLNEAAILAGR 453 (703)
Q Consensus 406 --------R~~IL~~~--------l~~~~l~~dvd-------------l~---~lA~~t~G~sgadL~~lv~eAa~~A~r 453 (703)
...|-+.. .++..+...+. .. .-+....|.|.+....+++-|...|.-
T Consensus 395 ~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL 474 (506)
T PRK09862 395 KTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADI 474 (506)
T ss_pred cccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 11121100 00000010000 11 112234578999999999999999999
Q ss_pred hCCCCcCHHHHHHHHH
Q 005304 454 RGKAAISSKEIDDSID 469 (703)
Q Consensus 454 ~~~~~It~~di~~Al~ 469 (703)
++++.|+.+|+.+|+.
T Consensus 475 ~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 475 DQSDIITRQHLQEAVS 490 (506)
T ss_pred cCCCCCCHHHHHHHHH
Confidence 9999999999999986
No 192
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=3.8e-09 Score=113.88 Aligned_cols=183 Identities=15% Similarity=0.208 Sum_probs=123.5
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------------
Q 005304 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------------- 291 (703)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p----------------- 291 (703)
.|++|+|++++++.+.+.+..- +.|..+||+||+|+||+++|+++|..+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 5899999999999999888542 345689999999999999999999876321
Q ss_pred -EEEeechhHH------HH---Hhh--------hhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChH
Q 005304 292 -FFSISGSEFV------EM---FVG--------VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDE 349 (703)
Q Consensus 292 -fi~is~se~~------~~---~~G--------~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e 349 (703)
++.+...... .. ..| .....+|++.+.+.. ....|++||++|.+
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-------------- 136 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-------------- 136 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc--------------
Confidence 1222111000 00 000 112356666555532 33469999999998
Q ss_pred HHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHH
Q 005304 350 REQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIA 429 (703)
Q Consensus 350 ~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA 429 (703)
.....|.||..|+... +.++|..|+.++.|-|.+++ |. ..+.|++|+.++..++++........ +.+...++
T Consensus 137 ~~~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 137 NEAAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred CHHHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 2346788888888654 33566677889999999999 77 57899999999999999876432211 12245677
Q ss_pred HhCCCCcHHHHHHHHH
Q 005304 430 MRTPGFSGADLANLLN 445 (703)
Q Consensus 430 ~~t~G~sgadL~~lv~ 445 (703)
....| +++...++++
T Consensus 209 ~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 209 ALAQG-SPGAAIANIE 223 (314)
T ss_pred HHcCC-CHHHHHHHHH
Confidence 76665 5555555444
No 193
>PRK04132 replication factor C small subunit; Provisional
Probab=99.04 E-value=3.4e-09 Score=126.21 Aligned_cols=171 Identities=20% Similarity=0.235 Sum_probs=124.7
Q ss_pred eEEEEc--CCCChHHHHHHHHHHhc-----CCCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcC------CeEEEEcCc
Q 005304 266 GVLLVG--PPGTGKTLLAKAIAGEA-----GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENA------PCIVFVDEI 332 (703)
Q Consensus 266 gvLL~G--PpGTGKT~LArAlA~e~-----~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~a------P~ILfIDEI 332 (703)
.-+..| |++.|||++|+++|+++ +.+++.+|+++.. +...+|++.+.+.... ..|+||||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 345668 99999999999999997 5689999998743 2245677666554332 259999999
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHH
Q 005304 333 DAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKV 412 (703)
Q Consensus 333 D~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~ 412 (703)
|.+- ....+.|+..|+.. ..++.+|.+||.++.+.+++++ |+ ..+.|++|+.++....++.
T Consensus 640 D~Lt--------------~~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 640 DALT--------------QDAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred ccCC--------------HHHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 9992 23567778777754 3567899999999999999998 76 5789999999998888887
Q ss_pred HhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 005304 413 HGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (703)
Q Consensus 413 ~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~A 467 (703)
.+.+.++. ++..+..++..+.| +.+..-++++.++.. ...|+.+++...
T Consensus 701 I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~~~-----~~~It~~~V~~~ 750 (846)
T PRK04132 701 IAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAAL-----DDKITDENVFLV 750 (846)
T ss_pred HHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh-----cCCCCHHHHHHH
Confidence 77654433 33457888888876 456666666655432 235777666544
No 194
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.02 E-value=1.4e-09 Score=109.68 Aligned_cols=204 Identities=21% Similarity=0.328 Sum_probs=121.6
Q ss_pred cccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-C----CCEEE
Q 005304 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-G----VPFFS 294 (703)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-~----~pfi~ 294 (703)
.|.+++++..+.||+|.++..+.|.-+...-..| +++|.||||||||+-+.++|+++ | --+.+
T Consensus 16 ~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP------------~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLE 83 (333)
T KOG0991|consen 16 PWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMP------------NLIISGPPGTGKTTSILCLARELLGDSYKEAVLE 83 (333)
T ss_pred hHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCC------------ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhh
Confidence 4889999999999999999999888777655444 59999999999999999999987 2 23556
Q ss_pred eechhHHHHHhhhhhhHHHH---HHHHHHhcC-C---eEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCC
Q 005304 295 ISGSEFVEMFVGVGASRVRD---LFKKAKENA-P---CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (703)
Q Consensus 295 is~se~~~~~~G~~~~~ir~---lF~~A~~~a-P---~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~ 367 (703)
++.|+-. +-..+|. .|.+-+-.- | .||++||.|++. ...+|.+..- |+-+.+
T Consensus 84 LNASdeR------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT-----------~gAQQAlRRt---MEiyS~- 142 (333)
T KOG0991|consen 84 LNASDER------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT-----------AGAQQALRRT---MEIYSN- 142 (333)
T ss_pred ccCcccc------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh-----------hHHHHHHHHH---HHHHcc-
Confidence 6665422 2233443 354443322 2 499999999982 2234444433 332222
Q ss_pred CCeEEEEecCCcccccccccCCCccceeeeecCCChhh-HHHHHHHHh-cCCCCCccccHHHHHHhCCCCcHHHHHHHHH
Q 005304 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG-RTEILKVHG-SNKKFDADVSLDVIAMRTPGFSGADLANLLN 445 (703)
Q Consensus 368 ~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~e-R~~IL~~~l-~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~ 445 (703)
...+..++|..+.+-+.+.+ |+- .+.+...+..+ ..++++..- .+.+.. +.-++.+.--..| |.++.+|
T Consensus 143 -ttRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt-~dgLeaiifta~G----DMRQalN 213 (333)
T KOG0991|consen 143 -TTRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYT-DDGLEAIIFTAQG----DMRQALN 213 (333)
T ss_pred -cchhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCC-cchHHHhhhhccc----hHHHHHH
Confidence 34567778988887777776 543 23333333333 333333332 222222 2225555544443 5555555
Q ss_pred HHHHHHHHhCCCCcCHHHHHHH
Q 005304 446 EAAILAGRRGKAAISSKEIDDS 467 (703)
Q Consensus 446 eAa~~A~r~~~~~It~~di~~A 467 (703)
.-. +.-.+-..|+.+.+-+.
T Consensus 214 nLQ--st~~g~g~Vn~enVfKv 233 (333)
T KOG0991|consen 214 NLQ--STVNGFGLVNQENVFKV 233 (333)
T ss_pred HHH--HHhccccccchhhhhhc
Confidence 432 33345556666554443
No 195
>PRK08116 hypothetical protein; Validated
Probab=99.00 E-value=3.1e-09 Score=112.20 Aligned_cols=129 Identities=23% Similarity=0.350 Sum_probs=78.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHHhhh----hhhHHHHHHHHHHhcCCeEEEEcCccccc
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV----GASRVRDLFKKAKENAPCIVFVDEIDAVG 336 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~~G~----~~~~ir~lF~~A~~~aP~ILfIDEID~L~ 336 (703)
+.|++|+|+||||||+||.++|+++ +.++++++.+++...+... ......++++... ...+|+|||++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4589999999999999999999975 8899999999887654321 1122233444332 33599999996531
Q ss_pred ccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCc-cc----ccccccCCCcc---ceeeeecCCChhhHHH
Q 005304 337 RQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA-DI----LDSALLRPGRF---DRQVTVDVPDIRGRTE 408 (703)
Q Consensus 337 ~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p-~~----LD~aLlRpgRf---dr~I~i~~Pd~~eR~~ 408 (703)
..++....+..++... .. .+..+|.|||.+ +. ++..+.+ |+ ...|.+.-||. |.+
T Consensus 192 ---------~t~~~~~~l~~iin~r---~~-~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~ 254 (268)
T PRK08116 192 ---------DTEWAREKVYNIIDSR---YR-KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RKE 254 (268)
T ss_pred ---------CCHHHHHHHHHHHHHH---HH-CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHH
Confidence 2344444444554432 21 233466777753 33 4556666 54 22455555554 444
Q ss_pred HHH
Q 005304 409 ILK 411 (703)
Q Consensus 409 IL~ 411 (703)
+.+
T Consensus 255 ~~~ 257 (268)
T PRK08116 255 IAK 257 (268)
T ss_pred HHH
Confidence 444
No 196
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.00 E-value=1.4e-09 Score=107.05 Aligned_cols=122 Identities=28% Similarity=0.410 Sum_probs=79.0
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHH-----H
Q 005304 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM-----F 304 (703)
Q Consensus 233 v~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~-----~ 304 (703)
++|.+...+++.+.+..+... +.+|||+|++||||+.+|+++-+.. +.||+.++|+.+.+. +
T Consensus 1 liG~s~~m~~~~~~~~~~a~~----------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS----------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS----------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCC----------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 578888888888877765433 3489999999999999999997654 679999999876532 3
Q ss_pred hhhhh-------hHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc--Cc----cCCCCeE
Q 005304 305 VGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GF----EGNTGII 371 (703)
Q Consensus 305 ~G~~~-------~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~----~~~~~Vi 371 (703)
.|... ..-..+|+.|... +||||||+.+ +...+..+.++|+.-. .. ....++.
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVR 136 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--EE
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhh-----------HHHHHHHHHHHHhhchhccccccccccccce
Confidence 33311 1123677777554 8999999999 3344555555554321 11 1123799
Q ss_pred EEEecCC
Q 005304 372 VIAATNR 378 (703)
Q Consensus 372 VIaaTN~ 378 (703)
+|++|+.
T Consensus 137 iI~st~~ 143 (168)
T PF00158_consen 137 IIASTSK 143 (168)
T ss_dssp EEEEESS
T ss_pred EEeecCc
Confidence 9999985
No 197
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=7.2e-09 Score=112.52 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=107.1
Q ss_pred ccccccc-chHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------------
Q 005304 229 TFDDVAG-VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------------- 291 (703)
Q Consensus 229 ~f~dv~G-~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p---------------- 291 (703)
.|+.|.| ++.+++.+...+.. .+.|..+||+||+|+||+++|+++|+..-++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4788888 88898888877742 2456689999999999999999999876432
Q ss_pred --------EEEeechhHHHHHhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHh
Q 005304 292 --------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (703)
Q Consensus 292 --------fi~is~se~~~~~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~ 359 (703)
+.++... . ...+...+|++.+.+.. ...-|++|||+|.+ .....|.||.
T Consensus 72 ~~~~~hpD~~~i~~~---~--~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~--------------~~~a~NaLLK 132 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---G--QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM--------------TASAANSLLK 132 (329)
T ss_pred HhcCCCCCEEEeccc---c--ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh--------------CHHHHHHHHH
Confidence 1121110 0 01123456776665532 22359999999998 2346788999
Q ss_pred hhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHH
Q 005304 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKV 412 (703)
Q Consensus 360 ~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~ 412 (703)
.++. +..++++|.+|+.++.|-+.+++ |. ..+++..|+.++..++++.
T Consensus 133 ~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEE--PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcC--CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 8885 34567777788888899999998 76 4789999999888777764
No 198
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.98 E-value=3.6e-09 Score=114.80 Aligned_cols=83 Identities=22% Similarity=0.296 Sum_probs=61.7
Q ss_pred ccc-ccccchHHHHHHHHHHHHhcCchhhhhccCC-CCceEEEEcCCCChHHHHHHHHHHhcCC-------CEEEeec--
Q 005304 229 TFD-DVAGVDEAKQDFMEVVEFLKKPERFTAIGAR-IPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSISG-- 297 (703)
Q Consensus 229 ~f~-dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~-~p~gvLL~GPpGTGKT~LArAlA~e~~~-------pfi~is~-- 297 (703)
-|+ |+.|++++++++.+.+.... .|.. ..+.++|+||||+|||++|++||+.++. |++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a-------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAA-------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHH-------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 466 99999999876665554332 1222 3467999999999999999999999976 9999988
Q ss_pred --hhHHHHHhhhhhhHHHHHHHH
Q 005304 298 --SEFVEMFVGVGASRVRDLFKK 318 (703)
Q Consensus 298 --se~~~~~~G~~~~~ir~lF~~ 318 (703)
+.+.+..++......|+.|.+
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~~~ 143 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDLED 143 (361)
T ss_pred CCCCCccCCcccCCHHHHHHHHH
Confidence 777666666666666655544
No 199
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=6e-09 Score=112.97 Aligned_cols=150 Identities=19% Similarity=0.254 Sum_probs=105.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCC------------------------EEEeechhHHHHHhhhhhhHHHHHH
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------------------------FFSISGSEFVEMFVGVGASRVRDLF 316 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p------------------------fi~is~se~~~~~~G~~~~~ir~lF 316 (703)
.+.|+.+||+||+|+|||++|+++|..+.+. ++.+...+ .-...+.+.+|++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~---~~~~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE---ADKTIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC---CCCCCCHHHHHHHH
Confidence 4568899999999999999999999977441 12221100 00012346677777
Q ss_pred HHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCcc
Q 005304 317 KKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRF 392 (703)
Q Consensus 317 ~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRf 392 (703)
+.+.. ...-|++||++|.+ .....|.||+.++.. ..++++|.+|+.++.|.|.+++ |+
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m--------------~~~aaNaLLK~LEEP--p~~~~fiL~t~~~~~ll~TI~S--Rc 157 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAM--------------NRNAANALLKSLEEP--SGDTVLLLISHQPSRLLPTIKS--RC 157 (328)
T ss_pred HHHhhccccCCCeEEEECChhhC--------------CHHHHHHHHHHHhCC--CCCeEEEEEECChhhCcHHHHh--hc
Confidence 66643 33468899999999 245778899988853 4578888999999999999999 88
Q ss_pred ceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCC
Q 005304 393 DRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGF 435 (703)
Q Consensus 393 dr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~ 435 (703)
. .+.|++|+.++-.+.+...... ..+.+...++....|-
T Consensus 158 ~-~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gs 196 (328)
T PRK05707 158 Q-QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGS 196 (328)
T ss_pred e-eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCC
Confidence 5 5899999999888888765421 1222344556666653
No 200
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.1e-09 Score=120.87 Aligned_cols=210 Identities=26% Similarity=0.349 Sum_probs=123.0
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcC-----------------
Q 005304 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG----------------- 289 (703)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~----------------- 289 (703)
...|.||.|++.+|..+.....- .+++|++||||||||++|+.+..-+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG--------------gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG--------------GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc--------------CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 45899999999999988765532 23799999999999999999865320
Q ss_pred ------------CCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHH
Q 005304 290 ------------VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (703)
Q Consensus 290 ------------~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~L 357 (703)
.||..-..+.-....+|.+..---.-...| ...||||||+-.+ ..++++.|
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLA---H~GVLFLDElpef--------------~~~iLe~L 303 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLA---HNGVLFLDELPEF--------------KRSILEAL 303 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeee---cCCEEEeeccchh--------------hHHHHHHH
Confidence 122211111111112222200000001111 1259999998666 34678877
Q ss_pred HhhhcCcc-----------CCCCeEEEEecCCcc-----------------------cccccccCCCccceeeeecCCCh
Q 005304 358 LTEMDGFE-----------GNTGIIVIAATNRAD-----------------------ILDSALLRPGRFDRQVTVDVPDI 403 (703)
Q Consensus 358 L~~ld~~~-----------~~~~ViVIaaTN~p~-----------------------~LD~aLlRpgRfdr~I~i~~Pd~ 403 (703)
.+=|+.-. -..++.+|+|+|..- .|...+++ |+|..++++.++.
T Consensus 304 R~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~ 381 (490)
T COG0606 304 REPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSA 381 (490)
T ss_pred hCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCH
Confidence 76665321 123578889998411 24445667 9999999988764
Q ss_pred hhH--------------HHHHHHH----hcCCCC--Cc----------------cccHHHHHHhCCCCcHHHHHHHHHHH
Q 005304 404 RGR--------------TEILKVH----GSNKKF--DA----------------DVSLDVIAMRTPGFSGADLANLLNEA 447 (703)
Q Consensus 404 ~eR--------------~~IL~~~----l~~~~l--~~----------------dvdl~~lA~~t~G~sgadL~~lv~eA 447 (703)
.++ ..+.+.+ .+.... .. +.++...+-..-++|.+....+++-|
T Consensus 382 ~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKva 461 (490)
T COG0606 382 GELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVA 461 (490)
T ss_pred HHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 333 1122111 111111 11 11222333445567777777777778
Q ss_pred HHHHHHhCCCCcCHHHHHHHHH
Q 005304 448 AILAGRRGKAAISSKEIDDSID 469 (703)
Q Consensus 448 a~~A~r~~~~~It~~di~~Al~ 469 (703)
..+|--.+...|...|+.+|+.
T Consensus 462 rTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 462 RTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred hhhhcccCcchhhHHHHHHHHh
Confidence 7777777777788888777764
No 201
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.95 E-value=1.5e-09 Score=107.16 Aligned_cols=110 Identities=36% Similarity=0.451 Sum_probs=73.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC----CEEEeechhHHHHHhhhhhhHHHHHHHH------HHhcCCeEEEEcCccc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGV----PFFSISGSEFVEMFVGVGASRVRDLFKK------AKENAPCIVFVDEIDA 334 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~----pfi~is~se~~~~~~G~~~~~ir~lF~~------A~~~aP~ILfIDEID~ 334 (703)
..+||+||+|+|||.+|+++|..+.. +++.++++++.+. ......+..++.. +... .||||||||.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~--gVVllDEidK 79 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEG--GVVLLDEIDK 79 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHH--TEEEEETGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccch--hhhhhHHHhh
Confidence 36899999999999999999999996 9999999998761 1111122222211 1122 3999999999
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHhhhcCcc---------CCCCeEEEEecCCccc
Q 005304 335 VGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------GNTGIIVIAATNRADI 381 (703)
Q Consensus 335 L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~---------~~~~ViVIaaTN~p~~ 381 (703)
..+. ...+.+-....+.+.||..+|+-. .-.++++|+|+|.-..
T Consensus 80 a~~~---~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 80 AHPS---NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp CSHT---TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred cccc---ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 9654 122233444566777777775321 1236899999997443
No 202
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.9e-09 Score=111.52 Aligned_cols=84 Identities=31% Similarity=0.434 Sum_probs=63.4
Q ss_pred CeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccC--------CCCeEEEEecC----CcccccccccCCCc
Q 005304 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--------NTGIIVIAATN----RADILDSALLRPGR 391 (703)
Q Consensus 324 P~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~--------~~~ViVIaaTN----~p~~LD~aLlRpgR 391 (703)
-.|+||||||.++.+.+.+ +..-.++.+...||-.++|..- ...++|||+.- .|..|-|.|.- |
T Consensus 251 ~GIvFIDEIDKIa~~~~~g--~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--R 326 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSG--GPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--R 326 (444)
T ss_pred cCeEEEehhhHHHhcCCCC--CCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--C
Confidence 3699999999998765532 2244566677788887776532 34689998873 57888888865 9
Q ss_pred cceeeeecCCChhhHHHHHH
Q 005304 392 FDRQVTVDVPDIRGRTEILK 411 (703)
Q Consensus 392 fdr~I~i~~Pd~~eR~~IL~ 411 (703)
|--.+++...+.+.-.+||.
T Consensus 327 fPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 327 FPIRVELDALTKEDFERILT 346 (444)
T ss_pred CceEEEcccCCHHHHHHHHc
Confidence 99999999999988888774
No 203
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.92 E-value=5e-09 Score=117.84 Aligned_cols=207 Identities=20% Similarity=0.292 Sum_probs=123.0
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHHh
Q 005304 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV 305 (703)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~~ 305 (703)
.+.+++|.+...+.+.+.+..+... ..+++|+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPS----------DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 4667899988888887777654332 2379999999999999999997654 57999999987643321
Q ss_pred -----hhh-------hhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc--Ccc----CC
Q 005304 306 -----GVG-------ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE----GN 367 (703)
Q Consensus 306 -----G~~-------~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~~----~~ 367 (703)
|.. .......|+.| ...+||||||+.+ +...+..+.+++..-. ... ..
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~~ 272 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDL-----------PLNLQAKLLRFLQERVIERLGGREEIP 272 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhC-----------CHHHHHHHHHHHhhCeEEeCCCCceee
Confidence 110 00111123333 3468999999999 3334444444443211 000 12
Q ss_pred CCeEEEEecCCcc--cccccccCCC---ccceeeeecCCChhhHHH----HHHHHh----cCC-----CCCccccHHHHH
Q 005304 368 TGIIVIAATNRAD--ILDSALLRPG---RFDRQVTVDVPDIRGRTE----ILKVHG----SNK-----KFDADVSLDVIA 429 (703)
Q Consensus 368 ~~ViVIaaTN~p~--~LD~aLlRpg---Rfdr~I~i~~Pd~~eR~~----IL~~~l----~~~-----~l~~dvdl~~lA 429 (703)
.++.+|++|+..- .+....+++. |+. .+.+.+|..++|.+ +++.++ ... .+++ ..+..|.
T Consensus 273 ~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~-~a~~~L~ 350 (445)
T TIGR02915 273 VDVRIVCATNQDLKRMIAEGTFREDLFYRIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTD-DALRALE 350 (445)
T ss_pred eceEEEEecCCCHHHHHHcCCccHHHHHHhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCH-HHHHHHH
Confidence 3688999987641 1111222221 332 56888999999876 222222 211 1222 2245555
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Q 005304 430 MRTPGFSGADLANLLNEAAILAGRRGKAAISSKEI 464 (703)
Q Consensus 430 ~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di 464 (703)
....-.+.++|++++++|...+ ....|+.+++
T Consensus 351 ~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l 382 (445)
T TIGR02915 351 AHAWPGNVRELENKVKRAVIMA---EGNQITAEDL 382 (445)
T ss_pred hCCCCChHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 5554457889999999887654 2346666654
No 204
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.90 E-value=6.8e-09 Score=113.31 Aligned_cols=160 Identities=26% Similarity=0.422 Sum_probs=103.1
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEe----
Q 005304 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSI---- 295 (703)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-------~~pfi~i---- 295 (703)
++.|.-++|++..|..|.-. .-+|+ -.|+||-|+.|||||+++|+||.-+ |+||-.=
T Consensus 13 ~~pf~aivGqd~lk~aL~l~---av~P~---------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN---AVDPQ---------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhh---hcccc---------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 56799999999999866532 22332 1389999999999999999999865 3332100
Q ss_pred --echhH-------------------HHHHhhhhhhHHH------HHHHH----------HHhcCCeEEEEcCccccccc
Q 005304 296 --SGSEF-------------------VEMFVGVGASRVR------DLFKK----------AKENAPCIVFVDEIDAVGRQ 338 (703)
Q Consensus 296 --s~se~-------------------~~~~~G~~~~~ir------~lF~~----------A~~~aP~ILfIDEID~L~~~ 338 (703)
.|.+. ++.-.|.++.++- ...+. |+. ...|+++||+..|
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A-nRGIlYvDEvnlL--- 156 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA-NRGILYVDEVNLL--- 156 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc-cCCEEEEeccccc---
Confidence 11111 1111233333221 11110 111 1359999999888
Q ss_pred CCCCCCCCChHHHHHHHHHHhhhcC---------c--cCCCCeEEEEecCCcc-cccccccCCCccceeeeecCC-Chhh
Q 005304 339 RGTGIGGGNDEREQTLNQLLTEMDG---------F--EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVP-DIRG 405 (703)
Q Consensus 339 r~~~~~~~~~e~~~~l~~LL~~ld~---------~--~~~~~ViVIaaTN~p~-~LD~aLlRpgRfdr~I~i~~P-d~~e 405 (703)
..++++.||+.+.. + ....++++|+|.|..+ .|-|.|+. ||...|.+..| +.++
T Consensus 157 -----------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~ 223 (423)
T COG1239 157 -----------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEE 223 (423)
T ss_pred -----------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHH
Confidence 23455666655432 2 2234799999999754 68888998 99999999877 6888
Q ss_pred HHHHHHHHhc
Q 005304 406 RTEILKVHGS 415 (703)
Q Consensus 406 R~~IL~~~l~ 415 (703)
|.+|+++.+.
T Consensus 224 rv~Ii~r~~~ 233 (423)
T COG1239 224 RVEIIRRRLA 233 (423)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 205
>PRK08181 transposase; Validated
Probab=98.89 E-value=2.4e-08 Score=105.34 Aligned_cols=98 Identities=20% Similarity=0.320 Sum_probs=65.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHHhhh-hhhHHHHHHHHHHhcCCeEEEEcCcccccccCC
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRG 340 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~~G~-~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~ 340 (703)
.+++|+||||||||+||.+++.++ |..+++++..++.+.+... ........++.. ..+.+|+|||++.+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~---- 180 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT---- 180 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc----
Confidence 389999999999999999998754 8899999999988765322 112233444443 345799999998863
Q ss_pred CCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 341 TGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 341 ~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
..++....+.+++...-+ + + -+|.|||.
T Consensus 181 -----~~~~~~~~Lf~lin~R~~---~-~-s~IiTSN~ 208 (269)
T PRK08181 181 -----KDQAETSVLFELISARYE---R-R-SILITANQ 208 (269)
T ss_pred -----CCHHHHHHHHHHHHHHHh---C-C-CEEEEcCC
Confidence 233444566666654322 1 2 35666775
No 206
>PRK12377 putative replication protein; Provisional
Probab=98.87 E-value=2.2e-08 Score=104.38 Aligned_cols=99 Identities=20% Similarity=0.248 Sum_probs=66.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHHhhhhh--hHHHHHHHHHHhcCCeEEEEcCcccccccC
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVGA--SRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~~G~~~--~~ir~lF~~A~~~aP~ILfIDEID~L~~~r 339 (703)
.+++|+||||||||+||.|+|+++ +..+++++..++...+...-. ....++++.. ....+|+|||++...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~--- 176 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR--- 176 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC---
Confidence 489999999999999999999877 788999999888875432111 1122344443 345799999997752
Q ss_pred CCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 340 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 340 ~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
.++.....+.+++..-- +...-+|.|||.
T Consensus 177 ------~s~~~~~~l~~ii~~R~----~~~~ptiitSNl 205 (248)
T PRK12377 177 ------ETKNEQVVLNQIIDRRT----ASMRSVGMLTNL 205 (248)
T ss_pred ------CCHHHHHHHHHHHHHHH----hcCCCEEEEcCC
Confidence 23445566666665422 112335667885
No 207
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.85 E-value=3.7e-08 Score=117.14 Aligned_cols=128 Identities=22% Similarity=0.228 Sum_probs=76.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEeechhHHHHHh-hhhhhHH-HHHHHHHHhcCCeEEEEcCcc
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSEFVEMFV-GVGASRV-RDLFKKAKENAPCIVFVDEID 333 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~-------~~pfi~is~se~~~~~~-G~~~~~i-r~lF~~A~~~aP~ILfIDEID 333 (703)
-.-+|||+|+||||||.+|+++++-. |.++..+.+..+..... ..+...+ ...+..| ...++||||+|
T Consensus 491 gdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlA---dgGtL~IDEid 567 (915)
T PTZ00111 491 GIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLA---NGGVCCIDELD 567 (915)
T ss_pred CCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEc---CCCeEEecchh
Confidence 34489999999999999999998754 34555555544321000 0000000 0011112 23599999999
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHhhhcCcc-----------CCCCeEEEEecCCcc-------------cccccccCC
Q 005304 334 AVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GNTGIIVIAATNRAD-------------ILDSALLRP 389 (703)
Q Consensus 334 ~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~-----------~~~~ViVIaaTN~p~-------------~LD~aLlRp 389 (703)
.+ +...+.. |+..|+.-. -+..+.||||+|..+ .|+++|++
T Consensus 568 km-----------s~~~Q~a---LlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS- 632 (915)
T PTZ00111 568 KC-----------HNESRLS---LYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT- 632 (915)
T ss_pred hC-----------CHHHHHH---HHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh-
Confidence 98 2223333 444443211 235789999999742 47789999
Q ss_pred Cccceee-eecCCChhhHHHH
Q 005304 390 GRFDRQV-TVDVPDIRGRTEI 409 (703)
Q Consensus 390 gRfdr~I-~i~~Pd~~eR~~I 409 (703)
|||..+ .++.|+.+.=..|
T Consensus 633 -RFDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 633 -RFDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred -hhcEEEEecCCCChHHHHHH
Confidence 999854 5567776554444
No 208
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.83 E-value=1.5e-08 Score=118.04 Aligned_cols=100 Identities=20% Similarity=0.258 Sum_probs=63.4
Q ss_pred CeEEEEecCCc--ccccccccCCCccc---eeeeec--CCC-hhhHHHHHHHHhcCCC---CCccccH---HHHHH---h
Q 005304 369 GIIVIAATNRA--DILDSALLRPGRFD---RQVTVD--VPD-IRGRTEILKVHGSNKK---FDADVSL---DVIAM---R 431 (703)
Q Consensus 369 ~ViVIaaTN~p--~~LD~aLlRpgRfd---r~I~i~--~Pd-~~eR~~IL~~~l~~~~---l~~dvdl---~~lA~---~ 431 (703)
++.||+++|+. +.+||.|.. ||. ..+.++ .++ .+.+..+++...+... ....++- ..+.+ +
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 67899999874 567888888 775 344443 222 4445555554332211 1112222 22221 1
Q ss_pred CCC------CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 005304 432 TPG------FSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (703)
Q Consensus 432 t~G------~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~ 470 (703)
..| ...++|.+++++|...|..++...++.+|+.+|+.+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 122 346899999999999999999999999999988754
No 209
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.83 E-value=3.6e-08 Score=111.76 Aligned_cols=209 Identities=20% Similarity=0.312 Sum_probs=127.1
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHH-
Q 005304 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF- 304 (703)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~- 304 (703)
.+.+++|.+...+++.+.+..+.... ..++|+|++|||||++|+++.... +.||+.++|+.+.+..
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~----------~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSS----------ISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccC----------CeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 46789999988888887776544332 379999999999999999997765 5799999998764321
Q ss_pred ----hhhhhh-------HHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc-----Cc-cCC
Q 005304 305 ----VGVGAS-------RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD-----GF-EGN 367 (703)
Q Consensus 305 ----~G~~~~-------~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld-----~~-~~~ 367 (703)
.|.... .....|+.+ ....|||||||.+ ....+..+..++..-. +. ...
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~~ 271 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDM-----------PLDVQTRLLRVLADGQFYRVGGYAPVK 271 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccC-----------CHHHHHHHHHHHhcCcEEeCCCCCeEE
Confidence 111100 001123332 2458999999998 2333444444443211 00 112
Q ss_pred CCeEEEEecCCcc-------cccccccCCCccceeeeecCCChhhHHH----HHHHHhc----CC-----CCCccccHHH
Q 005304 368 TGIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHGS----NK-----KFDADVSLDV 427 (703)
Q Consensus 368 ~~ViVIaaTN~p~-------~LD~aLlRpgRfdr~I~i~~Pd~~eR~~----IL~~~l~----~~-----~l~~dvdl~~ 427 (703)
.++.+|+||+..- .+.+.|.. ||. .+.+.+|..++|.+ ++++++. .. .++++ .+..
T Consensus 272 ~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~ 347 (469)
T PRK10923 272 VDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPE-TEAA 347 (469)
T ss_pred eeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-HHHH
Confidence 3578999987531 22233333 342 57888888888866 3333322 11 12222 2455
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 428 IAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 428 lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
|.....-.+.++|++++++|...+ ....|+.+|+...+
T Consensus 348 L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 348 LTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 555554457889999999987765 34578888775443
No 210
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.83 E-value=3.9e-08 Score=102.33 Aligned_cols=131 Identities=17% Similarity=0.258 Sum_probs=81.5
Q ss_pred CCccccccccc-hHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHH
Q 005304 226 TGVTFDDVAGV-DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 301 (703)
Q Consensus 226 ~~~~f~dv~G~-de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~ 301 (703)
.+.+|++..-. +..+..+..+..+..+.. ....+++|+|+||||||+|+.++|.++ +.++++++..++.
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a~~~~~~~~-------~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKARQYVEEFD-------GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred cCCccccccCCCchHHHHHHHHHHHHHhhc-------cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence 34577776533 333333444444443221 012489999999999999999999987 7899999999988
Q ss_pred HHHhhh---hhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 302 EMFVGV---GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 302 ~~~~G~---~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
..+... .......+++... ..++|+|||++... ..++....+.+++..-- ...-.+|.+||.
T Consensus 140 ~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~---------~s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl 204 (244)
T PRK07952 140 SAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT---------ESRYEKVIINQIVDRRS----SSKRPTGMLTNS 204 (244)
T ss_pred HHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC---------CCHHHHHHHHHHHHHHH----hCCCCEEEeCCC
Confidence 754332 1112234555443 45799999998862 23445566777765421 122356667885
No 211
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.81 E-value=1.3e-07 Score=108.04 Aligned_cols=197 Identities=18% Similarity=0.285 Sum_probs=127.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----------CCCEEEeechhHHH----------HHhhhh------hhHHHHHHHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSISGSEFVE----------MFVGVG------ASRVRDLFKKA 319 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~----------~~pfi~is~se~~~----------~~~G~~------~~~ir~lF~~A 319 (703)
.+++.|-||||||..++.+-.++ ..+++.+++-.+.+ .+.|.. ...+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 58899999999999999997744 35677888755442 112221 11222333311
Q ss_pred -HhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccC--CCccce-e
Q 005304 320 -KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLR--PGRFDR-Q 395 (703)
Q Consensus 320 -~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlR--pgRfdr-~ 395 (703)
-+..||||+|||+|.|+.+ .+.++..|+..-. ..+.+++||+..|.-+....-|.. ..|++. .
T Consensus 504 k~~~~~~VvLiDElD~Lvtr-----------~QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTR-----------SQDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred CCCCCCEEEEeccHHHHhcc-----------cHHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 2345799999999999743 2456776665433 235678888888865433222210 115554 7
Q ss_pred eeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcH--HHHHHHHHHHHHHHHHhCC-------CCcCHHHHHH
Q 005304 396 VTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG--ADLANLLNEAAILAGRRGK-------AAISSKEIDD 466 (703)
Q Consensus 396 I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sg--adL~~lv~eAa~~A~r~~~-------~~It~~di~~ 466 (703)
+.|.+++..+..+|+..++.....-.+-..+.+|++-...|| +....+|++|...|..+.. ..|++.|+.+
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~ 650 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVME 650 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHH
Confidence 899999999999999999877632222224444554443444 3455789999999877655 5678888888
Q ss_pred HHHHHHcCc
Q 005304 467 SIDRIVAGM 475 (703)
Q Consensus 467 Al~~v~~g~ 475 (703)
|+..++...
T Consensus 651 Ai~em~~~~ 659 (767)
T KOG1514|consen 651 AINEMLASP 659 (767)
T ss_pred HHHHHhhhh
Confidence 887765443
No 212
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.80 E-value=6.4e-08 Score=109.14 Aligned_cols=208 Identities=23% Similarity=0.323 Sum_probs=123.5
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEeechhHHHHH-
Q 005304 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMF- 304 (703)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~se~~~~~- 304 (703)
.+.+++|.+....++.+.+..+.... ..++++|++||||+++|+++... .+.||+.++|..+.+..
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~~----------~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQ----------ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCCC----------cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 45678888888777776665544332 37999999999999999999665 46899999998764322
Q ss_pred ----hhhhhh-------HHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc--Ccc----CC
Q 005304 305 ----VGVGAS-------RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE----GN 367 (703)
Q Consensus 305 ----~G~~~~-------~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~~----~~ 367 (703)
.|.... .....|..| ...+|||||||.+. ...+..+..++..-. ... ..
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~~ 276 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMP-----------LVLQAKLLRILQEREFERIGGHQTIK 276 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceee
Confidence 121100 001123332 23589999999992 233333444443211 001 12
Q ss_pred CCeEEEEecCCcccccccccCCCccce-------eeeecCCChhhHHHHH----HHHhcC----C-----CCCccccHHH
Q 005304 368 TGIIVIAATNRADILDSALLRPGRFDR-------QVTVDVPDIRGRTEIL----KVHGSN----K-----KFDADVSLDV 427 (703)
Q Consensus 368 ~~ViVIaaTN~p~~LD~aLlRpgRfdr-------~I~i~~Pd~~eR~~IL----~~~l~~----~-----~l~~dvdl~~ 427 (703)
.++.+|++||..-. .+.+.|+|.. .+.+..|..++|.+-+ ..++.+ . .++++ .+..
T Consensus 277 ~~~rii~~t~~~l~---~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~ 352 (457)
T PRK11361 277 VDIRIIAATNRDLQ---AMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPM-AMSL 352 (457)
T ss_pred eceEEEEeCCCCHH---HHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-HHHH
Confidence 35889999986321 2223333332 5778899999886522 222211 1 12221 2445
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 005304 428 IAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (703)
Q Consensus 428 lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~A 467 (703)
+.....-.+.++|++++++|...+ ....|+.+|+...
T Consensus 353 L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~~ 389 (457)
T PRK11361 353 LTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQ 389 (457)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChHh
Confidence 555544457889999999887654 3456787777543
No 213
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.79 E-value=4.5e-09 Score=99.63 Aligned_cols=106 Identities=29% Similarity=0.500 Sum_probs=71.5
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCEEEeechhHHHHHhhhhhh
Q 005304 234 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVEMFVGVGAS 310 (703)
Q Consensus 234 ~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~---~pfi~is~se~~~~~~G~~~~ 310 (703)
+|.+.+.+++++.+..+.... .+|||+|++||||+++|+++....+ .||+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~----------~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSS----------SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSS----------S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhCCC----------CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 477888888888887765443 3799999999999999999987664 478888887533
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 311 ~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
.++++.+ .+.+|||+|||.+ +.+.+..+.+++...+ +.++.+|+++..
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~----~~~~RlI~ss~~ 109 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRL-----------SPEAQRRLLDLLKRQE----RSNVRLIASSSQ 109 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS------------HHHHHHHHHHHHHCT----TTTSEEEEEECC
T ss_pred --HHHHHHc---CCCEEEECChHHC-----------CHHHHHHHHHHHHhcC----CCCeEEEEEeCC
Confidence 3455554 4568999999999 3344445555554422 345566666653
No 214
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.9e-08 Score=109.21 Aligned_cols=98 Identities=31% Similarity=0.510 Sum_probs=68.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH-HHhhhhhh-HHHHHHHHH----HhcCCeEEEEcCcccccccC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVGVGAS-RVRDLFKKA----KENAPCIVFVDEIDAVGRQR 339 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~-~~~G~~~~-~ir~lF~~A----~~~aP~ILfIDEID~L~~~r 339 (703)
+|||.||+|+|||+||+.+|+-+++||...+|..+.. .|+|+..+ -+..++..| .+.+..|+||||+|.++.+.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 7999999999999999999999999999999998875 57877543 345555554 22345799999999997443
Q ss_pred CCCCCCCChHHHHHHHHHHhhhcC
Q 005304 340 GTGIGGGNDEREQTLNQLLTEMDG 363 (703)
Q Consensus 340 ~~~~~~~~~e~~~~l~~LL~~ld~ 363 (703)
..-...-+-..+.+...||..++|
T Consensus 308 ~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 308 ESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred ccccccccccchhHHHHHHHHhcc
Confidence 221111111223345556666655
No 215
>PRK06526 transposase; Provisional
Probab=98.78 E-value=2.9e-08 Score=103.98 Aligned_cols=100 Identities=25% Similarity=0.367 Sum_probs=65.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHHhhh-hhhHHHHHHHHHHhcCCeEEEEcCcccccccC
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~~G~-~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r 339 (703)
+.+++|+||||||||+||.+++.++ |..+.+++..++.+..... ........+... ..+.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~--- 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP--- 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC---
Confidence 3489999999999999999998765 7888888888887765321 111222333332 345799999998872
Q ss_pred CCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005304 340 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (703)
Q Consensus 340 ~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (703)
...+....+.+++..... + + .+|.+||.+
T Consensus 173 ------~~~~~~~~L~~li~~r~~---~-~-s~IitSn~~ 201 (254)
T PRK06526 173 ------FEPEAANLFFQLVSSRYE---R-A-SLIVTSNKP 201 (254)
T ss_pred ------CCHHHHHHHHHHHHHHHh---c-C-CEEEEcCCC
Confidence 233444556666654321 2 2 366677764
No 216
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=3.5e-08 Score=107.38 Aligned_cols=134 Identities=24% Similarity=0.312 Sum_probs=97.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCE-------------------------EEeechhHH--------------
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------------------------FSISGSEFV-------------- 301 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pf-------------------------i~is~se~~-------------- 301 (703)
.+.|+++||+||+|+||+++|+++|..+.+.- ..+......
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 37888999999999999999999998774421 111110000
Q ss_pred --HH------H-hhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCC
Q 005304 302 --EM------F-VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (703)
Q Consensus 302 --~~------~-~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~ 368 (703)
+. . ...+.+.+|++.+.+.. ...-|++||++|.+ .....|.||+.++ ++..
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m--------------~~~AaNaLLKtLE--EPp~ 161 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL--------------NVAAANALLKTLE--EPPP 161 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc--------------CHHHHHHHHHHhc--CCCc
Confidence 00 0 01233567777665532 22359999999998 2457889999999 4566
Q ss_pred CeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHH
Q 005304 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH 413 (703)
Q Consensus 369 ~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~ 413 (703)
++++|.+|++++.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 162 ~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 162 GTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 78999999999999999999 88 68999999999988888764
No 217
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.76 E-value=2.3e-08 Score=97.71 Aligned_cols=133 Identities=21% Similarity=0.324 Sum_probs=87.0
Q ss_pred cchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------------------
Q 005304 235 GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------------------- 291 (703)
Q Consensus 235 G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p----------------------- 291 (703)
|++++++.|.+.+.. .+.|..+||+||+|+||+++|+++|..+-..
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 677777777776643 2456689999999999999999999976321
Q ss_pred EEEeechhHHHHHhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCC
Q 005304 292 FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (703)
Q Consensus 292 fi~is~se~~~~~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~ 367 (703)
++.++..+.. ..-..+.++++.+.+.. ...-|++|||+|.+ .....|.||..|+.. .
T Consensus 70 ~~~~~~~~~~---~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l--------------~~~a~NaLLK~LEep--p 130 (162)
T PF13177_consen 70 FIIIKPDKKK---KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL--------------TEEAQNALLKTLEEP--P 130 (162)
T ss_dssp EEEEETTTSS---SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHHST--T
T ss_pred eEEEeccccc---chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh--------------hHHHHHHHHHHhcCC--C
Confidence 2222211100 01234567766666532 23569999999998 355788899988854 4
Q ss_pred CCeEEEEecCCcccccccccCCCccceeeeecC
Q 005304 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDV 400 (703)
Q Consensus 368 ~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~ 400 (703)
.++++|.+|+.++.+-|.+++ |.- .+.++.
T Consensus 131 ~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~ 160 (162)
T PF13177_consen 131 ENTYFILITNNPSKILPTIRS--RCQ-VIRFRP 160 (162)
T ss_dssp TTEEEEEEES-GGGS-HHHHT--TSE-EEEE--
T ss_pred CCEEEEEEECChHHChHHHHh--hce-EEecCC
Confidence 578889999999999999999 663 455543
No 218
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.75 E-value=2.4e-07 Score=96.74 Aligned_cols=131 Identities=20% Similarity=0.285 Sum_probs=91.0
Q ss_pred CeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC------------cccccccccCCCc
Q 005304 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR------------ADILDSALLRPGR 391 (703)
Q Consensus 324 P~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~------------p~~LD~aLlRpgR 391 (703)
|.||||||+|.| +-+.-..+|.-|.. .+ .-++|.+||+ |+.++-.|+. |
T Consensus 289 pGVLFIDEvHML-----------DIEcFsFlNrAlE~--d~----~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R 349 (454)
T KOG2680|consen 289 PGVLFIDEVHML-----------DIECFSFLNRALEN--DM----APIIIMATNRGITRIRGTNYRSPHGIPIDLLD--R 349 (454)
T ss_pred cceEEEeeehhh-----------hhHHHHHHHHHhhh--cc----CcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--h
Confidence 788888888887 33444455554431 12 2256666664 5566666666 5
Q ss_pred cceeeeecCCChhhHHHHHHHHhcCCCCCcccc-HHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 005304 392 FDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS-LDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (703)
Q Consensus 392 fdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~ 470 (703)
. ..|.-.+++.++.++||+.++......-+.+ ++.|......-|-+--.+|+..|.+.|.++....+..+|++++..-
T Consensus 350 ~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~L 428 (454)
T KOG2680|consen 350 M-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRL 428 (454)
T ss_pred h-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHH
Confidence 4 3667778899999999999987654432222 4455555555566777899999999999999999999999999876
Q ss_pred HHcC
Q 005304 471 IVAG 474 (703)
Q Consensus 471 v~~g 474 (703)
++..
T Consensus 429 FlD~ 432 (454)
T KOG2680|consen 429 FLDE 432 (454)
T ss_pred Hhhh
Confidence 6544
No 219
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.73 E-value=8.6e-08 Score=103.98 Aligned_cols=112 Identities=19% Similarity=0.284 Sum_probs=70.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHHhhh---hhhHHHHHHHHHHhcCCeEEEEcCccccccc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV---GASRVRDLFKKAKENAPCIVFVDEIDAVGRQ 338 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~~G~---~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~ 338 (703)
.+++|+||+|||||+||.|+|+++ |..+++++..++.+.+... ........++... ...+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC--
Confidence 589999999999999999999986 8899999999988765321 1111122233333 34699999997762
Q ss_pred CCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC-ccc----ccccccCCCccc
Q 005304 339 RGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADI----LDSALLRPGRFD 393 (703)
Q Consensus 339 r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~-p~~----LD~aLlRpgRfd 393 (703)
.+++....+..++...- .+. --+|.|||. ++. +++.+.+ |+-
T Consensus 260 -------~t~~~~~~Lf~iin~R~---~~~-k~tIiTSNl~~~el~~~~~eri~S--RL~ 306 (329)
T PRK06835 260 -------ITEFSKSELFNLINKRL---LRQ-KKMIISTNLSLEELLKTYSERISS--RLL 306 (329)
T ss_pred -------CCHHHHHHHHHHHHHHH---HCC-CCEEEECCCCHHHHHHHHhHHHHH--HHH
Confidence 23444455555554422 111 235566774 333 4556665 553
No 220
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.72 E-value=1.2e-07 Score=100.07 Aligned_cols=198 Identities=21% Similarity=0.199 Sum_probs=125.8
Q ss_pred cccccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeec
Q 005304 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (703)
Q Consensus 218 ~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (703)
..-+.+++++-+++|+++.++....+.+..+.-+.| +.|+|||||||||+...+.|..+..|.-+-
T Consensus 28 ~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lP------------h~L~YgPPGtGktsti~a~a~~ly~~~~~~-- 93 (360)
T KOG0990|consen 28 PQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLP------------HLLFYGPPGTGKTSTILANARDFYSPHPTT-- 93 (360)
T ss_pred CCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCC------------cccccCCCCCCCCCchhhhhhhhcCCCCch--
Confidence 344678889999999999999988887774333322 799999999999999999999987761111
Q ss_pred hhHHHHH----hhhhhhH-HHHHHHHHHh-------cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc
Q 005304 298 SEFVEMF----VGVGASR-VRDLFKKAKE-------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE 365 (703)
Q Consensus 298 se~~~~~----~G~~~~~-ir~lF~~A~~-------~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~ 365 (703)
+-+.+.. .|-..-+ --..|..++. ..+..+++||.|+.. ....|+|-..++.+.
T Consensus 94 ~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT--------------~~AQnALRRviek~t 159 (360)
T KOG0990|consen 94 SMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT--------------RDAQNALRRVIEKYT 159 (360)
T ss_pred hHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhh--------------HHHHHHHHHHHHHhc
Confidence 1111111 1111111 1234555542 256789999999983 335566666666665
Q ss_pred CCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCcccc-HHHHHHhCCCCcHHHHHHHH
Q 005304 366 GNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS-LDVIAMRTPGFSGADLANLL 444 (703)
Q Consensus 366 ~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~lA~~t~G~sgadL~~lv 444 (703)
.+. .|+..+|.+..+.|++++ ||.+ +.+.+.+...-...+.++..........+ ...+++ .+-.|++..+
T Consensus 160 ~n~--rF~ii~n~~~ki~pa~qs--Rctr-frf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r----~s~gDmr~a~ 230 (360)
T KOG0990|consen 160 ANT--RFATISNPPQKIHPAQQS--RCTR-FRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGR----LSVGDMRVAL 230 (360)
T ss_pred cce--EEEEeccChhhcCchhhc--cccc-CCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHH----HhHHHHHHHH
Confidence 554 445567999999999998 7763 45666666666777777765544332211 222333 2445666666
Q ss_pred HHHHHHHH
Q 005304 445 NEAAILAG 452 (703)
Q Consensus 445 ~eAa~~A~ 452 (703)
|.....+.
T Consensus 231 n~Lqs~~~ 238 (360)
T KOG0990|consen 231 NYLQSILK 238 (360)
T ss_pred HHHHHHHH
Confidence 65444443
No 221
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.71 E-value=8.2e-09 Score=96.36 Aligned_cols=111 Identities=32% Similarity=0.392 Sum_probs=58.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeech-hHH-HHHhhhhhhHHH-HHHHHHHh-cCCeEEEEcCcccccccCCC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS-EFV-EMFVGVGASRVR-DLFKKAKE-NAPCIVFVDEIDAVGRQRGT 341 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s-e~~-~~~~G~~~~~ir-~lF~~A~~-~aP~ILfIDEID~L~~~r~~ 341 (703)
+|||+|+||+|||++|+++|+..+..|..+.+. ++. ....|...-... ..|+-.+. --..|+++|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra------ 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA------ 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC------
Confidence 489999999999999999999999999999874 332 222232100000 00000000 00149999999886
Q ss_pred CCCCCChHHHHHHHHHHhhhcCc---------cCCCCeEEEEecCCcc-----cccccccCCCcc
Q 005304 342 GIGGGNDEREQTLNQLLTEMDGF---------EGNTGIIVIAATNRAD-----ILDSALLRPGRF 392 (703)
Q Consensus 342 ~~~~~~~e~~~~l~~LL~~ld~~---------~~~~~ViVIaaTN~p~-----~LD~aLlRpgRf 392 (703)
..++...||+.|..- .-...+.||||-|..+ .|+++++. ||
T Consensus 75 --------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 --------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ---------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred --------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 234566666666432 2234689999999866 67888887 77
No 222
>PRK15115 response regulator GlrR; Provisional
Probab=98.70 E-value=8.6e-08 Score=107.83 Aligned_cols=206 Identities=24% Similarity=0.377 Sum_probs=120.8
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHHh---
Q 005304 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV--- 305 (703)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~~--- 305 (703)
.++|.+.....+.+.+..+... ...++|+|++|||||++|+++.... +.||+.++|..+.+...
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~----------~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~ 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQS----------DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESE 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhccC----------CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHH
Confidence 4677776666555555443322 2269999999999999999997654 58999999987643221
Q ss_pred --hhhh-------hHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc--Ccc----CCCCe
Q 005304 306 --GVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE----GNTGI 370 (703)
Q Consensus 306 --G~~~-------~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~~----~~~~V 370 (703)
|... .....+|+.+ ...+|||||||.+ +...+..+..++..-. ... ...++
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~ 270 (444)
T PRK15115 205 LFGHARGAFTGAVSNREGLFQAA---EGGTLFLDEIGDM-----------PAPLQVKLLRVLQERKVRPLGSNRDIDIDV 270 (444)
T ss_pred hcCCCcCCCCCCccCCCCcEEEC---CCCEEEEEccccC-----------CHHHHHHHHHHHhhCCEEeCCCCceeeeeE
Confidence 1100 0001122222 2468999999999 2333444444443211 111 12268
Q ss_pred EEEEecCCcccccccccCCCccc-----e--eeeecCCChhhHHH----HHHHHhcC----C-----CCCccccHHHHHH
Q 005304 371 IVIAATNRADILDSALLRPGRFD-----R--QVTVDVPDIRGRTE----ILKVHGSN----K-----KFDADVSLDVIAM 430 (703)
Q Consensus 371 iVIaaTN~p~~LD~aLlRpgRfd-----r--~I~i~~Pd~~eR~~----IL~~~l~~----~-----~l~~dvdl~~lA~ 430 (703)
.+|++|+.. ++..+ ..|+|. + .+.+.+|..++|.+ +++.++.. . .++++ -+..|..
T Consensus 271 rii~~~~~~--l~~~~-~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~L~~ 346 (444)
T PRK15115 271 RIISATHRD--LPKAM-ARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTD-AMKRLMT 346 (444)
T ss_pred EEEEeCCCC--HHHHH-HcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHH-HHHHHHh
Confidence 999999853 33322 224442 1 56788899999865 22333221 1 12222 2556666
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 431 RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 431 ~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
...-.+.++|+++++.|...+ ....|+.+++...+
T Consensus 347 ~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 381 (444)
T PRK15115 347 ASWPGNVRQLVNVIEQCVALT---SSPVISDALVEQAL 381 (444)
T ss_pred CCCCChHHHHHHHHHHHHHhC---CCCccChhhhhhhh
Confidence 664457899999999987654 34568877775443
No 223
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.69 E-value=1.5e-07 Score=101.14 Aligned_cols=101 Identities=25% Similarity=0.304 Sum_probs=66.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHHhhh-hhhHHHHHHHHHHhcCCeEEEEcCccccccc
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQ 338 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~~G~-~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~ 338 (703)
..+|++|+||+|||||+||.|+|+++ |.++.+++..+|...+... ......+.++..+ ...+|+||||..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~-- 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ-- 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc--
Confidence 35699999999999999999999987 8899999999887654322 1112344455443 34699999997641
Q ss_pred CCCCCCCCChHHH-HHHHHHHhh-hcCccCCCCeEEEEecCCc
Q 005304 339 RGTGIGGGNDERE-QTLNQLLTE-MDGFEGNTGIIVIAATNRA 379 (703)
Q Consensus 339 r~~~~~~~~~e~~-~~l~~LL~~-ld~~~~~~~ViVIaaTN~p 379 (703)
..++.. .++..++.. +. .+...|.|||.+
T Consensus 231 -------~s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 231 -------MSSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred -------ccHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 123332 344555432 22 234577788863
No 224
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.68 E-value=1.3e-07 Score=106.99 Aligned_cols=208 Identities=19% Similarity=0.302 Sum_probs=122.2
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHH--
Q 005304 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF-- 304 (703)
Q Consensus 230 f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~-- 304 (703)
+.+++|.+....++.+.+..+... +.++++.|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~----------~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRS----------DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCc----------CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 356888888888877766654433 2379999999999999999997653 6799999998764322
Q ss_pred ---hhhhhh-------HHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcC--c----cCCC
Q 005304 305 ---VGVGAS-------RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--F----EGNT 368 (703)
Q Consensus 305 ---~G~~~~-------~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~--~----~~~~ 368 (703)
.|.... .....|+. ...++|||||||.+ +.+.+..+..++..-.. . ....
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~ei~~l-----------~~~~q~~ll~~l~~~~~~~~~~~~~~~~ 268 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQ---ADGGTLFLDEIGDM-----------PLDAQTRLLRVLADGEFYRVGGRTPIKV 268 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEE---CCCCeEEEEchhhC-----------CHHHHHHHHHHHhcCcEEECCCCceeee
Confidence 121000 00111222 23578999999999 23344444444442110 0 1123
Q ss_pred CeEEEEecCCcc-------cccccccCCCccceeeeecCCChhhHHH----HHHHHhc----CC-----CCCccccHHHH
Q 005304 369 GIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHGS----NK-----KFDADVSLDVI 428 (703)
Q Consensus 369 ~ViVIaaTN~p~-------~LD~aLlRpgRfdr~I~i~~Pd~~eR~~----IL~~~l~----~~-----~l~~dvdl~~l 428 (703)
++.+|++|+..- .+.+.|.. |+. .+.+.+|..++|.+ +++.++. .. .++++ .+..|
T Consensus 269 ~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~L 344 (463)
T TIGR01818 269 DVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPE-ALERL 344 (463)
T ss_pred eeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHH-HHHHH
Confidence 578888887531 11222222 222 46778888777754 3333221 11 12221 24444
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 429 AMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 429 A~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
.....--+.++|+++++.|+..+ ....|+.+|+...+
T Consensus 345 ~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 345 KQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 44433346789999999988765 23578888876554
No 225
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.67 E-value=9.5e-08 Score=101.77 Aligned_cols=211 Identities=23% Similarity=0.335 Sum_probs=134.0
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHH---hcCCCEEEeechhHHH
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGSEFVE 302 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~---e~~~pfi~is~se~~~ 302 (703)
....|+.+++.+...+.+.+-...+..-+ .++||.|..||||-++||+.-. ....||+.+||..+.+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~AmlD----------APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKLAMLD----------APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHhhccC----------CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 44578999998887776665554433222 2699999999999999999733 3378999999987764
Q ss_pred H-----Hhhhh--hhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCc--------cCC
Q 005304 303 M-----FVGVG--ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--------EGN 367 (703)
Q Consensus 303 ~-----~~G~~--~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~--------~~~ 367 (703)
. ..|.. .+.-..+|+.|... .+|+|||..+ +...+..+..||+ ||. +-.
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEm-----------Sp~lQaKLLRFL~--DGtFRRVGee~Ev~ 332 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEM-----------SPRLQAKLLRFLN--DGTFRRVGEDHEVH 332 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhc-----------CHHHHHHHHHHhc--CCceeecCCcceEE
Confidence 3 23332 24456788888655 6889999887 3345555555554 221 112
Q ss_pred CCeEEEEecCCc--ccccccccCCCccce--eeeecCCChhhHHH--------HHHHHhcCCCCC-cccc---HHHHHHh
Q 005304 368 TGIIVIAATNRA--DILDSALLRPGRFDR--QVTVDVPDIRGRTE--------ILKVHGSNKKFD-ADVS---LDVIAMR 431 (703)
Q Consensus 368 ~~ViVIaaTN~p--~~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~--------IL~~~l~~~~l~-~dvd---l~~lA~~ 431 (703)
-+|.||+||..+ +..+..-.|...|.| +..+..|..++|.. ++..+..+.... +..+ +..+.+.
T Consensus 333 vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y 412 (511)
T COG3283 333 VDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRY 412 (511)
T ss_pred EEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHc
Confidence 269999999653 455555555555665 77888999888855 223333333222 2222 3344444
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Q 005304 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (703)
Q Consensus 432 t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~ 465 (703)
..--+.++|.|.+.+|+.... ...++.+||.
T Consensus 413 ~WpGNVRqL~N~iyRA~s~~E---g~~l~i~~i~ 443 (511)
T COG3283 413 AWPGNVRQLKNAIYRALTLLE---GYELRIEDIL 443 (511)
T ss_pred CCCccHHHHHHHHHHHHHHhc---cCccchhhcc
Confidence 333467889998888876652 2345555543
No 226
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.67 E-value=2.2e-07 Score=93.82 Aligned_cols=183 Identities=22% Similarity=0.281 Sum_probs=95.9
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCC---CEEEeec-hhH----HHHH-
Q 005304 234 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV---PFFSISG-SEF----VEMF- 304 (703)
Q Consensus 234 ~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~---pfi~is~-se~----~~~~- 304 (703)
+|.++..+.|.+.+..- ....++|+||+|+|||+|++.+.....- ..+++++ ... ...+
T Consensus 2 ~gR~~el~~l~~~l~~~------------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLESG------------PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh------------cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 56666666666555321 1237999999999999999999998732 2222221 100 0000
Q ss_pred ------------h-----------------hhhhhHHHHHHHHHHhc-CCeEEEEcCccccc-ccCCCCCCCCChHHHHH
Q 005304 305 ------------V-----------------GVGASRVRDLFKKAKEN-APCIVFVDEIDAVG-RQRGTGIGGGNDEREQT 353 (703)
Q Consensus 305 ------------~-----------------G~~~~~ir~lF~~A~~~-aP~ILfIDEID~L~-~~r~~~~~~~~~e~~~~ 353 (703)
. ......+..+++...+. ...||+|||++.+. .. .+....
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~---------~~~~~~ 140 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIAS---------EEDKDF 140 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCT---------TTTHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcc---------cchHHH
Confidence 0 11234456666666543 34899999999995 11 122344
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCCcccc------cccccCCCccceeeeecCCChhhHHHHHHHHhcCCC-C-CccccH
Q 005304 354 LNQLLTEMDGFEGNTGIIVIAATNRADIL------DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK-F-DADVSL 425 (703)
Q Consensus 354 l~~LL~~ld~~~~~~~ViVIaaTN~p~~L------D~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~-l-~~dvdl 425 (703)
+..|...++......++.+|.++...... ...+.. |+.. +.+++-+.++..++++..+.... + .++.++
T Consensus 141 ~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T PF01637_consen 141 LKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------HHHH
T ss_pred HHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 45555555543344455444444332211 122333 6766 99999999999999998776651 1 245567
Q ss_pred HHHHHhCCCCcHHHHH
Q 005304 426 DVIAMRTPGFSGADLA 441 (703)
Q Consensus 426 ~~lA~~t~G~sgadL~ 441 (703)
+.+...+.|. |+-|.
T Consensus 218 ~~i~~~~gG~-P~~l~ 232 (234)
T PF01637_consen 218 EEIYSLTGGN-PRYLQ 232 (234)
T ss_dssp HHHHHHHTT--HHHHH
T ss_pred HHHHHHhCCC-HHHHh
Confidence 7888888764 55554
No 227
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=2.7e-07 Score=99.84 Aligned_cols=134 Identities=16% Similarity=0.223 Sum_probs=95.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCE--EEeech------hHH----------HHHh--hhhhhHHHHHHHHHHh
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF--FSISGS------EFV----------EMFV--GVGASRVRDLFKKAKE 321 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~pf--i~is~s------e~~----------~~~~--G~~~~~ir~lF~~A~~ 321 (703)
+.|.++||+||+|+||+++|+++|..+-+.- -.-.|. .+. .... ..+.+.+|++.+.+..
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 5677999999999999999999998763311 000111 000 0000 1245567777666543
Q ss_pred ----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeee
Q 005304 322 ----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVT 397 (703)
Q Consensus 322 ----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~ 397 (703)
...-|++||++|.+ .....|.||+.++. +..++++|.+|+.++.|-|.+++ |. ..+.
T Consensus 102 ~~~~g~~KV~iI~~a~~m--------------~~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~~ 162 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERL--------------TEAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QTWL 162 (325)
T ss_pred ccccCCceEEEEechhhh--------------CHHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eEEe
Confidence 22359999999998 24577899999985 55678888899999999999998 77 4788
Q ss_pred ecCCChhhHHHHHHHHh
Q 005304 398 VDVPDIRGRTEILKVHG 414 (703)
Q Consensus 398 i~~Pd~~eR~~IL~~~l 414 (703)
|++|+.++..+.|....
T Consensus 163 ~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 163 IHPPEEQQALDWLQAQS 179 (325)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999988888777653
No 228
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=4.9e-07 Score=97.67 Aligned_cols=153 Identities=20% Similarity=0.318 Sum_probs=101.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCE----EEeechhHHH------H-Hh-------h------hhhhHHHHHH
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF----FSISGSEFVE------M-FV-------G------VGASRVRDLF 316 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pf----i~is~se~~~------~-~~-------G------~~~~~ir~lF 316 (703)
.+.|..+||+||+|+||+++|.++|..+-+.- -...|..+.. - ++ | .+.+.+|++.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 35677899999999999999999998663310 0011111110 0 00 1 2345677776
Q ss_pred HHHHhcC----CeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCcc
Q 005304 317 KKAKENA----PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRF 392 (703)
Q Consensus 317 ~~A~~~a----P~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRf 392 (703)
+.+...+ --|++||++|.+ .....|.||+.|+.. ..++++|.+|+.++.|-|.+++ |+
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m--------------~~~AaNaLLKtLEEP--p~~~~fiL~~~~~~~lLpTIrS--RC 164 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAI--------------NRAACNALLKTLEEP--SPGRYLWLISAQPARLPATIRS--RC 164 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhh--------------CHHHHHHHHHHhhCC--CCCCeEEEEECChhhCchHHHh--hh
Confidence 6654322 359999999999 245778899988853 4567788888999999999999 87
Q ss_pred ceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcH
Q 005304 393 DRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 437 (703)
Q Consensus 393 dr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sg 437 (703)
..+.|+.|+.++-.+.|... ..+ ..+...++..+.|..+
T Consensus 165 -q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 165 -QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPG 203 (319)
T ss_pred -eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHH
Confidence 47889999988877777642 222 2223355666665433
No 229
>PRK09183 transposase/IS protein; Provisional
Probab=98.63 E-value=2.3e-07 Score=97.54 Aligned_cols=70 Identities=27% Similarity=0.475 Sum_probs=51.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh---cCCCEEEeechhHHHHHhhh-hhhHHHHHHHHHHhcCCeEEEEcCcccc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAV 335 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~se~~~~~~G~-~~~~ir~lF~~A~~~aP~ILfIDEID~L 335 (703)
.+++|+||||||||+||.+++.+ .|..+.++++.++...+... ....+...|... ...+++++|||++..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 47999999999999999999765 47888899988887554221 112344455543 245679999999876
No 230
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=7.2e-07 Score=98.29 Aligned_cols=205 Identities=21% Similarity=0.233 Sum_probs=132.3
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc----C-CCEEEeechhHHH--
Q 005304 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----G-VPFFSISGSEFVE-- 302 (703)
Q Consensus 230 f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~----~-~pfi~is~se~~~-- 302 (703)
-..+.|.+..+..+++++..... ..-+.++.+.|-||||||.+..-+-... . ...++++|..+.+
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle--------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLE--------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhh--------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 45688888888888887754322 2335689999999999999888664332 2 2458888875322
Q ss_pred --------HH----hhhhh-hHHHHHHHHH-Hhc-CCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCC
Q 005304 303 --------MF----VGVGA-SRVRDLFKKA-KEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (703)
Q Consensus 303 --------~~----~G~~~-~~ir~lF~~A-~~~-aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~ 367 (703)
.+ .+.+. ......|+.- .+. .+-++++||+|.|+.+. +.++..+. ++... .+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----------~~vLy~lF-ewp~l-p~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----------QTVLYTLF-EWPKL-PN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----------cceeeeeh-hcccC-Cc
Confidence 11 11111 2223344433 222 37799999999997332 12333332 23322 35
Q ss_pred CCeEEEEecCCcccccccccC----CCccceeeeecCCChhhHHHHHHHHhcCCCCCccc--cHHHHHHhCCCCcHHHHH
Q 005304 368 TGIIVIAATNRADILDSALLR----PGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV--SLDVIAMRTPGFSGADLA 441 (703)
Q Consensus 368 ~~ViVIaaTN~p~~LD~aLlR----pgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dv--dl~~lA~~t~G~sgadL~ 441 (703)
..+++|+.+|..+.-|..|-| .+.--..+.|++++.++..+||+..+......... .++..|++..|.|| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 678999999988766655433 12223478999999999999999999887655443 36778888888877 454
Q ss_pred ---HHHHHHHHHHHHhCC
Q 005304 442 ---NLLNEAAILAGRRGK 456 (703)
Q Consensus 442 ---~lv~eAa~~A~r~~~ 456 (703)
.+|+.|..+|....+
T Consensus 367 kaLdv~R~aiEI~E~e~r 384 (529)
T KOG2227|consen 367 KALDVCRRAIEIAEIEKR 384 (529)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456777777755543
No 231
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.62 E-value=1.7e-07 Score=108.53 Aligned_cols=189 Identities=15% Similarity=0.149 Sum_probs=128.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCEEEeechhHHHHHhhhhh---------h-HHHHHHHHHHhcCCeEEEEcCc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEMFVGVGA---------S-RVRDLFKKAKENAPCIVFVDEI 332 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~se~~~~~~G~~~---------~-~ir~lF~~A~~~aP~ILfIDEI 332 (703)
.||+|.|++||+||+++++++.-+. .||+.+..+--.+..+|... . .-..++..|. ..||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 4899999999999999999999874 58888876655555555431 0 0112233221 259999999
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHHhhhcCc-----------cCCCCeEEEEecCCc---ccccccccCCCccceeeee
Q 005304 333 DAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF-----------EGNTGIIVIAATNRA---DILDSALLRPGRFDRQVTV 398 (703)
Q Consensus 333 D~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~-----------~~~~~ViVIaaTN~p---~~LD~aLlRpgRfdr~I~i 398 (703)
..+ ...++..|++-|+.- .-...+++|++-|.. +.|.++++. ||+.++.+
T Consensus 103 n~~--------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 103 ERL--------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred ccC--------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 888 245777777777532 112468888874432 458899999 99999999
Q ss_pred cCCChhhH-------HHHHH--HHhcCCCCCccccHHHHHHh--CCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHH
Q 005304 399 DVPDIRGR-------TEILK--VHGSNKKFDADVSLDVIAMR--TPGF-SGADLANLLNEAAILAGRRGKAAISSKEIDD 466 (703)
Q Consensus 399 ~~Pd~~eR-------~~IL~--~~l~~~~l~~dvdl~~lA~~--t~G~-sgadL~~lv~eAa~~A~r~~~~~It~~di~~ 466 (703)
+.|+..+. .+|.. ..+.+..++.. .+..++.. ..|. |.+--..+++-|..+|.-+|+..|+.+|+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~-~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~ 245 (584)
T PRK13406 167 DGLALRDAREIPIDADDIAAARARLPAVGPPPE-AIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLAL 245 (584)
T ss_pred CCCChHHhcccCCCHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 98875532 22332 22333333322 13333221 2355 6777778999999999999999999999999
Q ss_pred HHHHHHc
Q 005304 467 SIDRIVA 473 (703)
Q Consensus 467 Al~~v~~ 473 (703)
|+.-++.
T Consensus 246 Aa~lvL~ 252 (584)
T PRK13406 246 AARLVLA 252 (584)
T ss_pred HHHHHHH
Confidence 9987764
No 232
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=3.1e-07 Score=99.99 Aligned_cols=152 Identities=16% Similarity=0.114 Sum_probs=102.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCC--EEEeech------hHHH----------HH---hhhhhhHHHHHHHHH
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--FFSISGS------EFVE----------MF---VGVGASRVRDLFKKA 319 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p--fi~is~s------e~~~----------~~---~G~~~~~ir~lF~~A 319 (703)
.+.|..+||+||+|+||+++|+++|..+-+. --.-.|. .+.. .- ...+.+.+|++.+.+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 4677899999999999999999999876321 0000111 1100 00 012345677776665
Q ss_pred Hh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCcccee
Q 005304 320 KE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQ 395 (703)
Q Consensus 320 ~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~ 395 (703)
.. ...-|++||++|.+ ..+..|.||+.|+. +..+.++|..|+.++.|-|.+++ |.. .
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m--------------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~ 161 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALL--------------TDAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-L 161 (334)
T ss_pred hhccccCCceEEEEcchHhh--------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-c
Confidence 43 33469999999999 34578999999985 45678899999999999999999 775 6
Q ss_pred eeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCC
Q 005304 396 VTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGF 435 (703)
Q Consensus 396 I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~ 435 (703)
+.+++|+.++..+.|.... ..+. .....+++.+.|-
T Consensus 162 ~~~~~~~~~~~~~~L~~~~---~~~~-~~a~~~~~la~G~ 197 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREV---TMSQ-DALLAALRLSAGA 197 (334)
T ss_pred ccCCCCCHHHHHHHHHHcc---CCCH-HHHHHHHHHcCCC
Confidence 7999999888777775431 2222 2244555666653
No 233
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.61 E-value=3.4e-07 Score=96.00 Aligned_cols=70 Identities=26% Similarity=0.474 Sum_probs=50.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHHhhhhhh-HHHHHHHH-HHhcCCeEEEEcCcccc
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVGAS-RVRDLFKK-AKENAPCIVFVDEIDAV 335 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~~G~~~~-~ir~lF~~-A~~~aP~ILfIDEID~L 335 (703)
+.+++|+||||||||+||-|+++++ |.++.+++..+++...-..-.. .....+.. . ....+|+|||+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 4489999999999999999998876 8999999999998754332211 11221222 2 23469999999776
No 234
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.61 E-value=1.2e-06 Score=90.90 Aligned_cols=184 Identities=17% Similarity=0.219 Sum_probs=122.0
Q ss_pred cccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEE---
Q 005304 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFF--- 293 (703)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi--- 293 (703)
+|.++..+-+++.+.+.++....+..+...-.-| ++++|||+|+||.|.+.++-+++ |++=.
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~P------------Hll~yGPSGaGKKTrimclL~elYG~gveklki~ 69 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFP------------HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIE 69 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCCC------------eEEEECCCCCCchhhHHHHHHHHhCCCchheeee
Confidence 4667778889999999999888877766421122 59999999999999999998876 22111
Q ss_pred ---------------EeechhHHH---HHhhhhh-hHHHHHHHHHHhcCC---------eEEEEcCcccccccCCCCCCC
Q 005304 294 ---------------SISGSEFVE---MFVGVGA-SRVRDLFKKAKENAP---------CIVFVDEIDAVGRQRGTGIGG 345 (703)
Q Consensus 294 ---------------~is~se~~~---~~~G~~~-~~ir~lF~~A~~~aP---------~ILfIDEID~L~~~r~~~~~~ 345 (703)
+++.....+ .-.|... --+.+++++..+..| .+++|.|.|.|.
T Consensus 70 ~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT--------- 140 (351)
T KOG2035|consen 70 TRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT--------- 140 (351)
T ss_pred eEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh---------
Confidence 111111111 0012211 224556665544332 588899999993
Q ss_pred CChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCcc-cc
Q 005304 346 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VS 424 (703)
Q Consensus 346 ~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vd 424 (703)
......|-..|+.+.+ ++.+|..+|....+-+++++ |. ..|.++.|+.++...++...+.+..+... .-
T Consensus 141 -----~dAQ~aLRRTMEkYs~--~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~ 210 (351)
T KOG2035|consen 141 -----RDAQHALRRTMEKYSS--NCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKEL 210 (351)
T ss_pred -----HHHHHHHHHHHHHHhc--CceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHH
Confidence 2233445555665544 46777778988889899988 55 36899999999999999988877665533 23
Q ss_pred HHHHHHhCCC
Q 005304 425 LDVIAMRTPG 434 (703)
Q Consensus 425 l~~lA~~t~G 434 (703)
+..+|..+.|
T Consensus 211 l~rIa~kS~~ 220 (351)
T KOG2035|consen 211 LKRIAEKSNR 220 (351)
T ss_pred HHHHHHHhcc
Confidence 6677777664
No 235
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.61 E-value=4.7e-07 Score=103.63 Aligned_cols=212 Identities=19% Similarity=0.230 Sum_probs=122.3
Q ss_pred ccccccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEee
Q 005304 217 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (703)
Q Consensus 217 ~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (703)
....|.++..+.+.+||+-...-.++++..++.... +....+-+||+||||||||++++.+|++++..+.+..
T Consensus 5 ~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~-------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 5 ESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS-------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred ccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc-------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 446788999999999999998777777777664221 1223346888999999999999999999988777653
Q ss_pred c-hhHH------HHHhhhh------hh---HHHHH-HHHHHh-----------cCCeEEEEcCcccccccCCCCCCCCCh
Q 005304 297 G-SEFV------EMFVGVG------AS---RVRDL-FKKAKE-----------NAPCIVFVDEIDAVGRQRGTGIGGGND 348 (703)
Q Consensus 297 ~-se~~------~~~~G~~------~~---~ir~l-F~~A~~-----------~aP~ILfIDEID~L~~~r~~~~~~~~~ 348 (703)
. ..+. ..+.+.. .. ...++ +..++. ..+.||+|||+-.+... ...
T Consensus 78 np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~-------~~~ 150 (519)
T PF03215_consen 78 NPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR-------DTS 150 (519)
T ss_pred CCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch-------hHH
Confidence 2 2210 1111110 01 11111 111111 24679999999876421 112
Q ss_pred HHHHHHHHHHhhhcCccCCC-CeEEEEe-cC------Cc--------ccccccccCCCccceeeeecCCChhhHHHHHHH
Q 005304 349 EREQTLNQLLTEMDGFEGNT-GIIVIAA-TN------RA--------DILDSALLRPGRFDRQVTVDVPDIRGRTEILKV 412 (703)
Q Consensus 349 e~~~~l~~LL~~ld~~~~~~-~ViVIaa-TN------~p--------~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~ 412 (703)
.....+.+++.. ... .+|+|.+ ++ .. ..+++.++...++ .+|.|.+-...-.++.|+.
T Consensus 151 ~f~~~L~~~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~r 224 (519)
T PF03215_consen 151 RFREALRQYLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKR 224 (519)
T ss_pred HHHHHHHHHHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHH
Confidence 333444444431 222 5666666 11 11 1345555543334 3788887777655555544
Q ss_pred HhcCC--------CCCcccc-HHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 005304 413 HGSNK--------KFDADVS-LDVIAMRTPGFSGADLANLLNEAAILAG 452 (703)
Q Consensus 413 ~l~~~--------~l~~dvd-l~~lA~~t~G~sgadL~~lv~eAa~~A~ 452 (703)
.+... ......+ ++.|+..+ .+||+.+++.-...+.
T Consensus 225 I~~~E~~~~~~~~~~p~~~~~l~~I~~~s----~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 225 ILKKEARSSSGKNKVPDKQSVLDSIAESS----NGDIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHhhhhcCCccCCChHHHHHHHHHhc----CchHHHHHHHHHHHhc
Confidence 43221 1122222 56776654 4599999988888776
No 236
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.59 E-value=2e-07 Score=104.54 Aligned_cols=205 Identities=23% Similarity=0.339 Sum_probs=118.2
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEeechhHHHHHh---
Q 005304 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMFV--- 305 (703)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~se~~~~~~--- 305 (703)
.++|.+.....+.+.+..+... ...++++|++||||+++|+++... .+.||+.++|+.+.+...
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~----------~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPS----------EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCC----------CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 4677777777666555544322 247999999999999999999654 468999999986643221
Q ss_pred --hhhhhH-------HHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc--Ccc----CCCCe
Q 005304 306 --GVGASR-------VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE----GNTGI 370 (703)
Q Consensus 306 --G~~~~~-------ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~~----~~~~V 370 (703)
|..... ...+|.. ..+++|||||||.+. ...+..+..++..-. ... ...++
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ldei~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ 275 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDIS-----------PMMQVRLLRAIQEREVQRVGSNQTISVDV 275 (441)
T ss_pred hcCCCCCCcCCCCcCCCCceeE---CCCCEEEEeccccCC-----------HHHHHHHHHHHccCcEEeCCCCceeeece
Confidence 110000 0111222 235799999999992 233333333333211 000 12257
Q ss_pred EEEEecCCcccccccccCCCccce-------eeeecCCChhhHHH----HHHHHhcC----C-----CCCccccHHHHHH
Q 005304 371 IVIAATNRADILDSALLRPGRFDR-------QVTVDVPDIRGRTE----ILKVHGSN----K-----KFDADVSLDVIAM 430 (703)
Q Consensus 371 iVIaaTN~p~~LD~aLlRpgRfdr-------~I~i~~Pd~~eR~~----IL~~~l~~----~-----~l~~dvdl~~lA~ 430 (703)
.+|++|+.+- .....+|+|.+ .+.+..|..++|.+ +++.++.+ . .+++ ..+..|..
T Consensus 276 rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~-~a~~~L~~ 351 (441)
T PRK10365 276 RLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTP-QAMDLLIH 351 (441)
T ss_pred EEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCH-HHHHHHHh
Confidence 7888887632 12223344432 57888899888865 23333221 1 1222 22455555
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 005304 431 RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (703)
Q Consensus 431 ~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~A 467 (703)
...--+.++|.++++.|...+ ....|+.+++...
T Consensus 352 ~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~~ 385 (441)
T PRK10365 352 YDWPGNIRELENAVERAVVLL---TGEYISERELPLA 385 (441)
T ss_pred CCCCCHHHHHHHHHHHHHHhC---CCCccchHhCchh
Confidence 553346788888888877653 3456777776543
No 237
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.58 E-value=7.3e-08 Score=109.64 Aligned_cols=204 Identities=27% Similarity=0.422 Sum_probs=122.0
Q ss_pred cchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHH--HhcCCCEEEeechhHHHH-----Hhhh
Q 005304 235 GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIA--GEAGVPFFSISGSEFVEM-----FVGV 307 (703)
Q Consensus 235 G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA--~e~~~pfi~is~se~~~~-----~~G~ 307 (703)
+.+...+.+...++.+..... .+|+.|.|||||-.+||++- .+..-||+.++|..+.+. ++|.
T Consensus 317 ~~d~s~a~l~rk~~rv~~~~~----------pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy 386 (606)
T COG3284 317 LLDPSRATLLRKAERVAATDL----------PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGY 386 (606)
T ss_pred ccCHHHHHHHHHHHHHhhcCC----------CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhcc
Confidence 555555555555544433322 69999999999999999993 346789999999876543 3332
Q ss_pred hh--------hHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhh-----hcCccCCCCeEEEE
Q 005304 308 GA--------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE-----MDGFEGNTGIIVIA 374 (703)
Q Consensus 308 ~~--------~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~-----ld~~~~~~~ViVIa 374 (703)
.. +-.+..+++|-. ..+|+|||..+ .-..+.-+.+.|.+ +.+-...-+|.||+
T Consensus 387 ~~GafTga~~kG~~g~~~~A~g---GtlFldeIgd~-----------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ 452 (606)
T COG3284 387 VAGAFTGARRKGYKGKLEQADG---GTLFLDEIGDM-----------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIA 452 (606)
T ss_pred CccccccchhccccccceecCC---CccHHHHhhhc-----------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEe
Confidence 22 222333444433 48999999887 22334444444443 22222334689999
Q ss_pred ecCCcccccccccCCCccce-------eeeecCCChhhHHH---HHHHH-hcCC----CCCccccHHHHHHhCCCCcHHH
Q 005304 375 ATNRADILDSALLRPGRFDR-------QVTVDVPDIRGRTE---ILKVH-GSNK----KFDADVSLDVIAMRTPGFSGAD 439 (703)
Q Consensus 375 aTN~p~~LD~aLlRpgRfdr-------~I~i~~Pd~~eR~~---IL~~~-l~~~----~l~~dvdl~~lA~~t~G~sgad 439 (703)
||+++= ..|.+.|||-+ ...|.+|..++|.+ .|.++ .+.. .++++.-...++...+| +.++
T Consensus 453 ath~dl---~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nire 528 (606)
T COG3284 453 ATHRDL---AQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRE 528 (606)
T ss_pred ccCcCH---HHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHH
Confidence 998732 24566677643 56788898888865 22222 2221 22333323445556676 6788
Q ss_pred HHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 005304 440 LANLLNEAAILAGRRGKAAISSKEIDDSID 469 (703)
Q Consensus 440 L~~lv~eAa~~A~r~~~~~It~~di~~Al~ 469 (703)
|.|+++.++..+ ....|...|+...+-
T Consensus 529 l~~v~~~~~~l~---~~g~~~~~dlp~~l~ 555 (606)
T COG3284 529 LDNVIERLAALS---DGGRIRVSDLPPELL 555 (606)
T ss_pred HHHHHHHHHHcC---CCCeeEcccCCHHHH
Confidence 888888887665 334455555554443
No 238
>PF13173 AAA_14: AAA domain
Probab=98.56 E-value=5e-07 Score=84.51 Aligned_cols=118 Identities=23% Similarity=0.316 Sum_probs=72.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCC
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTG 342 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~ 342 (703)
+.++|+||+|+|||++++.++.... ..++++++.+......... + +.+.|.+.....+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~iDEiq~~------- 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADP-D-LLEYFLELIKPGKKYIFIDEIQYL------- 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhh-h-hHHHHHHhhccCCcEEEEehhhhh-------
Confidence 4689999999999999999998876 8889999887654321111 1 223333322235689999999998
Q ss_pred CCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc----cccccCCCccceeeeecCCChhh
Q 005304 343 IGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL----DSALLRPGRFDRQVTVDVPDIRG 405 (703)
Q Consensus 343 ~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L----D~aLlRpgRfdr~I~i~~Pd~~e 405 (703)
+.....+..+...- .++-+|.|+.....+ ...+ +||.. .+++.+.+..|
T Consensus 74 -----~~~~~~lk~l~d~~------~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 74 -----PDWEDALKFLVDNG------PNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred -----ccHHHHHHHHHHhc------cCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 12455555555521 233444444332222 2223 35764 66777777654
No 239
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.55 E-value=2.1e-07 Score=92.47 Aligned_cols=99 Identities=27% Similarity=0.391 Sum_probs=61.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHHhhh-hhhHHHHHHHHHHhcCCeEEEEcCcccccccC
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~~G~-~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r 339 (703)
..|++|+||||||||+||.+++.++ |.++.+++.+++.+.+... ......+.++... ...+|+|||+....
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~--- 121 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEP--- 121 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS----
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceee---
Confidence 4599999999999999999998866 8999999999998765322 1122334455443 34689999986531
Q ss_pred CCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 340 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 340 ~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
..++....+.+++..-- .+ + -.|.|||.
T Consensus 122 ------~~~~~~~~l~~ii~~R~---~~-~-~tIiTSN~ 149 (178)
T PF01695_consen 122 ------LSEWEAELLFEIIDERY---ER-K-PTIITSNL 149 (178)
T ss_dssp --------HHHHHCTHHHHHHHH---HT---EEEEEESS
T ss_pred ------ecccccccchhhhhHhh---cc-c-CeEeeCCC
Confidence 23334444444444322 22 2 35558885
No 240
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=6.8e-07 Score=106.38 Aligned_cols=128 Identities=29% Similarity=0.356 Sum_probs=92.3
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHH----
Q 005304 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM---- 303 (703)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~---- 303 (703)
+.|+|++++...+.++|...+..-. +. +++-.++|.||.|+|||-||+++|... .-.|+.+++++|.+-
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~-~~---~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLK-DP---NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccC-CC---CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 3689999999998888876443211 00 355679999999999999999999977 568999999987761
Q ss_pred -----HhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccC---------CCC
Q 005304 304 -----FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG---------NTG 369 (703)
Q Consensus 304 -----~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~---------~~~ 369 (703)
|+|. .....+.+..+....|||+|||||.- + ...++.|+..+|...- -.+
T Consensus 638 gsp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkA-----------h---~~v~n~llq~lD~GrltDs~Gr~Vd~kN 701 (898)
T KOG1051|consen 638 GSPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKA-----------H---PDVLNILLQLLDRGRLTDSHGREVDFKN 701 (898)
T ss_pred CCCcccccc--hhHHHHHHHHhcCCceEEEEechhhc-----------C---HHHHHHHHHHHhcCccccCCCcEeeccc
Confidence 2332 23446677777777799999999986 2 3356656666654321 236
Q ss_pred eEEEEecCC
Q 005304 370 IIVIAATNR 378 (703)
Q Consensus 370 ViVIaaTN~ 378 (703)
+|||+|+|.
T Consensus 702 ~I~IMTsn~ 710 (898)
T KOG1051|consen 702 AIFIMTSNV 710 (898)
T ss_pred eEEEEeccc
Confidence 899999986
No 241
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=7e-07 Score=96.87 Aligned_cols=132 Identities=18% Similarity=0.288 Sum_probs=91.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC-------------------------CEEEeechhH---HH-HHhhhhhhHH
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------------------------PFFSISGSEF---VE-MFVGVGASRV 312 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~-------------------------pfi~is~se~---~~-~~~G~~~~~i 312 (703)
+.|..+||+||+|+|||++|+++|+.+.+ .|++++...- .. .....+.+.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 77889999999999999999999987632 1222322100 00 0001235667
Q ss_pred HHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccC
Q 005304 313 RDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLR 388 (703)
Q Consensus 313 r~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlR 388 (703)
|++.+.+.. ...-|++||++|.+- ....|.|+..++... .++.+|.+|+.++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld--------------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN--------------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC--------------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH
Confidence 887777653 223589999999982 235566777776553 346677788888999999888
Q ss_pred CCccceeeeecCCChhhHHHHHHH
Q 005304 389 PGRFDRQVTVDVPDIRGRTEILKV 412 (703)
Q Consensus 389 pgRfdr~I~i~~Pd~~eR~~IL~~ 412 (703)
|+ ..+.|++|+.++..+.|..
T Consensus 163 --Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 --RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred --Hh-hhhcCCCCCHHHHHHHHHh
Confidence 66 5788999999888777764
No 242
>PRK06921 hypothetical protein; Provisional
Probab=98.48 E-value=1e-06 Score=92.94 Aligned_cols=68 Identities=25% Similarity=0.355 Sum_probs=48.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc----CCCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCccc
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 334 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~ 334 (703)
..+++|+||||+|||+|+.|+|+++ +..+++++..++...+... .......++.. ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 4589999999999999999999875 6788999987776543221 11222233332 2357999999954
No 243
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=2.8e-06 Score=91.76 Aligned_cols=130 Identities=21% Similarity=0.276 Sum_probs=93.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------------------EEEeechhHHHHHhhhhhhHHHHHHH
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-----------------------FFSISGSEFVEMFVGVGASRVRDLFK 317 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p-----------------------fi~is~se~~~~~~G~~~~~ir~lF~ 317 (703)
.+.|..+||+||.|+||+++|+++|..+-+. |+.+...+ .. ...+.+.+|++-+
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~--~~I~vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EG--KSITVEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CC--CcCCHHHHHHHHH
Confidence 4567799999999999999999999866321 22221110 00 0113355676655
Q ss_pred HHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccc
Q 005304 318 KAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 393 (703)
Q Consensus 318 ~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd 393 (703)
.+.. ...-|++||++|.+ .....|.||+.++. +..++++|..|+.++.|-|.+++ |.
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m--------------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RC- 159 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAM--------------NESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RC- 159 (319)
T ss_pred HHhhCcccCCceEEEecchhhh--------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cc-
Confidence 5433 22369999999998 24577899999985 45568888889999999999999 77
Q ss_pred eeeeecCCChhhHHHHHHH
Q 005304 394 RQVTVDVPDIRGRTEILKV 412 (703)
Q Consensus 394 r~I~i~~Pd~~eR~~IL~~ 412 (703)
..+.|+.|+.++..+.+..
T Consensus 160 q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 160 QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred eeEeCCCCCHHHHHHHHHH
Confidence 4789999999888887764
No 244
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.38 E-value=8.6e-07 Score=82.14 Aligned_cols=97 Identities=21% Similarity=0.384 Sum_probs=58.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc--------CCCEEEeechhHH------HHH---hh------hhhhHHHHHH-HHHH
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISGSEFV------EMF---VG------VGASRVRDLF-KKAK 320 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~--------~~pfi~is~se~~------~~~---~G------~~~~~ir~lF-~~A~ 320 (703)
+.++++||||+|||++++.++... ..+++++++.... ... .+ .....+.+.+ +...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 469999999999999999999877 7888888876543 111 01 1122233333 3334
Q ss_pred hcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 005304 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (703)
Q Consensus 321 ~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaT 376 (703)
.....+|+|||+|.+. ....++.|...++ ..+-.++++++.
T Consensus 85 ~~~~~~lviDe~~~l~-------------~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF-------------SDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HCTEEEEEEETTHHHH-------------THHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred hcCCeEEEEeChHhcC-------------CHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 4444599999999982 1445666655555 233345555544
No 245
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.31 E-value=2.4e-06 Score=93.96 Aligned_cols=140 Identities=21% Similarity=0.279 Sum_probs=81.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCC-CEEEeechhHHHHHhhh------hhhHHHHHHHHHHhcCCeEEEEcCcc
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-PFFSISGSEFVEMFVGV------GASRVRDLFKKAKENAPCIVFVDEID 333 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~~-pfi~is~se~~~~~~G~------~~~~ir~lF~~A~~~aP~ILfIDEID 333 (703)
...|+|++||||+|+|||+|.-.+...+.. .-..++-.+|+...-.. ...-+..+-+...+ ...+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeee
Confidence 457899999999999999999999887754 23334444554321111 11122333333222 23499999987
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC-cccccccccCCCccceeeeecCCChhhHHHHHHH
Q 005304 334 AVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKV 412 (703)
Q Consensus 334 ~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~-p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~ 412 (703)
-- +-.....+..|+..+- ..++++|+|+|+ |+.|-+.=+...+|-. -.++|+.
T Consensus 138 V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp-----------~I~~l~~ 191 (362)
T PF03969_consen 138 VT-----------DIADAMILKRLFEALF----KRGVVLVATSNRPPEDLYKNGLQRERFLP-----------FIDLLKR 191 (362)
T ss_pred cc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCChHHHcCCcccHHHHHH-----------HHHHHHh
Confidence 64 1122345566666553 468999999997 4544332222223321 1356677
Q ss_pred HhcCCCCCccccHHH
Q 005304 413 HGSNKKFDADVSLDV 427 (703)
Q Consensus 413 ~l~~~~l~~dvdl~~ 427 (703)
++.-..++...|...
T Consensus 192 ~~~vv~ld~~~DyR~ 206 (362)
T PF03969_consen 192 RCDVVELDGGVDYRR 206 (362)
T ss_pred ceEEEEecCCCchhh
Confidence 766666666666544
No 246
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.31 E-value=2.4e-06 Score=90.46 Aligned_cols=164 Identities=20% Similarity=0.321 Sum_probs=82.1
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcC-CC--EEEeechhHHHH
Q 005304 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-VP--FFSISGSEFVEM 303 (703)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~-~p--fi~is~se~~~~ 303 (703)
++.|.++.=.-..-.+...+++.+-.. .+++||+||+|||||.+++..-.+.. -. ...++++....
T Consensus 6 ~~~~~~~~VpT~dt~r~~~ll~~l~~~----------~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt- 74 (272)
T PF12775_consen 6 EMPFNEILVPTVDTVRYSYLLDLLLSN----------GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT- 74 (272)
T ss_dssp -------T---HHHHHHHHHHHHHHHC----------TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH-
T ss_pred ccccceEEeCcHHHHHHHHHHHHHHHc----------CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC-
Confidence 345555544433334445555543222 23899999999999999988766553 22 23444443221
Q ss_pred HhhhhhhHHHHHHHHH-----------HhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccC------
Q 005304 304 FVGVGASRVRDLFKKA-----------KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG------ 366 (703)
Q Consensus 304 ~~G~~~~~ir~lF~~A-----------~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~------ 366 (703)
...+..+.+.. ..+..+|+||||+..-....- +.....+.+.|+++. .|+-.
T Consensus 75 -----s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d~y-----gtq~~iElLRQ~i~~-~g~yd~~~~~~ 143 (272)
T PF12775_consen 75 -----SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQPDKY-----GTQPPIELLRQLIDY-GGFYDRKKLEW 143 (272)
T ss_dssp -----HHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S---TT-----S--HHHHHHHHHHHC-SEEECTTTTEE
T ss_pred -----HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCCCCC-----CCcCHHHHHHHHHHh-cCcccCCCcEE
Confidence 12222222211 112347999999987632221 112222344444432 12211
Q ss_pred --CCCeEEEEecCCcc---cccccccCCCccceeeeecCCChhhHHHHHHHHhc
Q 005304 367 --NTGIIVIAATNRAD---ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (703)
Q Consensus 367 --~~~ViVIaaTN~p~---~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~ 415 (703)
-.++.+|||+|.+. .+++.++| .| ..+.++.|+.+....|+...+.
T Consensus 144 ~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 144 KSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp EEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE----TCCHHHHHHHHHHH
T ss_pred EEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEecCCChHHHHHHHHHHHh
Confidence 12688889988533 47777777 56 4789999999998888766554
No 247
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.30 E-value=8.3e-06 Score=91.51 Aligned_cols=211 Identities=16% Similarity=0.225 Sum_probs=112.7
Q ss_pred ccccccCCCccccccccchHHHHHHHHHHHH--hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEee
Q 005304 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF--LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (703)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~--l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (703)
..|.++..+-+.++++-...-..++++.+.. ...++ +| .+-+||+||+||||||.++.++.++|+.+...+
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~----l~---~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPK----LG---SRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccC----CC---ceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 5678888888999998765544444444431 11121 11 235889999999999999999999998887665
Q ss_pred ch-------h------HHHHHhhhhhhHHHHHHHHHHh------------cCCeEEEEcCcccccccCCCCCCCCChHHH
Q 005304 297 GS-------E------FVEMFVGVGASRVRDLFKKAKE------------NAPCIVFVDEIDAVGRQRGTGIGGGNDERE 351 (703)
Q Consensus 297 ~s-------e------~~~~~~G~~~~~ir~lF~~A~~------------~aP~ILfIDEID~L~~~r~~~~~~~~~e~~ 351 (703)
-. . +........-..+......+.+ ..|.+|+|||+-..... + ..
T Consensus 143 Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~---------d-~~ 212 (634)
T KOG1970|consen 143 NPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR---------D-DS 212 (634)
T ss_pred CCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh---------h-hH
Confidence 11 1 1110111111122222222211 34679999999777421 1 12
Q ss_pred HHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCC------CccceeeeecCCChhhHHHHHHHHhcCCC--C----
Q 005304 352 QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRP------GRFDRQVTVDVPDIRGRTEILKVHGSNKK--F---- 419 (703)
Q Consensus 352 ~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRp------gRfdr~I~i~~Pd~~eR~~IL~~~l~~~~--l---- 419 (703)
..+...|.++-....-+-|++|.-++.++..++..+.+ .|.+ +|.|.+-...--++.|+..++... .
T Consensus 213 ~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k 291 (634)
T KOG1970|consen 213 ETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSGIK 291 (634)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccCCc
Confidence 22333333322222222233333233334433332221 1443 677877777666666665543321 1
Q ss_pred -CccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005304 420 -DADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (703)
Q Consensus 420 -~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A 451 (703)
.....++.++.. +++||+.+++.-.+.+
T Consensus 292 ~~~~~~v~~i~~~----s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 292 VPDTAEVELICQG----SGGDIRSAINSLQLSS 320 (634)
T ss_pred CchhHHHHHHHHh----cCccHHHHHhHhhhhc
Confidence 122334455543 4569999999888876
No 248
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.28 E-value=3e-06 Score=80.44 Aligned_cols=110 Identities=23% Similarity=0.285 Sum_probs=63.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHHh----------------------hh-hhh-HHHHHHHHH
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV----------------------GV-GAS-RVRDLFKKA 319 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~~----------------------G~-~~~-~ir~lF~~A 319 (703)
++|+||||+|||++++.++..+ +.+++++++........ .. ... ..+..+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 67788887654332110 00 001 111223445
Q ss_pred HhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcc
Q 005304 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (703)
Q Consensus 320 ~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 380 (703)
....|.+|+|||+..+.........+........+..++..+. ..++.+|.+++.+.
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 5677889999999988543211001112223344444444333 34566666666543
No 249
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.28 E-value=1.9e-06 Score=100.53 Aligned_cols=220 Identities=26% Similarity=0.313 Sum_probs=123.8
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhcc--CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEe-echhHHHHHhhh
Q 005304 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIG--ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI-SGSEFVEMFVGV 307 (703)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~lg--~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~i-s~se~~~~~~G~ 307 (703)
-.|.|.+.+|+.+.=. .+.-..+...-| .+-.-+|||.|.||||||.|.|.+++-+-..++.- .++. -+|.
T Consensus 286 PsIyG~e~VKkAilLq--LfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss----~~GL 359 (682)
T COG1241 286 PSIYGHEDVKKAILLQ--LFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS----AAGL 359 (682)
T ss_pred ccccCcHHHHHHHHHH--hcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccc----ccCc
Confidence 3566777766654322 122222111111 12224799999999999999999998775544321 1111 1233
Q ss_pred hhhHHHHHH--H---HHH---hcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc-----------CCC
Q 005304 308 GASRVRDLF--K---KAK---ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GNT 368 (703)
Q Consensus 308 ~~~~ir~lF--~---~A~---~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~-----------~~~ 368 (703)
++..+++-+ + +|- -..+.|.+|||+|.+ +++ ..+.+...|+... -+.
T Consensus 360 TAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm-----------~~~---dr~aihEaMEQQtIsIaKAGI~atLnA 425 (682)
T COG1241 360 TAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM-----------NEE---DRVAIHEAMEQQTISIAKAGITATLNA 425 (682)
T ss_pred eeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC-----------ChH---HHHHHHHHHHhcEeeecccceeeecch
Confidence 333333322 1 110 123579999999998 122 2334445554321 123
Q ss_pred CeEEEEecCCcc-------------cccccccCCCccceee-eecCCChhhHHH----HHHHHhcCC-------------
Q 005304 369 GIIVIAATNRAD-------------ILDSALLRPGRFDRQV-TVDVPDIRGRTE----ILKVHGSNK------------- 417 (703)
Q Consensus 369 ~ViVIaaTN~p~-------------~LD~aLlRpgRfdr~I-~i~~Pd~~eR~~----IL~~~l~~~------------- 417 (703)
..-|+||+|... .|++.|++ |||..+ -.+.||.+.=.. ++..|....
T Consensus 426 RcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~ 503 (682)
T COG1241 426 RCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEV 503 (682)
T ss_pred hhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhcccccccccccccccc
Confidence 456888888644 57888999 999854 345676653333 444442110
Q ss_pred --------------------CCCccccHHHHH-----Hh----------CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHH
Q 005304 418 --------------------KFDADVSLDVIA-----MR----------TPGFSGADLANLLNEAAILAGRRGKAAISSK 462 (703)
Q Consensus 418 --------------------~l~~dvdl~~lA-----~~----------t~G~sgadL~~lv~eAa~~A~r~~~~~It~~ 462 (703)
+.-.+...+.|. .+ +-..|.++|+.+++-|-..|.-+-+..|+.+
T Consensus 504 ~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~e 583 (682)
T COG1241 504 EERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEE 583 (682)
T ss_pred ccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHH
Confidence 000010011111 11 1236788999999999999988888999999
Q ss_pred HHHHHHHHHH
Q 005304 463 EIDDSIDRIV 472 (703)
Q Consensus 463 di~~Al~~v~ 472 (703)
|+++|++-+.
T Consensus 584 D~~eAi~lv~ 593 (682)
T COG1241 584 DVDEAIRLVD 593 (682)
T ss_pred HHHHHHHHHH
Confidence 9999987543
No 250
>PF05729 NACHT: NACHT domain
Probab=98.26 E-value=1.1e-05 Score=77.04 Aligned_cols=140 Identities=19% Similarity=0.257 Sum_probs=73.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc------C--CC-EEEeechhHHHH---------H---hhhhhhHHHHHH-HHHHhcC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA------G--VP-FFSISGSEFVEM---------F---VGVGASRVRDLF-KKAKENA 323 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~------~--~p-fi~is~se~~~~---------~---~G~~~~~ir~lF-~~A~~~a 323 (703)
-++|+|+||+|||++++.++... . .+ ++++++.++... . .......+...+ ..+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 48999999999999999998755 1 12 334444433321 0 111111122222 2233456
Q ss_pred CeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC--cccccccccCCCccceeeeecCC
Q 005304 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR--ADILDSALLRPGRFDRQVTVDVP 401 (703)
Q Consensus 324 P~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~--p~~LD~aLlRpgRfdr~I~i~~P 401 (703)
+++|+||.+|.+...... .........+.+++. . ....++.+|.+++. ...+...+... ..+.+..-
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~---~-~~~~~~~liit~r~~~~~~~~~~~~~~----~~~~l~~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLP---Q-ALPPGVKLIITSRPRAFPDLRRRLKQA----QILELEPF 150 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhh---h-ccCCCCeEEEEEcCChHHHHHHhcCCC----cEEEECCC
Confidence 789999999999532211 000112223333333 2 11223334444432 22222222221 46788888
Q ss_pred ChhhHHHHHHHHhcC
Q 005304 402 DIRGRTEILKVHGSN 416 (703)
Q Consensus 402 d~~eR~~IL~~~l~~ 416 (703)
+.+++.++++.++++
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999988764
No 251
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.26 E-value=9.3e-06 Score=84.01 Aligned_cols=124 Identities=26% Similarity=0.330 Sum_probs=73.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGG 345 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~ 345 (703)
|..++||+|||||..+|++|..+|.+++.++|++-.+. ..+..+|.-+... .+.+++||++.+
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~~-GaW~cfdefnrl---------- 96 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQS-GAWLCFDEFNRL---------- 96 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHHH-T-EEEEETCCCS----------
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhhc-Cchhhhhhhhhh----------
Confidence 77899999999999999999999999999999985542 4566677665443 479999999998
Q ss_pred CChHHHHHHHHHHhhh----cC-----------ccCCCCeEEEEecCC----cccccccccCCCccceeeeecCCChhhH
Q 005304 346 GNDEREQTLNQLLTEM----DG-----------FEGNTGIIVIAATNR----ADILDSALLRPGRFDRQVTVDVPDIRGR 406 (703)
Q Consensus 346 ~~~e~~~~l~~LL~~l----d~-----------~~~~~~ViVIaaTN~----p~~LD~aLlRpgRfdr~I~i~~Pd~~eR 406 (703)
+.+.-.++.+.+..+ .. +.-+.+.-+..|.|. ...|++.|+. .| |.+.+..||....
T Consensus 97 -~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~I 172 (231)
T PF12774_consen 97 -SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSLI 172 (231)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHHH
T ss_pred -hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHHH
Confidence 223333333333322 11 011223344445553 3467877776 44 8899999998755
Q ss_pred HHHH
Q 005304 407 TEIL 410 (703)
Q Consensus 407 ~~IL 410 (703)
.+++
T Consensus 173 ~ei~ 176 (231)
T PF12774_consen 173 AEIL 176 (231)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 252
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=98.25 E-value=9.7e-07 Score=79.22 Aligned_cols=95 Identities=17% Similarity=0.206 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCCCCCCCCCccccHHHHHHHHhcCCeeEEEEeeCCeE--------EEEEeccccCCCce
Q 005304 65 LKKLVGNVGVGTALLGSG-KAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTI--------AIVEAISPELGNRV 135 (703)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~y~~f~~~~~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~ 135 (703)
++|++++++++++++.+. .. ...+..+++||+|+++|++|+|++|.+.++... ..............
T Consensus 2 ~~~ili~~vi~~l~~~~~~~~----~~~~~~~i~YS~F~~~l~~g~V~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (110)
T PF06480_consen 2 ILYILIILVILLLFNFFFFNS----NNSQTKEISYSEFLQMLEKGNVKKVVIQNDKITEPKKDNPTGDIEGKTKDGSKYT 77 (110)
T ss_dssp -----------------S----------SSEE--HHHHHHTGGGT-EEEEEEETTTEE---------EEEE-TTTS-STT
T ss_pred cceehhHHHHHHHHHHHHhhc----ccCCCcEECHHHHHHHHHcCCEEEEEEECCEEEEeeeccccccccccccCCCccE
Confidence 567777777777665553 21 234677899999999999999999999866544 11111111111122
Q ss_pred eEEEEEcCC---CcHHHHHHHHhcCcceeec
Q 005304 136 QRVRVQLPG---LSQELLQKFREKNIDFAAH 163 (703)
Q Consensus 136 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 163 (703)
.......+. ..+.+.+.+.++|+++...
T Consensus 78 ~~~~~~~~~~~~~~~~L~~~~~~~~v~~~~~ 108 (110)
T PF06480_consen 78 TFYTPSIPSVDSFDEFLIEALVEKGVKYESV 108 (110)
T ss_dssp --EEEE-S-HHHHHHHHHHHHHHTT--TTT-
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHCCCcccee
Confidence 222223221 2245677777888876554
No 253
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.20 E-value=6.3e-05 Score=77.81 Aligned_cols=184 Identities=22% Similarity=0.243 Sum_probs=114.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC---CCEEEeec-----hhHHHHHhhh------------hhhHHHHHHHHHHh-cCC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISG-----SEFVEMFVGV------------GASRVRDLFKKAKE-NAP 324 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~---~pfi~is~-----se~~~~~~G~------------~~~~ir~lF~~A~~-~aP 324 (703)
-+.++|+.|+|||.+.|++....+ +-.++++. +.+.+.++-+ ....-+.+.+..++ ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 377899999999999998766553 22334432 2333322211 12222334444444 456
Q ss_pred eEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCC------Cccceeeee
Q 005304 325 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRP------GRFDRQVTV 398 (703)
Q Consensus 325 ~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRp------gRfdr~I~i 398 (703)
.++++||.+.+. ......+..|.+.-++....-.++.|+-.. |.+.++.| -|++-.|++
T Consensus 133 v~l~vdEah~L~-----------~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~~R~~ir~~l 197 (269)
T COG3267 133 VVLMVDEAHDLN-----------DSALEALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELEQRIDIRIEL 197 (269)
T ss_pred eEEeehhHhhhC-----------hhHHHHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhhheEEEEEec
Confidence 899999999983 222233333333333333334466665332 22222211 177766888
Q ss_pred cCCChhhHHHHHHHHhcCCCCC----ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Q 005304 399 DVPDIRGRTEILKVHGSNKKFD----ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (703)
Q Consensus 399 ~~Pd~~eR~~IL~~~l~~~~l~----~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~ 465 (703)
++.+..+-...++.+++..... .+..+..++..+.| .|+-+.++|..|...|...|...|+...+.
T Consensus 198 ~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 198 PPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred CCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 8888888888898888765433 33346778888888 588999999999999999999988877654
No 254
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.18 E-value=5.7e-07 Score=97.85 Aligned_cols=216 Identities=23% Similarity=0.265 Sum_probs=110.8
Q ss_pred ccccchHHHHHHHH-HHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhh
Q 005304 232 DVAGVDEAKQDFME-VVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGAS 310 (703)
Q Consensus 232 dv~G~de~k~~L~e-~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~ 310 (703)
+|.|.+.+|..+.= ++........ .....+-.-++||+|.||||||.|.+.++.-+... +++++..-.. .|.++.
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~~~s~--~gLta~ 100 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGKGSSA--AGLTAS 100 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSE-EEEECCGSTC--CCCCEE
T ss_pred cCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCce-EEECCCCccc--CCccce
Confidence 57788888875542 1111111000 00011223489999999999999999886554332 3333322100 000000
Q ss_pred ----------HH-HHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc-----------CCC
Q 005304 311 ----------RV-RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GNT 368 (703)
Q Consensus 311 ----------~i-r~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~-----------~~~ 368 (703)
.+ ...+-.| ...|++|||+|.+- + .....|++.|+... -+.
T Consensus 101 ~~~d~~~~~~~leaGalvla---d~GiccIDe~dk~~-----------~---~~~~~l~eaMEqq~isi~kagi~~~l~a 163 (331)
T PF00493_consen 101 VSRDPVTGEWVLEAGALVLA---DGGICCIDEFDKMK-----------E---DDRDALHEAMEQQTISIAKAGIVTTLNA 163 (331)
T ss_dssp ECCCGGTSSECEEE-HHHHC---TTSEEEECTTTT-------------C---HHHHHHHHHHHCSCEEECTSSSEEEEE-
T ss_pred eccccccceeEEeCCchhcc---cCceeeeccccccc-----------c---hHHHHHHHHHHcCeeccchhhhcccccc
Confidence 00 0122222 23599999999982 1 23445555565421 123
Q ss_pred CeEEEEecCCcc-------------cccccccCCCccceeeee-cCCChhhHHHHHHHHhcCCC----------------
Q 005304 369 GIIVIAATNRAD-------------ILDSALLRPGRFDRQVTV-DVPDIRGRTEILKVHGSNKK---------------- 418 (703)
Q Consensus 369 ~ViVIaaTN~p~-------------~LD~aLlRpgRfdr~I~i-~~Pd~~eR~~IL~~~l~~~~---------------- 418 (703)
..-|+|++|... .+++.|++ |||..+.+ +.||.+.-..+.++.+....
T Consensus 164 r~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~ 241 (331)
T PF00493_consen 164 RCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKP 241 (331)
T ss_dssp --EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-T
T ss_pred hhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCc
Confidence 578999998654 47889999 99987654 67775555444443332211
Q ss_pred CCcccc--HHHHHH------------------------------hCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHH
Q 005304 419 FDADVS--LDVIAM------------------------------RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDD 466 (703)
Q Consensus 419 l~~dvd--l~~lA~------------------------------~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~ 466 (703)
++.+.- +-..++ .....+.+.|+.+++-|...|.-+-+..|+.+|+..
T Consensus 242 ~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~ 321 (331)
T PF00493_consen 242 ISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEE 321 (331)
T ss_dssp T-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHH
T ss_pred cCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHH
Confidence 110000 111122 012356778899999999999999999999999999
Q ss_pred HHHH
Q 005304 467 SIDR 470 (703)
Q Consensus 467 Al~~ 470 (703)
|+.=
T Consensus 322 Ai~L 325 (331)
T PF00493_consen 322 AIRL 325 (331)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
No 255
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.14 E-value=9.2e-06 Score=82.03 Aligned_cols=115 Identities=22% Similarity=0.295 Sum_probs=66.7
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHH-HHHhhh----------------------hhhHHH
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV-EMFVGV----------------------GASRVR 313 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~-~~~~G~----------------------~~~~ir 313 (703)
|.+...-++++||||+|||+++..++.+. +.+++++++.++. +.+... ....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 33444568999999999999999987543 6788999886521 111100 011133
Q ss_pred HHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005304 314 DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (703)
Q Consensus 314 ~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (703)
.+.+.+.+..|++|+||-|.++....... ......+.+..++..|..+....++.++.+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~~---~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELSD---DRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhCC---ccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 34444555678999999999985421110 11122233344444444444456677777654
No 256
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.13 E-value=2.2e-05 Score=89.33 Aligned_cols=222 Identities=18% Similarity=0.249 Sum_probs=127.8
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhcc--CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhh
Q 005304 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIG--ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 306 (703)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg--~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G 306 (703)
-|-.|.|.+.+|.-+.-.+ +..-.++..-| ++-.-+|+|.|.||||||-+.+++++-+-..++ +++..- .-.|
T Consensus 343 l~PsIyGhe~VK~GilL~L--fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY-tsGkaS--SaAG 417 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSL--FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY-TSGKAS--SAAG 417 (764)
T ss_pred hCccccchHHHHhhHHHHH--hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE-ecCccc--cccc
Confidence 3678999999998665322 22222222222 223348999999999999999999887654433 232110 0012
Q ss_pred hhhhHHHH-----HHHHHHh---cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc-----------CC
Q 005304 307 VGASRVRD-----LFKKAKE---NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GN 367 (703)
Q Consensus 307 ~~~~~ir~-----lF~~A~~---~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~-----------~~ 367 (703)
.++.-+++ .--+|-. ....|-+|||+|.+..+ . + ..+++.|+... -+
T Consensus 418 LTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~----------d-q---vAihEAMEQQtISIaKAGv~aTLn 483 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK----------D-Q---VAIHEAMEQQTISIAKAGVVATLN 483 (764)
T ss_pred ceEEEEecCCCCceeeecCcEEEccCceEEechhcccChH----------h-H---HHHHHHHHhheehheecceEEeec
Confidence 11111111 0001100 12358899999998311 1 1 23444554321 12
Q ss_pred CCeEEEEecCCcc-------------cccccccCCCccce-eeeecCCChhhHHHHHHHHhcCCCC-C------------
Q 005304 368 TGIIVIAATNRAD-------------ILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSNKKF-D------------ 420 (703)
Q Consensus 368 ~~ViVIaaTN~p~-------------~LD~aLlRpgRfdr-~I~i~~Pd~~eR~~IL~~~l~~~~l-~------------ 420 (703)
.+--||||+|... .+++++++ |||. .|-++-|++..-..|-++.+..... +
T Consensus 484 ARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e 561 (764)
T KOG0480|consen 484 ARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLE 561 (764)
T ss_pred chhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHH
Confidence 2346888888633 57889999 9998 4567888876655554443321110 0
Q ss_pred -------------cccc----------HHHHHH--------hCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 005304 421 -------------ADVS----------LDVIAM--------RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (703)
Q Consensus 421 -------------~dvd----------l~~lA~--------~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~ 469 (703)
+-.. ...+-+ .+...|.++|+.+++-+-.+|.-..+..||.+|+++|++
T Consensus 562 ~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~e 641 (764)
T KOG0480|consen 562 QVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVE 641 (764)
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHH
Confidence 0000 000100 123577899999999888888888888999999999887
Q ss_pred HH
Q 005304 470 RI 471 (703)
Q Consensus 470 ~v 471 (703)
-+
T Consensus 642 Ll 643 (764)
T KOG0480|consen 642 LL 643 (764)
T ss_pred HH
Confidence 43
No 257
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.11 E-value=1.4e-05 Score=86.08 Aligned_cols=136 Identities=20% Similarity=0.251 Sum_probs=80.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCE-EEeechhHHHH-------HhhhhhhHHHHHHHHHHhcCCeEEEEcCcc
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-FSISGSEFVEM-------FVGVGASRVRDLFKKAKENAPCIVFVDEID 333 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~pf-i~is~se~~~~-------~~G~~~~~ir~lF~~A~~~aP~ILfIDEID 333 (703)
.+|+|+.|||+-|.|||+|.-.+-..+..+- ..+....|+-. ..|... -+..+-+.. ...-.||+|||++
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~d-pl~~iA~~~-~~~~~vLCfDEF~ 140 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTD-PLPPIADEL-AAETRVLCFDEFE 140 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCC-ccHHHHHHH-HhcCCEEEeeeee
Confidence 3789999999999999999999988775433 34444455421 223221 111111111 1222599999986
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC-cccccccccCCCccceeeeecCCChhhHHHHHHH
Q 005304 334 AVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKV 412 (703)
Q Consensus 334 ~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~-p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~ 412 (703)
-= +-...-++..|+.+|- ..+|++++|+|. |+.|-+.=+..+||-.. .++++.
T Consensus 141 Vt-----------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~-----------I~li~~ 194 (367)
T COG1485 141 VT-----------DIADAMILGRLLEALF----ARGVVLVATSNTAPDNLYKDGLQRERFLPA-----------IDLIKS 194 (367)
T ss_pred ec-----------ChHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHhcccchhHHhhHHH-----------HHHHHH
Confidence 42 1122346667777664 458999999996 55554333332344221 256777
Q ss_pred HhcCCCCCccccH
Q 005304 413 HGSNKKFDADVSL 425 (703)
Q Consensus 413 ~l~~~~l~~dvdl 425 (703)
++.-..++...|.
T Consensus 195 ~~~v~~vD~~~DY 207 (367)
T COG1485 195 HFEVVNVDGPVDY 207 (367)
T ss_pred heEEEEecCCccc
Confidence 7766666655553
No 258
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.09 E-value=4.9e-05 Score=87.17 Aligned_cols=157 Identities=26% Similarity=0.317 Sum_probs=82.5
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhcc-CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhh
Q 005304 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIG-ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGAS 310 (703)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~lg-~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~ 310 (703)
.|.|.|.+|+-+.-.+---+ .+.+...| .+-.-+|||+|.||||||.+.+.+++-+-.-.+ .|+-. +.-+|.++.
T Consensus 430 sIye~edvKkglLLqLfGGt-~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkG--sSavGLTay 505 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGT-RKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKG--SSAVGLTAY 505 (804)
T ss_pred hhhcccchhhhHHHHHhcCC-cccccccccccccceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCc--cchhcceee
Confidence 46666666665442221111 11122222 222347999999999999999999887643322 22210 000111110
Q ss_pred -----HHHHHHHHHH---hcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhh------cCc--cCCCCeEEEE
Q 005304 311 -----RVRDLFKKAK---ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM------DGF--EGNTGIIVIA 374 (703)
Q Consensus 311 -----~ir~lF~~A~---~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~l------d~~--~~~~~ViVIa 374 (703)
.-+++.-+.- -....|-+|||+|.+ ++..+.+|.+.+++= -|+ .-|...-|+|
T Consensus 506 Vtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM-----------~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLA 574 (804)
T KOG0478|consen 506 VTKDPDTRQLVLESGALVLSDNGICCIDEFDKM-----------SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLA 574 (804)
T ss_pred EEecCccceeeeecCcEEEcCCceEEchhhhhh-----------hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeee
Confidence 0111111110 012357889999998 222333443333221 011 1134567899
Q ss_pred ecCCcc-------------cccccccCCCccceee-eecCCChhh
Q 005304 375 ATNRAD-------------ILDSALLRPGRFDRQV-TVDVPDIRG 405 (703)
Q Consensus 375 aTN~p~-------------~LD~aLlRpgRfdr~I-~i~~Pd~~e 405 (703)
++|..+ .|+|.|++ |||.++ -++.||...
T Consensus 575 aANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~ 617 (804)
T KOG0478|consen 575 AANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERS 617 (804)
T ss_pred eeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhH
Confidence 999422 57899999 999844 667888763
No 259
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.05 E-value=5.6e-05 Score=95.11 Aligned_cols=178 Identities=19% Similarity=0.310 Sum_probs=101.3
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE---EEeech---h
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF---FSISGS---E 299 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pf---i~is~s---e 299 (703)
+...+++++|++...+++.+.+.. .....+-+-|+||+|+||||||+++++.....| ++++.. .
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 345689999999998888776632 122345689999999999999999988764432 111110 0
Q ss_pred HHHHH-----------hhhhhhHHH-------------HHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHH
Q 005304 300 FVEMF-----------VGVGASRVR-------------DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLN 355 (703)
Q Consensus 300 ~~~~~-----------~G~~~~~ir-------------~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~ 355 (703)
..+.+ .......+. ...++.-...+.+|+||+++.. ..+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~----------------~~l~ 312 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ----------------DVLD 312 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH----------------HHHH
Confidence 00000 000000000 1122223456789999998653 1233
Q ss_pred HHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccc--c-HHHHHHhC
Q 005304 356 QLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV--S-LDVIAMRT 432 (703)
Q Consensus 356 ~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dv--d-l~~lA~~t 432 (703)
.+....+.+. .+-.||.||...+.+ +....++.++++.|+.++..+++..++.+....++. + ...+++.+
T Consensus 313 ~L~~~~~~~~--~GsrIIiTTrd~~vl-----~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c 385 (1153)
T PLN03210 313 ALAGQTQWFG--SGSRIIVITKDKHFL-----RAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRA 385 (1153)
T ss_pred HHHhhCccCC--CCcEEEEEeCcHHHH-----HhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh
Confidence 3333333222 234556667654433 222467789999999999999999887544322210 1 23455666
Q ss_pred CCCc
Q 005304 433 PGFS 436 (703)
Q Consensus 433 ~G~s 436 (703)
.|..
T Consensus 386 ~GLP 389 (1153)
T PLN03210 386 GNLP 389 (1153)
T ss_pred CCCc
Confidence 6653
No 260
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=2.9e-05 Score=82.70 Aligned_cols=122 Identities=13% Similarity=0.156 Sum_probs=82.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH-------H--hh----hhhhHHHHHHHHHHhc----C
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-------F--VG----VGASRVRDLFKKAKEN----A 323 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~-------~--~G----~~~~~ir~lF~~A~~~----a 323 (703)
.+.|..+||+||+|+||+.+|.++|..+-+.--.-+|..+... . .+ -+.+.+|++.+.+... .
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 3567789999999999999999999877442100112111100 0 11 1345667776665432 2
Q ss_pred CeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCC
Q 005304 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 401 (703)
Q Consensus 324 P~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~P 401 (703)
.-|++||++|.+ ..+..|.||+-++. +..++++|..|+.++.+.|.+++ |+. .+.|+++
T Consensus 96 ~kv~ii~~ad~m--------------t~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRM--------------TLDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred ceEEEEechhhc--------------CHHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 359999999999 24577888988885 45678888888999999999998 663 4555544
No 261
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.02 E-value=7.8e-05 Score=78.55 Aligned_cols=172 Identities=19% Similarity=0.294 Sum_probs=90.8
Q ss_pred HHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHh--cCCC---EEEeechh------HHHHH---hhh
Q 005304 242 DFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE--AGVP---FFSISGSE------FVEMF---VGV 307 (703)
Q Consensus 242 ~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e--~~~p---fi~is~se------~~~~~---~G~ 307 (703)
++.++.+.|.... ...+-|.|+|++|+|||+||+.+++. .... ++.++.+. +.... .+.
T Consensus 4 ~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 4 EIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp HHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 3445555554421 23447999999999999999999987 3322 22333221 11111 111
Q ss_pred ---------hhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 308 ---------GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 308 ---------~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
......+.+...-...+++|+||+++... .+..+...+... ..+..||.||..
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~~~kilvTTR~ 138 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE----------------DLEELREPLPSF--SSGSKILVTTRD 138 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH----------------HH-------HCH--HSS-EEEEEESC
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc----------------cccccccccccc--cccccccccccc
Confidence 11223333334444558999999987651 222222222222 224556667765
Q ss_pred cccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCC----CCccccHHHHHHhCCCCcHHHHHHH
Q 005304 379 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK----FDADVSLDVIAMRTPGFSGADLANL 443 (703)
Q Consensus 379 p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~----l~~dvdl~~lA~~t~G~sgadL~~l 443 (703)
..... ..-. -+..++++..+.++-.+++...+.... ...+.....|+..+.|. |--|.-+
T Consensus 139 ~~v~~-~~~~---~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 139 RSVAG-SLGG---TDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp GGGGT-THHS---CEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccccc-cccc---cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 43321 1111 146789999999999999998876544 11122367889998875 5545444
No 262
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.98 E-value=1.1e-05 Score=78.97 Aligned_cols=59 Identities=24% Similarity=0.432 Sum_probs=37.1
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---EEEeechhH
Q 005304 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISGSEF 300 (703)
Q Consensus 233 v~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p---fi~is~se~ 300 (703)
++|.++..+++...+. ... ...++.++|+|++|+|||++++++...+..+ ++.++|...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~--------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQ--------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTS--------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHH--------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5788888888777775 222 2235689999999999999999987655322 777777655
No 263
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.96 E-value=5.4e-05 Score=74.57 Aligned_cols=70 Identities=29% Similarity=0.328 Sum_probs=46.3
Q ss_pred EEEEcCCCChHHHHHHHHHHh---cCCCEEEeechhHHHHHh------hh-----------------------hhh----
Q 005304 267 VLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMFV------GV-----------------------GAS---- 310 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e---~~~pfi~is~se~~~~~~------G~-----------------------~~~---- 310 (703)
+|++||||||||+++..++.+ .|.++++++..+-.+.+. |. +..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 789999999999999888664 377888887643222110 10 000
Q ss_pred -HHHHHHHHHHhcCCeEEEEcCccccc
Q 005304 311 -RVRDLFKKAKENAPCIVFVDEIDAVG 336 (703)
Q Consensus 311 -~ir~lF~~A~~~aP~ILfIDEID~L~ 336 (703)
....+...+....|.+|+||++..+.
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~ 108 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLL 108 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHh
Confidence 12333444456779999999999874
No 264
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.93 E-value=0.00021 Score=79.46 Aligned_cols=75 Identities=15% Similarity=0.215 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHh----cCCCEEEeechhHHHHHhhhhhhHHH
Q 005304 238 EAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSISGSEFVEMFVGVGASRVR 313 (703)
Q Consensus 238 e~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e----~~~pfi~is~se~~~~~~G~~~~~ir 313 (703)
.....|...+.++.... ++++.||+|||||+++.+++.. .| -+++.+.++.....
T Consensus 194 ~k~~~L~rl~~fve~~~-----------Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~------- 252 (449)
T TIGR02688 194 QKLLLLARLLPLVEPNY-----------NLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST------- 252 (449)
T ss_pred HHHHHHHhhHHHHhcCC-----------cEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH-------
Confidence 34444555556665543 7999999999999999999776 24 33444555433211
Q ss_pred HHHHHHHhcCCeEEEEcCcccc
Q 005304 314 DLFKKAKENAPCIVFVDEIDAV 335 (703)
Q Consensus 314 ~lF~~A~~~aP~ILfIDEID~L 335 (703)
..+... ....+|+|||+..+
T Consensus 253 ~~lg~v--~~~DlLI~DEvgyl 272 (449)
T TIGR02688 253 RQIGLV--GRWDVVAFDEVATL 272 (449)
T ss_pred HHHhhh--ccCCEEEEEcCCCC
Confidence 111111 33579999999886
No 265
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.92 E-value=5.7e-05 Score=85.55 Aligned_cols=78 Identities=26% Similarity=0.410 Sum_probs=57.0
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHHh------hh--------hhhHHHHHHHHHHhc
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV--------GASRVRDLFKKAKEN 322 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~~------G~--------~~~~ir~lF~~A~~~ 322 (703)
|.....-++|+|+||+|||+|+..+|... +.+++|++..+..+... |. ....+..+++..++.
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 34444568999999999999999998754 67899998876544321 11 112355667777777
Q ss_pred CCeEEEEcCcccccc
Q 005304 323 APCIVFVDEIDAVGR 337 (703)
Q Consensus 323 aP~ILfIDEID~L~~ 337 (703)
.|.+|+||+|..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 899999999999854
No 266
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.89 E-value=9.5e-05 Score=80.55 Aligned_cols=161 Identities=20% Similarity=0.255 Sum_probs=89.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEeechhHHHHH--------hhhhh-----------hHHHHHHHHH
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFVEMF--------VGVGA-----------SRVRDLFKKA 319 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~~--pfi~is~se~~~~~--------~G~~~-----------~~ir~lF~~A 319 (703)
..+|||++|||.-|||||+|.-.+-..+-. .=-.++..+|+... ...++ .-+.-+-++.
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI 190 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI 190 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence 456999999999999999999888654421 00122233333211 00000 0011111111
Q ss_pred HhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC-cccccccccCCCccceeeee
Q 005304 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADILDSALLRPGRFDRQVTV 398 (703)
Q Consensus 320 ~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~-p~~LD~aLlRpgRfdr~I~i 398 (703)
...-++|++||+..- +-...-+|++|...+- +.+|+++||+|+ |+.|-..=+...-| +
T Consensus 191 -a~ea~lLCFDEfQVT-----------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGlQR~~F-----~ 249 (467)
T KOG2383|consen 191 -AEEAILLCFDEFQVT-----------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGLQRENF-----I 249 (467)
T ss_pred -hhhceeeeechhhhh-----------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcchhhhhh-----h
Confidence 122479999998653 1112235666665543 458999999998 56554433321123 2
Q ss_pred cCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCC---CCcH-HHHHHHHHHHH
Q 005304 399 DVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTP---GFSG-ADLANLLNEAA 448 (703)
Q Consensus 399 ~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~---G~sg-adL~~lv~eAa 448 (703)
| -..+|+.++.-..+...+|....+.... .|.+ .|...++++-.
T Consensus 250 P------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 250 P------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred h------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 2 2367888888778888888873332211 1333 37777776665
No 267
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.86 E-value=4.3e-05 Score=84.91 Aligned_cols=223 Identities=21% Similarity=0.285 Sum_probs=128.0
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEee-chhHHHHHhhhhhh
Q 005304 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS-GSEFVEMFVGVGAS 310 (703)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is-~se~~~~~~G~~~~ 310 (703)
+|.|.+++|+.|.-++----+...-..+.++-.-+|+|.|.||+-||-|.+.+.+-+-...+..- +|. -+|.++.
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS----GVGLTAA 418 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS----GVGLTAA 418 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC----ccccchh
Confidence 68999999998876654322222112222333347999999999999999999887755544431 111 1233333
Q ss_pred HHHHHHHHH---Hh-----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhh----h--cCc--cCCCCeEEEE
Q 005304 311 RVRDLFKKA---KE-----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE----M--DGF--EGNTGIIVIA 374 (703)
Q Consensus 311 ~ir~lF~~A---~~-----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~----l--d~~--~~~~~ViVIa 374 (703)
-+++-...- .. ....|-+|||+|.+... ....+.+..++ + .|+ .-|...-|+|
T Consensus 419 VmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~-----------DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILa 487 (721)
T KOG0482|consen 419 VMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES-----------DRTAIHEVMEQQTISIAKAGINTTLNARTSILA 487 (721)
T ss_pred hhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh-----------hhHHHHHHHHhhhhhhhhhccccchhhhHHhhh
Confidence 332211000 00 11358899999998321 11122222211 1 111 1133567888
Q ss_pred ecCCcc-------------cccccccCCCcccee-eeecCCChhhHHHHHHH----HhcCCCCCc---cccHHH------
Q 005304 375 ATNRAD-------------ILDSALLRPGRFDRQ-VTVDVPDIRGRTEILKV----HGSNKKFDA---DVSLDV------ 427 (703)
Q Consensus 375 aTN~p~-------------~LD~aLlRpgRfdr~-I~i~~Pd~~eR~~IL~~----~l~~~~l~~---dvdl~~------ 427 (703)
|+|... .|+.||++ |||.. +-.+.||.+.-..+-++ |..+..... .++.+.
T Consensus 488 AANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~ 565 (721)
T KOG0482|consen 488 AANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYIS 565 (721)
T ss_pred hcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHH
Confidence 888532 58899999 99974 34567876655444433 322211110 011100
Q ss_pred HHHh-----------------------------CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 005304 428 IAMR-----------------------------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (703)
Q Consensus 428 lA~~-----------------------------t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v 471 (703)
+++. ..-.|++.|-.+++-+..+|.-|-...|..+|+++|+.-+
T Consensus 566 ~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLm 638 (721)
T KOG0482|consen 566 LAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLM 638 (721)
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 0000 1135778888999999999998888999999999999744
No 268
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.85 E-value=7.6e-05 Score=82.50 Aligned_cols=78 Identities=28% Similarity=0.452 Sum_probs=55.3
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHH------hhh--------hhhHHHHHHHHHHhc
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF------VGV--------GASRVRDLFKKAKEN 322 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~------~G~--------~~~~ir~lF~~A~~~ 322 (703)
|+.+..-++|+|+||+|||+|+..+|... +.++++++..+-.+.. .|. ....+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 34444568999999999999999998754 4688888876533321 111 122345666777778
Q ss_pred CCeEEEEcCcccccc
Q 005304 323 APCIVFVDEIDAVGR 337 (703)
Q Consensus 323 aP~ILfIDEID~L~~ 337 (703)
.|.+|+||+|..+..
T Consensus 158 ~~~lVVIDSIq~l~~ 172 (372)
T cd01121 158 KPDLVIIDSIQTVYS 172 (372)
T ss_pred CCcEEEEcchHHhhc
Confidence 899999999999854
No 269
>PHA00729 NTP-binding motif containing protein
Probab=97.82 E-value=5.4e-05 Score=77.82 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=22.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~ 289 (703)
.++|+|+||||||++|.++|.+++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999865
No 270
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.00048 Score=73.60 Aligned_cols=128 Identities=15% Similarity=0.165 Sum_probs=84.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCE-------EE-eechhHHH-----H-H---hh--hhhhHHHHHHHHHHh-
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------FS-ISGSEFVE-----M-F---VG--VGASRVRDLFKKAKE- 321 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~pf-------i~-is~se~~~-----~-~---~G--~~~~~ir~lF~~A~~- 321 (703)
+.+..+||+|| +||+++|+++|..+-+.- =. -+|..+.. - + .| ...+.+|++.+.+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 56778999996 689999999998663311 00 01111110 0 0 01 234567777666643
Q ss_pred ---cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeee
Q 005304 322 ---NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTV 398 (703)
Q Consensus 322 ---~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i 398 (703)
....|++||++|.+ .....|.||+.++. +..++++|..|+.++.+-|.+++ |. ..+.|
T Consensus 100 p~~~~~kV~II~~ad~m--------------~~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f 160 (290)
T PRK07276 100 GYEGKQQVFIIKDADKM--------------HVNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RT-QIFHF 160 (290)
T ss_pred cccCCcEEEEeehhhhc--------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cc-eeeeC
Confidence 22369999999999 24577899999985 44567888888889999999999 77 46777
Q ss_pred cCCChhhHHHHHH
Q 005304 399 DVPDIRGRTEILK 411 (703)
Q Consensus 399 ~~Pd~~eR~~IL~ 411 (703)
+. +.+...+++.
T Consensus 161 ~~-~~~~~~~~L~ 172 (290)
T PRK07276 161 PK-NEAYLIQLLE 172 (290)
T ss_pred CC-cHHHHHHHHH
Confidence 55 4454445554
No 271
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.80 E-value=0.00011 Score=75.25 Aligned_cols=116 Identities=22% Similarity=0.284 Sum_probs=64.5
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHH----HHHhhh-------------------hhhHHH
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----EMFVGV-------------------GASRVR 313 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~----~~~~G~-------------------~~~~ir 313 (703)
|.+...-++++||||+|||+++..+|.+. +.+++++++..+. ...... ....++
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 34444568999999999999999998744 7888999887221 111110 001112
Q ss_pred HHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005304 314 DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (703)
Q Consensus 314 ~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (703)
.+..... ..+++|+||-+.++....-.. .....+..+.+.+++..|..+....++.+|.+..
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~al~~~~~~~-~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq 160 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSATSLYRLELED-EEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQ 160 (225)
T ss_pred HHHHHHH-hcccEEEEeCcHHHhHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 2221112 578999999999886432110 0112222334444444444443445666666544
No 272
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.00076 Score=72.49 Aligned_cols=127 Identities=14% Similarity=0.129 Sum_probs=87.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC-----------C--EEEeechhHHHHHhhhhhhHHHHHHHHHHh-----cC
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----------P--FFSISGSEFVEMFVGVGASRVRDLFKKAKE-----NA 323 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~-----------p--fi~is~se~~~~~~G~~~~~ir~lF~~A~~-----~a 323 (703)
+.++..||+|+.|.||+.+|++++..+-+ | +..++... ...+...++++.+.... ..
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g-----~~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD-----KDLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-----CcCCHHHHHHHHHHhccCCcccCC
Confidence 34567999999999999999999987622 2 22222000 01123456666665522 24
Q ss_pred CeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCCh
Q 005304 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDI 403 (703)
Q Consensus 324 P~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~ 403 (703)
.-|++||++|.+ .....|.||..++.. ..++++|..|+.++.+-+.+++ |. ..+++.+|+.
T Consensus 91 ~KvvII~~~e~m--------------~~~a~NaLLK~LEEP--p~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~ 151 (299)
T PRK07132 91 KKILIIKNIEKT--------------SNSLLNALLKTIEEP--PKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQ 151 (299)
T ss_pred ceEEEEeccccc--------------CHHHHHHHHHHhhCC--CCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCH
Confidence 569999999888 234677888888863 4456677677778888888888 66 4689999988
Q ss_pred hhHHHHHHH
Q 005304 404 RGRTEILKV 412 (703)
Q Consensus 404 ~eR~~IL~~ 412 (703)
++..+.+..
T Consensus 152 ~~l~~~l~~ 160 (299)
T PRK07132 152 QKILAKLLS 160 (299)
T ss_pred HHHHHHHHH
Confidence 887776664
No 273
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.75 E-value=7.2e-05 Score=76.81 Aligned_cols=73 Identities=25% Similarity=0.262 Sum_probs=41.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH----------HHHhhhhhhHHHHHHHHHHh--cCCeEEEEc
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV----------EMFVGVGASRVRDLFKKAKE--NAPCIVFVD 330 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~----------~~~~G~~~~~ir~lF~~A~~--~aP~ILfID 330 (703)
.|.-+||||+||+|||++|+.+++. ..++..+.+.-. +.-.....+.+.+.+..+.. ....+|+||
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVID 88 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVID 88 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEe
Confidence 3567999999999999999999732 222222221100 00000111233333333322 345799999
Q ss_pred Ccccccc
Q 005304 331 EIDAVGR 337 (703)
Q Consensus 331 EID~L~~ 337 (703)
.|+.+..
T Consensus 89 sI~~l~~ 95 (220)
T TIGR01618 89 NISALQN 95 (220)
T ss_pred cHHHHHH
Confidence 9998854
No 274
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.75 E-value=0.0013 Score=69.72 Aligned_cols=126 Identities=22% Similarity=0.262 Sum_probs=74.1
Q ss_pred ccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCEEEe--ec-----h
Q 005304 232 DVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSI--SG-----S 298 (703)
Q Consensus 232 dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~-----~pfi~i--s~-----s 298 (703)
.+.|+.-+++.+...+.. +.++. -+.|.-+=|+|++||||.+.++.||+... -|++.. .. .
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 578999998887777654 44443 23355666899999999999999999762 222211 00 1
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhh---hcCccCCCCeEEEEe
Q 005304 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE---MDGFEGNTGIIVIAA 375 (703)
Q Consensus 299 e~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~---ld~~~~~~~ViVIaa 375 (703)
.-++.|-.+-..+ +-..+..+..+|.++||.|.+ +...-+++.-+|.. .+|.. ..+-|+|.-
T Consensus 157 ~~ie~Yk~eL~~~---v~~~v~~C~rslFIFDE~DKm-----------p~gLld~lkpfLdyyp~v~gv~-frkaIFIfL 221 (344)
T KOG2170|consen 157 SKIEDYKEELKNR---VRGTVQACQRSLFIFDEVDKL-----------PPGLLDVLKPFLDYYPQVSGVD-FRKAIFIFL 221 (344)
T ss_pred HHHHHHHHHHHHH---HHHHHHhcCCceEEechhhhc-----------CHhHHHHHhhhhcccccccccc-ccceEEEEE
Confidence 1112222222223 333445677789999999998 33344445555542 22222 224566666
Q ss_pred cCC
Q 005304 376 TNR 378 (703)
Q Consensus 376 TN~ 378 (703)
+|.
T Consensus 222 SN~ 224 (344)
T KOG2170|consen 222 SNA 224 (344)
T ss_pred cCC
Confidence 665
No 275
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.74 E-value=6.6e-05 Score=68.21 Aligned_cols=23 Identities=43% Similarity=0.764 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhcC
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEAG 289 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~ 289 (703)
|.|+||||+|||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999987663
No 276
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.00017 Score=75.56 Aligned_cols=121 Identities=14% Similarity=0.087 Sum_probs=81.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeec------hhHHH-----H-H-----hhhhhhHHHHHHHHHHh---
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG------SEFVE-----M-F-----VGVGASRVRDLFKKAKE--- 321 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~------se~~~-----~-~-----~G~~~~~ir~lF~~A~~--- 321 (703)
.+|..+||+||+|+||..+|.++|...-+.=-.-.| ..+.. - + ..-+.+.+|++.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 457789999999999999999999866321000011 11110 0 0 01234556666554422
Q ss_pred --cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeec
Q 005304 322 --NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 399 (703)
Q Consensus 322 --~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~ 399 (703)
...-|++||++|.+ .....|.||..++. +..++++|..|+.++.+-|.+++ |.. .+.++
T Consensus 85 e~~~~KV~II~~ae~m--------------~~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL--------------NKQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhh--------------CHHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eeecC
Confidence 22469999999998 34578899999985 55678888899999999999999 764 34555
Q ss_pred CC
Q 005304 400 VP 401 (703)
Q Consensus 400 ~P 401 (703)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 54
No 277
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.69 E-value=0.00011 Score=88.34 Aligned_cols=211 Identities=18% Similarity=0.217 Sum_probs=127.8
Q ss_pred ccccccCCCccccccccchHHHHHHHHHHHHhcCch--hhhhccCCCC-c-eEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 005304 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPE--RFTAIGARIP-K-GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (703)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~--~~~~lg~~~p-~-gvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (703)
..+.+++.+....++.|....-..+.+.++..++++ .|...+.... + .++++||||+|||+.+.++|.+.|..++.
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E 387 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVE 387 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceee
Confidence 466777788888888888776665555555443331 1222111111 1 36999999999999999999999999999
Q ss_pred eechhHHHHHh-----hh--hhhHHHHHHH---HHHh-cCC-eEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc
Q 005304 295 ISGSEFVEMFV-----GV--GASRVRDLFK---KAKE-NAP-CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (703)
Q Consensus 295 is~se~~~~~~-----G~--~~~~ir~lF~---~A~~-~aP-~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld 362 (703)
.+.++...... +. +...+...|. .... ... -||++||+|.+.. . ....-..+.++..
T Consensus 388 ~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~-------dRg~v~~l~~l~~--- 456 (871)
T KOG1968|consen 388 KNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-E-------DRGGVSKLSSLCK--- 456 (871)
T ss_pred cCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-h-------hhhhHHHHHHHHH---
Confidence 99886654321 11 1222333330 0000 112 3899999999853 1 1112223444443
Q ss_pred CccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHH
Q 005304 363 GFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLA 441 (703)
Q Consensus 363 ~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~ 441 (703)
....-+|+++|..+......+. |.+.-++|+.|+...+..-+...+....+. .+-.++.+...+ ++||+
T Consensus 457 ----ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR 526 (871)
T KOG1968|consen 457 ----KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIR 526 (871)
T ss_pred ----hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHH
Confidence 2334577788876655543333 444568999999998877776665443322 233366776655 67888
Q ss_pred HHHHHHHHH
Q 005304 442 NLLNEAAIL 450 (703)
Q Consensus 442 ~lv~eAa~~ 450 (703)
++++.-...
T Consensus 527 ~~i~~lq~~ 535 (871)
T KOG1968|consen 527 QIIMQLQFW 535 (871)
T ss_pred HHHHHHhhh
Confidence 877766555
No 278
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.68 E-value=0.00021 Score=73.64 Aligned_cols=40 Identities=28% Similarity=0.507 Sum_probs=31.9
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEeechh
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSE 299 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~se 299 (703)
|.+.+..++++|+||+|||+++..++.+ .+.++++++..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 4555567999999999999999999654 377888887644
No 279
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.68 E-value=0.0002 Score=72.80 Aligned_cols=141 Identities=18% Similarity=0.112 Sum_probs=72.7
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHH----HHHhhh-------------------hhhHHH
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----EMFVGV-------------------GASRVR 313 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~----~~~~G~-------------------~~~~ir 313 (703)
|.....-++++|+||+|||+++..+|.+. +.++++++..... ....+. ....+.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQ 94 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHH
Confidence 34444459999999999999999998654 6788888764211 111110 011112
Q ss_pred HHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccccc-----ccccC
Q 005304 314 DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD-----SALLR 388 (703)
Q Consensus 314 ~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD-----~aLlR 388 (703)
.+..... ..+++|+||-+..+........ .........+..++..|..+....++.||.+.......+ |..-+
T Consensus 95 ~~~~~~~-~~~~lvvIDsi~~l~~~~~~~~-~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g~ 172 (218)
T cd01394 95 ETETFAD-EKVDLVVVDSATALYRLELGDD-DTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGGH 172 (218)
T ss_pred HHHHHHh-cCCcEEEEechHHhhhHHhcCc-cchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCCc
Confidence 2222222 3478999999998853211110 011122223334444444444455677777655332222 22100
Q ss_pred --CCccceeeeecCCC
Q 005304 389 --PGRFDRQVTVDVPD 402 (703)
Q Consensus 389 --pgRfdr~I~i~~Pd 402 (703)
....|.+|.+....
T Consensus 173 ~~~~~~d~~i~l~~~~ 188 (218)
T cd01394 173 TLEHWSKVILRLEKLR 188 (218)
T ss_pred chhcceeEEEEEEEcC
Confidence 11445567777655
No 280
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.66 E-value=0.00029 Score=76.29 Aligned_cols=118 Identities=22% Similarity=0.260 Sum_probs=68.4
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHH----hhh------------hhhHHHHHHHHHH
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF----VGV------------GASRVRDLFKKAK 320 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~----~G~------------~~~~ir~lF~~A~ 320 (703)
|.+..+-++|+||||||||+||-.++.++ +.+++++++.+..+.. .|. .+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 34444568999999999999988775543 7788888775533210 111 1112222222334
Q ss_pred hcCCeEEEEcCcccccccCCC-CC-CCC-ChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005304 321 ENAPCIVFVDEIDAVGRQRGT-GI-GGG-NDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (703)
Q Consensus 321 ~~aP~ILfIDEID~L~~~r~~-~~-~~~-~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (703)
...+.+|+||-+.++.++..- +. +.. .....+.+.+++..+...-...++.+|.+..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 567899999999998753211 10 001 1122234456666666555566777777643
No 281
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.65 E-value=0.00024 Score=68.93 Aligned_cols=26 Identities=35% Similarity=0.594 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.+.-++++|+||+|||+++.-++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 34569999999999999999999766
No 282
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.65 E-value=8.3e-05 Score=74.70 Aligned_cols=124 Identities=17% Similarity=0.198 Sum_probs=61.1
Q ss_pred EEEEcCCCChHHHHHHHH-HH---hcCCCEEEeechhHH-HHHhh---hhhh-------------HHHHHHHHHHhcCCe
Q 005304 267 VLLVGPPGTGKTLLAKAI-AG---EAGVPFFSISGSEFV-EMFVG---VGAS-------------RVRDLFKKAKENAPC 325 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAl-A~---e~~~pfi~is~se~~-~~~~G---~~~~-------------~ir~lF~~A~~~aP~ 325 (703)
.+++|.||+|||+.|-.. .. ..|.+++. +...+. +.+.. .... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999988555 33 34777766 544222 11100 0000 001111111111468
Q ss_pred EEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCC
Q 005304 326 IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPD 402 (703)
Q Consensus 326 ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd 402 (703)
+|+|||++.+.+.|... .......+ +++.+.. ..++-||.+|..+..+|+.+++ +.+.++.+..++
T Consensus 82 liviDEa~~~~~~r~~~----~~~~~~~~-~~l~~hR----h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~~ 147 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWK----GKKVPEII-EFLAQHR----HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKLD 147 (193)
T ss_dssp EEEETTGGGTSB---T-----T----HHH-HGGGGCC----CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE--
T ss_pred EEEEECChhhcCCCccc----cccchHHH-HHHHHhC----cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEeec
Confidence 99999999998877541 11123334 4444332 4567888899999999999987 888877776554
No 283
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.64 E-value=0.00035 Score=72.27 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=47.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEeechhHHHHHh------hh------------------------
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMFV------GV------------------------ 307 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~se~~~~~~------G~------------------------ 307 (703)
.+...-++++||||||||+++..++.. .+.+.++++..+-.+.+. |.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNS 100 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChH
Confidence 333446999999999999998655442 367788887643221110 00
Q ss_pred -hhhHHHHHHHHHHhcCCeEEEEcCccccc
Q 005304 308 -GASRVRDLFKKAKENAPCIVFVDEIDAVG 336 (703)
Q Consensus 308 -~~~~ir~lF~~A~~~aP~ILfIDEID~L~ 336 (703)
....+..+.+......|.+++|||+-.+.
T Consensus 101 ~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 101 EKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 01223334444445578899999998864
No 284
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.64 E-value=0.00017 Score=69.93 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=32.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~ 303 (703)
.+..++|+|+||||||++|+++|..++.+++.. .++...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~--d~~~~~ 41 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT--DHLIEA 41 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHH
Confidence 456899999999999999999999999988854 444443
No 285
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00074 Score=81.12 Aligned_cols=199 Identities=25% Similarity=0.308 Sum_probs=122.4
Q ss_pred ccccccc-hHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEeech
Q 005304 230 FDDVAGV-DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSISGS 298 (703)
Q Consensus 230 f~dv~G~-de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~pfi~is~s 298 (703)
++-++|. ++..+ .+++-|.... .++-+|.|.||+|||.++.-+|... +..++.++..
T Consensus 185 ldPvigr~deeir---Rvi~iL~Rrt---------k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 185 LDPVIGRHDEEIR---RVIEILSRKT---------KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCCccCCchHHHH---HHHHHHhccC---------CCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 5667776 54444 4444433322 2478999999999999999998865 3456666665
Q ss_pred hHH--HHHhhhhhhHHHHHHHHHH-hcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEe
Q 005304 299 EFV--EMFVGVGASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (703)
Q Consensus 299 e~~--~~~~G~~~~~ir~lF~~A~-~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaa 375 (703)
.+. .++.|+.+.+++++.+++. .....||||||++.+...... .......|-|-..+ .+.++-+|+|
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~------~~~~d~~nlLkp~L----~rg~l~~IGa 322 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN------YGAIDAANLLKPLL----ARGGLWCIGA 322 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc------chHHHHHHhhHHHH----hcCCeEEEec
Confidence 444 3567888889999999887 445679999999999654322 11222333332222 2445889988
Q ss_pred cCCcc-----cccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCC------C--ccccHHHHH--HhCCCCcHHHH
Q 005304 376 TNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKF------D--ADVSLDVIA--MRTPGFSGADL 440 (703)
Q Consensus 376 TN~p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l------~--~dvdl~~lA--~~t~G~sgadL 440 (703)
|...+ .=||++-| ||+ .+.++.|+...-..||......... . ..+....++ ..+..+-+.-.
T Consensus 323 tT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~a 399 (898)
T KOG1051|consen 323 TTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCA 399 (898)
T ss_pred ccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhc
Confidence 86322 35899999 997 5678899887766666554433111 1 111112222 12334445555
Q ss_pred HHHHHHHHHHHHH
Q 005304 441 ANLLNEAAILAGR 453 (703)
Q Consensus 441 ~~lv~eAa~~A~r 453 (703)
..++++|+.....
T Consensus 400 idl~dEa~a~~~~ 412 (898)
T KOG1051|consen 400 IDLEDEAAALVKS 412 (898)
T ss_pred ccHHHHHHHHHhh
Confidence 6677777665543
No 286
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.60 E-value=0.0002 Score=75.81 Aligned_cols=113 Identities=26% Similarity=0.459 Sum_probs=67.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC----------CCEEEee-chhHHHHHhhh-------------hhhHHHHHHHHHH
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAG----------VPFFSIS-GSEFVEMFVGV-------------GASRVRDLFKKAK 320 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~----------~pfi~is-~se~~~~~~G~-------------~~~~ir~lF~~A~ 320 (703)
++++|.||+|+|||++.+++++... .++..++ ..++...+.+. ...+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 4899999999999999999998763 2332222 12332211111 1122345666677
Q ss_pred hcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccccccc--------ccCCCcc
Q 005304 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSA--------LLRPGRF 392 (703)
Q Consensus 321 ~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~a--------LlRpgRf 392 (703)
...|.||++||+.. ...+..++..+. .+..+|++|+.++. ... |+..+-|
T Consensus 192 ~~~P~villDE~~~----------------~e~~~~l~~~~~-----~G~~vI~ttH~~~~-~~~~~r~~~~~l~~~~~~ 249 (270)
T TIGR02858 192 SMSPDVIVVDEIGR----------------EEDVEALLEALH-----AGVSIIATAHGRDV-EDLYKRPVFKELIENEAF 249 (270)
T ss_pred hCCCCEEEEeCCCc----------------HHHHHHHHHHHh-----CCCEEEEEechhHH-HHHHhChHHHHHHhcCce
Confidence 78999999999621 122344444432 35678888886433 222 3334567
Q ss_pred ceeeeec
Q 005304 393 DRQVTVD 399 (703)
Q Consensus 393 dr~I~i~ 399 (703)
++.+.+.
T Consensus 250 ~r~i~L~ 256 (270)
T TIGR02858 250 ERYVVLS 256 (270)
T ss_pred EEEEEEe
Confidence 7776664
No 287
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.58 E-value=0.0024 Score=71.37 Aligned_cols=123 Identities=18% Similarity=0.208 Sum_probs=75.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGG 345 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~ 345 (703)
-++|+||.+||||++++.+.....-.+++++..+........ ......+..+.....+.||||||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v---------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV---------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc----------
Confidence 799999999999999988888775556777665554322111 11222233333334479999999997
Q ss_pred CChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHH
Q 005304 346 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 408 (703)
Q Consensus 346 ~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~ 408 (703)
+.+...+..+..... .++++.+++...-....+-.=+||. ..+.+.+-+..+...
T Consensus 107 --~~W~~~lk~l~d~~~-----~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 107 --PDWERALKYLYDRGN-----LDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred --hhHHHHHHHHHcccc-----ceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 346667776665321 1344444443322222333336785 577888888888754
No 288
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.58 E-value=0.00043 Score=74.17 Aligned_cols=160 Identities=21% Similarity=0.369 Sum_probs=94.8
Q ss_pred ccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHH-H--HhcCCCEEEeechhHHH--H--
Q 005304 232 DVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAI-A--GEAGVPFFSISGSEFVE--M-- 303 (703)
Q Consensus 232 dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAl-A--~e~~~pfi~is~se~~~--~-- 303 (703)
.+.|.....+.+.+++.. +-..+ ...|++.||.|+|||.+.... + .+.|-.|+.+....+.. +
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gE---------snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGE---------SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcC---------CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 456666666777777754 21111 237999999999999876544 3 36677777665433221 0
Q ss_pred -----------------HhhhhhhHHHHHHHHHHh-----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhh
Q 005304 304 -----------------FVGVGASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 361 (703)
Q Consensus 304 -----------------~~G~~~~~ir~lF~~A~~-----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~l 361 (703)
..|.....+..++...++ ..+.|.++||||.+++. .++..+..++..-
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h----------~rQtllYnlfDis 165 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH----------SRQTLLYNLFDIS 165 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc----------hhhHHHHHHHHHH
Confidence 112233334444444432 22445567799998532 2334444444432
Q ss_pred cCccCCCCeEEEEecCCcc---cccccccCCCcccee-eeecCC-ChhhHHHHHHHHh
Q 005304 362 DGFEGNTGIIVIAATNRAD---ILDSALLRPGRFDRQ-VTVDVP-DIRGRTEILKVHG 414 (703)
Q Consensus 362 d~~~~~~~ViVIaaTN~p~---~LD~aLlRpgRfdr~-I~i~~P-d~~eR~~IL~~~l 414 (703)
. ..+..+.||+.|.+.+ .|.....+ ||... |++.++ +..+-..+++..+
T Consensus 166 q--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 166 Q--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred h--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 2 2355789999998765 45566777 99874 665544 5667777777665
No 289
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.58 E-value=0.0003 Score=71.16 Aligned_cols=105 Identities=27% Similarity=0.422 Sum_probs=60.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh-----cCCCE-------------EEeechhHHH----HHhhhhhhHHHHHHHHHHhc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGE-----AGVPF-------------FSISGSEFVE----MFVGVGASRVRDLFKKAKEN 322 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e-----~~~pf-------------i~is~se~~~----~~~G~~~~~ir~lF~~A~~~ 322 (703)
+-++|.||+|+|||++.|.++.. .|.++ ..++..+-.. .+ .....++..+++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~-~~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYF-YAELRRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChH-HHHHHHHHHHHHhccCC
Confidence 46899999999999999999853 34432 1111111110 11 11224567777776555
Q ss_pred CCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccccc
Q 005304 323 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (703)
Q Consensus 323 aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 383 (703)
.|.++++||.-.-. +..........++..+.. .+..+|.+|+.++.+.
T Consensus 105 ~p~llllDEp~~gl---------D~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~~~ 152 (199)
T cd03283 105 EPVLFLLDEIFKGT---------NSRERQAASAAVLKFLKN----KNTIGIISTHDLELAD 152 (199)
T ss_pred CCeEEEEecccCCC---------CHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHHHH
Confidence 88999999974321 122233334445555531 2456777888766543
No 290
>PRK08118 topology modulation protein; Reviewed
Probab=97.54 E-value=0.00013 Score=71.67 Aligned_cols=33 Identities=24% Similarity=0.600 Sum_probs=30.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeech
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s 298 (703)
-|+++||||+||||+|+.|+..++.|++.++.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 489999999999999999999999999988753
No 291
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.54 E-value=0.00049 Score=78.15 Aligned_cols=78 Identities=22% Similarity=0.355 Sum_probs=54.4
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHHh------hh--------hhhHHHHHHHHHHhc
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV--------GASRVRDLFKKAKEN 322 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~~------G~--------~~~~ir~lF~~A~~~ 322 (703)
|.....-++|+|+||+|||+|+..+|... +.+++|++..+-.+... |. ....+..+.+.+.+.
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 34444568999999999999999997654 56888998765443211 11 112345566666777
Q ss_pred CCeEEEEcCcccccc
Q 005304 323 APCIVFVDEIDAVGR 337 (703)
Q Consensus 323 aP~ILfIDEID~L~~ 337 (703)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999999853
No 292
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.54 E-value=9.7e-05 Score=84.63 Aligned_cols=63 Identities=22% Similarity=0.461 Sum_probs=45.0
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-CCCEEEeec
Q 005304 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISG 297 (703)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-~~pfi~is~ 297 (703)
-|+|+.|++++++++.+.+..... .++ ...+-++|.||||+|||+||++||..+ ..|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~-----gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ-----GLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH-----hcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 588999999999987776632110 111 122478999999999999999999866 346666544
No 293
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.52 E-value=8e-05 Score=76.98 Aligned_cols=22 Identities=45% Similarity=0.709 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
-|-|.||+|||||||.+.+|+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3889999999999999999983
No 294
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.52 E-value=0.0014 Score=71.41 Aligned_cols=162 Identities=18% Similarity=0.243 Sum_probs=93.0
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH------H
Q 005304 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE------M 303 (703)
Q Consensus 230 f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~------~ 303 (703)
-..+.+.+.+...|..++- +.. -..|..+.|||-.|||||.+.|.+-+..+.|.+.++|-+... .
T Consensus 5 ~~~v~~Re~qi~~L~~Llg---~~~------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLG---NNS------CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEK 75 (438)
T ss_pred ccCccchHHHHHHHHHHhC---CCC------cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHH
Confidence 3456677777776665552 111 145778899999999999999999999999999999866542 1
Q ss_pred Hh---------h----hhhhHHH---HHHHH--HHhc--CCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcC
Q 005304 304 FV---------G----VGASRVR---DLFKK--AKEN--APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 363 (703)
Q Consensus 304 ~~---------G----~~~~~ir---~lF~~--A~~~--aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~ 363 (703)
.. | .....+. .+|.+ +..+ ..-.|++|.+|.+- +.....++.|+..-+-
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr-----------D~~a~ll~~l~~L~el 144 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR-----------DMDAILLQCLFRLYEL 144 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh-----------ccchHHHHHHHHHHHH
Confidence 10 0 1112222 23333 2122 24578899999993 1122234444332221
Q ss_pred ccCCCCeEEEEecCCcccccccccCCCccce-eeeecCCChhhHHHHHHHHh
Q 005304 364 FEGNTGIIVIAATNRADILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHG 414 (703)
Q Consensus 364 ~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr-~I~i~~Pd~~eR~~IL~~~l 414 (703)
.+ ...+.+|.....++. .-+.+-|-++- .++||.|+.++...|+..--
T Consensus 145 ~~-~~~i~iils~~~~e~--~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 145 LN-EPTIVIILSAPSCEK--QYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred hC-CCceEEEEeccccHH--HhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 12 223333332222211 11222234443 67999999999999987543
No 295
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.50 E-value=0.00046 Score=74.83 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=66.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEeechhHHHH-H---hhh------------hhhHHHHHHHHHHh
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM-F---VGV------------GASRVRDLFKKAKE 321 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~se~~~~-~---~G~------------~~~~ir~lF~~A~~ 321 (703)
.+..+-+.++||||+|||+||-.++.+ .+.++++++..+-.+. + .|. .+..+..+-...+.
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s 131 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRS 131 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhc
Confidence 334446889999999999999987654 3778888887542221 0 111 11112222222345
Q ss_pred cCCeEEEEcCcccccccCCC-CCCCCC--hHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005304 322 NAPCIVFVDEIDAVGRQRGT-GIGGGN--DEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (703)
Q Consensus 322 ~aP~ILfIDEID~L~~~r~~-~~~~~~--~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (703)
..+.+|+||-+.++.+.... +..+.. ....+.+.+.+..|.......++.+|.+..
T Consensus 132 ~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 132 GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred cCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 67899999999998753211 111111 112234455555555554556667776543
No 296
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.50 E-value=7.9e-05 Score=68.21 Aligned_cols=30 Identities=43% Similarity=0.904 Sum_probs=26.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEee
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (703)
|+|.||||+||||+|+.+|..++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999988776543
No 297
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.00033 Score=77.31 Aligned_cols=111 Identities=19% Similarity=0.372 Sum_probs=63.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc----C-CCEEEeechhHH-------HH---Hhhh------hhhHHHHHHHHHH
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA----G-VPFFSISGSEFV-------EM---FVGV------GASRVRDLFKKAK 320 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~----~-~pfi~is~se~~-------~~---~~G~------~~~~ir~lF~~A~ 320 (703)
.....++|+||+|+||||++..+|..+ | ..+..+++..+. .. ..|. ....+...+...
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l- 213 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL- 213 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-
Confidence 334579999999999999999998753 3 345555554431 11 1121 111222333332
Q ss_pred hcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccC-CCCeEEEEecCCccccccccc
Q 005304 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRADILDSALL 387 (703)
Q Consensus 321 ~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~-~~~ViVIaaTN~p~~LD~aLl 387 (703)
...++|+||..... .....+.+.+..+..... ...++|+.+|+..+.++..+.
T Consensus 214 -~~~DlVLIDTaG~~-------------~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 214 -RNKHMVLIDTIGMS-------------QRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred -cCCCEEEEcCCCCC-------------cccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 34478999987443 112234444555544332 245788888888877765543
No 298
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.48 E-value=0.00041 Score=72.83 Aligned_cols=76 Identities=26% Similarity=0.422 Sum_probs=49.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHH------hcCCCEEEeechhHHHHH-hhhhhhHHHHHHHHHH--------hcCCe
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAG------EAGVPFFSISGSEFVEMF-VGVGASRVRDLFKKAK--------ENAPC 325 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~------e~~~pfi~is~se~~~~~-~G~~~~~ir~lF~~A~--------~~aP~ 325 (703)
.+...++||.||.|.||+.||+.+-. .+.-+|+.++|..+...- +..--..++..|.-|+ .....
T Consensus 205 ~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 205 IRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred hhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCc
Confidence 34445799999999999999999843 457899999998765210 0000111222232221 12346
Q ss_pred EEEEcCccccc
Q 005304 326 IVFVDEIDAVG 336 (703)
Q Consensus 326 ILfIDEID~L~ 336 (703)
.+|+|||..++
T Consensus 285 mlfldeigelg 295 (531)
T COG4650 285 MLFLDEIGELG 295 (531)
T ss_pred eEehHhhhhcC
Confidence 99999999984
No 299
>PRK05973 replicative DNA helicase; Provisional
Probab=97.46 E-value=0.00079 Score=69.96 Aligned_cols=40 Identities=35% Similarity=0.277 Sum_probs=30.8
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechh
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se 299 (703)
|..+..-++|.|+||+|||+++-.++.+. |.++++++..+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 44444468999999999999998886544 88888888653
No 300
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.44 E-value=0.0031 Score=67.85 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=47.6
Q ss_pred cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccc---------------
Q 005304 322 NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL--------------- 386 (703)
Q Consensus 322 ~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aL--------------- 386 (703)
..+-||||||+|++- .++ +.+++..+.-+-...++++|.+.++. .+..++
T Consensus 171 ~~~iViiIDdLDR~~----------~~~----i~~~l~~ik~~~~~~~i~~Il~~D~~-~l~~ai~~~~~~~~~~~~~~~ 235 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCS----------PEE----IVELLEAIKLLLDFPNIIFILAFDPE-ILEKAIEKNYGEGFDEIDGRE 235 (325)
T ss_pred CceEEEEEcchhcCC----------cHH----HHHHHHHHHHhcCCCCeEEEEEecHH-HHHHHHHhhcCcccccccHHH
Confidence 346799999999982 222 33333333333334778888887642 222211
Q ss_pred -cCCCccceeeeecCCChhhHHHHHHHHhc
Q 005304 387 -LRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (703)
Q Consensus 387 -lRpgRfdr~I~i~~Pd~~eR~~IL~~~l~ 415 (703)
+.. .|+..+.+|.|+..+...++...+.
T Consensus 236 yLeK-iiq~~~~lP~~~~~~~~~~~~~~~~ 264 (325)
T PF07693_consen 236 YLEK-IIQVPFSLPPPSPSDLERYLNELLE 264 (325)
T ss_pred HHHh-hcCeEEEeCCCCHHHHHHHHHHHHH
Confidence 211 4666788899998888888776643
No 301
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.44 E-value=0.00038 Score=85.67 Aligned_cols=135 Identities=32% Similarity=0.395 Sum_probs=91.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH--Hhhh-------hhhHHHH-HHHHHHhcCCeEEEEcCcc
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM--FVGV-------GASRVRD-LFKKAKENAPCIVFVDEID 333 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~--~~G~-------~~~~ir~-lF~~A~~~aP~ILfIDEID 333 (703)
.|++||.|.||+|||+|..|+|++.|-.++.++.++-.+- .+|. ++-+.++ -|-.|.+. ...+++||+.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehhh
Confidence 4589999999999999999999999999999998865431 1221 2222222 23333332 2477899996
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHhhhcC------------ccCCCCeEEEEecCCcc------cccccccCCCcccee
Q 005304 334 AVGRQRGTGIGGGNDEREQTLNQLLTEMDG------------FEGNTGIIVIAATNRAD------ILDSALLRPGRFDRQ 395 (703)
Q Consensus 334 ~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~------------~~~~~~ViVIaaTN~p~------~LD~aLlRpgRfdr~ 395 (703)
-- .+.++..|-.++|. |...+++.|.||-|.-+ .|+..++. ||. +
T Consensus 1622 La--------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-v 1684 (4600)
T COG5271 1622 LA--------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-V 1684 (4600)
T ss_pred hh--------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-e
Confidence 54 23344444333332 34456789999988643 68888888 895 6
Q ss_pred eeecCCChhhHHHHHHHHhcC
Q 005304 396 VTVDVPDIRGRTEILKVHGSN 416 (703)
Q Consensus 396 I~i~~Pd~~eR~~IL~~~l~~ 416 (703)
|.++....++...|.......
T Consensus 1685 V~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1685 VKMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred EEecccccchHHHHHHhhCCc
Confidence 788888888877777766554
No 302
>PF14516 AAA_35: AAA-like domain
Probab=97.42 E-value=0.0079 Score=65.66 Aligned_cols=161 Identities=16% Similarity=0.150 Sum_probs=86.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHH-------HHh-----------h-------------hhhhH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-------MFV-----------G-------------VGASR 311 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~-------~~~-----------G-------------~~~~~ 311 (703)
-+.+.||..+|||++...+...+ |...+++++..+.. .|. + .....
T Consensus 33 ~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~ 112 (331)
T PF14516_consen 33 YIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKIS 112 (331)
T ss_pred EEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhh
Confidence 68999999999999998886544 78888888764321 000 0 01123
Q ss_pred HHHHHHHH---HhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc---CCCCeEEEEecCC-cccccc
Q 005304 312 VRDLFKKA---KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---GNTGIIVIAATNR-ADILDS 384 (703)
Q Consensus 312 ir~lF~~A---~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~---~~~~ViVIaaTN~-p~~LD~ 384 (703)
....|++. ....|-||+|||||.+.... ......+..|-...+.-. .-..+.+|.+... +.....
T Consensus 113 ~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~--------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 113 CTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP--------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred HHHHHHHHHHhcCCCCEEEEEechhhhccCc--------chHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccC
Confidence 33444432 22468899999999995321 111222222222222111 1123333333322 222211
Q ss_pred cccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHH
Q 005304 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGA 438 (703)
Q Consensus 385 aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sga 438 (703)
.-.+|=-+...|.++.-+.++-..+++.|-.. ..... ++.+-..|.|. |.
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~~~-~~~l~~~tgGh-P~ 234 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQEQ-LEQLMDWTGGH-PY 234 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCHHH-HHHHHHHHCCC-HH
Confidence 12343223345666666788888888877433 22222 77788888775 44
No 303
>PRK04296 thymidine kinase; Provisional
Probab=97.42 E-value=0.00043 Score=69.42 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=42.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEeech----hHHH---HHhhhh-----hhHHHHHHHHHH--hcCCeEEE
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS----EFVE---MFVGVG-----ASRVRDLFKKAK--ENAPCIVF 328 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s----e~~~---~~~G~~-----~~~ir~lF~~A~--~~aP~ILf 328 (703)
-.+++||||+|||+++..++.++ +..++.+..+ .... ...|.. .....++++.+. ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998887655 6666655431 1100 011110 112344454443 34567999
Q ss_pred EcCcccc
Q 005304 329 VDEIDAV 335 (703)
Q Consensus 329 IDEID~L 335 (703)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999776
No 304
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.42 E-value=0.00079 Score=76.72 Aligned_cols=62 Identities=24% Similarity=0.266 Sum_probs=39.7
Q ss_pred ccccchHHHHHHHHHHHH--hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEe
Q 005304 232 DVAGVDEAKQDFMEVVEF--LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (703)
Q Consensus 232 dv~G~de~k~~L~e~v~~--l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (703)
.|.|.+.+|..+.-.+-- -+++..- ...+-.-+|||+|.|||||+-+.|.+++-....++..
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~k--hkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tT 513 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGK--HKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTT 513 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCC--ceeccceeEEEecCCCccHHHHHHHHHhcCcceeEec
Confidence 467777777665433321 1222211 1112223799999999999999999999887766654
No 305
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.39 E-value=0.0011 Score=68.00 Aligned_cols=108 Identities=23% Similarity=0.275 Sum_probs=61.4
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEeechhHHHHH--------------hh---------------
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVEMF--------------VG--------------- 306 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~se~~~~~--------------~G--------------- 306 (703)
|.+....+|+.||||||||+++..++.+. |-++++++..+-.+.+ ..
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 45555679999999999999998875433 8899988864322210 00
Q ss_pred ----hhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005304 307 ----VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (703)
Q Consensus 307 ----~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (703)
........+.+..+...+++++||-+..+. ... ........+..+...+. ..++.++.+.+
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~~-----~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LYD-----DPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TSS-----SGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hcC-----CHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 001112333334455677999999999982 211 22334445555655553 33444444444
No 306
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.39 E-value=0.00047 Score=70.34 Aligned_cols=117 Identities=24% Similarity=0.278 Sum_probs=67.9
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---C------CCEEEeechhHH--HHHh------h---------------h
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---G------VPFFSISGSEFV--EMFV------G---------------V 307 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~------~pfi~is~se~~--~~~~------G---------------~ 307 (703)
|.+...-+.|+||||+|||+++..+|... + ..+++++..+-. +.+. + .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 44444568999999999999999997653 3 677888765321 1100 0 0
Q ss_pred hhhHHHHHHHHH----HhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005304 308 GASRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (703)
Q Consensus 308 ~~~~ir~lF~~A----~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (703)
....+...++.. ....+++|+||-|..+....... .....+..+.+.+++..|..+....++.||.+..
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~-~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG-RGMLAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcC-CchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 111222223322 24567899999999885432110 0012234456667767676665556666666553
No 307
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.39 E-value=0.00057 Score=64.23 Aligned_cols=37 Identities=41% Similarity=0.672 Sum_probs=30.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHh
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~ 305 (703)
|+++||||+||||+|+.++...+ ...++...+.....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~ 38 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLA 38 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHc
Confidence 78999999999999999999998 55577776665443
No 308
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.38 E-value=0.0033 Score=70.98 Aligned_cols=39 Identities=28% Similarity=0.433 Sum_probs=31.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhH
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~ 300 (703)
..|..++++|++|+|||+++..+|..+ |..+..+++..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 457789999999999999999998765 566777766543
No 309
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.37 E-value=0.00077 Score=69.17 Aligned_cols=117 Identities=24% Similarity=0.267 Sum_probs=67.2
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEeechhHH--HHHh------h---------------h
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEFV--EMFV------G---------------V 307 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~se~~--~~~~------G---------------~ 307 (703)
|.+...-+.|+||||+|||+++..++... +..+++++..+-. +.+. + .
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 34445568999999999999999997543 2577888765410 1000 0 0
Q ss_pred hhhHH----HHHHHHHHhc-CCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005304 308 GASRV----RDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (703)
Q Consensus 308 ~~~~i----r~lF~~A~~~-aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (703)
....+ ..+-+...+. .+++|+||-+.++......+ .....+..+.+.+++..|..+....++.||.+..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDG-RGELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 00111 2222223344 78999999999875321110 0012345556667777666655556667776643
No 310
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.37 E-value=0.0016 Score=67.60 Aligned_cols=40 Identities=33% Similarity=0.461 Sum_probs=31.3
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEeechh
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSE 299 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~se 299 (703)
|.+....+|++||||+|||+++..++.+ .|-+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 4555567999999999999999876543 477888887654
No 311
>PRK13949 shikimate kinase; Provisional
Probab=97.37 E-value=0.0011 Score=65.26 Aligned_cols=31 Identities=45% Similarity=0.732 Sum_probs=29.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEee
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (703)
.|+|+|+||+|||++++.+|+.++.+|+..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5999999999999999999999999988765
No 312
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.35 E-value=0.00059 Score=75.35 Aligned_cols=71 Identities=27% Similarity=0.380 Sum_probs=43.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhcC-----CCEEEeechhH-------HHHHh---------hhhhhHHH---HHHHHHHh-
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEAG-----VPFFSISGSEF-------VEMFV---------GVGASRVR---DLFKKAKE- 321 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~-----~pfi~is~se~-------~~~~~---------G~~~~~ir---~lF~~A~~- 321 (703)
.+|+||||+|||+|++.|++... +.++.+-..+. ..... .....+++ ..++.|+.
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999988663 33233322222 11111 11222232 33444432
Q ss_pred ---cCCeEEEEcCcccccc
Q 005304 322 ---NAPCIVFVDEIDAVGR 337 (703)
Q Consensus 322 ---~aP~ILfIDEID~L~~ 337 (703)
...++||||||+.+..
T Consensus 252 ~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 252 VEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHcCCCEEEEEEChHHHHH
Confidence 4568999999999865
No 313
>PRK10536 hypothetical protein; Provisional
Probab=97.35 E-value=0.00084 Score=70.35 Aligned_cols=45 Identities=22% Similarity=0.420 Sum_probs=31.4
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005304 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e 287 (703)
.+.-+.+.......+...+ .+.+ -+++.||+|||||+||.++|.+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al---~~~~-----------lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAI---ESKQ-----------LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHH---hcCC-----------eEEEECCCCCCHHHHHHHHHHH
Confidence 3444556666655555544 2221 5999999999999999999884
No 314
>PRK07261 topology modulation protein; Provisional
Probab=97.34 E-value=0.0003 Score=69.35 Aligned_cols=32 Identities=22% Similarity=0.517 Sum_probs=28.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEeech
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~s 298 (703)
|+++|+||+||||||+.++...+.|++..+.-
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 89999999999999999999999998877643
No 315
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.33 E-value=0.0027 Score=64.28 Aligned_cols=186 Identities=11% Similarity=0.102 Sum_probs=87.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHH----hhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccC
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF----VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~----~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r 339 (703)
++-++++|+||+|||++|+.+|.+++.++ +..+++.... .+..+......|+.-+...+. ..+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~--~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~-----~~~~~~~~- 74 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI--VLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSM-----TDENIVKG- 74 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE--EehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCc-----chhHHHHH-
Confidence 44689999999999999999999998765 3444433211 111101111112211111100 00011000
Q ss_pred CCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC-CcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCC
Q 005304 340 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN-RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK 418 (703)
Q Consensus 340 ~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN-~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~ 418 (703)
-.+..+.+...+-...+.+-..+.-+|+-++. .++.++... .+ . ...+.+..++.+..++=+..+.....
T Consensus 75 ------y~~q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~-~~-~-v~~i~l~v~d~e~lr~Rl~~R~~~~~ 145 (197)
T PRK12339 75 ------YLDQARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENR-TN-N-IRAFYLYIRDAELHRSRLADRINYTH 145 (197)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHH-hc-C-eEEEEEEeCCHHHHHHHHHHHhhccc
Confidence 00000111111111111111122234444343 455554322 11 1 23566666666655443433332221
Q ss_pred CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 005304 419 FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVA 473 (703)
Q Consensus 419 l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~~ 473 (703)
.+...+...+. -.++..+-+.....|...+-..|+..+++++++.++.
T Consensus 146 --~~~p~~~~~~~-----~~~ir~i~~~l~~~a~~~~i~~i~~~~~~~~~~~~~~ 193 (197)
T PRK12339 146 --KNSPGKRLAEH-----LPEYRTIMDYSIADARGYNIKVIDTDNYREARNPLLD 193 (197)
T ss_pred --CCCcHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCeecCccHHHHHHHHHH
Confidence 11112333332 2356666666667778888899999999999988754
No 316
>PRK14532 adenylate kinase; Provisional
Probab=97.33 E-value=0.00057 Score=67.85 Aligned_cols=36 Identities=31% Similarity=0.573 Sum_probs=29.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~ 303 (703)
.++|.||||+||||+|+.+|...+.++ ++..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHHH
Confidence 489999999999999999999998665 455555544
No 317
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.30 E-value=0.0017 Score=68.12 Aligned_cols=25 Identities=40% Similarity=0.543 Sum_probs=22.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGV 290 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~ 290 (703)
-++|.||+|+|||+|++.+++....
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccc
Confidence 5999999999999999999987754
No 318
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.0019 Score=71.79 Aligned_cols=131 Identities=15% Similarity=0.188 Sum_probs=72.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEeechhHHH-------HH---hh------hhhhHHHHHHHHH
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSEFVE-------MF---VG------VGASRVRDLFKKA 319 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~-------~~pfi~is~se~~~-------~~---~G------~~~~~ir~lF~~A 319 (703)
.|+.++|+||+|+||||.+..+|..+ +..+..+++..+.. .| .| .....+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 36689999999999999999998754 34555555443321 11 11 1222333333333
Q ss_pred HhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCC-CCeEEEEecCCcccccccccCCCc--cceee
Q 005304 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN-TGIIVIAATNRADILDSALLRPGR--FDRQV 396 (703)
Q Consensus 320 ~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~-~~ViVIaaTN~p~~LD~aLlRpgR--fdr~I 396 (703)
....+|+||+..... .+. ..+.++...++..... ..++|+.+|.....+...+.+-.. ++ .+
T Consensus 253 --~~~DlVLIDTaGr~~---------~~~---~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~-~~ 317 (388)
T PRK12723 253 --KDFDLVLVDTIGKSP---------KDF---MKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK-TV 317 (388)
T ss_pred --CCCCEEEEcCCCCCc---------cCH---HHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC-EE
Confidence 334799999987651 111 1244444444433322 457888888777777654433111 22 45
Q ss_pred eecCCChhhHHH
Q 005304 397 TVDVPDIRGRTE 408 (703)
Q Consensus 397 ~i~~Pd~~eR~~ 408 (703)
-+...|...+.-
T Consensus 318 I~TKlDet~~~G 329 (388)
T PRK12723 318 IFTKLDETTCVG 329 (388)
T ss_pred EEEeccCCCcch
Confidence 566666655443
No 319
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.27 E-value=0.002 Score=65.96 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=58.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHH-----hcCCCEEE--------------eechhHHHHHhhhhhhHHHHHHH-HHHhcC
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAG-----EAGVPFFS--------------ISGSEFVEMFVGVGASRVRDLFK-KAKENA 323 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~-----e~~~pfi~--------------is~se~~~~~~G~~~~~ir~lF~-~A~~~a 323 (703)
++.++|+||.|+|||++.|.++. ..|.++.. +...+-...........++.+-. .+....
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 35799999999999999999973 33443221 11111011111111122222211 122356
Q ss_pred CeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccc
Q 005304 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL 386 (703)
Q Consensus 324 P~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aL 386 (703)
|.+++|||+..-. ...+....+..++..+-. ....+..+|.+|+..+......
T Consensus 109 ~slvllDE~~~gt---------d~~~~~~~~~ail~~l~~-~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 109 RSLVLIDEFGKGT---------DTEDGAGLLIATIEHLLK-RGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CcEEEeccccCCC---------CHHHHHHHHHHHHHHHHh-cCCCCcEEEEEcChHHHHHhhh
Confidence 8999999985531 112333444445555421 1112346777888877655544
No 320
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.26 E-value=0.00024 Score=74.81 Aligned_cols=101 Identities=21% Similarity=0.313 Sum_probs=63.4
Q ss_pred cCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---EEEee-chh
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSIS-GSE 299 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p---fi~is-~se 299 (703)
.....+++++.-.....+++.+++...-. ..+++++.||+|+|||++++++..+.... ++.+. ..+
T Consensus 97 ~~~~~sle~l~~~~~~~~~~~~~l~~~v~----------~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E 166 (270)
T PF00437_consen 97 SSKPFSLEDLGESGSIPEEIAEFLRSAVR----------GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPE 166 (270)
T ss_dssp TSS--CHCCCCHTHHCHHHHHHHHHHCHH----------TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-
T ss_pred ccccccHhhccCchhhHHHHHHHHhhccc----------cceEEEEECCCccccchHHHHHhhhccccccceEEeccccc
Confidence 44567899998777777767666655311 12379999999999999999999877433 33332 111
Q ss_pred HHHH------Hh-hhhhhHHHHHHHHHHhcCCeEEEEcCccc
Q 005304 300 FVEM------FV-GVGASRVRDLFKKAKENAPCIVFVDEIDA 334 (703)
Q Consensus 300 ~~~~------~~-G~~~~~ir~lF~~A~~~aP~ILfIDEID~ 334 (703)
+.-. +. ........+++..+....|++|+|+||..
T Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 167 LRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 1100 00 12334567788888889999999999954
No 321
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.26 E-value=0.0019 Score=58.65 Aligned_cols=23 Identities=48% Similarity=0.533 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
+++++||+|+|||+.+-.++.+.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999998887655
No 322
>PRK06762 hypothetical protein; Provisional
Probab=97.23 E-value=0.0012 Score=64.15 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=34.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~ 304 (703)
|+-++|+|+||+||||+|+.++..++..++.++...+...+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l 42 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM 42 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh
Confidence 45689999999999999999999987677778877766543
No 323
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.21 E-value=0.0018 Score=68.05 Aligned_cols=39 Identities=31% Similarity=0.339 Sum_probs=30.5
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEeech
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s 298 (703)
|.....-++|.||||+|||+++..+|... +.++++++..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 44444568999999999999999886653 7788888764
No 324
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.21 E-value=0.0021 Score=66.22 Aligned_cols=39 Identities=28% Similarity=0.379 Sum_probs=31.2
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEeech
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s 298 (703)
|..+..-++|.|+||+|||+++..++... +.+++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 55555579999999999999998886543 8899888853
No 325
>PRK13948 shikimate kinase; Provisional
Probab=97.21 E-value=0.0012 Score=65.94 Aligned_cols=43 Identities=26% Similarity=0.355 Sum_probs=34.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhh
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 306 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G 306 (703)
+.|..|+|.|.+|+|||++++.+|..++.+|+..+ .+.+...|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 34578999999999999999999999999998554 44444333
No 326
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.20 E-value=0.0019 Score=60.46 Aligned_cols=52 Identities=25% Similarity=0.356 Sum_probs=40.4
Q ss_pred cccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005304 231 DDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.+|.|++-+++.+.+.+.. +.++. -+.|.-+-|+|+||||||++++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4799999999988887764 44432 2334456689999999999999999975
No 327
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.20 E-value=0.0054 Score=75.08 Aligned_cols=154 Identities=18% Similarity=0.246 Sum_probs=84.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechh-------HHHHH---h-----hh---h------------hhHHHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE-------FVEMF---V-----GV---G------------ASRVRDL 315 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se-------~~~~~---~-----G~---~------------~~~ir~l 315 (703)
-++++||+|.|||+++...+...+ ++..++... |...+ . +. . ...+..+
T Consensus 34 ~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (903)
T PRK04841 34 LVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQL 112 (903)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHH
Confidence 599999999999999999887776 666665531 11110 0 00 0 0112233
Q ss_pred HHHHHh-cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccc-cccCCCccc
Q 005304 316 FKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS-ALLRPGRFD 393 (703)
Q Consensus 316 F~~A~~-~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~-aLlRpgRfd 393 (703)
+..... ..|.+|+|||+|.+- +....+.+..|+..+ ..++.+|.++.....+.- .+... +
T Consensus 113 ~~~l~~~~~~~~lvlDD~h~~~----------~~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~---~ 174 (903)
T PRK04841 113 FIELADWHQPLYLVIDDYHLIT----------NPEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVR---D 174 (903)
T ss_pred HHHHhcCCCCEEEEEeCcCcCC----------ChHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhc---C
Confidence 333332 578999999999982 233444555665532 233444445543211211 11111 1
Q ss_pred eeeeec----CCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHH
Q 005304 394 RQVTVD----VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLA 441 (703)
Q Consensus 394 r~I~i~----~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~ 441 (703)
..+.+. .-+.++-.+++...+... + +..+...+...|.|. +.-+.
T Consensus 175 ~~~~l~~~~l~f~~~e~~~ll~~~~~~~-~-~~~~~~~l~~~t~Gw-p~~l~ 223 (903)
T PRK04841 175 QLLEIGSQQLAFDHQEAQQFFDQRLSSP-I-EAAESSRLCDDVEGW-ATALQ 223 (903)
T ss_pred cceecCHHhCCCCHHHHHHHHHhccCCC-C-CHHHHHHHHHHhCCh-HHHHH
Confidence 234455 557788888887654432 2 233466788888875 44343
No 328
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.14 E-value=0.00093 Score=66.51 Aligned_cols=34 Identities=32% Similarity=0.691 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
.|+|.||||+||||+|+.||+. .++..++..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHh
Confidence 4899999999999999999999 555666655444
No 329
>PRK09354 recA recombinase A; Provisional
Probab=97.13 E-value=0.0019 Score=70.66 Aligned_cols=115 Identities=23% Similarity=0.252 Sum_probs=63.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEeechhHHHH-H---hhh------------hhhHHHHHHHHHHh
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM-F---VGV------------GASRVRDLFKKAKE 321 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~se~~~~-~---~G~------------~~~~ir~lF~~A~~ 321 (703)
.+..+-++|+||||||||+|+-.++.+ .|...++++..+-.+. + .|. .+..+..+-...+.
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s 136 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRS 136 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 333446889999999999999877543 3778888887553221 0 011 11111111122345
Q ss_pred cCCeEEEEcCcccccccCC-CCCCCC--ChHHHHHHHHHHhhhcCccCCCCeEEEEe
Q 005304 322 NAPCIVFVDEIDAVGRQRG-TGIGGG--NDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (703)
Q Consensus 322 ~aP~ILfIDEID~L~~~r~-~~~~~~--~~e~~~~l~~LL~~ld~~~~~~~ViVIaa 375 (703)
..+.+|+||=+-++.+... .+..+. .......+.+.|..+-..-...++.+|.+
T Consensus 137 ~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~t 193 (349)
T PRK09354 137 GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFI 193 (349)
T ss_pred CCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 6789999999999865211 111011 11222344454444444444556666665
No 330
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.13 E-value=0.00041 Score=74.60 Aligned_cols=69 Identities=29% Similarity=0.372 Sum_probs=46.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEeec-hhHH-------HHHhhhhhhHHHHHHHHHHhcCCeEEEEcC
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISG-SEFV-------EMFVGVGASRVRDLFKKAKENAPCIVFVDE 331 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~-se~~-------~~~~G~~~~~ir~lF~~A~~~aP~ILfIDE 331 (703)
++++++||+|+|||++++++++.. +..++.+.- .++. ............++++.+....|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 489999999999999999998875 223333311 1111 000111222567888888889999999999
Q ss_pred cc
Q 005304 332 ID 333 (703)
Q Consensus 332 ID 333 (703)
+-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 83
No 331
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.13 E-value=0.0013 Score=64.28 Aligned_cols=105 Identities=20% Similarity=0.239 Sum_probs=61.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC--CEEEeechhH--------HHHHhhh-----hhhHHHHHHHHHHhcCCeEEE
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEF--------VEMFVGV-----GASRVRDLFKKAKENAPCIVF 328 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~--pfi~is~se~--------~~~~~G~-----~~~~ir~lF~~A~~~aP~ILf 328 (703)
..-+.|.||+|+|||+|.+.+++.... --+.+++.+. ....++. +-.+.+-.+..|--..|.+++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ill 105 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLI 105 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEE
Confidence 346899999999999999999986521 1122222111 1111111 112344456666678899999
Q ss_pred EcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005304 329 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (703)
Q Consensus 329 IDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (703)
+||-..- -+....+.+.+++.++. .+ +..+|.+|+..+.+
T Consensus 106 lDEP~~~----------LD~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~~ 145 (163)
T cd03216 106 LDEPTAA----------LTPAEVERLFKVIRRLR---AQ-GVAVIFISHRLDEV 145 (163)
T ss_pred EECCCcC----------CCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 9997542 23445556666666553 12 34566667765543
No 332
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.11 E-value=0.00084 Score=63.92 Aligned_cols=39 Identities=33% Similarity=0.691 Sum_probs=31.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 306 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G 306 (703)
+|+|+|+||+|||++|+.+|..++.+++.. ..+.....+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~--d~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDL--DELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEc--hHHHHHHcC
Confidence 389999999999999999999999988754 455444333
No 333
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.11 E-value=0.001 Score=65.61 Aligned_cols=27 Identities=44% Similarity=0.882 Sum_probs=22.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCE
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPF 292 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~---~~pf 292 (703)
.++|+|+||+||||+++.+...+ ++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 38999999999999999998877 5554
No 334
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.09 E-value=0.0045 Score=63.33 Aligned_cols=109 Identities=24% Similarity=0.292 Sum_probs=61.9
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEeechhHHHHHh------h--------h-------h-------
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMFV------G--------V-------G------- 308 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~se~~~~~~------G--------~-------~------- 308 (703)
|.+...-+++.|+||+|||+++..++.+ .+.++++++..+-.+.+. | . .
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 4444557899999999999999888754 377888887754332110 0 0 0
Q ss_pred hhHHH-HHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005304 309 ASRVR-DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (703)
Q Consensus 309 ~~~ir-~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (703)
...+. .+.....+..++.++||-+..+-.. .....+....+..++..+. ..++.++.+++
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~-----~~~~~~~r~~l~~l~~~lk----~~~~tvll~s~ 152 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLLETL-----FDDDAERRTELFRFYSSLR----ETGVTTILTSE 152 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHHhhh-----cCCHHHHHHHHHHHHHHHH----hCCCEEEEEEc
Confidence 00111 1122234456788999998877211 1122334455666766664 23445555554
No 335
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.07 E-value=0.002 Score=72.14 Aligned_cols=134 Identities=27% Similarity=0.404 Sum_probs=68.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhhHHHH-----HHHHHH---hcCCeEEEEcCcccccc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRD-----LFKKAK---ENAPCIVFVDEIDAVGR 337 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~~ir~-----lF~~A~---~~aP~ILfIDEID~L~~ 337 (703)
+|||.|.|||-|+-|.|-+-.-+-+-++ .|+.. +.-.|.+++-+|+ .+-+-- -....|++|||+|.+-.
T Consensus 366 NVLLLGDPgtAKSQlLKFvEkvsPIaVY-TSGKG--SSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre 442 (729)
T KOG0481|consen 366 NVLLLGDPGTAKSQLLKFVEKVSPIAVY-TSGKG--SSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRE 442 (729)
T ss_pred eEEEecCCchhHHHHHHHHHhcCceEEE-ecCCC--cccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCc
Confidence 7999999999999999998665543333 22210 0112222222221 110000 01235999999999821
Q ss_pred cCCCCCCCCChHHHHHHHHHHhh----h--cCcc--CCCCeEEEEecCCcc-----------cc--cccccCCCccceee
Q 005304 338 QRGTGIGGGNDEREQTLNQLLTE----M--DGFE--GNTGIIVIAATNRAD-----------IL--DSALLRPGRFDRQV 396 (703)
Q Consensus 338 ~r~~~~~~~~~e~~~~l~~LL~~----l--d~~~--~~~~ViVIaaTN~p~-----------~L--D~aLlRpgRfdr~I 396 (703)
+....+.+-.++ + .|+. -|...-|+||+|.+. .+ -+.+++ |||..+
T Consensus 443 -----------~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIF 509 (729)
T KOG0481|consen 443 -----------DDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIF 509 (729)
T ss_pred -----------hhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhh--hccEEE
Confidence 111111111111 0 1111 134566888888531 23 367888 999877
Q ss_pred eecCCChhhHH-----HHHHHHhc
Q 005304 397 TVDVPDIRGRT-----EILKVHGS 415 (703)
Q Consensus 397 ~i~~Pd~~eR~-----~IL~~~l~ 415 (703)
-+.---..+|- .++..|..
T Consensus 510 IVKD~h~~~~D~~lAkHVI~vH~~ 533 (729)
T KOG0481|consen 510 IVKDEHDEERDITLAKHVINVHVS 533 (729)
T ss_pred EEeccCcchhhhHHHHHhhhhhcc
Confidence 66544333343 34555554
No 336
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.07 E-value=0.0007 Score=67.49 Aligned_cols=68 Identities=28% Similarity=0.403 Sum_probs=43.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCEEEeech-hHHH---H----------HhhhhhhHHHHHHHHHHhcCCeEEE
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGS-EFVE---M----------FVGVGASRVRDLFKKAKENAPCIVF 328 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~s-e~~~---~----------~~G~~~~~ir~lF~~A~~~aP~ILf 328 (703)
..++|.||+|+|||++++++++... ...+.+... ++.- . ..+.......++++.+....|.+++
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 3799999999999999999998652 122222110 1100 0 0011123456777777788899999
Q ss_pred EcCc
Q 005304 329 VDEI 332 (703)
Q Consensus 329 IDEI 332 (703)
++|+
T Consensus 106 igEi 109 (186)
T cd01130 106 VGEV 109 (186)
T ss_pred EEcc
Confidence 9998
No 337
>PRK13947 shikimate kinase; Provisional
Probab=97.06 E-value=0.00054 Score=66.78 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEee
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (703)
+|+|.|+||+|||++++.+|..++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999997654
No 338
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.05 E-value=0.0036 Score=63.44 Aligned_cols=125 Identities=26% Similarity=0.399 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhhHHHHHHHHH
Q 005304 240 KQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKA 319 (703)
Q Consensus 240 k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~~ir~lF~~A 319 (703)
+..+...|....+| |.+...-++|.|+.|+|||++.+.|+.+ ++.-+.... ...+.. ...
T Consensus 34 ~~wl~~~Var~~~p------g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~------~~kd~~----~~l 93 (198)
T PF05272_consen 34 RKWLVGAVARAYEP------GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF------DDKDFL----EQL 93 (198)
T ss_pred HHHHHHHHHHHhCC------CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccC------CCcHHH----HHH
Confidence 45555666655555 4555667899999999999999999666 211111000 001111 122
Q ss_pred HhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhh-cCccC---------CCCeEEEEecCCccccc-ccccC
Q 005304 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM-DGFEG---------NTGIIVIAATNRADILD-SALLR 388 (703)
Q Consensus 320 ~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~l-d~~~~---------~~~ViVIaaTN~p~~LD-~aLlR 388 (703)
..+ -|+.|||++.+.++ ....+..+++.- +.+.. ....++|+|||..+.|. +.=-|
T Consensus 94 ~~~--~iveldEl~~~~k~-----------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR 160 (198)
T PF05272_consen 94 QGK--WIVELDELDGLSKK-----------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR 160 (198)
T ss_pred HHh--HheeHHHHhhcchh-----------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe
Confidence 222 38899999998411 123455555432 22111 22478999999987554 33445
Q ss_pred CCccceeeeecC
Q 005304 389 PGRFDRQVTVDV 400 (703)
Q Consensus 389 pgRfdr~I~i~~ 400 (703)
|| ..|++..
T Consensus 161 --Rf-~~v~v~~ 169 (198)
T PF05272_consen 161 --RF-WPVEVSK 169 (198)
T ss_pred --EE-EEEEEcC
Confidence 77 3555544
No 339
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.04 E-value=0.001 Score=67.15 Aligned_cols=97 Identities=25% Similarity=0.371 Sum_probs=52.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHH----HhhhhhhHHHHHHHHHH---------hcCCeEEEE
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM----FVGVGASRVRDLFKKAK---------ENAPCIVFV 329 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~----~~G~~~~~ir~lF~~A~---------~~aP~ILfI 329 (703)
-.+|.||||||||++++.++..+ +..++.+..+.-... -.+.....+..++.... .....+|+|
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliV 99 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIV 99 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEE
Confidence 58889999999999999986533 677777765432211 11112222222222111 122379999
Q ss_pred cCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 330 DEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
||+-.+. ...+..++..... .+.++++++=.+.
T Consensus 100 DEasmv~--------------~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 100 DEASMVD--------------SRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp SSGGG-B--------------HHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred ecccccC--------------HHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 9998872 2345566665543 2446777776554
No 340
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.04 E-value=0.0033 Score=64.46 Aligned_cols=39 Identities=31% Similarity=0.415 Sum_probs=29.7
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEeech
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGS 298 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s 298 (703)
|......++++||||+|||+++..++.+ .+.+.++++..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 4455567999999999999999987643 36677777753
No 341
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.04 E-value=0.0025 Score=69.06 Aligned_cols=115 Identities=23% Similarity=0.242 Sum_probs=66.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEeechh-H-HHHH------hhhh---------------
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE-F-VEMF------VGVG--------------- 308 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~se-~-~~~~------~G~~--------------- 308 (703)
+....-+.|+||||+|||.|+..+|-.+ +..++|++..+ | .+.+ .+..
T Consensus 93 i~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 93 IESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred CcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCC
Confidence 4444568899999999999998876422 45778887654 1 1100 0110
Q ss_pred h----hHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 005304 309 A----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (703)
Q Consensus 309 ~----~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaT 376 (703)
. ..+..+-.......+.+|+||-|-++.+..-.+ .+...++++.+.+++..|..+....++.||.+.
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~-~g~~~~r~~~l~~~~~~L~~la~~~~vavvitN 243 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG-RGELSERQQKLAQMLSRLNKISEEFNVAVFVTN 243 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC-ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 0 111222222234568899999999886532221 112334455577777766666555666666653
No 342
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.03 E-value=0.0014 Score=64.56 Aligned_cols=32 Identities=28% Similarity=0.606 Sum_probs=29.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEee
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (703)
++++|.|++|+||||+.+++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998664
No 343
>PRK13946 shikimate kinase; Provisional
Probab=97.03 E-value=0.0017 Score=64.55 Aligned_cols=34 Identities=32% Similarity=0.576 Sum_probs=30.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEee
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (703)
.++.|+|.|+||+|||++++.+|..+|.||+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3467999999999999999999999999988665
No 344
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.02 E-value=0.0024 Score=69.13 Aligned_cols=117 Identities=22% Similarity=0.215 Sum_probs=66.8
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEeechhH--HHHH------hhhhh-------------
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF--VEMF------VGVGA------------- 309 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~se~--~~~~------~G~~~------------- 309 (703)
|++...-++|+||||+|||+++-.+|..+ +..+++++..+- .+.+ .|...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 44555568899999999999999998653 347888887551 1100 01100
Q ss_pred ------hHHHHHHHHHHh-cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005304 310 ------SRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (703)
Q Consensus 310 ------~~ir~lF~~A~~-~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (703)
..+..+...... ..+.+|+||=|-++......+ .+...++++.+.+++..|..+....++.||.+..
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVG-RGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 001112222223 456789999999885432111 1122234555666666665555556677776654
No 345
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.02 E-value=0.0051 Score=60.35 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e 287 (703)
--++|+||+|||||+|.|++|.-
T Consensus 30 e~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhc
Confidence 35999999999999999999983
No 346
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.00 E-value=0.0041 Score=64.83 Aligned_cols=36 Identities=25% Similarity=0.494 Sum_probs=29.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHH
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~ 302 (703)
|+|+|+||+|||++|+.++..+ +.+++.++...+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 7899999999999999999876 56778877655543
No 347
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.00 E-value=0.0048 Score=63.26 Aligned_cols=70 Identities=29% Similarity=0.425 Sum_probs=45.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc--------CCCEEEeec-hhHHHHHhhh-------------hhhHHHHHHHHHHhcC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISG-SEFVEMFVGV-------------GASRVRDLFKKAKENA 323 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~--------~~pfi~is~-se~~~~~~G~-------------~~~~ir~lF~~A~~~a 323 (703)
+.|+.||||||||++.|-+|.-. ...+..++- +++.....|. ..-.-..+....+.++
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~ 218 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMS 218 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcC
Confidence 68999999999999999998854 233444432 2332211111 1112234555667899
Q ss_pred CeEEEEcCcccc
Q 005304 324 PCIVFVDEIDAV 335 (703)
Q Consensus 324 P~ILfIDEID~L 335 (703)
|.|+++|||..-
T Consensus 219 PEViIvDEIGt~ 230 (308)
T COG3854 219 PEVIIVDEIGTE 230 (308)
T ss_pred CcEEEEeccccH
Confidence 999999999553
No 348
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.99 E-value=0.001 Score=67.17 Aligned_cols=67 Identities=28% Similarity=0.440 Sum_probs=42.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC----CEEEeec-hhHHH---------HHhhhhhhHHHHHHHHHHhcCCeEEEEcC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGV----PFFSISG-SEFVE---------MFVGVGASRVRDLFKKAKENAPCIVFVDE 331 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~----pfi~is~-se~~~---------~~~G~~~~~ir~lF~~A~~~aP~ILfIDE 331 (703)
-+++.||+|+||||+++++++.... .++.+.. .++.. .-++.....+.+.++.+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3789999999999999999887642 2222211 11110 00122223345566666677899999999
Q ss_pred c
Q 005304 332 I 332 (703)
Q Consensus 332 I 332 (703)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 349
>PRK03839 putative kinase; Provisional
Probab=96.99 E-value=0.0006 Score=67.28 Aligned_cols=31 Identities=29% Similarity=0.607 Sum_probs=27.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEee
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (703)
-|+|.|+||+||||+++.+|..++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999987643
No 350
>PRK14974 cell division protein FtsY; Provisional
Probab=96.98 E-value=0.0049 Score=67.37 Aligned_cols=73 Identities=27% Similarity=0.359 Sum_probs=45.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHH-------HH---hhh----------hhhHHHHHHHHH
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-------MF---VGV----------GASRVRDLFKKA 319 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~-------~~---~G~----------~~~~ir~lF~~A 319 (703)
.|+-++|+||||+||||++..+|..+ +..+..+++.-+.. .+ .|. ....+.+..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 36789999999999999888887654 55666666543211 11 111 012233444455
Q ss_pred HhcCCeEEEEcCcccc
Q 005304 320 KENAPCIVFVDEIDAV 335 (703)
Q Consensus 320 ~~~aP~ILfIDEID~L 335 (703)
+.....+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 5455578999988665
No 351
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.98 E-value=0.0033 Score=62.13 Aligned_cols=95 Identities=16% Similarity=0.248 Sum_probs=54.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH-Hhh----------------hhhhHHHHHHHHHHhcCCeEEE
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVG----------------VGASRVRDLFKKAKENAPCIVF 328 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~-~~G----------------~~~~~ir~lF~~A~~~aP~ILf 328 (703)
-+|+.|+||+|||++|..++.+.+.+++++......+. ... +....+..+++.. ...+.+++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 48999999999999999999998888888775432211 000 0011233333321 12356888
Q ss_pred EcCcccccccCCCCCCCCChHHHHHHHHHHhhhcC
Q 005304 329 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 363 (703)
Q Consensus 329 IDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~ 363 (703)
||-+..+..+.-.. .........+..++..+..
T Consensus 82 ID~Lt~~~~n~l~~--~~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 82 VDCLTTWVTNLLFE--EGEEAIAAEIDALLAALQQ 114 (170)
T ss_pred ehhHHHHHHHHhcc--cchHHHHHHHHHHHHHHHc
Confidence 99998885433210 0002233445556666553
No 352
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.97 E-value=0.0034 Score=67.68 Aligned_cols=117 Identities=23% Similarity=0.252 Sum_probs=65.5
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEeechh-HH-HH---H---hhhhh-------------
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE-FV-EM---F---VGVGA------------- 309 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~se-~~-~~---~---~G~~~------------- 309 (703)
|.....-++++||||+|||+++-.+|..+ +...++++..+ |. +. . .|...
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~ 170 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAY 170 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecC
Confidence 34445568899999999999999997663 33788888655 11 10 0 01100
Q ss_pred ---h---HHHHHHHHHHhc--CCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005304 310 ---S---RVRDLFKKAKEN--APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (703)
Q Consensus 310 ---~---~ir~lF~~A~~~--aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (703)
. .+.++.+..... .+.+|+||-|-++....-.+. +...++++.+++++..+..+....++.|+.+..
T Consensus 171 ~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~~-~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnq 245 (310)
T TIGR02236 171 NSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGR-GALAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 245 (310)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcCc-hhHHHHHHHHHHHHHHHHHHHHHhCcEEEEece
Confidence 0 112222333333 367999999888754321111 112234455666666565555556666666543
No 353
>PRK00625 shikimate kinase; Provisional
Probab=96.96 E-value=0.00072 Score=66.99 Aligned_cols=31 Identities=39% Similarity=0.650 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEee
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (703)
.|+|+|.||+|||++++.+|..++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998765
No 354
>PLN02674 adenylate kinase
Probab=96.96 E-value=0.0022 Score=66.96 Aligned_cols=38 Identities=26% Similarity=0.520 Sum_probs=30.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~ 303 (703)
+..++|.||||+||+|+++.+|...+++ .++..++...
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~--his~GdllR~ 68 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLC--HLATGDMLRA 68 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCc--EEchhHHHHH
Confidence 4569999999999999999999999865 4555666543
No 355
>PRK04328 hypothetical protein; Provisional
Probab=96.95 E-value=0.0075 Score=63.13 Aligned_cols=40 Identities=33% Similarity=0.453 Sum_probs=30.2
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEeechh
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSE 299 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~se 299 (703)
|.+....+|++||||||||+|+..++.+ .|-+.++++..+
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 4444557999999999999999877543 377888887643
No 356
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.95 E-value=0.0038 Score=65.73 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=30.1
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEeech
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGS 298 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s 298 (703)
|.+...-++++||||||||+++-.+|.+ .|-++++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 4444556999999999999999888653 36788888754
No 357
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0063 Score=67.08 Aligned_cols=150 Identities=20% Similarity=0.319 Sum_probs=87.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc--CCCEEEeechhHHHHH------hh--------hhhhHHHHHHHHHHhcCCeEEE
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA--GVPFFSISGSEFVEMF------VG--------VGASRVRDLFKKAKENAPCIVF 328 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~--~~pfi~is~se~~~~~------~G--------~~~~~ir~lF~~A~~~aP~ILf 328 (703)
.-+||-|.||.|||||.-.+|..+ ..+++|+++.+-.... .+ ..+-++.++++.+....|.+++
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvV 173 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVV 173 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEE
Confidence 347888999999999988776654 3389999998765432 11 1234567888888889999999
Q ss_pred EcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEe-cCCcccccccccCCCccceeeeecCCChhhHH
Q 005304 329 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA-TNRADILDSALLRPGRFDRQVTVDVPDIRGRT 407 (703)
Q Consensus 329 IDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaa-TN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~ 407 (703)
||-|..+....-++..++-...++.-++|...-. ..+..+++++= |..-..--|.++- +-.|-+++|.- |.....
T Consensus 174 IDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK--~~~i~~fiVGHVTKeG~IAGPrvLE-HmVDtVlyFEG-d~~~~~ 249 (456)
T COG1066 174 IDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK--TKNIAIFIVGHVTKEGAIAGPRVLE-HMVDTVLYFEG-DRHSRY 249 (456)
T ss_pred EeccceeecccccCCCCcHHHHHHHHHHHHHHHH--HcCCeEEEEEEEcccccccCchhee-eeeeEEEEEec-cCCCce
Confidence 9999999766544333333333344444433221 11222344432 2222223344433 24555555543 334455
Q ss_pred HHHHHHhcCCC
Q 005304 408 EILKVHGSNKK 418 (703)
Q Consensus 408 ~IL~~~l~~~~ 418 (703)
+||+.+-..+.
T Consensus 250 RiLR~vKNRFG 260 (456)
T COG1066 250 RILRSVKNRFG 260 (456)
T ss_pred eeeehhcccCC
Confidence 66665544443
No 358
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.94 E-value=0.0049 Score=61.42 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=53.1
Q ss_pred EEEEcCCCChHHHHHHHHHH-----hcCCCEE--------------EeechhHHHHHhhhhhhHHHHHHHHHH-hcCCeE
Q 005304 267 VLLVGPPGTGKTLLAKAIAG-----EAGVPFF--------------SISGSEFVEMFVGVGASRVRDLFKKAK-ENAPCI 326 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~-----e~~~pfi--------------~is~se~~~~~~G~~~~~ir~lF~~A~-~~aP~I 326 (703)
++|+||.|.|||++.|.++- ..|.++. .+...+....-.+.....++.+-..+. ...|.+
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999973 3343321 122222221111111122222222221 136899
Q ss_pred EEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcc
Q 005304 327 VFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (703)
Q Consensus 327 LfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 380 (703)
+++||+..-. ...+.......++..+.. ..+..+|.+|+..+
T Consensus 82 lllDEp~~g~---------d~~~~~~~~~~~l~~l~~---~~~~~iii~TH~~~ 123 (185)
T smart00534 82 VLLDELGRGT---------STYDGVAIAAAVLEYLLE---KIGALTLFATHYHE 123 (185)
T ss_pred EEEecCCCCC---------CHHHHHHHHHHHHHHHHh---cCCCeEEEEecHHH
Confidence 9999985531 122233444555554432 12345677787765
No 359
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.92 E-value=0.0032 Score=68.92 Aligned_cols=115 Identities=23% Similarity=0.197 Sum_probs=66.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEeechh------HHHHH--hhhh---------------
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE------FVEMF--VGVG--------------- 308 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~se------~~~~~--~G~~--------------- 308 (703)
+....-..|+||||||||.|+..+|-.. +..++|++... +.+.. .|..
T Consensus 123 i~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~ 202 (344)
T PLN03187 123 IETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYT 202 (344)
T ss_pred CCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCC
Confidence 3444457899999999999999886432 24678887643 11100 0110
Q ss_pred hh----HHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 005304 309 AS----RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (703)
Q Consensus 309 ~~----~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaT 376 (703)
.. .+..+-.......+.+|+||-|-++.+....+. +...++++.+.+++..|..+....++.||.+.
T Consensus 203 ~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~r-g~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 203 YEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGR-GELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCc-cchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 01 112222223345688999999998865422221 12334556677777766655555566666653
No 360
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.91 E-value=0.0009 Score=65.90 Aligned_cols=38 Identities=24% Similarity=0.490 Sum_probs=32.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
+-++|.|+||+|||++|++++...+.+++.++...+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~ 40 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE 40 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH
Confidence 36899999999999999999999998888777665554
No 361
>PRK10867 signal recognition particle protein; Provisional
Probab=96.91 E-value=0.022 Score=64.34 Aligned_cols=74 Identities=23% Similarity=0.337 Sum_probs=47.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEeechhHHH----HH------hh----------hhhhHHHHHHH
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVE----MF------VG----------VGASRVRDLFK 317 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~se~~~----~~------~G----------~~~~~ir~lF~ 317 (703)
..|.-++++||+|+||||++..+|..+ |..+..+++..+.. .+ .+ ......++..+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 457789999999999999777776633 67777787764321 11 00 11222334555
Q ss_pred HHHhcCCeEEEEcCcccc
Q 005304 318 KAKENAPCIVFVDEIDAV 335 (703)
Q Consensus 318 ~A~~~aP~ILfIDEID~L 335 (703)
.++.....+|+||=.-.+
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 566666678888876544
No 362
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.91 E-value=0.0019 Score=70.77 Aligned_cols=68 Identities=21% Similarity=0.394 Sum_probs=44.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC----CEEEee-chhHHH---------HHhhhhhhHHHHHHHHHHhcCCeEEEEcC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGV----PFFSIS-GSEFVE---------MFVGVGASRVRDLFKKAKENAPCIVFVDE 331 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~----pfi~is-~se~~~---------~~~G~~~~~ir~lF~~A~~~aP~ILfIDE 331 (703)
.++++||+|+||||+.+++.+...- .++.+. ..++.. .-+|.......+.++.+....|.+|++||
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vgE 203 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIGE 203 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEeC
Confidence 5899999999999999999886642 233321 112110 01122223355667777778999999999
Q ss_pred cc
Q 005304 332 ID 333 (703)
Q Consensus 332 ID 333 (703)
+.
T Consensus 204 ir 205 (343)
T TIGR01420 204 MR 205 (343)
T ss_pred CC
Confidence 83
No 363
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.014 Score=65.44 Aligned_cols=115 Identities=16% Similarity=0.264 Sum_probs=60.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEeechhHHH-------HH---hhh---hhhHHHHHHHHHHhcCCe
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVE-------MF---VGV---GASRVRDLFKKAKENAPC 325 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~se~~~-------~~---~G~---~~~~ir~lF~~A~~~aP~ 325 (703)
.+.-+++.||+|+||||++..+|... |..+..+++..+.. .| .+. ....+.++.+.+......
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 34568999999999999999998754 44566666554332 11 111 112233444444444557
Q ss_pred EEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccc
Q 005304 326 IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL 386 (703)
Q Consensus 326 ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aL 386 (703)
+|+||=.... ..+...-..+..++...........++|+.+|...+.+....
T Consensus 302 ~VLIDTaGr~---------~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~ 353 (432)
T PRK12724 302 LILIDTAGYS---------HRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL 353 (432)
T ss_pred EEEEeCCCCC---------ccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH
Confidence 8888753221 011122222223332222112234577777777766655444
No 364
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.90 E-value=0.0027 Score=59.78 Aligned_cols=30 Identities=33% Similarity=0.757 Sum_probs=28.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEee
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (703)
+.+.|+||+|||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998765
No 365
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.90 E-value=0.0021 Score=74.52 Aligned_cols=54 Identities=31% Similarity=0.370 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcc
Q 005304 312 VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (703)
Q Consensus 312 ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 380 (703)
-|-.|....-++|.++||||.-.- -+++.+..+.+++.+ .=.++.||..++++.
T Consensus 522 QRlafARilL~kP~~v~LDEATsA----------LDe~~e~~l~q~l~~-----~lp~~tvISV~Hr~t 575 (604)
T COG4178 522 QRLAFARLLLHKPKWVFLDEATSA----------LDEETEDRLYQLLKE-----ELPDATVISVGHRPT 575 (604)
T ss_pred HHHHHHHHHHcCCCEEEEecchhc----------cChHHHHHHHHHHHh-----hCCCCEEEEeccchh
Confidence 345677777789999999997543 244556666666652 114577888887754
No 366
>PTZ00202 tuzin; Provisional
Probab=96.90 E-value=0.025 Score=63.39 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=50.8
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechh
Q 005304 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (703)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se 299 (703)
-...+++|.++...+|.+++.... ...|+-+.|.||+|+|||++++.++...+.+.++++...
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d---------~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg 321 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLD---------TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG 321 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccC---------CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC
Confidence 356789999999999988886422 234557899999999999999999999998888777653
No 367
>PLN02200 adenylate kinase family protein
Probab=96.90 E-value=0.0012 Score=68.47 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=34.1
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~ 303 (703)
+.+.|.-+++.||||+|||++|+.+|.+.|++ .++++++...
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 44566779999999999999999999999865 5677776643
No 368
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.89 E-value=0.0012 Score=71.67 Aligned_cols=69 Identities=28% Similarity=0.401 Sum_probs=45.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEee-chhHH---H---HHhhhhhhHHHHHHHHHHhcCCeEEEEcCc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSIS-GSEFV---E---MFVGVGASRVRDLFKKAKENAPCIVFVDEI 332 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is-~se~~---~---~~~G~~~~~ir~lF~~A~~~aP~ILfIDEI 332 (703)
++++++|++|+|||+++++++.+. ...++.+. ..++. . .+.....-...++++.+....|..|++.|+
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEi 228 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEV 228 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 479999999999999999998763 12233221 11111 0 001111234678888888999999999998
Q ss_pred c
Q 005304 333 D 333 (703)
Q Consensus 333 D 333 (703)
-
T Consensus 229 R 229 (319)
T PRK13894 229 R 229 (319)
T ss_pred C
Confidence 3
No 369
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.88 E-value=0.044 Score=59.34 Aligned_cols=130 Identities=17% Similarity=0.203 Sum_probs=67.3
Q ss_pred HHHHHHHHHh--c-CCeEEEEcCcccccccCCCC---CCCCChHHHHHHHHHHhhhcCccC-CCCeEE--EEecCC---c
Q 005304 312 VRDLFKKAKE--N-APCIVFVDEIDAVGRQRGTG---IGGGNDEREQTLNQLLTEMDGFEG-NTGIIV--IAATNR---A 379 (703)
Q Consensus 312 ir~lF~~A~~--~-aP~ILfIDEID~L~~~r~~~---~~~~~~e~~~~l~~LL~~ld~~~~-~~~ViV--IaaTN~---p 379 (703)
+..++++.+. . .|.++-||++.++.....-. ...-+...-.....|+..+.+-.. ..+.+| +++|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 3444554433 2 47888899999997652111 011122233444455544332222 334443 555532 2
Q ss_pred c--cccccccCCC------ccc-------------eeeeecCCChhhHHHHHHHHhcCCCCCcccc----HHHHHHhCCC
Q 005304 380 D--ILDSALLRPG------RFD-------------RQVTVDVPDIRGRTEILKVHGSNKKFDADVS----LDVIAMRTPG 434 (703)
Q Consensus 380 ~--~LD~aLlRpg------Rfd-------------r~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvd----l~~lA~~t~G 434 (703)
. .++.++.... -|. ..|+++..+.+|-..+++.+....-+....+ .+.+...+ |
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s-~ 300 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSS-N 300 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhc-C
Confidence 2 4555554311 121 1578888899999999998876655443111 23333333 4
Q ss_pred CcHHHHHH
Q 005304 435 FSGADLAN 442 (703)
Q Consensus 435 ~sgadL~~ 442 (703)
.+++++..
T Consensus 301 GNp~el~k 308 (309)
T PF10236_consen 301 GNPRELEK 308 (309)
T ss_pred CCHHHhcc
Confidence 56777653
No 370
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.88 E-value=0.0085 Score=59.54 Aligned_cols=115 Identities=18% Similarity=0.182 Sum_probs=63.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC-------------CEEEeechhHHHHHh-h-----h------hhhHHHHHHHHH
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGV-------------PFFSISGSEFVEMFV-G-----V------GASRVRDLFKKA 319 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~-------------pfi~is~se~~~~~~-G-----~------~~~~ir~lF~~A 319 (703)
.-+.|.||+|+|||||.+++....|- ++.++.-.++.+.+- + . +-.+.+-.+..+
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~lara 101 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASE 101 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHH
Confidence 35889999999999999999743321 233332222222211 0 0 112334445556
Q ss_pred HhcC--CeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeee
Q 005304 320 KENA--PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVT 397 (703)
Q Consensus 320 ~~~a--P~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~ 397 (703)
.... |.++++||-..- -+....+.+.+++..+. . .+..||.+|+.++.+ + ..|+.+.
T Consensus 102 l~~~~~p~llLlDEPt~~----------LD~~~~~~l~~~l~~~~---~-~g~tvIivSH~~~~~-----~--~~d~i~~ 160 (176)
T cd03238 102 LFSEPPGTLFILDEPSTG----------LHQQDINQLLEVIKGLI---D-LGNTVILIEHNLDVL-----S--SADWIID 160 (176)
T ss_pred HhhCCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHHH-----H--hCCEEEE
Confidence 5677 899999997543 23334444455554442 1 244666677765532 2 3566666
Q ss_pred ecC
Q 005304 398 VDV 400 (703)
Q Consensus 398 i~~ 400 (703)
+..
T Consensus 161 l~~ 163 (176)
T cd03238 161 FGP 163 (176)
T ss_pred ECC
Confidence 643
No 371
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.88 E-value=0.0051 Score=73.62 Aligned_cols=116 Identities=22% Similarity=0.260 Sum_probs=66.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHH---hcCCCEEEeechhHHH-HH---hhh------------hhhHHHHHHHHHHh
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGSEFVE-MF---VGV------------GASRVRDLFKKAKE 321 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~---e~~~pfi~is~se~~~-~~---~G~------------~~~~ir~lF~~A~~ 321 (703)
.....-++|+||||||||+|+..++. ..|-++++++..+-.. .+ .|. .+..+..+-...+.
T Consensus 57 ip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~ 136 (790)
T PRK09519 57 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRS 136 (790)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhc
Confidence 34445689999999999999966544 3467788887654222 00 111 11111111122344
Q ss_pred cCCeEEEEcCcccccccCC-CCCCCCC--hHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 005304 322 NAPCIVFVDEIDAVGRQRG-TGIGGGN--DEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (703)
Q Consensus 322 ~aP~ILfIDEID~L~~~r~-~~~~~~~--~e~~~~l~~LL~~ld~~~~~~~ViVIaaT 376 (703)
..+.+|+||-+.++.+... .+..+.. ....+.++++|..|..+-...++.+|.+-
T Consensus 137 ~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 137 GALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred CCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 5789999999999975221 1111111 12334446666666666556677777654
No 372
>PTZ00035 Rad51 protein; Provisional
Probab=96.88 E-value=0.0043 Score=67.90 Aligned_cols=115 Identities=22% Similarity=0.250 Sum_probs=65.5
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEeechhH------HHHH--hhhh--------------
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF------VEMF--VGVG-------------- 308 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~se~------~~~~--~G~~-------------- 308 (703)
|+....-+.|+||||+|||+++..++... +..+++++...- .... .+..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 34444568899999999999999987543 345667775431 1110 0000
Q ss_pred -----hhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEe
Q 005304 309 -----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (703)
Q Consensus 309 -----~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaa 375 (703)
...+..+........+.+|+||-|-++.+..-.+. +...++++.+.+++..|..+....++.|+.+
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGR-GELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCc-ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 01111122222345678999999999764321111 1223455667777776665555556666654
No 373
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.87 E-value=0.0013 Score=71.42 Aligned_cols=68 Identities=22% Similarity=0.306 Sum_probs=45.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEee-chhHHH------HHhhhhhhHHHHHHHHHHhcCCeEEEEcCc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSIS-GSEFVE------MFVGVGASRVRDLFKKAKENAPCIVFVDEI 332 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is-~se~~~------~~~G~~~~~ir~lF~~A~~~aP~ILfIDEI 332 (703)
+++|++|++|+|||+++++++... +..++.+. ..++.- .+.....-...++++.+....|..|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 489999999999999999998865 22333322 112110 001111224667888888899999999998
No 374
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.85 E-value=0.0041 Score=59.88 Aligned_cols=36 Identities=28% Similarity=0.627 Sum_probs=30.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHH
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~ 302 (703)
++|+|+||+|||++|+.++..+ +.+.+.++...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 7899999999999999999987 77778887766654
No 375
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.85 E-value=0.00084 Score=64.33 Aligned_cols=34 Identities=41% Similarity=0.827 Sum_probs=29.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
++|++|-||||||+++..+|...+.+++.+ ++++
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~i--sd~v 42 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEI--SDLV 42 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEeh--hhHH
Confidence 699999999999999999999999888765 4544
No 376
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.83 E-value=0.0028 Score=64.05 Aligned_cols=130 Identities=26% Similarity=0.368 Sum_probs=67.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHH-------HHH---hhh----------hhhHHHHHHHHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV-------EMF---VGV----------GASRVRDLFKKAK 320 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~-------~~~---~G~----------~~~~ir~lF~~A~ 320 (703)
|+-++|.||+|+||||.+--+|..+ +..+-.+++..+. ..| .+. .....++.++.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 6679999999999999988887654 5555555554332 111 111 1223445566655
Q ss_pred hcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccccccccc--CCCccceeeee
Q 005304 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALL--RPGRFDRQVTV 398 (703)
Q Consensus 321 ~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLl--RpgRfdr~I~i 398 (703)
...-.+|+||-.... ..+.+....+..++..+ ....-.+|+.++...+.++.... +...++ .+-+
T Consensus 81 ~~~~D~vlIDT~Gr~---------~~d~~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~-~lIl 147 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS---------PRDEELLEELKKLLEAL---NPDEVHLVLSATMGQEDLEQALAFYEAFGID-GLIL 147 (196)
T ss_dssp HTTSSEEEEEE-SSS---------STHHHHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTC-EEEE
T ss_pred hcCCCEEEEecCCcc---------hhhHHHHHHHHHHhhhc---CCccceEEEecccChHHHHHHHHHhhcccCc-eEEE
Confidence 544568998875332 11222233344444444 23334566666666666653322 111223 3345
Q ss_pred cCCChhhH
Q 005304 399 DVPDIRGR 406 (703)
Q Consensus 399 ~~Pd~~eR 406 (703)
...|...+
T Consensus 148 TKlDet~~ 155 (196)
T PF00448_consen 148 TKLDETAR 155 (196)
T ss_dssp ESTTSSST
T ss_pred EeecCCCC
Confidence 55555443
No 377
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.83 E-value=0.001 Score=65.59 Aligned_cols=35 Identities=26% Similarity=0.532 Sum_probs=28.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~ 303 (703)
|+++||||+||||+|+.+|...+++ .++.++++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHHHH
Confidence 7899999999999999999999854 5555555543
No 378
>PRK13695 putative NTPase; Provisional
Probab=96.82 E-value=0.0078 Score=59.14 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-++|.|++|+|||++++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999987764
No 379
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.82 E-value=0.0038 Score=71.62 Aligned_cols=77 Identities=21% Similarity=0.253 Sum_probs=53.7
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHHh------hh----------------------h
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV----------------------G 308 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~~------G~----------------------~ 308 (703)
|......+|+.||||+|||+|+-.++.+. |-+.++++..+-.+.+. |. .
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 33444569999999999999998887644 67888888765443221 10 0
Q ss_pred hhHHHHHHHHHHhcCCeEEEEcCccccc
Q 005304 309 ASRVRDLFKKAKENAPCIVFVDEIDAVG 336 (703)
Q Consensus 309 ~~~ir~lF~~A~~~aP~ILfIDEID~L~ 336 (703)
...+..+.+......|.+|+||-+..+.
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 2334555666667788999999999874
No 380
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.81 E-value=0.0022 Score=70.00 Aligned_cols=70 Identities=23% Similarity=0.363 Sum_probs=46.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC--CEEEee-chhHHH--------HH-----hhhhhhHHHHHHHHHHhcCCeEE
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSIS-GSEFVE--------MF-----VGVGASRVRDLFKKAKENAPCIV 327 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~--pfi~is-~se~~~--------~~-----~G~~~~~ir~lF~~A~~~aP~IL 327 (703)
.++++++|++|+|||++++++.....- .++.+- ..++.- .+ .+...-...++++.+....|..|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 458999999999999999999886632 222221 111110 00 11222345778888889999999
Q ss_pred EEcCcc
Q 005304 328 FVDEID 333 (703)
Q Consensus 328 fIDEID 333 (703)
++.|+-
T Consensus 240 ivGEiR 245 (332)
T PRK13900 240 IVGELR 245 (332)
T ss_pred EEEecC
Confidence 999984
No 381
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.79 E-value=0.0068 Score=57.94 Aligned_cols=100 Identities=26% Similarity=0.311 Sum_probs=55.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC--CEEEeech---hHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCccccccc
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGS---EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQ 338 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~--pfi~is~s---e~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~ 338 (703)
...+.|.||+|+|||+|++++++.... --+.++.. .++.. ...+ .+-+-.+..|-...|.++++||-..=.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~-lS~G-~~~rv~laral~~~p~illlDEP~~~L-- 101 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ-LSGG-EKMRLALAKLLLENPNLLLLDEPTNHL-- 101 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-CCHH-HHHHHHHHHHHhcCCCEEEEeCCccCC--
Confidence 346889999999999999999986521 00111110 00000 1111 123334555566788999999975431
Q ss_pred CCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005304 339 RGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (703)
Q Consensus 339 r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (703)
+......+.+++.++. ..+|.+|+.++.+
T Consensus 102 --------D~~~~~~l~~~l~~~~-------~til~~th~~~~~ 130 (144)
T cd03221 102 --------DLESIEALEEALKEYP-------GTVILVSHDRYFL 130 (144)
T ss_pred --------CHHHHHHHHHHHHHcC-------CEEEEEECCHHHH
Confidence 2333444455555431 2566677765543
No 382
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.78 E-value=0.0071 Score=61.44 Aligned_cols=126 Identities=23% Similarity=0.341 Sum_probs=78.0
Q ss_pred cCchhhhhccCCCCce--EEEEcCCCChHHHHHHHHHHhc---CCCEEEeech----hHHHH-----------H------
Q 005304 251 KKPERFTAIGARIPKG--VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS----EFVEM-----------F------ 304 (703)
Q Consensus 251 ~~p~~~~~lg~~~p~g--vLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s----e~~~~-----------~------ 304 (703)
.+.+.-+++|.-+|.| +++.|+.|||||.|.+.++.-. +....+++.. +|... +
T Consensus 13 gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~ 92 (235)
T COG2874 13 GNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLL 92 (235)
T ss_pred CcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeE
Confidence 3444556677666654 7889999999999999997633 5556655532 11110 0
Q ss_pred ------------hhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEE
Q 005304 305 ------------VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (703)
Q Consensus 305 ------------~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViV 372 (703)
.....+.+..+.+..+.....||+||-+..+... + ..+.+++++..+..+....++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~---------~-~~~~vl~fm~~~r~l~d~gKvIi 162 (235)
T COG2874 93 FFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATY---------D-SEDAVLNFMTFLRKLSDLGKVII 162 (235)
T ss_pred EEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhc---------c-cHHHHHHHHHHHHHHHhCCCEEE
Confidence 0111223344444445555679999999988532 1 23456667777777776666666
Q ss_pred EEecCCcccccccccC
Q 005304 373 IAATNRADILDSALLR 388 (703)
Q Consensus 373 IaaTN~p~~LD~aLlR 388 (703)
+ |-+|+.++++.+-
T Consensus 163 l--Tvhp~~l~e~~~~ 176 (235)
T COG2874 163 L--TVHPSALDEDVLT 176 (235)
T ss_pred E--EeChhhcCHHHHH
Confidence 5 4567888877765
No 383
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.78 E-value=0.0055 Score=63.46 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=26.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---------------CCCEEEeechh
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEA---------------GVPFFSISGSE 299 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~---------------~~pfi~is~se 299 (703)
.+|+||||+|||+|+..+|... +.++++++..+
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed 51 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED 51 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC
Confidence 5899999999999999987531 34678887654
No 384
>PRK06217 hypothetical protein; Validated
Probab=96.77 E-value=0.0012 Score=65.45 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEee
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (703)
.|+|.|+||+||||+|++++..++.|++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999977654
No 385
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.77 E-value=0.004 Score=67.55 Aligned_cols=116 Identities=19% Similarity=0.232 Sum_probs=65.3
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhcC---------CCEEEeechhH------HHHH--hhhh--------------
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSISGSEF------VEMF--VGVG-------------- 308 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~~---------~pfi~is~se~------~~~~--~G~~-------------- 308 (703)
|.....-+.++||||+|||+++..+|..+. ...++++..+- .... .+..
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 344445688999999999999999876321 35678776551 1100 0110
Q ss_pred -hh----HHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 005304 309 -AS----RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (703)
Q Consensus 309 -~~----~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaT 376 (703)
.. .+..+........+.+|+||-|-++......+. +....++..+.+++..|..+....++.||.+.
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~-~~~~~rq~~l~~~~~~L~~la~~~~vavv~tN 243 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGR-GELSARQMHLARFLRSLQRLADEFGVAVVITN 243 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCc-chHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 01 111122222345688999999998854321111 11123345566777777665555566666653
No 386
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.75 E-value=0.007 Score=59.78 Aligned_cols=71 Identities=21% Similarity=0.246 Sum_probs=46.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEeechhH-----HHH---H---------hhhhhhHHHHHHHHHHhcCCeEEEE
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF-----VEM---F---------VGVGASRVRDLFKKAKENAPCIVFV 329 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~-----~~~---~---------~G~~~~~ir~lF~~A~~~aP~ILfI 329 (703)
+|+.|++|+|||++|..++...+.+++++....- .+. + ..+....+.+.++... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 6899999999999999999888888888865432 111 1 0112223334332221 4678999
Q ss_pred cCcccccccC
Q 005304 330 DEIDAVGRQR 339 (703)
Q Consensus 330 DEID~L~~~r 339 (703)
|-+..+..+-
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9998876543
No 387
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.74 E-value=0.01 Score=57.29 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=22.7
Q ss_pred ceEEEEcCCCChHHH-HHHHHHHhcC----CCEEEeec
Q 005304 265 KGVLLVGPPGTGKTL-LAKAIAGEAG----VPFFSISG 297 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~-LArAlA~e~~----~pfi~is~ 297 (703)
+.+++.||+|+|||. ++..+..... .+++.+..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 379999999999999 5555544432 34555554
No 388
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.74 E-value=0.0049 Score=62.16 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=19.5
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAG 286 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~ 286 (703)
-++|+||.|+|||++.+.++.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEEEECCCCCccHHHHHHHHH
Confidence 599999999999999999983
No 389
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.74 E-value=0.0049 Score=66.58 Aligned_cols=34 Identities=32% Similarity=0.652 Sum_probs=30.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEe
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (703)
.++..|+|+|+||+|||++++.+|..+|+||+.+
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 4556899999999999999999999999999943
No 390
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.71 E-value=0.0053 Score=67.29 Aligned_cols=116 Identities=18% Similarity=0.258 Sum_probs=67.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEeechh------HHHHH--hhh---------------h
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE------FVEMF--VGV---------------G 308 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~se------~~~~~--~G~---------------~ 308 (703)
.....-+.++|+||+|||.++..+|..+ +.+++|++..+ +.+.. .+. .
T Consensus 120 ~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~~ 199 (342)
T PLN03186 120 IETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYN 199 (342)
T ss_pred CcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecCC
Confidence 3444458899999999999998887432 23688888765 11110 000 0
Q ss_pred hhHHHHHH----HHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005304 309 ASRVRDLF----KKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (703)
Q Consensus 309 ~~~ir~lF----~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (703)
......++ .......+.+|+||-|-++.+....+. +....+++.+.+++..|..+....++.||.+..
T Consensus 200 ~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~-g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNq 271 (342)
T PLN03186 200 TDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGR-GELSARQMHLGKFLRSLQRLADEFGVAVVITNQ 271 (342)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 01111122 222445688999999999865321111 122344556777777777666566677776543
No 391
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.71 E-value=0.0029 Score=68.36 Aligned_cols=72 Identities=22% Similarity=0.392 Sum_probs=46.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEee-chhHH--H-H----H-----hhhhhhHHHHHHHHHHhcCCeE
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSIS-GSEFV--E-M----F-----VGVGASRVRDLFKKAKENAPCI 326 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~--pfi~is-~se~~--~-~----~-----~G~~~~~ir~lF~~A~~~aP~I 326 (703)
+...++++.||+|+|||++++++++...- ..+.+. ..++. . . . .+...-...+++..+....|.+
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ 221 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDR 221 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCe
Confidence 34458999999999999999999987632 222221 01110 0 0 0 0111234567788888899999
Q ss_pred EEEcCcc
Q 005304 327 VFVDEID 333 (703)
Q Consensus 327 LfIDEID 333 (703)
|++||+-
T Consensus 222 ii~gE~r 228 (308)
T TIGR02788 222 IILGELR 228 (308)
T ss_pred EEEeccC
Confidence 9999984
No 392
>PRK14531 adenylate kinase; Provisional
Probab=96.71 E-value=0.0016 Score=64.62 Aligned_cols=35 Identities=29% Similarity=0.636 Sum_probs=29.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
+-++++||||+|||++++.+|...|++++. +.++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 359999999999999999999999877654 44544
No 393
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.70 E-value=0.0039 Score=65.94 Aligned_cols=94 Identities=20% Similarity=0.288 Sum_probs=56.0
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCEEEee-chhHHH-
Q 005304 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSIS-GSEFVE- 302 (703)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~---~pfi~is-~se~~~- 302 (703)
.+++++.-.++..+.+++++. .+. ..+++.||+|+|||++++++..... ..++.+. ..++.-
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~---~~~----------GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE---KPH----------GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh---cCC----------CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 467777544455554444442 111 1489999999999999999977653 2344432 111110
Q ss_pred -----HHhhhhhhHHHHHHHHHHhcCCeEEEEcCccc
Q 005304 303 -----MFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 334 (703)
Q Consensus 303 -----~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~ 334 (703)
...........+.+..+....|++|+++|+..
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 00011112355667777788999999999944
No 394
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.70 E-value=0.011 Score=67.79 Aligned_cols=40 Identities=30% Similarity=0.365 Sum_probs=31.5
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHh----cCCCEEEeechh
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSISGSE 299 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e----~~~pfi~is~se 299 (703)
|....+.+|++||||||||+||..++.+ .|-+.++++..+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 4555668999999999999999988442 267888888654
No 395
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.017 Score=64.23 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=45.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHH----HH---H---------hhhhhhHHHHHHHHHHh-c
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----EM---F---------VGVGASRVRDLFKKAKE-N 322 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~----~~---~---------~G~~~~~ir~lF~~A~~-~ 322 (703)
.|+-++|.||+|+||||++..+|..+ +..+..+++..+. +. | .......+.+.+..++. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 35789999999999999999998765 4556666654332 11 1 11233445555555543 2
Q ss_pred CCeEEEEcCccc
Q 005304 323 APCIVFVDEIDA 334 (703)
Q Consensus 323 aP~ILfIDEID~ 334 (703)
...+||||-...
T Consensus 320 ~~DvVLIDTaGR 331 (436)
T PRK11889 320 RVDYILIDTAGK 331 (436)
T ss_pred CCCEEEEeCccc
Confidence 346888887644
No 396
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.69 E-value=0.0018 Score=67.06 Aligned_cols=37 Identities=22% Similarity=0.507 Sum_probs=30.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
.|.-++|.||||+||||+|+.+|...+++++.+ .+++
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~--gdll 41 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINM--GNIL 41 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC--ChHH
Confidence 345699999999999999999999999877654 4444
No 397
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.69 E-value=0.0056 Score=61.83 Aligned_cols=22 Identities=50% Similarity=0.821 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~ 288 (703)
++|+|+||+|||++|+-+|.++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999987
No 398
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.68 E-value=0.0015 Score=62.32 Aligned_cols=33 Identities=33% Similarity=0.765 Sum_probs=27.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
++|+|+||+|||++|+.++...+.+++ +...+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCcccc
Confidence 689999999999999999999887655 444443
No 399
>PRK13808 adenylate kinase; Provisional
Probab=96.68 E-value=0.0063 Score=66.24 Aligned_cols=34 Identities=29% Similarity=0.640 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
|+|+||||+|||++++.||...+++.+ +..+++.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~i--s~gdlLR 36 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQL--STGDMLR 36 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee--cccHHHH
Confidence 899999999999999999999987554 4455543
No 400
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.67 E-value=0.0045 Score=61.37 Aligned_cols=73 Identities=27% Similarity=0.359 Sum_probs=41.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc-------------CCCEEEeechhHH----HHH---------------hh-------
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA-------------GVPFFSISGSEFV----EMF---------------VG------- 306 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~-------------~~pfi~is~se~~----~~~---------------~G------- 306 (703)
-++|+||||+|||+++..+|... +.++++++...-. ..+ ..
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 38899999999999999886643 3477888654221 111 00
Q ss_pred ----------hhhhHHHHHHHHHHh-cCCeEEEEcCccccccc
Q 005304 307 ----------VGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQ 338 (703)
Q Consensus 307 ----------~~~~~ir~lF~~A~~-~aP~ILfIDEID~L~~~ 338 (703)
.....+..+.+.+.. ..|.+|+||-+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 001223445555555 56899999999999643
No 401
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.67 E-value=0.0015 Score=64.66 Aligned_cols=35 Identities=37% Similarity=0.743 Sum_probs=28.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~ 303 (703)
|+|+||||+|||++|+.||...+++++ +..+++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l~~~ 36 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDLLRE 36 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHHHHH
Confidence 799999999999999999999887654 45555543
No 402
>PRK04040 adenylate kinase; Provisional
Probab=96.65 E-value=0.011 Score=59.34 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=28.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc--CCCEEEeechhH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA--GVPFFSISGSEF 300 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~--~~pfi~is~se~ 300 (703)
|+-++++|+||+|||++++.++.++ +.+++ +.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~--~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV--NFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE--ecchH
Confidence 5579999999999999999999999 55554 44443
No 403
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.65 E-value=0.0047 Score=59.19 Aligned_cols=35 Identities=34% Similarity=0.603 Sum_probs=28.9
Q ss_pred EEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHh
Q 005304 269 LVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (703)
Q Consensus 269 L~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~ 305 (703)
|.||||+|||++|+.||.+.+. ..++..++.....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHHH
Confidence 6899999999999999999865 5677777776543
No 404
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.63 E-value=0.051 Score=61.22 Aligned_cols=73 Identities=21% Similarity=0.197 Sum_probs=46.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHH-------HH--------hh-h---h-hhHHHHHHHH
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-------MF--------VG-V---G-ASRVRDLFKK 318 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~-------~~--------~G-~---~-~~~ir~lF~~ 318 (703)
..|.-++|+|++|+||||++..+|..+ |..+..+++..+.. .+ .+ . . ....++.++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 346789999999999999999998755 66777777754321 01 00 0 0 1223345566
Q ss_pred HHhcCCeEEEEcCccc
Q 005304 319 AKENAPCIVFVDEIDA 334 (703)
Q Consensus 319 A~~~aP~ILfIDEID~ 334 (703)
++...-.+||||=...
T Consensus 178 ~~~~~~DvViIDTaGr 193 (429)
T TIGR01425 178 FKKENFDIIIVDTSGR 193 (429)
T ss_pred HHhCCCCEEEEECCCC
Confidence 6555557888886543
No 405
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.62 E-value=0.0096 Score=59.23 Aligned_cols=102 Identities=19% Similarity=0.142 Sum_probs=55.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC--CEEEeechhH---HHH-HhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEF---VEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~--pfi~is~se~---~~~-~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r 339 (703)
-+.|.||.|+|||||.+.+++.... --+.+++..+ ... ....+ .+.+-.+..+-...|.++++||-..-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgG-q~qrv~laral~~~p~lllLDEPts~---- 101 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGG-ELQRVAIAAALLRNATFYLFDEPSAY---- 101 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHH-HHHHHHHHHHHhcCCCEEEEECCccc----
Confidence 5889999999999999999986421 1111211100 000 01112 23344455566678999999997543
Q ss_pred CCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccc
Q 005304 340 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (703)
Q Consensus 340 ~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 381 (703)
-+....+.+..++.++. ...+..+|.+|+..+.
T Consensus 102 ------LD~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~ 134 (177)
T cd03222 102 ------LDIEQRLNAARAIRRLS---EEGKKTALVVEHDLAV 134 (177)
T ss_pred ------CCHHHHHHHHHHHHHHH---HcCCCEEEEEECCHHH
Confidence 13333444444444432 1222355666766544
No 406
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.62 E-value=0.0065 Score=59.71 Aligned_cols=102 Identities=25% Similarity=0.410 Sum_probs=57.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC--CEEEeechh--------HHHH--Hh---------------hhhhhHHHHHHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSE--------FVEM--FV---------------GVGASRVRDLFKK 318 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~--pfi~is~se--------~~~~--~~---------------G~~~~~ir~lF~~ 318 (703)
-+.|.||+|+|||+|.+.+++.... --+.+++.+ +... |+ -.+-.+.|-.+..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la~ 109 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLAR 109 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHHHH
Confidence 5899999999999999999986421 011121111 1000 00 0111223445666
Q ss_pred HHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccc
Q 005304 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (703)
Q Consensus 319 A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 381 (703)
|-...|.++++||--.- -+......+.+++..+.. .+..+|.+|+..+.
T Consensus 110 al~~~p~~lllDEPt~~----------LD~~~~~~l~~~l~~~~~----~~~tii~~sh~~~~ 158 (173)
T cd03246 110 ALYGNPRILVLDEPNSH----------LDVEGERALNQAIAALKA----AGATRIVIAHRPET 158 (173)
T ss_pred HHhcCCCEEEEECCccc----------cCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHH
Confidence 66678999999997543 233445555566655431 23456666776543
No 407
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.61 E-value=0.0016 Score=63.10 Aligned_cols=32 Identities=34% Similarity=0.703 Sum_probs=26.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEeechhH
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~ 300 (703)
++|+||||+|||++|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999987665 44443
No 408
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.59 E-value=0.027 Score=58.65 Aligned_cols=131 Identities=16% Similarity=0.256 Sum_probs=72.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC--CEEEeechhHHH---HH-----hhh---------h----hhHHHHHHHHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFVE---MF-----VGV---------G----ASRVRDLFKKAK 320 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~--pfi~is~se~~~---~~-----~G~---------~----~~~ir~lF~~A~ 320 (703)
|-.+++.|++|||||++++.+-....- ..+.+-+..... .| +.. . ...+.+......
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 446999999999999999999765532 222222211111 11 000 0 011111221111
Q ss_pred h---cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeee
Q 005304 321 E---NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVT 397 (703)
Q Consensus 321 ~---~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~ 397 (703)
. ..+++|++|++.. .....+.+.+++.. ...-++-+|..+...-.+++.++. -.+..+-
T Consensus 93 ~~k~~~~~LiIlDD~~~------------~~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~i~ 154 (241)
T PF04665_consen 93 QKKNNPRFLIILDDLGD------------KKLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDYFII 154 (241)
T ss_pred ccCCCCCeEEEEeCCCC------------chhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceEEEE
Confidence 1 3368999999632 11233456666653 223467888888888899999866 5666665
Q ss_pred ecCCChhhHHHHHHHH
Q 005304 398 VDVPDIRGRTEILKVH 413 (703)
Q Consensus 398 i~~Pd~~eR~~IL~~~ 413 (703)
+. -+......|++.+
T Consensus 155 ~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 155 FN-NSKRDLENIYRNM 169 (241)
T ss_pred ec-CcHHHHHHHHHhc
Confidence 64 4555555555544
No 409
>PRK06547 hypothetical protein; Provisional
Probab=96.57 E-value=0.0022 Score=63.43 Aligned_cols=33 Identities=36% Similarity=0.486 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEe
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (703)
.+.-|++.|++|+|||++|+.+++..+++++..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 355799999999999999999999998887754
No 410
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.57 E-value=0.012 Score=59.29 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIA 285 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA 285 (703)
-++|+||.|+|||++.|.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 59999999999999999998
No 411
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.57 E-value=0.0048 Score=62.87 Aligned_cols=29 Identities=48% Similarity=0.838 Sum_probs=26.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEe
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (703)
|+++||||+|||++|+.+|...+++.+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999999776654
No 412
>PRK06696 uridine kinase; Validated
Probab=96.56 E-value=0.0042 Score=63.72 Aligned_cols=38 Identities=34% Similarity=0.475 Sum_probs=33.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 301 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~ 301 (703)
|.-|.+.|+||+||||+|+.|+..+ |.+++.++..+|.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 5579999999999999999999988 7888888877775
No 413
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.56 E-value=0.0023 Score=62.45 Aligned_cols=31 Identities=35% Similarity=0.561 Sum_probs=28.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEe
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (703)
+.++|+|++|+|||++++.+|..++.||+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 3689999999999999999999999998754
No 414
>PRK13764 ATPase; Provisional
Probab=96.56 E-value=0.0031 Score=73.64 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=41.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC---CCEEEee-chhHH-----HHHhhhhhhHHHHHHHHHHhcCCeEEEEcCccc
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSIS-GSEFV-----EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 334 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~---~pfi~is-~se~~-----~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~ 334 (703)
.+++|++||||+||||++++++..+. ..+.++. ..++. ..+... ........+.+....|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCCCC
Confidence 35899999999999999999988763 2232321 11111 111100 01122233333467899999999843
No 415
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.56 E-value=0.0024 Score=63.04 Aligned_cols=34 Identities=26% Similarity=0.650 Sum_probs=30.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeec
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (703)
++.|+|.||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3469999999999999999999999999887654
No 416
>PRK14529 adenylate kinase; Provisional
Probab=96.56 E-value=0.0048 Score=63.65 Aligned_cols=35 Identities=17% Similarity=0.408 Sum_probs=28.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
.++|.||||+||||+++.||...+.+.+ +..++..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdllr 36 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIFR 36 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhhh
Confidence 3899999999999999999999997765 4444443
No 417
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.55 E-value=0.013 Score=62.06 Aligned_cols=172 Identities=17% Similarity=0.150 Sum_probs=94.0
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhhH
Q 005304 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASR 311 (703)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~~ 311 (703)
+++=.+++.+-+.++..-+..|. .+.||.|.+|+||++++|..|.-++..++.+..+.-.+ ...-...
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~----------Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPR----------GHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTT----------EEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCCC----------CCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHH
Confidence 45666778888888888787764 27999999999999999999999999999887643111 1222345
Q ss_pred HHHHHHHHH-hcCCeEEEEcCcccc-----------cccCCCCCCCCChHHHHHHHHHHhhhcC--ccC-----------
Q 005304 312 VRDLFKKAK-ENAPCIVFVDEIDAV-----------GRQRGTGIGGGNDEREQTLNQLLTEMDG--FEG----------- 366 (703)
Q Consensus 312 ir~lF~~A~-~~aP~ILfIDEID~L-----------~~~r~~~~~~~~~e~~~~l~~LL~~ld~--~~~----------- 366 (703)
++.++..|- ++.|++++|+|-+-. .....-..--..+|.+..+..+-..... ...
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~ 156 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIE 156 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHH
Confidence 666666554 567888888874432 1111100011245566666555443321 110
Q ss_pred --CCC--eEEEEecCCcc-----cccccccCCCccceeeeecCCChhhHHHHHHHHhcCCC
Q 005304 367 --NTG--IIVIAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK 418 (703)
Q Consensus 367 --~~~--ViVIaaTN~p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~ 418 (703)
+.+ |+++.....+. .--|+|.. +. ....+...+.+....+-..++.+..
T Consensus 157 rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~--~c-tIdW~~~W~~eaL~~Va~~~l~~~~ 214 (268)
T PF12780_consen 157 RVRKNLHIVLCMSPVGPNFRDRCRSFPALVN--CC-TIDWFDPWPEEALLSVANKFLSDIE 214 (268)
T ss_dssp HHCCCEEEEEEESTTTTCCCHHHHHHCCHHH--HS-EEEEEES--HHHHHHHHHHHCCHHH
T ss_pred HHHhheeEEEEECCCCchHHHHHHhCcchhc--cc-EEEeCCcCCHHHHHHHHHHHHHhhc
Confidence 112 33333322221 12345554 22 2556777778888888887776543
No 418
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.55 E-value=0.007 Score=64.59 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=30.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----C-CCEEEeechhH
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEA----G-VPFFSISGSEF 300 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~----~-~pfi~is~se~ 300 (703)
.++.++|+||+|+||||++..+|..+ + ..+..+++..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 45679999999999999999998754 3 67777776653
No 419
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.55 E-value=0.016 Score=57.15 Aligned_cols=104 Identities=20% Similarity=0.224 Sum_probs=58.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC--CCEEEeechhHHH------H---H----------------hhh--hhhHHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVE------M---F----------------VGV--GASRVRD 314 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~se~~~------~---~----------------~G~--~~~~ir~ 314 (703)
..-+.|.||+|+|||+|++.+++... .--+.+++.+... . | ... +-.+.+-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv 107 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRL 107 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHH
Confidence 34689999999999999999998642 1112222211100 0 0 000 0122334
Q ss_pred HHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005304 315 LFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (703)
Q Consensus 315 lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (703)
.+..|--..|.++++||-.+- -+......+.+++.++. + +..+|.+|+.++.+
T Consensus 108 ~laral~~~p~~lllDEP~~~----------LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 160 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVG----------LDPITERQLLSLIFEVL----K-DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHhcCCCEEEEECCccc----------CCHHHHHHHHHHHHHHc----C-CCEEEEEecCHHHH
Confidence 455556678999999997553 23344555666666553 1 24556667765544
No 420
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.54 E-value=0.013 Score=57.28 Aligned_cols=100 Identities=32% Similarity=0.469 Sum_probs=56.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC-----------CEEEeech------hHHHHH----hh--hhhhHHHHHHHHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGV-----------PFFSISGS------EFVEMF----VG--VGASRVRDLFKKAK 320 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~-----------pfi~is~s------e~~~~~----~G--~~~~~ir~lF~~A~ 320 (703)
..-+.|.||+|+|||+|++.+++.... .+.++... ...+.. .. .+-.+.|-.+..|-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral 106 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLL 106 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999986520 11111111 001110 00 01123344455666
Q ss_pred hcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcc
Q 005304 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (703)
Q Consensus 321 ~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 380 (703)
...|.++++||-.+- -+......+.+++.++ +..+|.+|++++
T Consensus 107 ~~~p~~lllDEPt~~----------LD~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 107 LHKPKFVFLDEATSA----------LDEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HcCCCEEEEECCccc----------cCHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 678999999997553 2334445555555543 135666677654
No 421
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.53 E-value=0.0036 Score=68.59 Aligned_cols=72 Identities=25% Similarity=0.360 Sum_probs=47.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEee-chhHHH------------HHhhhhhhHHHHHHHHHHhcCCeE
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSIS-GSEFVE------------MFVGVGASRVRDLFKKAKENAPCI 326 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~--pfi~is-~se~~~------------~~~G~~~~~ir~lF~~A~~~aP~I 326 (703)
+..+++|+.||+|+||||++++++..... .++.+. ..++.- ...+...-...++++.+....|..
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 44558999999999999999999987632 222221 111110 001122234567888888899999
Q ss_pred EEEcCcc
Q 005304 327 VFVDEID 333 (703)
Q Consensus 327 LfIDEID 333 (703)
|++.|+-
T Consensus 240 IivGEiR 246 (344)
T PRK13851 240 ILLGEMR 246 (344)
T ss_pred EEEEeeC
Confidence 9999983
No 422
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.53 E-value=0.0097 Score=57.34 Aligned_cols=104 Identities=29% Similarity=0.382 Sum_probs=59.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCC--EEEeechhHHH-------HH------hhhhhhHHHHHHHHHHhcCCeEEEE
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVP--FFSISGSEFVE-------MF------VGVGASRVRDLFKKAKENAPCIVFV 329 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~p--fi~is~se~~~-------~~------~G~~~~~ir~lF~~A~~~aP~ILfI 329 (703)
.-+.|.||+|+|||+|.+++++..... -++++...... .. ...+ ...+-.+..+-...|.++++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G-~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGG-QRQRVALARALLLNPDLLLL 104 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHH-HHHHHHHHHHHhcCCCEEEE
Confidence 468999999999999999999876321 12333221110 00 1112 22333455555667899999
Q ss_pred cCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccccc
Q 005304 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (703)
Q Consensus 330 DEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 383 (703)
||...=. +......+.+++.++- .+ +..+|.+|+..+.+.
T Consensus 105 DEp~~~l----------D~~~~~~l~~~l~~~~---~~-~~tii~~sh~~~~~~ 144 (157)
T cd00267 105 DEPTSGL----------DPASRERLLELLRELA---EE-GRTVIIVTHDPELAE 144 (157)
T ss_pred eCCCcCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 9986532 2333445555555442 12 345666777655544
No 423
>PRK14530 adenylate kinase; Provisional
Probab=96.53 E-value=0.0023 Score=65.27 Aligned_cols=35 Identities=31% Similarity=0.566 Sum_probs=28.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
.|+|.||||+||||+++.||...+++++.. .++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~--g~~lr 39 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT--GDALR 39 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec--cHHHH
Confidence 499999999999999999999998776643 44443
No 424
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.53 E-value=0.059 Score=60.87 Aligned_cols=74 Identities=27% Similarity=0.357 Sum_probs=47.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHh----cCCCEEEeechhHHHH-------H---hh---------hhh-hHHHHHHH
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSISGSEFVEM-------F---VG---------VGA-SRVRDLFK 317 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e----~~~pfi~is~se~~~~-------~---~G---------~~~-~~ir~lF~ 317 (703)
..|.-++++|++|+|||+++..+|.. .|..+..++|..+... + .+ ..+ ....+.++
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 34778999999999999998888765 3667888887644211 1 00 011 22345556
Q ss_pred HHHhcCCeEEEEcCcccc
Q 005304 318 KAKENAPCIVFVDEIDAV 335 (703)
Q Consensus 318 ~A~~~aP~ILfIDEID~L 335 (703)
.++.....+|+||=...+
T Consensus 177 ~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHhcCCCEEEEeCCCcc
Confidence 665566678888876443
No 425
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.52 E-value=0.013 Score=72.58 Aligned_cols=177 Identities=21% Similarity=0.215 Sum_probs=98.1
Q ss_pred CCceEEEEcCCCChHHHHH-HHHHHhcCCCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcC---------------CeE
Q 005304 263 IPKGVLLVGPPGTGKTLLA-KAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENA---------------PCI 326 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LA-rAlA~e~~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~a---------------P~I 326 (703)
--|+++++||||+|||.|. -++-.+.-..++++|-+.-.. ++..++ .+++-...- --|
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls-~Ler~t~yy~~tg~~~l~PK~~vK~lV 1566 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLS-VLERETEYYPNTGVVRLYPKPVVKDLV 1566 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHH-HHHhhceeeccCCeEEEccCcchhheE
Confidence 3469999999999999864 677778888888887653221 111222 222211111 148
Q ss_pred EEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCC--------CCeEEEEecCCcccccccccCCCccce---e
Q 005304 327 VFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN--------TGIIVIAATNRADILDSALLRPGRFDR---Q 395 (703)
Q Consensus 327 LfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~--------~~ViVIaaTN~p~~LD~aLlRpgRfdr---~ 395 (703)
||.|||. +-..+.-+ .+..--.+.+| .+-+||... .++++.+++|.+..... .-=|.||-+ .
T Consensus 1567 LFcDeIn-Lp~~~~y~----~~~vI~FlR~l-~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gR-v~~~eRf~r~~v~ 1639 (3164)
T COG5245 1567 LFCDEIN-LPYGFEYY----PPTVIVFLRPL-VERQGFWSSIAVSWVTICGIILYGACNPGTDEGR-VKYYERFIRKPVF 1639 (3164)
T ss_pred EEeeccC-CccccccC----CCceEEeeHHH-HHhcccccchhhhHhhhcceEEEccCCCCCCccc-CccHHHHhcCceE
Confidence 9999998 42211110 00000011122 223444332 37899999998765331 111224544 6
Q ss_pred eeecCCChhhHHHHHHHHhcCCCCCc-c------------ccH--------HHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 005304 396 VTVDVPDIRGRTEILKVHGSNKKFDA-D------------VSL--------DVIAMRTPGFSGADLANLLNEAAILAG 452 (703)
Q Consensus 396 I~i~~Pd~~eR~~IL~~~l~~~~l~~-d------------vdl--------~~lA~~t~G~sgadL~~lv~eAa~~A~ 452 (703)
+.+..|.......|.+.++.+..+-- + +.+ ...-+.--||+|+||-..++-..-.|.
T Consensus 1640 vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~yae 1717 (3164)
T COG5245 1640 VFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFGYAE 1717 (3164)
T ss_pred EEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHhHHh
Confidence 78889999999998887765432211 1 000 000111247999999888876655553
No 426
>PHA02774 E1; Provisional
Probab=96.52 E-value=0.01 Score=68.41 Aligned_cols=33 Identities=18% Similarity=0.388 Sum_probs=27.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEE-Eeec
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFF-SISG 297 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi-~is~ 297 (703)
..++|+||||||||++|-+|++.++..++ ++|.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 48999999999999999999999865443 3554
No 427
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.52 E-value=0.0096 Score=58.39 Aligned_cols=103 Identities=26% Similarity=0.368 Sum_probs=58.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC--CEEEeechhHH--------H----------HH--------hhhhhhHHHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFV--------E----------MF--------VGVGASRVRDL 315 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~--pfi~is~se~~--------~----------~~--------~G~~~~~ir~l 315 (703)
..-+.|.||+|+|||+|.+.+++.... --+.+++.... . .+ ...+ .+-+-.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G-~~~rl~ 106 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGG-QRQRIA 106 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHH-HHHHHH
Confidence 346999999999999999999986521 01112221110 0 00 0111 122333
Q ss_pred HHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005304 316 FKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (703)
Q Consensus 316 F~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (703)
+..+-...|.++++||-.+- -+......+.+++.++. . +..+|.+|+.++.+
T Consensus 107 la~al~~~p~llllDEP~~g----------LD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 158 (171)
T cd03228 107 IARALLRDPPILILDEATSA----------LDPETEALILEALRALA---K--GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHhcCCCEEEEECCCcC----------CCHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHH
Confidence 55555678999999996542 13334455555565543 1 24666778776654
No 428
>PRK08233 hypothetical protein; Provisional
Probab=96.52 E-value=0.0076 Score=58.98 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=26.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC-CCEEEeec
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAG-VPFFSISG 297 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~-~pfi~is~ 297 (703)
.-|.+.|+||+||||+|+.|+..++ .+++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3578899999999999999999885 44554443
No 429
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.51 E-value=0.0074 Score=75.10 Aligned_cols=135 Identities=22% Similarity=0.312 Sum_probs=90.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH--HHhhh----hhh---HHHHHHHHHHhcCCeEEEEcCccccc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE--MFVGV----GAS---RVRDLFKKAKENAPCIVFVDEIDAVG 336 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~--~~~G~----~~~---~ir~lF~~A~~~aP~ILfIDEID~L~ 336 (703)
++||.||..+|||++...+|.+.|..|+.++-.+..+ .|.|. ... .-..++-.|..+. ..|++||+.--
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC-
Confidence 6999999999999999999999999999998765543 23332 111 1122333333322 47889998654
Q ss_pred ccCCCCCCCCChHHHHHHHHHHhhhcCc---------cCCCCeEEEEecCCcc------cccccccCCCccceeeeecCC
Q 005304 337 RQRGTGIGGGNDEREQTLNQLLTEMDGF---------EGNTGIIVIAATNRAD------ILDSALLRPGRFDRQVTVDVP 401 (703)
Q Consensus 337 ~~r~~~~~~~~~e~~~~l~~LL~~ld~~---------~~~~~ViVIaaTN~p~------~LD~aLlRpgRfdr~I~i~~P 401 (703)
....-..+|.||..-..+ .+.+++.+.||-|.|- .|..|++. ||- .++|.--
T Consensus 968 ----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl-E~hFddi 1034 (4600)
T COG5271 968 ----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL-EMHFDDI 1034 (4600)
T ss_pred ----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-hhhcccC
Confidence 234556777777532211 2345688888888765 46778877 884 5677766
Q ss_pred ChhhHHHHHHHHhc
Q 005304 402 DIRGRTEILKVHGS 415 (703)
Q Consensus 402 d~~eR~~IL~~~l~ 415 (703)
..++...||...+.
T Consensus 1035 pedEle~ILh~rc~ 1048 (4600)
T COG5271 1035 PEDELEEILHGRCE 1048 (4600)
T ss_pred cHHHHHHHHhccCc
Confidence 77888888876553
No 430
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.50 E-value=0.0075 Score=65.69 Aligned_cols=70 Identities=26% Similarity=0.268 Sum_probs=47.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhh--------hHHHH---HHHHHHhcCCeEEEEcCcc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGA--------SRVRD---LFKKAKENAPCIVFVDEID 333 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~--------~~ir~---lF~~A~~~aP~ILfIDEID 333 (703)
+.++|.|+||+|||+|++.++...+.+++.-.+.++.....+... ..+.. ....+...++.|||+|- +
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~~~~~~~~a~~iif~D~-~ 241 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRYIDYAVRHAHKIAFIDT-D 241 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCeEEEcC-C
Confidence 369999999999999999999999999987777666554321000 11111 12334455667999995 5
Q ss_pred cc
Q 005304 334 AV 335 (703)
Q Consensus 334 ~L 335 (703)
.+
T Consensus 242 ~~ 243 (325)
T TIGR01526 242 FI 243 (325)
T ss_pred hH
Confidence 44
No 431
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.49 E-value=0.0079 Score=64.17 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=31.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~ 304 (703)
++-+++.|+|||||||+|+.++.+.. .++.++..++....
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~~ 41 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQSL 41 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHHh
Confidence 34689999999999999999999983 35566666665543
No 432
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.49 E-value=0.0031 Score=64.15 Aligned_cols=135 Identities=22% Similarity=0.338 Sum_probs=63.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH-HhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 344 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~-~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~ 344 (703)
-++|+||+|||||.+|-++|++.|.|++..+.-..... .+|.+.....+ + +..+ =+++||-..-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~e-l----~~~~-RiyL~~r~l~--------- 67 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSE-L----KGTR-RIYLDDRPLS--------- 67 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGG-G----TT-E-EEES----GG---------
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHH-H----cccc-eeeecccccc---------
Confidence 37899999999999999999999999999886554432 23322111111 1 1112 2677764332
Q ss_pred CCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC-cc-cccccccCCCccce-eeeecCCChhhHHHHHHHHhcC
Q 005304 345 GGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-AD-ILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSN 416 (703)
Q Consensus 345 ~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~-p~-~LD~aLlRpgRfdr-~I~i~~Pd~~eR~~IL~~~l~~ 416 (703)
.|.-...+....|+..++......++|+=+-+.. .. .......+ -.|.. +..+++||.+.-..-.+.+.++
T Consensus 68 ~G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~-~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ 141 (233)
T PF01745_consen 68 DGIINAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWS-LDFRWHIRRLRLPDEEVFMARAKRRVRQ 141 (233)
T ss_dssp G-S--HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTS-SSSEEEEEE-----HHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhccccc-CCCeEEEEEEECCChHHHHHHHHHHHHH
Confidence 1233345566677777877777555555554432 11 11111121 13444 4467788877655544444433
No 433
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.48 E-value=0.015 Score=60.81 Aligned_cols=58 Identities=22% Similarity=0.370 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005304 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (703)
Q Consensus 311 ~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (703)
.-|-++..|-...|.+|++||--. +-+...+..+..||.++.. . +..|+..|...+.+
T Consensus 145 ~QRV~lARAL~~~p~lllLDEP~~----------gvD~~~~~~i~~lL~~l~~---e-g~tIl~vtHDL~~v 202 (254)
T COG1121 145 KQRVLLARALAQNPDLLLLDEPFT----------GVDVAGQKEIYDLLKELRQ---E-GKTVLMVTHDLGLV 202 (254)
T ss_pred HHHHHHHHHhccCCCEEEecCCcc----------cCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCcHHh
Confidence 345567777778899999999532 2344566777778777652 2 66777778765543
No 434
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.46 E-value=0.0092 Score=58.62 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=31.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC---CCEEEeechhHHH
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVE 302 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~~---~pfi~is~se~~~ 302 (703)
..|.-++|+|+||+|||++|+.++..+. ...+.++...+.+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~ 48 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh
Confidence 3455799999999999999999998875 3456666655544
No 435
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.46 E-value=0.019 Score=56.10 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=28.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhH
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~ 300 (703)
++++||||+|||++++.+|..+ +..+..+++..+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 7899999999999999998764 677888877643
No 436
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.45 E-value=0.011 Score=59.66 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=31.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 306 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G 306 (703)
-+.|+|++|+|||++++.++...|.+++ ++.++......
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~~~~~~ 41 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYAREALA 41 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHHHHHHh
Confidence 4889999999999999999988888876 56666554443
No 437
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.44 E-value=0.083 Score=56.81 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=32.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
+.|.-+++.|++|+|||++|+.+|..++.+. .+++..+.+
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~-vi~~D~~re 129 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRS-VIGTDSIRE 129 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCE-EEechHHHH
Confidence 4577899999999999999999999999884 355555543
No 438
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.44 E-value=0.023 Score=55.73 Aligned_cols=104 Identities=22% Similarity=0.305 Sum_probs=57.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC--CEEEeechh-------HHH----------HHhh---------hhhhHHHHHH
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSE-------FVE----------MFVG---------VGASRVRDLF 316 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~--pfi~is~se-------~~~----------~~~G---------~~~~~ir~lF 316 (703)
.-+.|.||+|+|||+|++.+++.... --+.+++.+ +.. .+.+ .+-.+.+-.+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~l 106 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLAL 106 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHHH
Confidence 35899999999999999999985410 001111100 000 0000 1112233446
Q ss_pred HHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005304 317 KKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (703)
Q Consensus 317 ~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (703)
..|-...|.|+++||-.+-. +......+.+++..+. .+ +..+|.+|+.++.+
T Consensus 107 aral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~---~~-g~tiii~th~~~~~ 158 (173)
T cd03230 107 AQALLHDPELLILDEPTSGL----------DPESRREFWELLRELK---KE-GKTILLSSHILEEA 158 (173)
T ss_pred HHHHHcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEECCCHHHH
Confidence 66666889999999975532 3344455555555542 12 34566667765543
No 439
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.44 E-value=0.012 Score=57.25 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=19.6
Q ss_pred CceEEEEcCCCChHHHHHHHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIA 285 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA 285 (703)
++-.+++||.|+|||++.++++
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~ 42 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999984
No 440
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.42 E-value=0.0026 Score=61.90 Aligned_cols=28 Identities=36% Similarity=0.681 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (703)
|-+.|||||||||+|+-+|..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6688999999999999999999999986
No 441
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.41 E-value=0.0061 Score=64.15 Aligned_cols=111 Identities=24% Similarity=0.287 Sum_probs=65.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC---------CCEEEeechh-H--------HHHHhhh--------------hhhHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSISGSE-F--------VEMFVGV--------------GASRVR 313 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~---------~pfi~is~se-~--------~~~~~G~--------------~~~~ir 313 (703)
-.=|+||||+|||.|+-.+|-.+. ..++|++... | .+.+-.. ....+.
T Consensus 40 itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~ 119 (256)
T PF08423_consen 40 ITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELL 119 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHH
T ss_pred EEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHH
Confidence 345899999999999998876543 3478887543 1 1111000 001111
Q ss_pred HHH----HHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005304 314 DLF----KKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (703)
Q Consensus 314 ~lF----~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (703)
.++ .......-.+|+||-|-++.+..-.+ .+...++...+..++..|..+....++.||.|..
T Consensus 120 ~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~-~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNq 186 (256)
T PF08423_consen 120 ELLEQLPKLLSESKIKLIVIDSIAALFRSEFSG-RGDLAERQRMLARLARILKRLARKYNIAVVVTNQ 186 (256)
T ss_dssp HHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGS-TTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHhhccccceEEEEecchHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHHHHhCCceEEeece
Confidence 122 22233456799999999997643221 1223456778888887777776667777775543
No 442
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.40 E-value=0.0041 Score=68.06 Aligned_cols=27 Identities=56% Similarity=0.858 Sum_probs=22.4
Q ss_pred cCCCCce--EEEEcCCCChHHHHHHHHHH
Q 005304 260 GARIPKG--VLLVGPPGTGKTLLAKAIAG 286 (703)
Q Consensus 260 g~~~p~g--vLL~GPpGTGKT~LArAlA~ 286 (703)
...+.+| +.|.||+||||||+.|+||+
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3444555 77999999999999999998
No 443
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.39 E-value=0.023 Score=65.63 Aligned_cols=42 Identities=29% Similarity=0.284 Sum_probs=31.4
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEeechhHH
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFV 301 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~se~~ 301 (703)
|.+...-+||+|+||+|||+|+..++.+. |-++++++..+-.
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~ 72 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESP 72 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCH
Confidence 34445579999999999999999875432 6788888875433
No 444
>PRK14528 adenylate kinase; Provisional
Probab=96.39 E-value=0.0032 Score=62.92 Aligned_cols=34 Identities=29% Similarity=0.669 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
.+++.||||+|||++++.+|...+++++.+ .++.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~--~~~l 36 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST--GDIL 36 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC--CHHH
Confidence 589999999999999999999999887653 4443
No 445
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.37 E-value=0.0032 Score=61.96 Aligned_cols=34 Identities=26% Similarity=0.534 Sum_probs=27.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
-+++.||||+||||+++.++...|.+. ++++++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHHHH
Confidence 488999999999999999999987654 4555544
No 446
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.36 E-value=0.017 Score=57.82 Aligned_cols=32 Identities=50% Similarity=0.840 Sum_probs=24.6
Q ss_pred hhccCCCCce--EEEEcCCCChHHHHHHHHHHhc
Q 005304 257 TAIGARIPKG--VLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 257 ~~lg~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 288 (703)
+.....+++| ++|.||+|.||||+.|.+..+.
T Consensus 19 ~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 19 RDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred hCceEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 3344455554 8899999999999999997754
No 447
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.36 E-value=0.043 Score=59.69 Aligned_cols=37 Identities=30% Similarity=0.418 Sum_probs=28.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeech
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s 298 (703)
..|.-++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 346679999999999999999998865 4555555554
No 448
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.35 E-value=0.007 Score=50.50 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=24.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhc-CCCEEEeec
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEA-GVPFFSISG 297 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~-~~pfi~is~ 297 (703)
+.+.|+||+|||+++++++..+ +..+..++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 6789999999999999999985 344444443
No 449
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.35 E-value=0.068 Score=56.82 Aligned_cols=37 Identities=30% Similarity=0.476 Sum_probs=29.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeech
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s 298 (703)
..|+-++++||+|+|||+++..+|..+ +..+..+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 446789999999999999999998755 5566666654
No 450
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.32 E-value=0.035 Score=57.31 Aligned_cols=21 Identities=43% Similarity=0.765 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAG 286 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~ 286 (703)
-+.|.||+|||||||...++.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999976
No 451
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.31 E-value=0.049 Score=62.28 Aligned_cols=153 Identities=25% Similarity=0.298 Sum_probs=82.0
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhccC--CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEee-chhHHH------
Q 005304 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGA--RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS-GSEFVE------ 302 (703)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~lg~--~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is-~se~~~------ 302 (703)
.|.|.+.+|+.+.-++-- .-++--.-|. +-.-+|||.|.|.+-|+-|.|++-+.+-..+-..- +|.=+.
T Consensus 302 SI~GH~~vKkAillLLlG--GvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLG--GVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhc--cceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 578999999887655422 1111111122 22237999999999999999999776533222110 110000
Q ss_pred HHhhhhhhHHHHHHHHHHh-cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhh----c--Cc--cCCCCeEEE
Q 005304 303 MFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM----D--GF--EGNTGIIVI 373 (703)
Q Consensus 303 ~~~G~~~~~ir~lF~~A~~-~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~l----d--~~--~~~~~ViVI 373 (703)
.-...+++++. .-|.- ....|++|||+|.+. +-....+.+..++- . |+ .-|..+-|+
T Consensus 380 tD~eTGERRLE---AGAMVLADRGVVCIDEFDKMs-----------DiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVl 445 (818)
T KOG0479|consen 380 TDQETGERRLE---AGAMVLADRGVVCIDEFDKMS-----------DIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVL 445 (818)
T ss_pred eccccchhhhh---cCceEEccCceEEehhccccc-----------chhHHHHHHHHhcceEEeEeccchhhhccceeee
Confidence 00111222221 01100 123699999999982 22233344433321 0 11 124568899
Q ss_pred EecCCcc-------------cccccccCCCccceee-eecCCC
Q 005304 374 AATNRAD-------------ILDSALLRPGRFDRQV-TVDVPD 402 (703)
Q Consensus 374 aaTN~p~-------------~LD~aLlRpgRfdr~I-~i~~Pd 402 (703)
||.|... .|+..|++ |||..+ .++.-|
T Consensus 446 AAANPvyG~Yd~~k~P~eNIgLpDSLLS--RFDLlFv~lD~~d 486 (818)
T KOG0479|consen 446 AAANPVYGQYDQSKTPMENIGLPDSLLS--RFDLLFVVLDDID 486 (818)
T ss_pred eecCccccccCCCCChhhccCCcHHHHh--hhcEEEEEecccc
Confidence 9999643 47788999 999744 334333
No 452
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.31 E-value=0.015 Score=67.06 Aligned_cols=77 Identities=27% Similarity=0.324 Sum_probs=49.6
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHHh------hh----------------------h
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV----------------------G 308 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~~------G~----------------------~ 308 (703)
|......++++|+||+|||+++..++.+. |-++++++..+-.+.+. |. .
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 34444568999999999999999887643 77888887643222110 00 0
Q ss_pred hhHHHHHHHHHHhcCCeEEEEcCccccc
Q 005304 309 ASRVRDLFKKAKENAPCIVFVDEIDAVG 336 (703)
Q Consensus 309 ~~~ir~lF~~A~~~aP~ILfIDEID~L~ 336 (703)
...+..+.+......|.+++||-+..+.
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~ 376 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALA 376 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 1122233334455678899999998885
No 453
>PF13479 AAA_24: AAA domain
Probab=96.30 E-value=0.013 Score=59.74 Aligned_cols=66 Identities=24% Similarity=0.396 Sum_probs=38.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhH---HHH------HhhhhhhHHHHHHHHHH--hcCCeEEEEcCcc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF---VEM------FVGVGASRVRDLFKKAK--ENAPCIVFVDEID 333 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~---~~~------~~G~~~~~ir~lF~~A~--~~aP~ILfIDEID 333 (703)
-.++|||+||+|||++|..+ +-|++ +++..= ... +.-.+...+.+.++.+. ...-.+|+||-++
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~l~-id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKPLF-IDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCeEE-EEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 36999999999999999888 33332 322111 000 00113344555554432 2344689999888
Q ss_pred cc
Q 005304 334 AV 335 (703)
Q Consensus 334 ~L 335 (703)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 76
No 454
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.30 E-value=0.0035 Score=63.62 Aligned_cols=34 Identities=41% Similarity=0.784 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
|++.||||+|||++|+.+|...+++.+. ..++..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHHH
Confidence 7899999999999999999999876654 445543
No 455
>PRK02496 adk adenylate kinase; Provisional
Probab=96.30 E-value=0.0037 Score=61.91 Aligned_cols=30 Identities=33% Similarity=0.649 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEe
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (703)
-+++.||||+|||++++.+|...+.+.+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 389999999999999999999998776543
No 456
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.30 E-value=0.0074 Score=66.85 Aligned_cols=69 Identities=26% Similarity=0.358 Sum_probs=45.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC-----CCEEEeec-hhHH-----------HHHhhhhhhHHHHHHHHHHhcCCeEEE
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSISG-SEFV-----------EMFVGVGASRVRDLFKKAKENAPCIVF 328 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~-----~pfi~is~-se~~-----------~~~~G~~~~~ir~lF~~A~~~aP~ILf 328 (703)
.+|++||+|+||||+++++..... ..++.+.- .++. ..-+|.......+.++.+....|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999987652 33444321 1211 011222222355667777778999999
Q ss_pred EcCccc
Q 005304 329 VDEIDA 334 (703)
Q Consensus 329 IDEID~ 334 (703)
++|+-.
T Consensus 231 vGEiRd 236 (372)
T TIGR02525 231 VGEIRD 236 (372)
T ss_pred eCCCCC
Confidence 999843
No 457
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.30 E-value=0.089 Score=54.84 Aligned_cols=187 Identities=17% Similarity=0.201 Sum_probs=100.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH---HHhh--hhhhHHHHHHH---HHHhc---CCeEE--
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE---MFVG--VGASRVRDLFK---KAKEN---APCIV-- 327 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~---~~~G--~~~~~ir~lF~---~A~~~---aP~IL-- 327 (703)
.+.|.-+||=|+||+|||++|.-+|.++|.+-+. +...+.+ ..++ ..+..-...|. ..+.. .| ||
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~vi-sTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~p-iiaG 163 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVI-STDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENP-IIAG 163 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCCceee-cchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcc-hhhh
Confidence 3557789999999999999999999999987653 2222222 2222 00111111222 21111 11 11
Q ss_pred EEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHH
Q 005304 328 FVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 407 (703)
Q Consensus 328 fIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~ 407 (703)
|.|....+. -..+.++..-+.+ ..++++=+.-=-|..+++..+. --...+.+-.+|.+.-+
T Consensus 164 F~dqa~~V~-----------~GI~~VI~RAi~e------G~~lIIEGvHlVPg~i~~~~~~--~n~~~~~l~i~dee~Hr 224 (299)
T COG2074 164 FEDQASAVM-----------VGIEAVIERAIEE------GEDLIIEGVHLVPGLIKEEALG--NNVFMFMLYIADEELHR 224 (299)
T ss_pred HHHHhHHHH-----------HHHHHHHHHHHhc------CcceEEEeeeeccccccHhhhc--cceEEEEEEeCCHHHHH
Confidence 222222220 0112223332221 2223333332347777777663 22335677778877755
Q ss_pred HHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCc
Q 005304 408 EILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGM 475 (703)
Q Consensus 408 ~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~~g~ 475 (703)
.=|....+....... ....++. -.++..+-......|...|-..|+.+|+++++++++.-.
T Consensus 225 ~RF~~R~~~t~~~rp--~~Ryl~y-----f~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~il~~i 285 (299)
T COG2074 225 ERFYDRIRYTHASRP--GGRYLEY-----FKEIRTIHDYLVERAREHGVPVIENDDIDETVDRILEDI 285 (299)
T ss_pred HHHHHHHHHHhccCc--hhHHHHH-----HHHHHHHHHHHHHHHHhcCCCeeccccHHHHHHHHHHHH
Confidence 555444333211111 1222221 246777778888888889999999999999999887543
No 458
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.28 E-value=0.13 Score=53.55 Aligned_cols=136 Identities=12% Similarity=0.047 Sum_probs=93.2
Q ss_pred CceEEEEcCCC-ChHHHHHHHHHHhcCC---------CEEEeechhHHHH-HhhhhhhHHHHHHHHHHh----cCCeEEE
Q 005304 264 PKGVLLVGPPG-TGKTLLAKAIAGEAGV---------PFFSISGSEFVEM-FVGVGASRVRDLFKKAKE----NAPCIVF 328 (703)
Q Consensus 264 p~gvLL~GPpG-TGKT~LArAlA~e~~~---------pfi~is~se~~~~-~~G~~~~~ir~lF~~A~~----~aP~ILf 328 (703)
....|+.|..+ ++|..++..++...-. .+..+....-... -..-+.+.+|++-+.+.. ...-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 34799999998 9999998888775522 2233321100000 001234567776665532 2346999
Q ss_pred EcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHH
Q 005304 329 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 408 (703)
Q Consensus 329 IDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~ 408 (703)
|+++|.+ .....|.||.-++. +..++++|..|+.++.+.|.+++ |+ ..+.++.|+...-.+
T Consensus 95 I~~ae~m--------------t~~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~e 155 (263)
T PRK06581 95 IYSAELM--------------NLNAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYNE 155 (263)
T ss_pred EechHHh--------------CHHHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHHH
Confidence 9999999 34578899999885 45567888888889999999998 77 478899999888777
Q ss_pred HHHHHhcCCC
Q 005304 409 ILKVHGSNKK 418 (703)
Q Consensus 409 IL~~~l~~~~ 418 (703)
.....+....
T Consensus 156 ~~~~~~~p~~ 165 (263)
T PRK06581 156 LYSQFIQPIA 165 (263)
T ss_pred HHHHhccccc
Confidence 7777665543
No 459
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.28 E-value=0.012 Score=70.18 Aligned_cols=67 Identities=28% Similarity=0.347 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCC
Q 005304 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPG 390 (703)
Q Consensus 311 ~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpg 390 (703)
+-|-.+..|--..|.||++||.-+- -+.+.++.+.+-|.++.. +..+|..|+++..+ +
T Consensus 615 rQrlalARaLl~~P~ILlLDEaTSa----------LD~~sE~~I~~~L~~~~~-----~~T~I~IaHRl~ti-----~-- 672 (709)
T COG2274 615 RQRLALARALLSKPKILLLDEATSA----------LDPETEAIILQNLLQILQ-----GRTVIIIAHRLSTI-----R-- 672 (709)
T ss_pred HHHHHHHHHhccCCCEEEEeCcccc----------cCHhHHHHHHHHHHHHhc-----CCeEEEEEccchHh-----h--
Confidence 3444555556688999999997543 244566666666665542 23455667775543 3
Q ss_pred ccceeeeec
Q 005304 391 RFDRQVTVD 399 (703)
Q Consensus 391 Rfdr~I~i~ 399 (703)
+.|+.+.++
T Consensus 673 ~adrIiVl~ 681 (709)
T COG2274 673 SADRIIVLD 681 (709)
T ss_pred hccEEEEcc
Confidence 567666554
No 460
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.28 E-value=0.021 Score=56.92 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=30.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhh
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGV 307 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~ 307 (703)
|.|+|.+|+|||++++.++...+++++ ++.++.......
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~~~~~ 40 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQVVEK 40 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHHHHhc
Confidence 689999999999999999998767664 556665444433
No 461
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.26 E-value=0.0035 Score=63.75 Aligned_cols=23 Identities=57% Similarity=0.661 Sum_probs=18.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.+.||.|||||+||-+.|-+.
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 48999999999999999998754
No 462
>PRK14527 adenylate kinase; Provisional
Probab=96.25 E-value=0.0038 Score=62.39 Aligned_cols=37 Identities=35% Similarity=0.584 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
.|.-++++||||+|||++|+.+|.+.+.+.+. ..++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is--~gd~~ 41 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS--TGDIL 41 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC--ccHHH
Confidence 45579999999999999999999999876554 34444
No 463
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.25 E-value=0.01 Score=64.71 Aligned_cols=83 Identities=23% Similarity=0.436 Sum_probs=55.9
Q ss_pred cc-ccccchHHHHHHHHHHHHhcCchhhhhccCCC-CceEEEEcCCCChHHHHHHHHHHhc-CCCEEEeechhHHHHHhh
Q 005304 230 FD-DVAGVDEAKQDFMEVVEFLKKPERFTAIGARI-PKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEFVEMFVG 306 (703)
Q Consensus 230 f~-dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~-p~gvLL~GPpGTGKT~LArAlA~e~-~~pfi~is~se~~~~~~G 306 (703)
|+ ++.|+++.++++-+.+ +...+ |... .+-++|.||+|+|||+|++.+-+-+ ..|++.+..+-..+.-..
T Consensus 59 f~~~~~G~~~~i~~lV~~f---k~AA~----g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~ 131 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYF---KSAAQ----GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLH 131 (358)
T ss_pred ccccccCcHHHHHHHHHHH---HHHHh----ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhh
Confidence 55 8999999987655544 33221 2222 3468899999999999999997755 347777766555554455
Q ss_pred hhhhHHHHHHHHH
Q 005304 307 VGASRVRDLFKKA 319 (703)
Q Consensus 307 ~~~~~ir~lF~~A 319 (703)
.-...+|+.|..-
T Consensus 132 L~P~~~r~~~~~~ 144 (358)
T PF08298_consen 132 LFPKELRREFEDE 144 (358)
T ss_pred hCCHhHHHHHHHH
Confidence 5566677766543
No 464
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.24 E-value=0.021 Score=56.43 Aligned_cols=105 Identities=25% Similarity=0.400 Sum_probs=57.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCEEEeechh--------HHHH--H-------hhh------------hhhHHH
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSE--------FVEM--F-------VGV------------GASRVR 313 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~se--------~~~~--~-------~G~------------~~~~ir 313 (703)
.-+.|.||+|+|||+|.+.+++... .--+.+++.+ +... | +|. +-.+.+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qr 105 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQR 105 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHH
Confidence 3689999999999999999998641 1112222211 1000 0 000 011223
Q ss_pred HHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005304 314 DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (703)
Q Consensus 314 ~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (703)
-.+..|-...|.++++||--.- -+....+.+.+++.++.. ..+..+|.+|+.++.+
T Consensus 106 l~laral~~~p~llllDEP~~~----------LD~~~~~~~~~~l~~~~~---~~~~tiii~sh~~~~~ 161 (180)
T cd03214 106 VLLARALAQEPPILLLDEPTSH----------LDIAHQIELLELLRRLAR---ERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHhcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHH
Confidence 3344555678999999997542 133444555566655431 2134566677765543
No 465
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.23 E-value=0.03 Score=56.96 Aligned_cols=103 Identities=20% Similarity=0.201 Sum_probs=56.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHH-----hcCCCEE--------------Eeechh----HHHHHhhhhhhHHHHHHHHHHh
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAG-----EAGVPFF--------------SISGSE----FVEMFVGVGASRVRDLFKKAKE 321 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~-----e~~~pfi--------------~is~se----~~~~~~G~~~~~ir~lF~~A~~ 321 (703)
+-++|.||.|+|||++.+.++. .+|+++- .+...+ -.+.|... .+++..++..+
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e-~~~~~~il~~~-- 106 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASE-MSETAYILDYA-- 106 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHH-HHHHHHHHHhc--
Confidence 4599999999999999999964 3344321 000110 01112221 22344444433
Q ss_pred cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccccc
Q 005304 322 NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (703)
Q Consensus 322 ~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 383 (703)
..|+++++||+..= ....+.......++..+... +..+|.+|+..+..+
T Consensus 107 ~~~~lvllDE~~~g---------t~~~~~~~l~~~il~~l~~~----~~~~i~~TH~~~l~~ 155 (204)
T cd03282 107 DGDSLVLIDELGRG---------TSSADGFAISLAILECLIKK----ESTVFFATHFRDIAA 155 (204)
T ss_pred CCCcEEEeccccCC---------CCHHHHHHHHHHHHHHHHhc----CCEEEEECChHHHHH
Confidence 46789999998441 11223333334445544422 457777898766554
No 466
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.23 E-value=0.017 Score=64.35 Aligned_cols=24 Identities=42% Similarity=0.592 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~ 289 (703)
-++|+||||+|||++++.+++...
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhc
Confidence 499999999999999999998753
No 467
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.23 E-value=0.012 Score=65.91 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=32.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
.+.|.|.|++|||||||+++||...|.+++.--+.++..
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~ 257 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVF 257 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHH
Confidence 457999999999999999999999998876654544443
No 468
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.21 E-value=0.011 Score=67.06 Aligned_cols=97 Identities=21% Similarity=0.335 Sum_probs=60.5
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCce-EEEEcCCCChHHHHHHHHHHhcCCCEE-EeechhHHH
Q 005304 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKG-VLLVGPPGTGKTLLAKAIAGEAGVPFF-SISGSEFVE 302 (703)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~g-vLL~GPpGTGKT~LArAlA~e~~~pfi-~is~se~~~ 302 (703)
....+|+++.......+.+.+++. . |.| +|++||.|+|||+...++..+++-+.. .++..+=++
T Consensus 232 ~~~l~l~~Lg~~~~~~~~~~~~~~---~-----------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE 297 (500)
T COG2804 232 QVILDLEKLGMSPFQLARLLRLLN---R-----------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVE 297 (500)
T ss_pred cccCCHHHhCCCHHHHHHHHHHHh---C-----------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCee
Confidence 346778888888777776666652 2 445 566899999999999999888865444 222222221
Q ss_pred HH-hhhh--------hhHHHHHHHHHHhcCCeEEEEcCcccc
Q 005304 303 MF-VGVG--------ASRVRDLFKKAKENAPCIVFVDEIDAV 335 (703)
Q Consensus 303 ~~-~G~~--------~~~ir~lF~~A~~~aP~ILfIDEID~L 335 (703)
.. .|.. .-.....++....+.|+||.+.||-..
T Consensus 298 ~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD~ 339 (500)
T COG2804 298 YQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRDL 339 (500)
T ss_pred eecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCCH
Confidence 10 0000 001223444555688999999999543
No 469
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.20 E-value=0.0093 Score=65.53 Aligned_cols=23 Identities=48% Similarity=0.661 Sum_probs=21.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 470
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.19 E-value=0.023 Score=56.33 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.-+.|.||+|+|||+|.+.+++..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999854
No 471
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.13 Score=56.87 Aligned_cols=49 Identities=4% Similarity=-0.022 Sum_probs=32.9
Q ss_pred eeeecCCChhhHHHHHHHHhcCCCCCcc----ccHHHHHHhCCCCcHHHHHHHH
Q 005304 395 QVTVDVPDIRGRTEILKVHGSNKKFDAD----VSLDVIAMRTPGFSGADLANLL 444 (703)
Q Consensus 395 ~I~i~~Pd~~eR~~IL~~~l~~~~l~~d----vdl~~lA~~t~G~sgadL~~lv 444 (703)
.|+++.++.+|-.+++..+++..-+..+ ....++--.+ +.+|+.++.+|
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lc 457 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLC 457 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHH
Confidence 5788899999999999988766433322 2344444444 56787776665
No 472
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.18 E-value=0.016 Score=58.44 Aligned_cols=42 Identities=31% Similarity=0.578 Sum_probs=32.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc-CCCEEEeechhHHHH
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEFVEM 303 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~-~~pfi~is~se~~~~ 303 (703)
..|.-+++.|+||+|||+++..+..+. +-.++.++..+|...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 557789999999999999999998888 788899998887643
No 473
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.17 E-value=0.03 Score=57.80 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=56.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHH-h----cCCCEE--------------EeechhHHHH---HhhhhhhHHHHHHHHHHhc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAG-E----AGVPFF--------------SISGSEFVEM---FVGVGASRVRDLFKKAKEN 322 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~-e----~~~pfi--------------~is~se~~~~---~~G~~~~~ir~lF~~A~~~ 322 (703)
+-++|.||.|+|||++.+.++. . .|.++. .+...+-... ....--.++..+++.+ .
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~--~ 109 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNC--T 109 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhC--C
Confidence 3589999999999999999987 2 232211 1111111110 1111223455556554 3
Q ss_pred CCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccccc
Q 005304 323 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (703)
Q Consensus 323 aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 383 (703)
.|++++|||+..= ....+.......++..+.. ..+..+|.+|+..+..+
T Consensus 110 ~~sLvllDE~~~g---------T~~~d~~~i~~~il~~l~~---~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 110 SRSLVILDELGRG---------TSTHDGIAIAYATLHYLLE---EKKCLVLFVTHYPSLGE 158 (222)
T ss_pred CCeEEEEccCCCC---------CChhhHHHHHHHHHHHHHh---ccCCeEEEEcccHHHHH
Confidence 5789999998542 1112222223344444432 23457777898877543
No 474
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.17 E-value=0.035 Score=62.70 Aligned_cols=37 Identities=30% Similarity=0.317 Sum_probs=28.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEeechhH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEF 300 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~se~ 300 (703)
++.++|.||+|+||||++..+|..+ +..+..+++..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 4578999999999999998887643 456777777654
No 475
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.16 E-value=0.0037 Score=57.16 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~ 288 (703)
|+|.|+||+||||+|+.|+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 476
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.14 E-value=0.016 Score=61.76 Aligned_cols=21 Identities=52% Similarity=0.843 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAG 286 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~ 286 (703)
-+-|.||+|+||||+.|.||+
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAG 50 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAG 50 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 488999999999999999998
No 477
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.13 E-value=0.024 Score=59.50 Aligned_cols=44 Identities=41% Similarity=0.554 Sum_probs=34.4
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHH
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM 303 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~ 303 (703)
|.+..+.+|++|+||||||+++..++.+. |-|+++++..+-.+.
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~ 65 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEE 65 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHH
Confidence 34555679999999999999998885533 889999998765443
No 478
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.13 E-value=0.0038 Score=61.36 Aligned_cols=30 Identities=30% Similarity=0.567 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEee
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (703)
-++++|.||||||++++.++ ++|.+++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 38899999999999999999 9998887654
No 479
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=96.13 E-value=0.0063 Score=66.66 Aligned_cols=69 Identities=26% Similarity=0.397 Sum_probs=46.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC--CEEEee-chhHH-------HH------HhhhhhhHHHHHHHHHHhcCCeEEE
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSIS-GSEFV-------EM------FVGVGASRVRDLFKKAKENAPCIVF 328 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~--pfi~is-~se~~-------~~------~~G~~~~~ir~lF~~A~~~aP~ILf 328 (703)
+++++.|++|+|||++.+++.....- ..+.+. ..++. .. ..|.+.-...++++.+....|..|+
T Consensus 179 ~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~Ii 258 (340)
T TIGR03819 179 LAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRIV 258 (340)
T ss_pred CeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeEE
Confidence 48999999999999999999876531 122221 11111 00 0122233567888888889999999
Q ss_pred EcCcc
Q 005304 329 VDEID 333 (703)
Q Consensus 329 IDEID 333 (703)
+.|+-
T Consensus 259 vGEiR 263 (340)
T TIGR03819 259 VGEVR 263 (340)
T ss_pred EeCcC
Confidence 99983
No 480
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=96.13 E-value=0.025 Score=56.81 Aligned_cols=38 Identities=29% Similarity=0.393 Sum_probs=29.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHh
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~ 305 (703)
.-|.|+|++|+|||++++.++. .|+++ +++.++.....
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~--i~~D~~~~~~~ 40 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPV--IDADAIAHEVV 40 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEE--EEecHHHHHHh
Confidence 3589999999999999999998 77765 55566665443
No 481
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.045 Score=54.72 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e 287 (703)
.-+.|.||+|+|||+|++.+++.
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999973
No 482
>PRK04182 cytidylate kinase; Provisional
Probab=96.12 E-value=0.0051 Score=60.00 Aligned_cols=29 Identities=38% Similarity=0.691 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (703)
-|+|.|+||+|||++++.+|..++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 38899999999999999999999998764
No 483
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.12 E-value=0.012 Score=67.60 Aligned_cols=95 Identities=20% Similarity=0.315 Sum_probs=57.7
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCce-EEEEcCCCChHHHHHHHHHHhcC---CCEEEeec-hhH
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKG-VLLVGPPGTGKTLLAKAIAGEAG---VPFFSISG-SEF 300 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~g-vLL~GPpGTGKT~LArAlA~e~~---~pfi~is~-se~ 300 (703)
...+++++.-.++..+.+.+++. . |+| ++++||+|+|||++.+++..+.. ..++++.- -++
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~---~-----------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIR---R-----------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHh---c-----------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 34578887666666666665542 2 235 78999999999999998877653 33444421 111
Q ss_pred HHH-----Hhhh-hhhHHHHHHHHHHhcCCeEEEEcCccc
Q 005304 301 VEM-----FVGV-GASRVRDLFKKAKENAPCIVFVDEIDA 334 (703)
Q Consensus 301 ~~~-----~~G~-~~~~ir~lF~~A~~~aP~ILfIDEID~ 334 (703)
.-. .+.. ......+..+.+....|.||++.||-.
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 100 0000 011234556666778999999999844
No 484
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.12 E-value=0.015 Score=61.05 Aligned_cols=23 Identities=39% Similarity=0.600 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||.|||||||.|++++-+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 48899999999999999999843
No 485
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.12 E-value=0.024 Score=58.64 Aligned_cols=32 Identities=28% Similarity=0.632 Sum_probs=24.4
Q ss_pred hhccCCCCce--EEEEcCCCChHHHHHHHHHHhc
Q 005304 257 TAIGARIPKG--VLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 257 ~~lg~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 288 (703)
..+..++++| +-+.||+|||||+|.|.+.+..
T Consensus 25 d~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 25 DGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred cCceeeecCCcEEEEECCCCcCHHHHHHHHhccC
Confidence 3344555554 6788999999999999998743
No 486
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.10 E-value=0.031 Score=61.79 Aligned_cols=26 Identities=38% Similarity=0.552 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.|..+++.||.|||||++.+++...+
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 35579999999999999999997766
No 487
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.10 E-value=0.17 Score=57.47 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=47.7
Q ss_pred eeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 005304 395 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG 474 (703)
Q Consensus 395 ~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~~g 474 (703)
.+.+-.+|.++-++-|....+....... .+...+ +-.+|..+-+.....|...+-..|+..+++++++.++..
T Consensus 386 ~flv~isdeeeH~~Rf~~Ra~~~~~~r~--~~ky~~-----~f~~IR~IQdyLv~~A~~~~ipvI~n~nid~tv~~~l~~ 458 (475)
T PRK12337 386 PMLVTLPDEALHRRRFELRDRETGASRP--RERYLR-----HFEEIRLIQDHLLRLARQEGVPVLPGEDLDESIDKALEV 458 (475)
T ss_pred EEEEEECCHHHHHHHHHHHhhhccCCCc--hhHHHH-----hHHHHHHHHHHHHHHHHHcCCCeecCccHHHHHHHHHHH
Confidence 4567777888877777666655433222 222222 234566666666677777888899999999999887544
No 488
>PRK01184 hypothetical protein; Provisional
Probab=96.10 E-value=0.005 Score=60.86 Aligned_cols=29 Identities=41% Similarity=0.676 Sum_probs=25.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEe
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (703)
-|+|+||||+||||+++ ++.+.|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 48899999999999998 788999888654
No 489
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.08 E-value=0.038 Score=55.43 Aligned_cols=25 Identities=36% Similarity=0.638 Sum_probs=22.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
...+.|.||+|+|||+|.+.+++..
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3469999999999999999999875
No 490
>PF13245 AAA_19: Part of AAA domain
Probab=96.07 E-value=0.0086 Score=51.23 Aligned_cols=32 Identities=41% Similarity=0.625 Sum_probs=22.1
Q ss_pred EEEEcCCCChHH-HHHHHHHHhc------CCCEEEeech
Q 005304 267 VLLVGPPGTGKT-LLAKAIAGEA------GVPFFSISGS 298 (703)
Q Consensus 267 vLL~GPpGTGKT-~LArAlA~e~------~~pfi~is~s 298 (703)
+++.|||||||| ++++.++... +..++.++..
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 556999999999 5566665554 4556666543
No 491
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.05 E-value=0.026 Score=55.39 Aligned_cols=39 Identities=31% Similarity=0.468 Sum_probs=30.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~ 302 (703)
+.-+.|.|+||+|||++|+.++..+ +..+..++...+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~ 45 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT 45 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH
Confidence 3468999999999999999999876 44567777765543
No 492
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.04 E-value=0.006 Score=59.18 Aligned_cols=34 Identities=35% Similarity=0.630 Sum_probs=24.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
|.|+|+||||||||+++|+.. |.+++.-.+.++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~ 35 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREII 35 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHH
Confidence 789999999999999999988 8887754444444
No 493
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.01 E-value=0.0062 Score=58.98 Aligned_cols=28 Identities=39% Similarity=0.742 Sum_probs=25.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (703)
|.|+|++|+|||++|+.+|..++.|++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 7899999999999999999999988654
No 494
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.99 E-value=0.013 Score=58.71 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.|+-++|+||||+|||+|++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35679999999999999999997764
No 495
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.97 E-value=0.027 Score=57.74 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAG 286 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~ 286 (703)
+-++|+||.|+|||++.|.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 3589999999999999999964
No 496
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.97 E-value=0.029 Score=59.75 Aligned_cols=94 Identities=24% Similarity=0.455 Sum_probs=57.9
Q ss_pred Cce-EEEEcCCCChHHHHHHHHHHhcC----CCEEEe---------echhHH-HHHhhhhhhHHHHHHHHHHhcCCeEEE
Q 005304 264 PKG-VLLVGPPGTGKTLLAKAIAGEAG----VPFFSI---------SGSEFV-EMFVGVGASRVRDLFKKAKENAPCIVF 328 (703)
Q Consensus 264 p~g-vLL~GPpGTGKT~LArAlA~e~~----~pfi~i---------s~se~~-~~~~G~~~~~ir~lF~~A~~~aP~ILf 328 (703)
|+| ||.+||.|+||||...++-...+ ...+.+ |-..++ ..-+|.....+.+.++.|-...|+||+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIl 203 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVIL 203 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEE
Confidence 335 67789999999998888877654 233333 111122 122444444555666677778899999
Q ss_pred EcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 329 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 329 IDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
+-|+-.. +++..-|.. ..++-+|++|-+.
T Consensus 204 vGEmRD~----------------ETi~~ALtA-----AETGHLV~~TLHT 232 (353)
T COG2805 204 VGEMRDL----------------ETIRLALTA-----AETGHLVFGTLHT 232 (353)
T ss_pred EeccccH----------------HHHHHHHHH-----HhcCCEEEEeccc
Confidence 9998554 244444442 2456688887554
No 497
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.95 E-value=0.019 Score=68.96 Aligned_cols=97 Identities=25% Similarity=0.346 Sum_probs=55.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---C--CCEEEeechhH----HHHHhhhhhhHHHHHHHHH---------H-hcCCeE
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA---G--VPFFSISGSEF----VEMFVGVGASRVRDLFKKA---------K-ENAPCI 326 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~---~--~pfi~is~se~----~~~~~G~~~~~ir~lF~~A---------~-~~aP~I 326 (703)
-++|.|+||||||++++++...+ + .+++.+..+.- .....|..+..+..++... . .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999985533 4 45554432211 1112233333344443321 0 123579
Q ss_pred EEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005304 327 VFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (703)
Q Consensus 327 LfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (703)
|+|||+..+. ...+..|+..+ .....+++++=.+..
T Consensus 420 lIvDEaSMvd--------------~~~~~~Ll~~~---~~~~rlilvGD~~QL 455 (720)
T TIGR01448 420 LIVDESSMMD--------------TWLALSLLAAL---PDHARLLLVGDTDQL 455 (720)
T ss_pred EEEeccccCC--------------HHHHHHHHHhC---CCCCEEEEECccccc
Confidence 9999998872 22455666543 345568887755543
No 498
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=0.027 Score=66.07 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=22.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHH
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAG 286 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~ 286 (703)
+++.+.+-|+||+|.|||++|.-+-+
T Consensus 491 i~pGe~vALVGPSGsGKSTiasLL~r 516 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASLLLR 516 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 44556799999999999999999865
No 499
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.93 E-value=0.015 Score=55.31 Aligned_cols=27 Identities=37% Similarity=0.525 Sum_probs=24.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCC
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVP 291 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~p 291 (703)
.-++|.|+.|+|||+++|.+++.++.+
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 368999999999999999999998864
No 500
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.91 E-value=0.031 Score=55.10 Aligned_cols=23 Identities=48% Similarity=0.759 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||+|+|||+|++++++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999754
Done!