Query 005304
Match_columns 703
No_of_seqs 675 out of 3907
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 21:31:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 5E-85 1.7E-89 733.1 43.2 449 221-681 5-458 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 1.3E-84 4.3E-89 733.7 41.3 476 208-700 9-488 (499)
3 4b4t_J 26S protease regulatory 100.0 2.8E-53 9.6E-58 463.9 27.6 258 220-477 137-395 (405)
4 4b4t_I 26S protease regulatory 100.0 4E-54 1.4E-58 471.9 16.7 302 171-477 127-429 (437)
5 4b4t_H 26S protease regulatory 100.0 1.3E-51 4.5E-56 455.9 27.2 260 219-478 197-457 (467)
6 4b4t_L 26S protease subunit RP 100.0 1E-50 3.5E-55 449.6 28.6 255 220-474 170-425 (437)
7 4b4t_M 26S protease regulatory 100.0 4.5E-51 1.5E-55 452.0 24.9 257 219-475 169-426 (434)
8 4b4t_K 26S protease regulatory 100.0 8.6E-50 2.9E-54 441.4 28.2 255 220-474 161-417 (428)
9 2di4_A Zinc protease, cell div 100.0 8.7E-48 3E-52 392.7 13.9 200 473-683 2-203 (238)
10 3cf2_A TER ATPase, transitiona 100.0 1.1E-44 3.8E-49 426.4 10.4 231 224-454 470-701 (806)
11 3cf2_A TER ATPase, transitiona 100.0 1.4E-42 4.9E-47 408.5 26.6 351 224-589 197-577 (806)
12 1lv7_A FTSH; alpha/beta domain 100.0 1.7E-39 5.9E-44 335.0 27.3 254 222-475 3-256 (257)
13 3cf0_A Transitional endoplasmi 100.0 5.2E-38 1.8E-42 332.8 24.8 248 224-471 8-281 (301)
14 2x8a_A Nuclear valosin-contain 100.0 4E-38 1.4E-42 330.1 21.0 247 225-474 4-267 (274)
15 3h4m_A Proteasome-activating n 100.0 7.6E-37 2.6E-41 319.0 26.7 255 222-476 8-263 (285)
16 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.9E-37 1E-41 317.2 20.1 253 226-478 1-256 (262)
17 1ixz_A ATP-dependent metallopr 100.0 5.3E-36 1.8E-40 308.3 27.4 246 223-468 8-253 (254)
18 1iy2_A ATP-dependent metallopr 100.0 1.1E-35 3.8E-40 310.7 27.8 260 208-468 18-277 (278)
19 3eie_A Vacuolar protein sortin 100.0 6.4E-36 2.2E-40 319.5 22.2 228 222-455 9-239 (322)
20 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.2E-35 4.1E-40 318.1 24.1 225 224-454 5-233 (322)
21 3hu3_A Transitional endoplasmi 100.0 4.4E-35 1.5E-39 330.3 25.6 264 226-495 199-480 (489)
22 2qp9_X Vacuolar protein sortin 100.0 1.1E-34 3.7E-39 314.7 24.1 226 223-454 43-271 (355)
23 2r62_A Cell division protease 100.0 5E-37 1.7E-41 317.9 5.1 252 224-475 4-257 (268)
24 2zan_A Vacuolar protein sortin 100.0 2.7E-33 9.2E-38 312.5 23.1 227 222-454 125-355 (444)
25 3d8b_A Fidgetin-like protein 1 100.0 2E-31 6.9E-36 289.0 24.8 245 224-474 77-337 (357)
26 3b9p_A CG5977-PA, isoform A; A 100.0 9.6E-32 3.3E-36 282.3 19.6 243 223-471 13-272 (297)
27 1ypw_A Transitional endoplasmi 100.0 4E-34 1.4E-38 340.3 -3.0 233 223-455 469-702 (806)
28 3vfd_A Spastin; ATPase, microt 100.0 1.3E-30 4.6E-35 285.3 23.9 246 221-472 105-366 (389)
29 3t15_A Ribulose bisphosphate c 100.0 3.2E-31 1.1E-35 280.1 9.3 228 259-501 31-281 (293)
30 1ypw_A Transitional endoplasmi 100.0 3.8E-28 1.3E-32 289.0 27.9 248 224-474 197-462 (806)
31 2c9o_A RUVB-like 1; hexameric 99.9 4.3E-26 1.5E-30 255.0 1.1 205 225-446 31-262 (456)
32 3syl_A Protein CBBX; photosynt 99.9 1.5E-22 5E-27 213.1 16.2 224 230-465 29-280 (309)
33 3uk6_A RUVB-like 2; hexameric 99.9 2.3E-22 7.7E-27 216.8 17.6 252 226-504 39-362 (368)
34 3pfi_A Holliday junction ATP-d 99.9 5.5E-21 1.9E-25 204.0 22.5 220 220-471 18-254 (338)
35 1hqc_A RUVB; extended AAA-ATPa 99.8 4.1E-20 1.4E-24 195.4 17.9 220 224-471 5-238 (324)
36 1ofh_A ATP-dependent HSL prote 99.8 6.4E-20 2.2E-24 192.0 16.6 236 231-470 15-298 (310)
37 1d2n_A N-ethylmaleimide-sensit 99.8 1.4E-19 4.9E-24 187.7 18.5 225 229-469 31-262 (272)
38 3m6a_A ATP-dependent protease 99.8 3.2E-20 1.1E-24 211.9 11.9 225 226-470 76-340 (543)
39 3hws_A ATP-dependent CLP prote 99.8 5E-19 1.7E-23 191.5 17.0 221 232-454 16-325 (363)
40 3u61_B DNA polymerase accessor 99.8 5.2E-19 1.8E-23 187.8 16.2 210 218-470 13-236 (324)
41 1g41_A Heat shock protein HSLU 99.8 3E-20 1E-24 206.1 6.3 170 231-412 15-190 (444)
42 2v1u_A Cell division control p 99.8 1.3E-18 4.5E-23 187.0 18.2 224 228-472 16-277 (387)
43 2z4s_A Chromosomal replication 99.8 1.4E-18 4.8E-23 193.4 16.7 222 225-472 99-333 (440)
44 3pvs_A Replication-associated 99.8 3E-18 1E-22 191.1 16.4 206 224-470 19-243 (447)
45 2chg_A Replication factor C sm 99.8 1.2E-17 4E-22 164.4 18.7 206 221-469 7-224 (226)
46 1l8q_A Chromosomal replication 99.8 9.7E-18 3.3E-22 178.2 19.0 218 226-471 6-240 (324)
47 1sxj_A Activator 1 95 kDa subu 99.8 2.9E-18 1E-22 194.5 13.3 232 216-471 24-274 (516)
48 2r44_A Uncharacterized protein 99.7 1.2E-17 4E-22 178.0 16.9 215 228-475 24-301 (331)
49 1g8p_A Magnesium-chelatase 38 99.7 3E-17 1E-21 175.1 19.9 220 225-475 18-326 (350)
50 2qby_B CDC6 homolog 3, cell di 99.7 1.5E-17 5.3E-22 179.4 17.8 214 229-472 18-271 (384)
51 1njg_A DNA polymerase III subu 99.7 3E-17 1E-21 163.1 18.6 208 220-468 12-248 (250)
52 3bos_A Putative DNA replicatio 99.7 2.2E-17 7.7E-22 165.5 16.2 206 226-469 23-241 (242)
53 1in4_A RUVB, holliday junction 99.7 1.2E-16 4.1E-21 171.4 22.8 216 224-471 18-250 (334)
54 2qby_A CDC6 homolog 1, cell di 99.7 8.7E-17 3E-21 172.5 19.1 223 227-472 16-273 (386)
55 1jbk_A CLPB protein; beta barr 99.7 1.2E-17 4.1E-22 160.5 11.1 160 226-410 17-194 (195)
56 1um8_A ATP-dependent CLP prote 99.7 3.3E-17 1.1E-21 178.0 15.3 235 231-467 21-361 (376)
57 1r6b_X CLPA protein; AAA+, N-t 99.7 7.1E-17 2.4E-21 190.9 17.8 223 226-473 181-435 (758)
58 1sxj_D Activator 1 41 kDa subu 99.7 5.8E-17 2E-21 172.8 15.3 214 218-469 24-261 (353)
59 4fcw_A Chaperone protein CLPB; 99.7 6.5E-17 2.2E-21 169.9 14.2 203 231-452 17-279 (311)
60 1fnn_A CDC6P, cell division co 99.7 3.5E-16 1.2E-20 168.6 20.3 220 228-472 14-275 (389)
61 3pxg_A Negative regulator of g 99.7 7.5E-17 2.6E-21 180.9 14.4 208 224-471 173-406 (468)
62 2chq_A Replication factor C sm 99.7 1.7E-16 5.8E-21 166.5 15.5 206 220-468 6-223 (319)
63 3te6_A Regulatory protein SIR3 99.7 7.9E-17 2.7E-21 171.8 10.1 159 233-416 22-213 (318)
64 1iqp_A RFCS; clamp loader, ext 99.7 1.6E-15 5.4E-20 159.6 17.5 206 220-468 14-231 (327)
65 2p65_A Hypothetical protein PF 99.7 5E-16 1.7E-20 149.2 12.4 153 226-402 17-187 (187)
66 3pxi_A Negative regulator of g 99.7 6.3E-16 2.1E-20 183.0 15.8 191 225-455 174-389 (758)
67 1jr3_A DNA polymerase III subu 99.6 1.9E-15 6.5E-20 162.3 17.9 206 222-468 7-241 (373)
68 3pxi_A Negative regulator of g 99.6 6.8E-16 2.3E-20 182.7 15.7 198 230-451 490-724 (758)
69 1qvr_A CLPB protein; coiled co 99.6 9.7E-16 3.3E-20 183.7 16.8 204 225-454 164-395 (854)
70 1sxj_B Activator 1 37 kDa subu 99.6 1.3E-15 4.6E-20 159.9 15.9 206 221-469 11-229 (323)
71 2bjv_A PSP operon transcriptio 99.6 9.9E-16 3.4E-20 158.0 14.0 207 228-464 3-250 (265)
72 1r6b_X CLPA protein; AAA+, N-t 99.6 7.5E-16 2.6E-20 182.2 14.6 200 231-451 458-715 (758)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 6.8E-16 2.3E-20 174.2 10.8 210 231-472 22-286 (500)
74 1ojl_A Transcriptional regulat 99.6 1.3E-15 4.5E-20 161.4 10.0 201 231-465 2-246 (304)
75 1sxj_C Activator 1 40 kDa subu 99.6 1.1E-14 3.8E-19 155.9 14.5 210 220-468 14-236 (340)
76 3f9v_A Minichromosome maintena 99.6 7.3E-16 2.5E-20 177.7 3.2 219 231-471 295-587 (595)
77 1sxj_E Activator 1 40 kDa subu 99.5 3.5E-14 1.2E-18 151.9 14.7 196 220-450 3-243 (354)
78 1qvr_A CLPB protein; coiled co 99.5 1.3E-14 4.5E-19 173.9 12.1 204 230-452 557-820 (854)
79 1w5s_A Origin recognition comp 99.5 3E-13 1E-17 147.0 20.1 228 228-472 19-294 (412)
80 3co5_A Putative two-component 99.5 1.3E-14 4.5E-19 136.5 6.6 112 232-379 5-116 (143)
81 3n70_A Transport activator; si 99.5 4.5E-14 1.5E-18 133.1 8.0 112 232-379 2-116 (145)
82 3k1j_A LON protease, ATP-depen 99.4 6.3E-13 2.2E-17 153.5 15.9 220 223-470 33-374 (604)
83 3cmw_A Protein RECA, recombina 99.4 2.1E-13 7.2E-18 170.8 9.8 152 226-378 1015-1217(1706)
84 1a5t_A Delta prime, HOLB; zinc 99.3 1.1E-11 3.7E-16 132.8 16.5 159 262-447 22-208 (334)
85 3kw6_A 26S protease regulatory 99.3 4.8E-12 1.6E-16 107.2 9.4 76 399-474 1-76 (78)
86 2krk_A 26S protease regulatory 99.3 4.7E-12 1.6E-16 109.6 9.1 78 397-474 7-84 (86)
87 3vlf_B 26S protease regulatory 99.3 7.8E-12 2.7E-16 108.6 9.3 78 402-479 2-79 (88)
88 1ny5_A Transcriptional regulat 99.3 1.5E-11 5E-16 134.6 11.8 212 230-468 136-384 (387)
89 2gno_A DNA polymerase III, gam 99.3 3.2E-11 1.1E-15 127.9 13.9 142 235-414 1-152 (305)
90 3ec2_A DNA replication protein 99.2 6.4E-11 2.2E-15 114.7 12.1 134 225-379 4-143 (180)
91 4akg_A Glutathione S-transfera 99.1 2.3E-10 7.9E-15 149.2 15.6 138 264-416 1267-1433(2695)
92 3aji_B S6C, proteasome (prosom 99.1 1.8E-10 6E-15 98.6 7.4 75 402-476 2-76 (83)
93 2w58_A DNAI, primosome compone 99.1 3.1E-10 1.1E-14 111.7 9.9 103 226-335 20-127 (202)
94 2dzn_B 26S protease regulatory 99.0 1.7E-10 5.9E-15 98.6 2.8 73 404-476 1-73 (82)
95 2fna_A Conserved hypothetical 99.0 1.2E-08 4E-13 107.9 17.0 190 226-446 8-252 (357)
96 3f8t_A Predicted ATPase involv 98.9 1.3E-09 4.3E-14 121.0 9.5 213 233-473 215-485 (506)
97 2qen_A Walker-type ATPase; unk 98.9 7.2E-08 2.5E-12 101.6 22.2 192 226-446 7-248 (350)
98 3dzd_A Transcriptional regulat 98.9 2.4E-09 8.2E-14 116.3 9.8 193 231-451 129-361 (368)
99 2kjq_A DNAA-related protein; s 98.8 6.3E-09 2.2E-13 98.7 8.9 103 264-398 36-145 (149)
100 2qgz_A Helicase loader, putati 98.8 3.3E-09 1.1E-13 112.5 7.3 101 227-335 120-226 (308)
101 2vhj_A Ntpase P4, P4; non- hyd 98.8 1.2E-09 4.2E-14 116.1 4.0 121 261-386 120-242 (331)
102 2r2a_A Uncharacterized protein 98.6 2.2E-08 7.4E-13 99.8 5.8 130 264-406 5-158 (199)
103 4akg_A Glutathione S-transfera 98.6 5.4E-07 1.8E-11 118.1 19.5 165 265-451 646-840 (2695)
104 1svm_A Large T antigen; AAA+ f 98.5 5.7E-08 1.9E-12 105.9 6.3 120 259-400 164-284 (377)
105 3cmu_A Protein RECA, recombina 98.5 2.3E-07 7.7E-12 118.1 11.8 117 260-376 1423-1561(2050)
106 3vkg_A Dynein heavy chain, cyt 98.3 3.6E-06 1.2E-10 111.2 13.7 136 265-414 1305-1469(3245)
107 1jr3_D DNA polymerase III, del 98.2 8.5E-06 2.9E-10 86.8 14.0 176 263-470 17-208 (343)
108 2c9o_A RUVB-like 1; hexameric 98.2 2.3E-06 7.8E-11 95.3 9.4 127 324-471 296-437 (456)
109 1tue_A Replication protein E1; 98.0 1.4E-06 4.8E-11 87.0 2.7 29 265-293 59-87 (212)
110 3vkg_A Dynein heavy chain, cyt 98.0 2.8E-05 9.5E-10 103.0 13.9 126 265-411 605-750 (3245)
111 1ye8_A Protein THEP1, hypothet 98.0 2.7E-05 9.1E-10 75.8 10.5 28 266-293 2-29 (178)
112 2cvh_A DNA repair and recombin 98.0 1.7E-05 5.9E-10 78.0 8.9 39 261-299 17-55 (220)
113 1z6t_A APAF-1, apoptotic prote 97.9 0.00024 8.2E-09 80.9 18.5 174 228-443 121-327 (591)
114 2w0m_A SSO2452; RECA, SSPF, un 97.9 2.8E-05 9.4E-10 76.8 8.5 38 261-298 20-60 (235)
115 1u0j_A DNA replication protein 97.8 2.8E-05 9.4E-10 80.6 8.1 26 265-290 105-130 (267)
116 1n0w_A DNA repair protein RAD5 97.8 3.9E-05 1.3E-09 76.6 9.0 118 261-379 21-174 (243)
117 1xp8_A RECA protein, recombina 97.8 5.8E-05 2E-09 81.8 9.8 117 260-376 70-208 (366)
118 2ehv_A Hypothetical protein PH 97.8 0.00011 3.6E-09 73.7 11.1 128 262-400 28-207 (251)
119 2zr9_A Protein RECA, recombina 97.8 2.2E-05 7.7E-10 84.5 6.3 77 261-337 58-153 (349)
120 2z43_A DNA repair and recombin 97.8 3.9E-05 1.3E-09 81.5 7.9 116 260-376 103-255 (324)
121 3hr8_A Protein RECA; alpha and 97.7 6.6E-05 2.3E-09 81.0 9.6 115 261-375 58-194 (356)
122 3upu_A ATP-dependent DNA helic 97.7 8.3E-05 2.8E-09 82.7 9.8 67 219-297 12-82 (459)
123 3sfz_A APAF-1, apoptotic pepti 97.7 0.00055 1.9E-08 83.9 18.0 170 228-436 121-321 (1249)
124 3cmu_A Protein RECA, recombina 97.7 6.6E-05 2.3E-09 95.9 9.5 119 260-378 728-868 (2050)
125 1qhx_A CPT, protein (chloramph 97.6 0.00014 4.7E-09 69.3 8.9 40 264-303 3-42 (178)
126 1u94_A RECA protein, recombina 97.6 0.00012 4.1E-09 79.1 9.1 117 260-376 59-197 (356)
127 4a74_A DNA repair and recombin 97.6 8.6E-05 2.9E-09 73.4 7.4 38 261-298 22-68 (231)
128 1v5w_A DMC1, meiotic recombina 97.6 0.00011 3.8E-09 78.7 8.7 116 261-377 119-272 (343)
129 3lda_A DNA repair protein RAD5 97.5 0.00012 4.3E-09 80.1 7.9 118 260-378 174-327 (400)
130 2dr3_A UPF0273 protein PH0284; 97.5 0.00044 1.5E-08 68.9 10.9 39 260-298 19-60 (247)
131 2r8r_A Sensor protein; KDPD, P 97.4 0.0023 8E-08 64.6 15.4 162 266-453 8-210 (228)
132 2a5y_B CED-4; apoptosis; HET: 97.4 0.0024 8.1E-08 72.5 17.2 165 234-435 131-329 (549)
133 2orw_A Thymidine kinase; TMTK, 97.4 6.3E-05 2.1E-09 73.5 3.5 68 266-335 5-88 (184)
134 2i1q_A DNA repair and recombin 97.4 0.00017 6E-09 76.1 6.9 116 260-376 94-256 (322)
135 1pzn_A RAD51, DNA repair and r 97.4 0.00029 9.9E-09 75.7 8.7 119 260-379 127-286 (349)
136 3cmw_A Protein RECA, recombina 97.4 0.00012 4E-09 92.6 6.3 78 260-337 728-824 (1706)
137 1g41_A Heat shock protein HSLU 97.4 0.0014 4.9E-08 72.5 14.1 93 312-411 241-346 (444)
138 3io5_A Recombination and repai 97.3 0.00035 1.2E-08 74.1 8.0 110 266-375 30-168 (333)
139 1gvn_B Zeta; postsegregational 97.3 0.00059 2E-08 71.2 9.5 61 237-301 10-70 (287)
140 2b8t_A Thymidine kinase; deoxy 97.3 0.00045 1.6E-08 69.7 8.2 70 266-335 14-101 (223)
141 2zts_A Putative uncharacterize 97.3 0.001 3.4E-08 66.4 10.5 39 260-298 26-68 (251)
142 1nlf_A Regulatory protein REPA 97.2 0.00039 1.3E-08 71.8 7.2 36 264-299 30-78 (279)
143 3dm5_A SRP54, signal recogniti 97.2 0.0026 9E-08 70.4 14.1 73 263-335 99-194 (443)
144 3trf_A Shikimate kinase, SK; a 97.2 0.00019 6.4E-09 68.9 3.9 41 264-306 5-45 (185)
145 2p5t_B PEZT; postsegregational 97.2 0.0011 3.7E-08 67.6 9.3 41 261-301 29-69 (253)
146 2r6a_A DNAB helicase, replicat 97.1 0.00098 3.3E-08 74.0 9.2 39 260-298 199-241 (454)
147 2rhm_A Putative kinase; P-loop 97.1 0.00039 1.3E-08 66.9 4.8 33 262-294 3-35 (193)
148 3vaa_A Shikimate kinase, SK; s 97.1 0.00029 1E-08 68.9 3.9 38 264-303 25-62 (199)
149 1zp6_A Hypothetical protein AT 97.0 0.0005 1.7E-08 66.1 4.9 40 262-301 7-46 (191)
150 2q6t_A DNAB replication FORK h 97.0 0.0016 5.5E-08 72.1 9.2 39 260-298 196-238 (444)
151 1cr0_A DNA primase/helicase; R 97.0 0.0011 3.7E-08 68.8 7.5 38 260-297 31-72 (296)
152 3kb2_A SPBC2 prophage-derived 96.9 0.00054 1.8E-08 64.4 4.1 31 266-296 3-33 (173)
153 3bh0_A DNAB-like replicative h 96.9 0.0035 1.2E-07 66.1 10.8 39 260-298 64-105 (315)
154 2fz4_A DNA repair protein RAD2 96.9 0.0046 1.6E-07 62.4 11.3 36 266-301 110-146 (237)
155 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.0015 5.2E-08 66.8 7.7 39 264-302 4-45 (260)
156 1kag_A SKI, shikimate kinase I 96.9 0.0016 5.3E-08 61.6 7.2 36 265-302 5-40 (173)
157 2iyv_A Shikimate kinase, SK; t 96.9 0.00051 1.7E-08 65.8 3.7 36 266-303 4-39 (184)
158 3e1s_A Exodeoxyribonuclease V, 96.9 0.0012 4.2E-08 75.5 7.2 96 266-378 206-317 (574)
159 3iij_A Coilin-interacting nucl 96.9 0.0005 1.7E-08 65.8 3.4 32 264-295 11-42 (180)
160 2ius_A DNA translocase FTSK; n 96.8 0.0033 1.1E-07 70.9 10.4 75 324-411 297-374 (512)
161 1via_A Shikimate kinase; struc 96.8 0.00065 2.2E-08 64.7 3.9 35 266-302 6-40 (175)
162 1zuh_A Shikimate kinase; alpha 96.8 0.00066 2.3E-08 64.1 3.7 35 266-302 9-43 (168)
163 2iut_A DNA translocase FTSK; n 96.8 0.0038 1.3E-07 71.1 10.5 74 325-411 345-420 (574)
164 1y63_A LMAJ004144AAA protein; 96.8 0.00062 2.1E-08 65.7 3.5 31 264-294 10-41 (184)
165 1ly1_A Polynucleotide kinase; 96.8 0.0013 4.5E-08 62.2 5.8 36 264-301 2-38 (181)
166 2cdn_A Adenylate kinase; phosp 96.8 0.0008 2.7E-08 65.6 4.3 34 262-295 18-51 (201)
167 4gp7_A Metallophosphoesterase; 96.8 0.00055 1.9E-08 65.5 2.9 21 264-284 9-29 (171)
168 1qf9_A UMP/CMP kinase, protein 96.7 0.001 3.5E-08 63.5 4.4 38 263-302 5-42 (194)
169 2pez_A Bifunctional 3'-phospho 96.7 0.0014 4.9E-08 62.5 5.2 37 264-300 5-44 (179)
170 1tev_A UMP-CMP kinase; ploop, 96.7 0.001 3.5E-08 63.7 4.1 37 264-302 3-39 (196)
171 2ze6_A Isopentenyl transferase 96.7 0.001 3.5E-08 68.0 4.1 32 266-297 3-34 (253)
172 3jvv_A Twitching mobility prot 96.7 0.0019 6.5E-08 69.6 6.4 68 266-333 125-206 (356)
173 3lw7_A Adenylate kinase relate 96.7 0.0008 2.7E-08 62.9 3.0 29 266-295 3-31 (179)
174 3t61_A Gluconokinase; PSI-biol 96.6 0.0011 3.9E-08 64.6 4.2 31 264-294 18-48 (202)
175 1g5t_A COB(I)alamin adenosyltr 96.6 0.0081 2.8E-07 59.3 10.2 70 266-335 30-132 (196)
176 2vli_A Antibiotic resistance p 96.6 0.00094 3.2E-08 63.6 3.4 30 264-293 5-34 (183)
177 2c95_A Adenylate kinase 1; tra 96.6 0.001 3.4E-08 64.1 3.5 37 264-302 9-45 (196)
178 1vma_A Cell division protein F 96.6 0.0074 2.5E-07 63.6 10.3 73 261-333 101-196 (306)
179 1aky_A Adenylate kinase; ATP:A 96.6 0.0015 5E-08 64.7 4.3 37 264-302 4-40 (220)
180 1e6c_A Shikimate kinase; phosp 96.5 0.0013 4.5E-08 62.0 3.8 35 266-302 4-38 (173)
181 3cm0_A Adenylate kinase; ATP-b 96.5 0.0012 4.1E-08 63.2 3.4 35 265-301 5-39 (186)
182 1zd8_A GTP:AMP phosphotransfer 96.5 0.0011 3.9E-08 66.0 3.4 37 264-302 7-43 (227)
183 1s96_A Guanylate kinase, GMP k 96.5 0.0057 2E-07 61.2 8.5 26 264-289 16-41 (219)
184 2bwj_A Adenylate kinase 5; pho 96.5 0.0011 3.9E-08 63.9 3.2 37 264-302 12-48 (199)
185 3dl0_A Adenylate kinase; phosp 96.5 0.0013 4.4E-08 64.8 3.6 30 266-295 2-31 (216)
186 3be4_A Adenylate kinase; malar 96.5 0.0015 5.3E-08 64.6 4.1 36 265-302 6-41 (217)
187 1vt4_I APAF-1 related killer D 96.5 0.0064 2.2E-07 73.6 10.0 43 234-287 131-173 (1221)
188 2pt5_A Shikimate kinase, SK; a 96.5 0.0014 4.7E-08 61.6 3.4 35 266-302 2-36 (168)
189 3fb4_A Adenylate kinase; psych 96.5 0.0014 4.6E-08 64.5 3.5 30 266-295 2-31 (216)
190 1ukz_A Uridylate kinase; trans 96.4 0.0015 5.3E-08 63.5 3.7 37 264-302 15-51 (203)
191 1kht_A Adenylate kinase; phosp 96.4 0.0015 5E-08 62.5 3.5 25 265-289 4-28 (192)
192 3tlx_A Adenylate kinase 2; str 96.4 0.0015 5E-08 66.3 3.7 38 263-302 28-65 (243)
193 3umf_A Adenylate kinase; rossm 96.4 0.002 7E-08 64.6 4.3 39 262-302 27-65 (217)
194 1ak2_A Adenylate kinase isoenz 96.4 0.0022 7.4E-08 64.3 4.4 37 264-302 16-52 (233)
195 1jjv_A Dephospho-COA kinase; P 96.4 0.0038 1.3E-07 60.9 6.1 33 266-301 4-36 (206)
196 4eun_A Thermoresistant glucoki 96.4 0.0022 7.6E-08 62.6 4.3 35 264-300 29-63 (200)
197 1nks_A Adenylate kinase; therm 96.4 0.0021 7.3E-08 61.3 4.1 36 266-301 3-41 (194)
198 1knq_A Gluconate kinase; ALFA/ 96.4 0.0023 7.8E-08 60.7 4.3 34 265-300 9-42 (175)
199 2eyu_A Twitching motility prot 96.4 0.0015 5.2E-08 67.2 3.2 67 266-333 27-108 (261)
200 1q57_A DNA primase/helicase; d 96.3 0.0088 3E-07 67.0 9.6 39 260-298 238-280 (503)
201 2i3b_A HCR-ntpase, human cance 96.3 0.005 1.7E-07 60.3 6.6 23 266-288 3-25 (189)
202 1zak_A Adenylate kinase; ATP:A 96.3 0.0017 5.9E-08 64.3 3.3 36 264-301 5-40 (222)
203 1tf7_A KAIC; homohexamer, hexa 96.3 0.015 5E-07 65.7 11.3 109 261-379 278-417 (525)
204 3uie_A Adenylyl-sulfate kinase 96.3 0.0035 1.2E-07 61.1 5.2 37 264-300 25-64 (200)
205 3bgw_A DNAB-like replicative h 96.2 0.012 4.1E-07 65.1 9.9 39 260-298 193-234 (444)
206 2ga8_A Hypothetical 39.9 kDa p 96.2 0.00085 2.9E-08 72.2 0.4 52 235-294 3-54 (359)
207 1ex7_A Guanylate kinase; subst 96.2 0.0043 1.5E-07 60.8 5.4 24 265-288 2-25 (186)
208 3crm_A TRNA delta(2)-isopenten 96.2 0.0027 9.2E-08 67.5 4.2 35 264-298 5-39 (323)
209 2pbr_A DTMP kinase, thymidylat 96.2 0.0035 1.2E-07 60.0 4.6 31 266-296 2-35 (195)
210 2pt7_A CAG-ALFA; ATPase, prote 96.2 0.0024 8.3E-08 68.0 3.7 69 266-334 173-251 (330)
211 3kl4_A SRP54, signal recogniti 96.1 0.039 1.3E-06 60.9 13.2 73 263-335 96-191 (433)
212 1w4r_A Thymidine kinase; type 96.1 0.018 6.2E-07 56.8 9.4 69 265-335 21-103 (195)
213 1m7g_A Adenylylsulfate kinase; 96.1 0.0092 3.1E-07 58.6 7.3 38 264-301 25-66 (211)
214 2if2_A Dephospho-COA kinase; a 96.1 0.0062 2.1E-07 59.1 6.1 35 266-303 3-37 (204)
215 1e4v_A Adenylate kinase; trans 96.1 0.0033 1.1E-07 61.9 4.1 30 266-295 2-31 (214)
216 1cke_A CK, MSSA, protein (cyti 96.1 0.0034 1.2E-07 61.9 4.2 35 265-301 6-40 (227)
217 2ewv_A Twitching motility prot 96.1 0.004 1.4E-07 67.4 5.0 72 262-333 134-219 (372)
218 3sr0_A Adenylate kinase; phosp 96.1 0.0033 1.1E-07 62.5 3.9 34 266-301 2-35 (206)
219 2v54_A DTMP kinase, thymidylat 96.1 0.004 1.4E-07 60.3 4.4 33 264-296 4-37 (204)
220 1tf7_A KAIC; homohexamer, hexa 96.1 0.027 9.2E-07 63.5 11.8 111 263-382 38-188 (525)
221 2jaq_A Deoxyguanosine kinase; 96.0 0.0033 1.1E-07 60.7 3.6 29 266-294 2-30 (205)
222 2bbw_A Adenylate kinase 4, AK4 96.0 0.0041 1.4E-07 62.7 4.4 31 264-294 27-57 (246)
223 2z0h_A DTMP kinase, thymidylat 96.0 0.0049 1.7E-07 59.2 4.5 30 267-296 3-35 (197)
224 2px0_A Flagellar biosynthesis 96.0 0.022 7.5E-07 59.6 9.8 36 263-298 104-143 (296)
225 2grj_A Dephospho-COA kinase; T 96.0 0.009 3.1E-07 58.6 6.3 39 266-306 14-52 (192)
226 1uj2_A Uridine-cytidine kinase 95.9 0.0059 2E-07 61.9 5.1 38 264-301 22-67 (252)
227 3ake_A Cytidylate kinase; CMP 95.9 0.0053 1.8E-07 59.5 4.5 30 266-295 4-33 (208)
228 2xb4_A Adenylate kinase; ATP-b 95.9 0.0042 1.4E-07 61.8 3.8 34 266-301 2-35 (223)
229 1uf9_A TT1252 protein; P-loop, 95.9 0.0052 1.8E-07 59.3 4.3 37 264-303 8-44 (203)
230 2qor_A Guanylate kinase; phosp 95.8 0.0078 2.7E-07 58.8 5.2 28 262-289 10-37 (204)
231 3b6e_A Interferon-induced heli 95.8 0.034 1.2E-06 53.7 9.6 22 266-287 50-71 (216)
232 1w36_D RECD, exodeoxyribonucle 95.8 0.024 8.2E-07 65.2 9.8 22 266-287 166-187 (608)
233 2plr_A DTMP kinase, probable t 95.8 0.0078 2.7E-07 58.3 4.9 30 265-294 5-36 (213)
234 3r20_A Cytidylate kinase; stru 95.7 0.0062 2.1E-07 61.7 4.2 35 264-300 9-43 (233)
235 3tau_A Guanylate kinase, GMP k 95.7 0.0088 3E-07 58.8 5.2 26 264-289 8-33 (208)
236 2cbz_A Multidrug resistance-as 95.7 0.03 1E-06 56.5 9.2 24 265-288 32-55 (237)
237 2yvu_A Probable adenylyl-sulfa 95.7 0.011 3.6E-07 56.8 5.5 37 264-300 13-52 (186)
238 1kgd_A CASK, peripheral plasma 95.7 0.011 3.7E-07 56.8 5.4 25 264-288 5-29 (180)
239 4a1f_A DNAB helicase, replicat 95.6 0.031 1.1E-06 59.7 9.5 38 260-297 42-82 (338)
240 2wwf_A Thymidilate kinase, put 95.6 0.0031 1.1E-07 61.4 1.5 28 264-291 10-37 (212)
241 3nwj_A ATSK2; P loop, shikimat 95.6 0.0066 2.3E-07 62.1 3.8 30 266-295 50-79 (250)
242 3ney_A 55 kDa erythrocyte memb 95.6 0.015 5.2E-07 57.4 6.2 26 263-288 18-43 (197)
243 1xx6_A Thymidine kinase; NESG, 95.6 0.026 9E-07 55.3 7.8 70 265-335 9-93 (191)
244 1nn5_A Similar to deoxythymidy 95.5 0.004 1.4E-07 60.7 1.8 26 264-289 9-34 (215)
245 1ltq_A Polynucleotide kinase; 95.5 0.013 4.5E-07 60.5 5.7 37 264-302 2-39 (301)
246 3thx_B DNA mismatch repair pro 95.5 0.042 1.4E-06 66.1 10.7 108 264-383 673-800 (918)
247 3a8t_A Adenylate isopentenyltr 95.5 0.0069 2.4E-07 64.7 3.5 35 264-298 40-74 (339)
248 3c8u_A Fructokinase; YP_612366 95.4 0.021 7.1E-07 56.0 6.7 26 264-289 22-47 (208)
249 2qt1_A Nicotinamide riboside k 95.4 0.0071 2.4E-07 59.0 3.1 30 265-294 22-52 (207)
250 3gmt_A Adenylate kinase; ssgci 95.4 0.025 8.5E-07 57.2 7.2 35 266-302 10-44 (230)
251 1vht_A Dephospho-COA kinase; s 95.4 0.0098 3.3E-07 58.5 4.1 36 264-302 4-39 (218)
252 2h92_A Cytidylate kinase; ross 95.4 0.01 3.5E-07 58.3 4.2 30 265-294 4-33 (219)
253 2axn_A 6-phosphofructo-2-kinas 95.4 0.037 1.3E-06 62.5 9.2 41 264-304 35-78 (520)
254 3foz_A TRNA delta(2)-isopenten 95.3 0.0093 3.2E-07 63.0 3.9 36 263-298 9-44 (316)
255 1q3t_A Cytidylate kinase; nucl 95.3 0.012 4.2E-07 58.8 4.5 37 263-301 15-51 (236)
256 3zvl_A Bifunctional polynucleo 95.2 0.023 7.8E-07 62.3 6.8 36 263-300 257-292 (416)
257 4e22_A Cytidylate kinase; P-lo 95.2 0.013 4.6E-07 59.5 4.5 28 266-293 29-56 (252)
258 2bdt_A BH3686; alpha-beta prot 95.2 0.016 5.4E-07 55.6 4.7 35 266-301 4-38 (189)
259 2gxq_A Heat resistant RNA depe 95.2 0.078 2.7E-06 51.0 9.7 17 265-281 39-55 (207)
260 2j41_A Guanylate kinase; GMP, 95.1 0.012 4E-07 56.9 3.7 26 263-288 5-30 (207)
261 1x6v_B Bifunctional 3'-phospho 95.1 0.035 1.2E-06 64.1 8.1 37 264-300 52-91 (630)
262 1rz3_A Hypothetical protein rb 95.0 0.039 1.3E-06 53.7 7.2 37 264-300 22-61 (201)
263 3rlf_A Maltose/maltodextrin im 95.0 0.015 5E-07 63.2 4.4 23 266-288 31-53 (381)
264 3llm_A ATP-dependent RNA helic 95.0 0.1 3.4E-06 52.0 10.3 21 265-285 77-97 (235)
265 2f6r_A COA synthase, bifunctio 95.0 0.014 4.7E-07 60.5 4.0 36 264-302 75-110 (281)
266 1t6n_A Probable ATP-dependent 95.0 0.32 1.1E-05 47.3 13.7 58 228-287 14-74 (220)
267 2oap_1 GSPE-2, type II secreti 95.0 0.01 3.4E-07 67.0 3.0 69 265-333 261-343 (511)
268 4g1u_C Hemin import ATP-bindin 94.9 0.037 1.3E-06 57.0 6.9 23 266-288 39-61 (266)
269 3thx_A DNA mismatch repair pro 94.8 0.12 4E-06 62.4 11.9 22 265-286 663-684 (934)
270 3d3q_A TRNA delta(2)-isopenten 94.8 0.015 5.3E-07 62.1 3.8 32 265-296 8-39 (340)
271 3fdi_A Uncharacterized protein 94.8 0.018 6.1E-07 56.7 3.9 29 266-294 8-36 (201)
272 1lvg_A Guanylate kinase, GMP k 94.8 0.022 7.6E-07 55.6 4.6 25 264-288 4-28 (198)
273 1v43_A Sugar-binding transport 94.8 0.072 2.5E-06 57.6 9.0 22 266-287 39-60 (372)
274 3asz_A Uridine kinase; cytidin 94.8 0.015 5E-07 56.8 3.2 26 264-289 6-31 (211)
275 2qmh_A HPR kinase/phosphorylas 94.7 0.015 5.1E-07 57.7 3.2 31 264-295 34-64 (205)
276 3exa_A TRNA delta(2)-isopenten 94.7 0.018 6E-07 61.0 4.0 33 265-297 4-36 (322)
277 3fvq_A Fe(3+) IONS import ATP- 94.7 0.042 1.4E-06 59.2 7.0 23 266-288 32-54 (359)
278 2j9r_A Thymidine kinase; TK1, 94.7 0.026 8.8E-07 56.5 4.9 68 267-335 31-113 (214)
279 1p9r_A General secretion pathw 94.6 0.059 2E-06 59.2 8.1 94 227-333 143-246 (418)
280 3a00_A Guanylate kinase, GMP k 94.6 0.019 6.5E-07 55.2 3.5 24 265-288 2-25 (186)
281 3tr0_A Guanylate kinase, GMP k 94.5 0.021 7.2E-07 55.1 3.7 24 265-288 8-31 (205)
282 3lxw_A GTPase IMAP family memb 94.4 0.24 8.1E-06 50.0 11.5 23 265-287 22-44 (247)
283 3tui_C Methionine import ATP-b 94.4 0.035 1.2E-06 60.0 5.4 23 266-288 56-78 (366)
284 1wb9_A DNA mismatch repair pro 94.3 0.2 6.9E-06 59.4 12.1 24 264-287 607-630 (800)
285 1hv8_A Putative ATP-dependent 94.3 0.16 5.5E-06 52.8 10.2 33 265-297 45-82 (367)
286 1zu4_A FTSY; GTPase, signal re 94.2 0.081 2.8E-06 55.9 7.7 37 261-297 102-141 (320)
287 1c9k_A COBU, adenosylcobinamid 94.1 0.029 1E-06 54.6 3.8 32 267-299 2-33 (180)
288 3lnc_A Guanylate kinase, GMP k 94.1 0.028 9.6E-07 55.9 3.7 25 264-288 27-52 (231)
289 2xxa_A Signal recognition part 94.1 0.15 5.1E-06 56.2 9.7 72 262-333 98-193 (433)
290 1qde_A EIF4A, translation init 94.1 0.25 8.4E-06 48.2 10.4 52 227-280 13-67 (224)
291 3e70_C DPA, signal recognition 94.0 0.12 4E-06 55.0 8.5 27 262-288 127-153 (328)
292 2v3c_C SRP54, signal recogniti 94.0 0.099 3.4E-06 57.6 8.1 36 263-298 98-136 (432)
293 2yhs_A FTSY, cell division pro 94.0 0.15 5.3E-06 57.0 9.6 27 262-288 291-317 (503)
294 1ls1_A Signal recognition part 94.0 0.11 3.8E-06 54.2 8.1 73 263-335 97-192 (295)
295 3eph_A TRNA isopentenyltransfe 94.0 0.027 9.2E-07 61.6 3.4 33 264-296 2-34 (409)
296 2pl3_A Probable ATP-dependent 93.9 0.17 5.6E-06 50.1 8.9 53 227-281 24-79 (236)
297 2j37_W Signal recognition part 93.8 0.1 3.5E-06 58.7 7.9 36 262-297 99-137 (504)
298 2orv_A Thymidine kinase; TP4A 93.8 0.18 6.3E-06 50.9 9.0 90 266-378 21-125 (234)
299 1odf_A YGR205W, hypothetical 3 93.8 0.035 1.2E-06 57.9 3.9 39 262-300 29-73 (290)
300 3fe2_A Probable ATP-dependent 93.8 0.12 4E-06 51.6 7.5 18 265-282 67-84 (242)
301 2xau_A PRE-mRNA-splicing facto 93.8 0.12 4E-06 61.2 8.8 23 265-287 110-132 (773)
302 1bif_A 6-phosphofructo-2-kinas 93.8 0.15 5.1E-06 56.6 9.1 40 264-303 39-81 (469)
303 1z6g_A Guanylate kinase; struc 93.7 0.035 1.2E-06 55.1 3.5 24 265-288 24-47 (218)
304 1m8p_A Sulfate adenylyltransfe 93.7 0.11 3.8E-06 59.3 8.1 39 264-302 396-438 (573)
305 2oxc_A Probable ATP-dependent 93.7 0.2 6.8E-06 49.5 9.0 54 226-281 22-78 (230)
306 1ewq_A DNA mismatch repair pro 93.7 0.17 5.7E-06 59.8 9.7 24 264-287 576-599 (765)
307 3iuy_A Probable ATP-dependent 93.6 0.11 3.7E-06 51.2 6.8 57 224-282 15-75 (228)
308 1znw_A Guanylate kinase, GMP k 93.5 0.041 1.4E-06 53.8 3.6 24 266-289 22-45 (207)
309 3p32_A Probable GTPase RV1496/ 93.5 0.31 1.1E-05 51.9 10.8 33 265-297 80-115 (355)
310 1htw_A HI0065; nucleotide-bind 93.5 0.051 1.7E-06 51.5 4.0 23 266-288 35-57 (158)
311 1j8m_F SRP54, signal recogniti 93.4 0.11 3.7E-06 54.4 6.8 71 264-334 98-191 (297)
312 1a7j_A Phosphoribulokinase; tr 93.4 0.034 1.1E-06 58.0 2.9 36 266-301 7-45 (290)
313 3b9q_A Chloroplast SRP recepto 93.4 0.086 2.9E-06 55.3 6.0 28 261-288 97-124 (302)
314 3hdt_A Putative kinase; struct 93.4 0.041 1.4E-06 55.2 3.4 29 266-294 16-44 (223)
315 2fwr_A DNA repair protein RAD2 93.4 0.23 7.8E-06 54.4 9.8 36 266-301 110-146 (472)
316 2p6r_A Afuhel308 helicase; pro 93.4 0.17 5.9E-06 58.8 9.1 33 265-297 41-76 (702)
317 2lna_A AFG3-like protein 2; st 93.3 0.18 6.2E-06 44.1 7.0 63 92-156 14-77 (99)
318 4b3f_X DNA-binding protein smu 93.3 0.11 3.8E-06 60.0 7.4 34 266-299 207-243 (646)
319 3bor_A Human initiation factor 93.2 0.14 4.9E-06 50.8 7.1 55 226-282 28-85 (237)
320 3b60_A Lipid A export ATP-bind 93.2 0.25 8.6E-06 56.3 10.0 24 265-288 370-393 (582)
321 2jeo_A Uridine-cytidine kinase 93.2 0.051 1.7E-06 54.7 3.7 26 266-291 27-52 (245)
322 1gtv_A TMK, thymidylate kinase 93.1 0.023 8E-07 55.2 1.1 24 266-289 2-25 (214)
323 2ffh_A Protein (FFH); SRP54, s 93.1 0.32 1.1E-05 53.5 10.3 72 263-334 97-191 (425)
324 1s2m_A Putative ATP-dependent 93.1 0.31 1.1E-05 51.7 9.9 57 227-285 20-79 (400)
325 3qf4_A ABC transporter, ATP-bi 93.0 0.12 4.1E-06 59.1 7.0 24 265-288 370-393 (587)
326 2v9p_A Replication protein E1; 93.0 0.057 2E-06 56.8 3.8 27 262-288 124-150 (305)
327 2zj8_A DNA helicase, putative 92.9 0.23 7.8E-06 57.9 9.3 33 264-296 39-75 (720)
328 2gza_A Type IV secretion syste 92.9 0.094 3.2E-06 56.3 5.4 69 265-333 176-262 (361)
329 4eaq_A DTMP kinase, thymidylat 92.8 0.09 3.1E-06 52.6 5.0 31 265-295 27-59 (229)
330 3cr8_A Sulfate adenylyltranfer 92.8 0.16 5.4E-06 57.8 7.5 39 264-302 369-411 (552)
331 3tqc_A Pantothenate kinase; bi 92.8 0.2 6.9E-06 53.0 7.8 39 262-300 90-133 (321)
332 1vec_A ATP-dependent RNA helic 92.8 0.37 1.3E-05 46.2 9.2 18 265-282 41-58 (206)
333 2va8_A SSO2462, SKI2-type heli 92.8 0.22 7.5E-06 57.9 8.9 34 264-297 46-83 (715)
334 1sky_E F1-ATPase, F1-ATP synth 92.8 0.082 2.8E-06 58.8 4.9 23 266-288 153-175 (473)
335 3tqf_A HPR(Ser) kinase; transf 92.7 0.071 2.4E-06 51.7 3.8 29 264-293 16-44 (181)
336 2og2_A Putative signal recogni 92.6 0.12 4.1E-06 55.6 5.9 28 261-288 154-181 (359)
337 2z0m_A 337AA long hypothetical 92.6 0.26 9.1E-06 50.6 8.3 33 265-297 32-64 (337)
338 1xti_A Probable ATP-dependent 92.5 0.65 2.2E-05 48.8 11.5 22 265-286 46-67 (391)
339 3j16_B RLI1P; ribosome recycli 92.5 0.24 8.2E-06 56.9 8.5 23 266-288 105-127 (608)
340 2ged_A SR-beta, signal recogni 92.5 0.11 3.9E-06 49.1 4.9 25 264-288 48-72 (193)
341 3e2i_A Thymidine kinase; Zn-bi 92.4 0.13 4.3E-06 51.6 5.3 69 266-335 30-113 (219)
342 1wp9_A ATP-dependent RNA helic 92.4 0.34 1.2E-05 51.9 9.2 33 266-298 25-61 (494)
343 3qf4_B Uncharacterized ABC tra 92.4 0.31 1E-05 55.8 9.3 24 265-288 382-405 (598)
344 2o8b_B DNA mismatch repair pro 92.4 0.31 1.1E-05 59.4 9.7 21 265-285 790-810 (1022)
345 1q0u_A Bstdead; DEAD protein, 92.4 0.28 9.7E-06 47.8 7.8 18 265-282 42-59 (219)
346 4a82_A Cystic fibrosis transme 92.3 0.29 1E-05 55.7 8.9 24 265-288 368-391 (578)
347 4i1u_A Dephospho-COA kinase; s 92.3 0.15 5E-06 50.8 5.6 50 266-318 11-60 (210)
348 3vkw_A Replicase large subunit 92.0 0.26 9E-06 54.4 7.8 23 265-287 162-184 (446)
349 2ocp_A DGK, deoxyguanosine kin 92.0 0.091 3.1E-06 52.5 3.8 26 264-289 2-27 (241)
350 4f4c_A Multidrug resistance pr 92.0 0.13 4.6E-06 64.3 6.1 24 265-288 445-468 (1321)
351 1sq5_A Pantothenate kinase; P- 92.0 0.08 2.7E-06 55.4 3.5 26 264-289 80-105 (308)
352 3def_A T7I23.11 protein; chlor 92.0 0.37 1.3E-05 48.8 8.4 24 265-288 37-60 (262)
353 3i5x_A ATP-dependent RNA helic 92.0 0.34 1.2E-05 54.3 8.9 17 264-280 111-127 (563)
354 3h1t_A Type I site-specific re 91.9 0.23 7.9E-06 56.3 7.4 44 234-287 178-221 (590)
355 1p5z_B DCK, deoxycytidine kina 91.8 0.049 1.7E-06 55.3 1.5 30 264-293 24-54 (263)
356 3aez_A Pantothenate kinase; tr 91.8 0.095 3.2E-06 55.2 3.7 26 263-288 89-114 (312)
357 2gks_A Bifunctional SAT/APS ki 91.7 0.35 1.2E-05 54.8 8.5 39 264-302 372-413 (546)
358 1gm5_A RECG; helicase, replica 91.6 0.79 2.7E-05 54.2 11.7 51 238-297 372-425 (780)
359 2j0s_A ATP-dependent RNA helic 91.6 0.76 2.6E-05 48.9 10.7 56 227-284 36-94 (410)
360 3t1o_A Gliding protein MGLA; G 91.6 0.27 9.4E-06 46.1 6.5 23 266-288 16-38 (198)
361 3q72_A GTP-binding protein RAD 91.5 0.098 3.3E-06 48.0 3.2 21 266-286 4-24 (166)
362 3sqw_A ATP-dependent RNA helic 91.5 0.35 1.2E-05 54.8 8.4 57 225-281 14-77 (579)
363 1np6_A Molybdopterin-guanine d 91.5 0.11 3.8E-06 50.0 3.6 25 264-288 6-30 (174)
364 3tbk_A RIG-I helicase domain; 91.4 1.6 5.3E-05 48.1 13.4 33 266-298 21-61 (555)
365 1wrb_A DJVLGB; RNA helicase, D 91.4 0.25 8.6E-06 49.4 6.3 18 265-282 61-78 (253)
366 3tif_A Uncharacterized ABC tra 91.4 0.076 2.6E-06 53.5 2.4 24 266-289 33-56 (235)
367 4a2p_A RIG-I, retinoic acid in 91.4 1.1 3.7E-05 49.6 12.1 32 266-297 24-63 (556)
368 3eiq_A Eukaryotic initiation f 91.4 0.98 3.4E-05 47.8 11.3 19 265-283 78-96 (414)
369 3pey_A ATP-dependent RNA helic 91.3 0.46 1.6E-05 49.8 8.5 21 264-284 44-64 (395)
370 1rj9_A FTSY, signal recognitio 91.3 0.12 4E-06 54.3 3.7 26 263-288 101-126 (304)
371 3ozx_A RNAse L inhibitor; ATP 91.2 0.2 6.7E-06 56.8 5.8 103 267-382 297-449 (538)
372 3b85_A Phosphate starvation-in 91.2 0.08 2.7E-06 52.4 2.3 22 266-287 24-45 (208)
373 2onk_A Molybdate/tungstate ABC 91.2 0.093 3.2E-06 53.1 2.8 24 265-288 25-48 (240)
374 3lxx_A GTPase IMAP family memb 91.2 0.3 1E-05 48.4 6.6 23 266-288 31-53 (239)
375 2pcj_A ABC transporter, lipopr 91.1 0.073 2.5E-06 53.2 1.9 23 266-288 32-54 (224)
376 1yrb_A ATP(GTP)binding protein 90.9 0.66 2.3E-05 46.3 8.9 33 264-296 14-48 (262)
377 3kta_A Chromosome segregation 90.9 0.14 4.7E-06 48.5 3.5 24 266-289 28-51 (182)
378 1g8f_A Sulfate adenylyltransfe 90.9 0.14 4.7E-06 57.7 4.1 26 265-290 396-421 (511)
379 1xjc_A MOBB protein homolog; s 90.8 0.22 7.5E-06 47.8 4.9 32 265-296 5-39 (169)
380 4edh_A DTMP kinase, thymidylat 90.6 0.23 7.8E-06 49.3 5.0 32 265-296 7-41 (213)
381 1b0u_A Histidine permease; ABC 90.6 0.098 3.3E-06 53.6 2.4 23 266-288 34-56 (262)
382 1mv5_A LMRA, multidrug resista 90.6 0.096 3.3E-06 52.9 2.3 24 265-288 29-52 (243)
383 3l9o_A ATP-dependent RNA helic 90.6 1.6 5.4E-05 53.7 13.4 33 265-297 200-235 (1108)
384 1sgw_A Putative ABC transporte 90.5 0.1 3.5E-06 51.9 2.3 23 266-288 37-59 (214)
385 2f9l_A RAB11B, member RAS onco 90.5 0.14 4.7E-06 49.2 3.2 23 266-288 7-29 (199)
386 2qm8_A GTPase/ATPase; G protei 90.4 0.63 2.2E-05 49.3 8.6 23 266-288 57-79 (337)
387 2wsm_A Hydrogenase expression/ 90.4 0.22 7.5E-06 48.4 4.6 24 265-288 31-54 (221)
388 1oix_A RAS-related protein RAB 90.3 0.13 4.6E-06 49.1 2.9 23 266-288 31-53 (191)
389 1g6h_A High-affinity branched- 90.3 0.1 3.5E-06 53.2 2.2 23 266-288 35-57 (257)
390 4f4c_A Multidrug resistance pr 90.3 0.43 1.5E-05 59.7 8.2 22 266-287 1107-1128(1321)
391 2ghi_A Transport protein; mult 90.3 0.11 3.8E-06 53.2 2.4 24 265-288 47-70 (260)
392 2d2e_A SUFC protein; ABC-ATPas 90.2 0.12 4.1E-06 52.5 2.6 22 266-287 31-52 (250)
393 2zu0_C Probable ATP-dependent 90.2 0.13 4.5E-06 52.8 2.9 22 266-287 48-69 (267)
394 2pze_A Cystic fibrosis transme 90.2 0.1 3.5E-06 52.2 2.1 24 265-288 35-58 (229)
395 2v6i_A RNA helicase; membrane, 90.2 0.81 2.8E-05 50.0 9.4 33 265-297 3-39 (431)
396 2f7s_A C25KG, RAS-related prot 90.2 0.84 2.9E-05 44.0 8.6 22 266-287 27-48 (217)
397 3ber_A Probable ATP-dependent 90.2 0.78 2.7E-05 46.0 8.6 18 265-282 81-98 (249)
398 1lw7_A Transcriptional regulat 90.1 0.15 5.3E-06 54.4 3.5 28 264-291 170-197 (365)
399 2ixe_A Antigen peptide transpo 90.1 0.11 3.9E-06 53.4 2.4 24 266-289 47-70 (271)
400 3v9p_A DTMP kinase, thymidylat 90.1 0.19 6.5E-06 50.5 3.9 31 266-296 27-64 (227)
401 2olj_A Amino acid ABC transpor 90.1 0.12 4E-06 53.2 2.4 23 266-288 52-74 (263)
402 3gfo_A Cobalt import ATP-bindi 90.1 0.11 3.9E-06 53.7 2.3 23 266-288 36-58 (275)
403 2ff7_A Alpha-hemolysin translo 90.0 0.11 3.7E-06 52.8 2.1 23 266-288 37-59 (247)
404 1fuu_A Yeast initiation factor 90.0 0.83 2.8E-05 48.0 9.1 54 226-281 19-75 (394)
405 1ji0_A ABC transporter; ATP bi 90.0 0.11 3.8E-06 52.4 2.1 23 266-288 34-56 (240)
406 3dz8_A RAS-related protein RAB 89.9 0.77 2.6E-05 43.3 7.9 23 266-288 25-47 (191)
407 2p67_A LAO/AO transport system 89.9 0.57 1.9E-05 49.6 7.7 25 264-288 56-80 (341)
408 3ly5_A ATP-dependent RNA helic 89.9 0.45 1.5E-05 48.1 6.6 18 265-282 92-109 (262)
409 3sop_A Neuronal-specific septi 89.9 0.15 5.2E-06 52.4 3.1 23 266-288 4-26 (270)
410 1z47_A CYSA, putative ABC-tran 89.8 0.14 4.8E-06 55.0 2.8 23 266-288 43-65 (355)
411 2yz2_A Putative ABC transporte 89.7 0.13 4.4E-06 52.8 2.4 23 266-288 35-57 (266)
412 2dyk_A GTP-binding protein; GT 89.7 0.18 6.2E-06 45.8 3.1 23 266-288 3-25 (161)
413 2yyz_A Sugar ABC transporter, 89.7 0.15 5.1E-06 54.9 2.9 23 266-288 31-53 (359)
414 1vpl_A ABC transporter, ATP-bi 89.7 0.13 4.5E-06 52.5 2.4 23 266-288 43-65 (256)
415 2it1_A 362AA long hypothetical 89.6 0.15 5.1E-06 54.9 2.9 23 266-288 31-53 (362)
416 2qi9_C Vitamin B12 import ATP- 89.6 0.12 4.2E-06 52.5 2.1 24 266-289 28-51 (249)
417 3d31_A Sulfate/molybdate ABC t 89.5 0.13 4.5E-06 55.0 2.4 23 266-288 28-50 (348)
418 1g29_1 MALK, maltose transport 89.4 0.15 5.3E-06 55.0 2.8 23 266-288 31-53 (372)
419 1z2a_A RAS-related protein RAB 89.4 0.19 6.3E-06 46.0 3.0 22 266-287 7-28 (168)
420 2ihy_A ABC transporter, ATP-bi 89.4 0.13 4.4E-06 53.3 2.1 23 266-288 49-71 (279)
421 2iw3_A Elongation factor 3A; a 89.3 0.52 1.8E-05 56.9 7.6 21 266-286 463-483 (986)
422 2f1r_A Molybdopterin-guanine d 89.3 0.13 4.5E-06 49.3 2.0 23 266-288 4-26 (171)
423 2nq2_C Hypothetical ABC transp 89.3 0.13 4.5E-06 52.4 2.0 23 266-288 33-55 (253)
424 1nrj_B SR-beta, signal recogni 89.2 0.24 8.1E-06 48.0 3.7 24 265-288 13-36 (218)
425 2wji_A Ferrous iron transport 89.1 0.18 6E-06 46.8 2.6 22 266-287 5-26 (165)
426 2zej_A Dardarin, leucine-rich 89.1 0.15 5.1E-06 48.3 2.1 21 266-286 4-24 (184)
427 1kao_A RAP2A; GTP-binding prot 89.1 0.21 7.3E-06 45.3 3.1 22 266-287 5-26 (167)
428 2ce2_X GTPase HRAS; signaling 89.0 0.2 7E-06 45.3 3.0 23 266-288 5-27 (166)
429 3t34_A Dynamin-related protein 89.0 0.67 2.3E-05 49.2 7.5 26 261-287 32-57 (360)
430 2pjz_A Hypothetical protein ST 88.9 0.16 5.4E-06 52.2 2.3 23 266-288 32-54 (263)
431 2i4i_A ATP-dependent RNA helic 88.9 1.4 4.9E-05 46.7 10.0 54 226-281 13-69 (417)
432 1zd9_A ADP-ribosylation factor 88.8 0.64 2.2E-05 43.8 6.4 22 266-287 24-45 (188)
433 3tmk_A Thymidylate kinase; pho 88.8 0.38 1.3E-05 47.9 5.0 29 265-293 6-34 (216)
434 1u8z_A RAS-related protein RAL 88.7 0.23 7.9E-06 45.1 3.1 22 266-287 6-27 (168)
435 1ek0_A Protein (GTP-binding pr 88.7 0.23 7.9E-06 45.3 3.1 23 266-288 5-27 (170)
436 3dkp_A Probable ATP-dependent 88.7 0.83 2.8E-05 45.2 7.5 17 265-281 67-83 (245)
437 2db3_A ATP-dependent RNA helic 88.7 1.4 4.9E-05 47.8 10.0 53 226-280 54-109 (434)
438 2nzj_A GTP-binding protein REM 88.6 0.2 6.8E-06 46.2 2.6 22 266-287 6-27 (175)
439 1oxx_K GLCV, glucose, ABC tran 88.6 0.14 4.7E-06 55.0 1.7 23 266-288 33-55 (353)
440 2hf9_A Probable hydrogenase ni 88.6 0.45 1.5E-05 46.3 5.3 24 265-288 39-62 (226)
441 1z0j_A RAB-22, RAS-related pro 88.5 0.24 8.2E-06 45.3 3.1 23 266-288 8-30 (170)
442 2wjg_A FEOB, ferrous iron tran 88.4 0.22 7.7E-06 46.7 2.8 22 266-287 9-30 (188)
443 3gd7_A Fusion complex of cysti 88.3 0.2 6.8E-06 54.5 2.7 22 266-287 49-70 (390)
444 1fzq_A ADP-ribosylation factor 88.3 0.6 2E-05 43.9 5.8 23 265-287 17-39 (181)
445 1wms_A RAB-9, RAB9, RAS-relate 88.3 0.25 8.7E-06 45.6 3.1 22 266-287 9-30 (177)
446 1z08_A RAS-related protein RAB 88.3 0.25 8.7E-06 45.2 3.1 22 266-287 8-29 (170)
447 1g16_A RAS-related protein SEC 88.3 0.24 8.3E-06 45.2 3.0 22 266-287 5-26 (170)
448 3fmo_B ATP-dependent RNA helic 88.2 0.93 3.2E-05 47.0 7.7 18 264-281 131-148 (300)
449 2gk6_A Regulator of nonsense t 88.1 0.22 7.5E-06 57.3 3.1 33 266-298 197-233 (624)
450 1ky3_A GTP-binding protein YPT 88.1 0.26 9E-06 45.6 3.1 22 266-287 10-31 (182)
451 2erx_A GTP-binding protein DI- 88.1 0.24 8.2E-06 45.3 2.8 22 266-287 5-26 (172)
452 1r2q_A RAS-related protein RAB 88.1 0.27 9.3E-06 44.8 3.1 22 266-287 8-29 (170)
453 2www_A Methylmalonic aciduria 88.0 0.71 2.4E-05 49.1 6.8 22 266-287 76-97 (349)
454 1c1y_A RAS-related protein RAP 88.0 0.28 9.5E-06 44.7 3.1 22 266-287 5-26 (167)
455 1svi_A GTP-binding protein YSX 87.9 0.22 7.4E-06 47.1 2.4 23 265-287 24-46 (195)
456 3q85_A GTP-binding protein REM 87.9 0.24 8.1E-06 45.5 2.6 21 266-286 4-24 (169)
457 2hxs_A RAB-26, RAS-related pro 87.9 0.27 9.4E-06 45.4 3.1 22 266-287 8-29 (178)
458 3bc1_A RAS-related protein RAB 87.9 0.28 9.5E-06 45.9 3.1 23 265-287 12-34 (195)
459 2bbs_A Cystic fibrosis transme 87.9 0.19 6.6E-06 52.3 2.2 23 266-288 66-88 (290)
460 2vp4_A Deoxynucleoside kinase; 87.9 0.31 1E-05 48.4 3.6 29 265-294 21-49 (230)
461 3lv8_A DTMP kinase, thymidylat 87.9 0.29 9.8E-06 49.5 3.4 32 264-295 27-62 (236)
462 4a2q_A RIG-I, retinoic acid in 87.7 2.9 0.0001 49.2 12.5 33 265-297 264-304 (797)
463 1r8s_A ADP-ribosylation factor 87.7 0.3 1E-05 44.6 3.1 22 266-287 2-23 (164)
464 2lkc_A Translation initiation 87.7 0.33 1.1E-05 44.9 3.5 23 265-287 9-31 (178)
465 3g5u_A MCG1178, multidrug resi 87.6 1.6 5.3E-05 54.6 10.4 23 265-287 1060-1082(1284)
466 1upt_A ARL1, ADP-ribosylation 87.5 0.38 1.3E-05 44.0 3.8 23 265-287 8-30 (171)
467 3g5u_A MCG1178, multidrug resi 87.5 0.43 1.5E-05 59.6 5.3 24 265-288 417-440 (1284)
468 3fmp_B ATP-dependent RNA helic 87.5 1.6 5.5E-05 47.8 9.5 18 264-281 131-148 (479)
469 2y8e_A RAB-protein 6, GH09086P 87.5 0.29 9.9E-06 45.1 3.0 22 266-287 16-37 (179)
470 2atv_A RERG, RAS-like estrogen 87.4 0.34 1.2E-05 46.0 3.5 23 265-287 29-51 (196)
471 2oca_A DAR protein, ATP-depend 87.4 2.1 7.3E-05 47.1 10.5 32 266-297 130-165 (510)
472 3nh6_A ATP-binding cassette SU 87.4 0.19 6.6E-06 52.8 1.8 25 264-288 80-104 (306)
473 1ko7_A HPR kinase/phosphatase; 87.4 0.35 1.2E-05 51.0 3.8 28 265-293 145-172 (314)
474 1z0f_A RAB14, member RAS oncog 87.4 0.31 1.1E-05 44.9 3.1 23 266-288 17-39 (179)
475 3ch4_B Pmkase, phosphomevalona 87.4 0.56 1.9E-05 46.3 5.1 41 261-301 8-49 (202)
476 2eyq_A TRCF, transcription-rep 87.4 4.1 0.00014 50.3 13.8 52 237-297 606-660 (1151)
477 3clv_A RAB5 protein, putative; 87.3 0.31 1.1E-05 45.8 3.1 23 265-287 8-30 (208)
478 4dcu_A GTP-binding protein ENG 87.3 1 3.5E-05 49.6 7.7 21 266-286 25-45 (456)
479 3ux8_A Excinuclease ABC, A sub 87.3 0.53 1.8E-05 54.5 5.7 19 266-284 350-368 (670)
480 2gj8_A MNME, tRNA modification 87.3 0.27 9.2E-06 46.1 2.6 22 266-287 6-27 (172)
481 2xgj_A ATP-dependent RNA helic 87.3 1.6 5.6E-05 53.0 10.1 32 266-297 103-137 (1010)
482 3ld9_A DTMP kinase, thymidylat 87.3 0.36 1.2E-05 48.4 3.6 31 264-294 21-55 (223)
483 1knx_A Probable HPR(Ser) kinas 87.2 0.33 1.1E-05 51.2 3.5 28 265-293 148-175 (312)
484 3con_A GTPase NRAS; structural 87.2 0.32 1.1E-05 45.7 3.1 23 266-288 23-45 (190)
485 2xtp_A GTPase IMAP family memb 87.2 1.9 6.5E-05 43.0 9.1 23 265-287 23-45 (260)
486 4dsu_A GTPase KRAS, isoform 2B 87.1 0.32 1.1E-05 45.3 3.1 23 266-288 6-28 (189)
487 2a9k_A RAS-related protein RAL 87.1 0.33 1.1E-05 45.1 3.1 22 266-287 20-41 (187)
488 2fn4_A P23, RAS-related protei 87.1 0.31 1.1E-05 45.0 2.9 22 266-287 11-32 (181)
489 1tq4_A IIGP1, interferon-induc 87.0 0.38 1.3E-05 52.7 4.0 22 266-287 71-92 (413)
490 1m7b_A RND3/RHOE small GTP-bin 87.0 0.31 1.1E-05 45.8 3.0 22 266-287 9-30 (184)
491 2oil_A CATX-8, RAS-related pro 87.0 0.34 1.1E-05 45.8 3.2 22 266-287 27-48 (193)
492 2efe_B Small GTP-binding prote 86.9 0.34 1.2E-05 44.9 3.1 22 266-287 14-35 (181)
493 2p5s_A RAS and EF-hand domain 86.9 0.37 1.3E-05 46.0 3.4 24 264-287 28-51 (199)
494 2bme_A RAB4A, RAS-related prot 86.8 0.33 1.1E-05 45.3 3.0 22 266-287 12-33 (186)
495 4ag6_A VIRB4 ATPase, type IV s 86.8 0.57 1.9E-05 50.3 5.2 23 265-287 36-58 (392)
496 3tw8_B RAS-related protein RAB 86.7 0.32 1.1E-05 45.0 2.8 21 266-286 11-31 (181)
497 2npi_A Protein CLP1; CLP1-PCF1 86.7 0.33 1.1E-05 53.9 3.3 23 266-288 140-162 (460)
498 1pui_A ENGB, probable GTP-bind 86.6 0.17 5.8E-06 48.6 0.8 23 265-287 27-49 (210)
499 3fht_A ATP-dependent RNA helic 86.5 1.6 5.4E-05 46.1 8.5 18 264-281 64-81 (412)
500 2cxx_A Probable GTP-binding pr 86.5 0.3 1E-05 45.7 2.4 22 266-287 3-24 (190)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=5e-85 Score=733.10 Aligned_cols=449 Identities=56% Similarity=0.944 Sum_probs=388.5
Q ss_pred cccc-CCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechh
Q 005304 221 QMEP-NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (703)
Q Consensus 221 ~~~~-~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se 299 (703)
..+. .+.++|+||+|++++++++++++.+++++..|..+|.++|+|+||+||||||||++|+++|+++++||+++++++
T Consensus 5 ~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~ 84 (476)
T 2ce7_A 5 YKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSD 84 (476)
T ss_dssp CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred eccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHH
Confidence 3344 577899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005304 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (703)
Q Consensus 300 ~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (703)
+.+.+.|.+..+++.+|+.|+..+||||||||||.++.+++.+.++++++..+++++||.+||++..+.+++||++||++
T Consensus 85 ~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 85 FVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 99999999999999999999999999999999999999887766677888899999999999998888899999999999
Q ss_pred ccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCc
Q 005304 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAI 459 (703)
Q Consensus 380 ~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~I 459 (703)
+.+|++++||||||+.+.+++|+.++|.+|++.++++.++..++++..++..++|++|+||.++|++|+..|.+++...|
T Consensus 165 ~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I 244 (476)
T 2ce7_A 165 DILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKI 244 (476)
T ss_dssp GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred hhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCee
Confidence 99999999999999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCcCCcc-cccCCcchhhhHHHHHHHHHHhhcCCCCCcceeeeecCc-ccceEEEEccCCCCCcccH
Q 005304 460 SSKEIDDSIDRIVAGMEGTV-MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRG-QARGLTWFIPSDDPTLISK 537 (703)
Q Consensus 460 t~~di~~Al~~v~~g~~~~~-~~~~~~~~~va~hEaGhAlv~~~~~~~~~v~kvti~prg-~a~G~~~~~p~~~~~~~t~ 537 (703)
+.+||.+|+++++++.+++. ..++++++.++|||+|||++++++++.+++++++|+||| +++||+++.|.+|.+++||
T Consensus 245 ~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~~~~~~ 324 (476)
T 2ce7_A 245 TMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSR 324 (476)
T ss_dssp CHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------CCSCBH
T ss_pred cHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecCcccccceEEEcCcccccccCH
Confidence 99999999999998887764 456678899999999999999999999999999999999 9999999999989999999
Q ss_pred HHHHHHHHHhhchhhhhhhhcCCCCcccCccchHHHHHHHHHhhhccccccceEEeeccCC-CCcccccCCCCcchhHHh
Q 005304 538 QQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQAHYFFFFLQMVTTFGMSE-IGPWSLMDGSQSGDVIMR 616 (703)
Q Consensus 538 ~~l~~~i~~~lgGraAE~~~fg~~~~t~Ga~~Dl~~at~lA~~~~~~~~~~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~ 616 (703)
.+|+++|+++|||||||+++||+ +||||+|||++||+||+ .||++||||+ +||+.|..... ..|+++
T Consensus 325 ~~l~~~i~~~l~Gr~ae~~~~g~--~~~ga~~Dl~~at~~a~---------~mv~~~gm~~~~g~~~~~~~~~-~~~~~~ 392 (476)
T 2ce7_A 325 NELLDKLTALLGGRAAEEVVFGD--VTSGAANDIERATEIAR---------NMVCQLGMSEELGPLAWGKEEQ-EVFLGK 392 (476)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHSS--CCGGGHHHHHHHHHHHH---------HHHHTSCCCTTTCSCCCCC----------
T ss_pred HHHHHHHHHHHhHHHHHhhhcCC--CCcccHHHHHHHHHHHH---------HHHHHhCCCCcCCceeecCCCc-cccccc
Confidence 99999999999999999999994 89999999999999999 9999999998 99999876322 126643
Q ss_pred -hhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhc
Q 005304 617 -MMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 681 (703)
Q Consensus 617 -~~~~~~~s~~~~~~id~ev~~il~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~ 681 (703)
+...++||+++++.||+||++++++||++|++||++||+.|++||++|+|+|||+++||++|+++
T Consensus 393 ~~~~~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~ 458 (476)
T 2ce7_A 393 EITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE 458 (476)
T ss_dssp ----CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC-
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHhcc
Confidence 44567899999999999999999999999999999999999999999999999999999999975
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-84 Score=733.65 Aligned_cols=476 Identities=50% Similarity=0.835 Sum_probs=422.2
Q ss_pred CCcccccccccccccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005304 208 GFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 208 ~~~~~~~~s~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e 287 (703)
+..|+||+|++++..+. ++++|+||+|++++++++.+++.+++++..|..+|.++|+|+||+||||||||+||+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 9 DSAFSFTKSRARVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp ---------CCEEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCCcccCcceeeccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999988776 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCC
Q 005304 288 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (703)
Q Consensus 288 ~~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~ 367 (703)
++.+|++++++++.+.+.+....+++.+|+.++...|||+||||||.++.+++.+.++++++..+++++++.+|+++..+
T Consensus 88 ~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~ 167 (499)
T 2dhr_A 88 ARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 167 (499)
T ss_dssp TTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS
T ss_pred hCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC
Confidence 99999999999999999999999999999999888899999999999988876555556788889999999999999888
Q ss_pred CCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHH
Q 005304 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEA 447 (703)
Q Consensus 368 ~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA 447 (703)
..+++|++||+|+.||++++||||||++|.|++||.++|.+||+.|+++..+..++++..+|..++|++|+||+++|++|
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~A 247 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEA 247 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHH
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHcCcCCcc-cccCCcchhhhHHHHHHHHHHhhcCCCCCcceeeeecCcccceEEEE
Q 005304 448 AILAGRRGKAAISSKEIDDSIDRIVAGMEGTV-MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWF 526 (703)
Q Consensus 448 a~~A~r~~~~~It~~di~~Al~~v~~g~~~~~-~~~~~~~~~va~hEaGhAlv~~~~~~~~~v~kvti~prg~a~G~~~~ 526 (703)
+..|.+++...|+.+||++|++++.++.++.. ..++++++.++|||+|||++++++++.+++++++|+||++++||++
T Consensus 248 a~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~~~~g~~~- 326 (499)
T 2dhr_A 248 ALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALGFMM- 326 (499)
T ss_dssp HHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCSSCTTCSSH-
T ss_pred HHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecCCCcCcccc-
Confidence 99999988889999999999999999977654 4567788999999999999999999999999999999999999997
Q ss_pred ccC-CCCCcccHHHHHHHHHHhhchhhhhhhhcCCCCcccCccchHHHHHHHHHhhhccccccceEEeeccCC-CCcccc
Q 005304 527 IPS-DDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQAHYFFFFLQMVTTFGMSE-IGPWSL 604 (703)
Q Consensus 527 ~p~-~~~~~~t~~~l~~~i~~~lgGraAE~~~fg~~~~t~Ga~~Dl~~at~lA~~~~~~~~~~~mv~~~Gm~~-~g~~~~ 604 (703)
|. ++.+++||.+++++|+++|||||||+++|| ++||||+|||++||+||+ .||++||||+ +|++.|
T Consensus 327 -p~q~~~~~~t~~~l~~~i~~~lgGr~ae~~~~g--~~~~ga~~Dl~~at~~a~---------~mv~~~gm~~~~g~~~~ 394 (499)
T 2dhr_A 327 -PRREDMLHWSRKRLLDQIAVALAGRAAEEIVFD--DVTTGAENDFRQATELAR---------RMITEWGMHPEFGPVAY 394 (499)
T ss_dssp -HHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHSC--SCCBCCCHHHHHHHHHHH---------HHHTTSCCCSSSCSCCC
T ss_pred -cchhhhhccCHHHHHHHHHHHhhhHhHHHhhhc--ccCcccHHHHHHHHHHHH---------HHHHHhCCCCCCCceee
Confidence 76 788899999999999999999999999999 489999999999999999 9999999998 999998
Q ss_pred cCCCCcchhHHhhhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhcccC
Q 005304 605 MDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVE 684 (703)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~il~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~~~~ 684 (703)
..... .|++.+. .++||++++..||+||++++++||++|++||++||+.|++||++|+|+|||+++||++|+++...
T Consensus 395 ~~~~~--~~~~~~~-~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~~~ 471 (499)
T 2dhr_A 395 AVRED--TYLGGYD-VRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLPL 471 (499)
T ss_dssp CCCCC--CSSCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTCCC
T ss_pred cCCCc--ccccccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhccCCC
Confidence 76332 2554333 57899999999999999999999999999999999999999999999999999999999987654
Q ss_pred CC-CCCCCCCCCCCCCC
Q 005304 685 IP-AENRVPPAVPAPLS 700 (703)
Q Consensus 685 ~~-~~~~~~~~~~~~~~ 700 (703)
.+ .+..+..++|.++|
T Consensus 472 ~~~~~~~~~~~~~~~~~ 488 (499)
T 2dhr_A 472 EAPEEAREEREPPRVVP 488 (499)
T ss_dssp CCCC-------------
T ss_pred CCcchhhhccCCCCcCC
Confidence 43 33344445555544
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-53 Score=463.87 Aligned_cols=258 Identities=40% Similarity=0.717 Sum_probs=246.8
Q ss_pred cccccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeech
Q 005304 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (703)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s 298 (703)
....+.|+++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|+++++||+.++++
T Consensus 137 ~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s 216 (405)
T 4b4t_J 137 MMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGA 216 (405)
T ss_dssp CEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred ccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhH
Confidence 344567899999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 299 e~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
++.++|+|++++.++++|..|+..+||||||||||+++++|..+.++++.+...++++||.+||++....+|+||+|||+
T Consensus 217 ~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNr 296 (405)
T 4b4t_J 217 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNR 296 (405)
T ss_dssp GGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESC
T ss_pred HhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCC
Confidence 99999999999999999999999999999999999999999877666777888999999999999999999999999999
Q ss_pred cccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCC
Q 005304 379 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAA 458 (703)
Q Consensus 379 p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~ 458 (703)
|+.||||++||||||+.|+|++||.++|.+||+.|+++.++..++|+..+|..|+||||+||+++|++|++.|.++++..
T Consensus 297 pd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~ 376 (405)
T 4b4t_J 297 LDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIH 376 (405)
T ss_dssp SSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSB
T ss_pred hhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcCcCC
Q 005304 459 ISSKEIDDSIDRIVAGMEG 477 (703)
Q Consensus 459 It~~di~~Al~~v~~g~~~ 477 (703)
|+++||+.|+++++....+
T Consensus 377 vt~~Df~~Al~~v~~~~~~ 395 (405)
T 4b4t_J 377 VTQEDFELAVGKVMNKNQE 395 (405)
T ss_dssp CCHHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHhCcccc
Confidence 9999999999999876543
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-54 Score=471.93 Aligned_cols=302 Identities=34% Similarity=0.602 Sum_probs=264.1
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccCCCccccccccchHHHHHHHHHHHH-
Q 005304 171 SLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF- 249 (703)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~- 249 (703)
.+++.+...+....+..+..+++.+++...++ ..+-....+...+..+..++++|+||+|++++|++|++.+.+
T Consensus 127 ~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~-----~l~~~~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~P 201 (437)
T 4b4t_I 127 DYYVSILSFVDKELLEPGCSVLLHHKTMSIVG-----VLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELP 201 (437)
T ss_dssp CCEEECCTTSCGGGCCTTCEEEECTTTCCEEE-----EECCCSSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHH
T ss_pred EEEEecccccCHhHccCCcEEEEeccCcccee-----ecCCccCCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHH
Confidence 34444444444444455544444444433211 011112222334456678999999999999999999999987
Q ss_pred hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEE
Q 005304 250 LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFV 329 (703)
Q Consensus 250 l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfI 329 (703)
+++|+.|..+|.++|+|||||||||||||++|+|+|++++++|+.++++++.++|+|++++.++.+|..|+..+||||||
T Consensus 202 l~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfi 281 (437)
T 4b4t_I 202 LTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFI 281 (437)
T ss_dssp HHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHH
Q 005304 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEI 409 (703)
Q Consensus 330 DEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~I 409 (703)
||||+++.+|..+...++.+...++++||.+||++..+.+|+||+|||+|+.|||||+||||||++|+|++||.++|.+|
T Consensus 282 DEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~I 361 (437)
T 4b4t_I 282 DEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKI 361 (437)
T ss_dssp EEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHH
T ss_pred ehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHH
Confidence 99999999998776667778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCcCC
Q 005304 410 LKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEG 477 (703)
Q Consensus 410 L~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~~g~~~ 477 (703)
|+.|+++..+..++|++.||..|+||||+||+++|++|++.|.++++..|+++||.+|++++..+..+
T Consensus 362 l~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~~~ 429 (437)
T 4b4t_I 362 LGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVE 429 (437)
T ss_dssp HHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999998876543
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-51 Score=455.88 Aligned_cols=260 Identities=40% Similarity=0.715 Sum_probs=248.0
Q ss_pred ccccccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeec
Q 005304 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (703)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (703)
.+..+..|+++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|||||||||||||++|+|+|++++++|+.+++
T Consensus 197 ~m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~ 276 (467)
T 4b4t_H 197 MMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIG 276 (467)
T ss_dssp CCEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred eeeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEh
Confidence 3456678899999999999999999999887 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005304 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (703)
Q Consensus 298 se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (703)
+++.++|+|.+++.++.+|..|+..+||||||||+|+++.+|+....+.......+++++|.+||++....+|+||+|||
T Consensus 277 s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATN 356 (467)
T 4b4t_H 277 SELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATN 356 (467)
T ss_dssp GGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECS
T ss_pred HHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCC
Confidence 99999999999999999999999999999999999999999987666666778889999999999999999999999999
Q ss_pred CcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCC
Q 005304 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA 457 (703)
Q Consensus 378 ~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~ 457 (703)
+|+.||+|++||||||++|+|++||.++|.+||+.|+++..+..++|++.||+.|+||||+||+++|++|++.|.++++.
T Consensus 357 rpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~ 436 (467)
T 4b4t_H 357 RPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK 436 (467)
T ss_dssp CTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred CcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHcCcCCc
Q 005304 458 AISSKEIDDSIDRIVAGMEGT 478 (703)
Q Consensus 458 ~It~~di~~Al~~v~~g~~~~ 478 (703)
.|+++||.+|+++++.+.++.
T Consensus 437 ~it~~Df~~Al~kV~~g~~k~ 457 (467)
T 4b4t_H 437 VATEKDFLKAVDKVISGYKKF 457 (467)
T ss_dssp SBCHHHHHHHHHHHHHHHCC-
T ss_pred ccCHHHHHHHHHHHhcCcccc
Confidence 999999999999999887654
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-50 Score=449.55 Aligned_cols=255 Identities=40% Similarity=0.681 Sum_probs=244.1
Q ss_pred cccccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeech
Q 005304 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (703)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s 298 (703)
+.....++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.++++
T Consensus 170 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s 249 (437)
T 4b4t_L 170 MTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS 249 (437)
T ss_dssp CEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred eeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh
Confidence 344567899999999999999999999987 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 299 e~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
++.++|+|.++..++.+|..|+.++||||||||||+++.+|..+....+.+...++++||.+||++....+|+||+|||+
T Consensus 250 ~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNr 329 (437)
T 4b4t_L 250 GIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNR 329 (437)
T ss_dssp GTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESS
T ss_pred hhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCC
Confidence 99999999999999999999999999999999999999999776666677788899999999999999999999999999
Q ss_pred cccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCC
Q 005304 379 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAA 458 (703)
Q Consensus 379 p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~ 458 (703)
|+.|||||+||||||+.|+|++||.++|.+||+.|+++.++..++|+..+|..|+||||+||.++|++|++.|.++++..
T Consensus 330 p~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~ 409 (437)
T 4b4t_L 330 PDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDH 409 (437)
T ss_dssp TTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred chhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcC
Q 005304 459 ISSKEIDDSIDRIVAG 474 (703)
Q Consensus 459 It~~di~~Al~~v~~g 474 (703)
|+.+||.+|++++...
T Consensus 410 i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 410 INPDDLMKAVRKVAEV 425 (437)
T ss_dssp BCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999998764
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-51 Score=452.04 Aligned_cols=257 Identities=37% Similarity=0.689 Sum_probs=244.0
Q ss_pred ccccccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeec
Q 005304 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (703)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (703)
.+..+..++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|+++++||+.+++
T Consensus 169 ~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~ 248 (434)
T 4b4t_M 169 AMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAA 248 (434)
T ss_dssp CCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred hcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence 3445677899999999999999999997765 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005304 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (703)
Q Consensus 298 se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (703)
+++.++|+|.+++.++.+|..|+..+||||||||||+++.+|..+.+++..+...++++||.+||++..+.+|+||+|||
T Consensus 249 s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTN 328 (434)
T 4b4t_M 249 PQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATN 328 (434)
T ss_dssp GGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECS
T ss_pred hhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999987666667778889999999999999999999999999
Q ss_pred CcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCC
Q 005304 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA 457 (703)
Q Consensus 378 ~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~ 457 (703)
+|+.||||++||||||+.|+|++||.++|.+||+.|+++..+..++|+..||+.|+||||+||+++|++|++.|.++++.
T Consensus 329 rp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~ 408 (434)
T 4b4t_M 329 RVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQS 408 (434)
T ss_dssp SCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred CchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHcCc
Q 005304 458 AISSKEIDDSIDRIVAGM 475 (703)
Q Consensus 458 ~It~~di~~Al~~v~~g~ 475 (703)
.|+.+||.+|++++.+..
T Consensus 409 ~i~~~Df~~Al~~v~~~~ 426 (434)
T 4b4t_M 409 SVKHEDFVEGISEVQARK 426 (434)
T ss_dssp SBCHHHHHHHHHSCSSSC
T ss_pred CcCHHHHHHHHHHHhCCC
Confidence 999999999999876543
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-50 Score=441.38 Aligned_cols=255 Identities=40% Similarity=0.673 Sum_probs=243.1
Q ss_pred cccccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeech
Q 005304 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (703)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s 298 (703)
+..+..++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.++++
T Consensus 161 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~ 240 (428)
T 4b4t_K 161 MGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240 (428)
T ss_dssp CEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG
T ss_pred ccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecc
Confidence 445677899999999999999999998876 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 299 e~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
++.++|+|.++..++++|..|+.++||||||||+|+++.+|.....+++.+..+++++||.+||++....+|+||+|||+
T Consensus 241 ~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~ 320 (428)
T 4b4t_K 241 EFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNR 320 (428)
T ss_dssp GTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESC
T ss_pred hhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999877666777888999999999999999999999999999
Q ss_pred cccccccccCCCccceeeeec-CCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCC
Q 005304 379 ADILDSALLRPGRFDRQVTVD-VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA 457 (703)
Q Consensus 379 p~~LD~aLlRpgRfdr~I~i~-~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~ 457 (703)
|+.||||++||||||+.|+|+ +|+.++|..||+.|+++.++..++|++.+|..|+||||+||.++|++|++.|.++++.
T Consensus 321 ~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~ 400 (428)
T 4b4t_K 321 ADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRY 400 (428)
T ss_dssp SSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999996 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHcC
Q 005304 458 AISSKEIDDSIDRIVAG 474 (703)
Q Consensus 458 ~It~~di~~Al~~v~~g 474 (703)
.|+++||++|+.+++..
T Consensus 401 ~i~~~d~~~A~~~~~~~ 417 (428)
T 4b4t_K 401 VILQSDLEEAYATQVKT 417 (428)
T ss_dssp SBCHHHHHHHHHHHSCS
T ss_pred CCCHHHHHHHHHHhhCc
Confidence 99999999999886543
No 9
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=8.7e-48 Score=392.73 Aligned_cols=200 Identities=37% Similarity=0.594 Sum_probs=159.9
Q ss_pred cCcCCcc-cccCCcchhhhHHHHHHHHHHhhcCCCCCcceeeeecCcccceEEEEccCCCCCcccHHHHHHHHHHhhchh
Q 005304 473 AGMEGTV-MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGR 551 (703)
Q Consensus 473 ~g~~~~~-~~~~~~~~~va~hEaGhAlv~~~~~~~~~v~kvti~prg~a~G~~~~~p~~~~~~~t~~~l~~~i~~~lgGr 551 (703)
+|.++++ ..++++|+++||||+||||+++++++.+||+||||+|||+++|||++.|.+|.+++||.+|+++|+++||||
T Consensus 2 ~G~ekk~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG~alG~t~~~P~ed~~~~tk~~l~~~i~v~LgGR 81 (238)
T 2di4_A 2 QGPLGSHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLLGGR 81 (238)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC----------------CCCCBHHHHHHHHHHHHHHH
T ss_pred CCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeecCCcceEEEeCCcccccccCHHHHHHHHHHHHhHH
Confidence 5666654 568889999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred hhhhhhcCCCCcccCccchHHHHHHHHHhhhccccccceEEeeccCC-CCcccccCCCCcchhHHhhhhccccCHHHHHH
Q 005304 552 AAEEVIFGEPEVTTGAAGDLQQITGLAKQAHYFFFFLQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAED 630 (703)
Q Consensus 552 aAE~~~fg~~~~t~Ga~~Dl~~at~lA~~~~~~~~~~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 630 (703)
|||+++||.+++||||+|||++||+||+ .||++||||+ +||+.|....+ .|++.+...++||++|++.
T Consensus 82 aAEelifG~g~vttGA~~Dl~~AT~iAr---------~MV~~~GMs~~lG~v~~~~~~~--~flg~~~~~~~~Se~ta~~ 150 (238)
T 2di4_A 82 AAEEVFFGKDGITTGAENDLQRATDLAY---------RMVSMWGMSDKVGPIAIRRVAN--PFLGGMTTAVDTSPDLLRE 150 (238)
T ss_dssp HHHHHHHHHHHCCGGGHHHHHHHHHHHH---------HHHHTSCCCTTTCSCCCCC------------CCCSCCHHHHHH
T ss_pred HHHHHHhCCCCcccChHhHHHHHHHHHH---------HHHHHhCCCCCCCceeecCCcc--ccccccccccccCHHHHHH
Confidence 9999999655699999999999999999 9999999998 99999976332 4666444568999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhccc
Q 005304 631 IDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFV 683 (703)
Q Consensus 631 id~ev~~il~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~~~ 683 (703)
||.||++|+++||++|++||++||+.|++||++||++|||+++||.+|++.++
T Consensus 151 iD~Ev~~il~~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~~ 203 (238)
T 2di4_A 151 IDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYG 203 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999999999998764
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.1e-44 Score=426.37 Aligned_cols=231 Identities=42% Similarity=0.783 Sum_probs=187.6
Q ss_pred cCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
..++++|+|++|++++|++|.+.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|++++.||+.++++++.+
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 45789999999999999999999987 79999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005304 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (703)
Q Consensus 303 ~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (703)
+|+|++++.++.+|+.|++.+||||||||||+++++|+...+.++....+++++||.+||++....+|+||+|||+|+.|
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~l 629 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSS
T ss_pred cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhC
Confidence 99999999999999999999999999999999999997655555667788999999999999999999999999999999
Q ss_pred cccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005304 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (703)
Q Consensus 383 D~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~ 454 (703)
|+|++||||||++|+|++||.++|.+||+.++++.++..++|++.||+.|+||||+||.++|++|++.|.++
T Consensus 630 D~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~ 701 (806)
T 3cf2_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp CHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHH
T ss_pred CHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999886
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.4e-42 Score=408.46 Aligned_cols=351 Identities=34% Similarity=0.547 Sum_probs=276.4
Q ss_pred cCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
..+.++|+||+|+++++++|++.+.+ +++|+.|..+|.++|+|||||||||||||+|||++|++++++|+.++|+++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 34689999999999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005304 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (703)
Q Consensus 303 ~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (703)
+|.|.++..++.+|+.|++++||||||||||+++++|+.. ..+....++++|+.+||++..+.+|+||+|||+++.|
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~---~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC---CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC---CChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 9999999999999999999999999999999999988653 2345578999999999999999999999999999999
Q ss_pred cccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC-------
Q 005304 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG------- 455 (703)
Q Consensus 383 D~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~------- 455 (703)
|++|+||||||+.|++++||..+|.+||+.|+++..+..++|+..+|..|+||+|+||.++|++|++.|.++.
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred ----------CCCcCHHHHHHHHHHHHcCcCCcccc---cCCcchhhhHHHHHHHHHHhhcC---CCCCcceeeeecCcc
Q 005304 456 ----------KAAISSKEIDDSIDRIVAGMEGTVMT---DGKSKSLVAYHEVGHAICGTLTP---GHDPVQKVTLVPRGQ 519 (703)
Q Consensus 456 ----------~~~It~~di~~Al~~v~~g~~~~~~~---~~~~~~~va~hEaGhAlv~~~~~---~~~~v~kvti~prg~ 519 (703)
...|+.+||..|+..+.+...+.... .-....+..+.++...+...+.. ..+...+..+.|+
T Consensus 434 ~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~-- 511 (806)
T 3cf2_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPS-- 511 (806)
T ss_dssp CCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCC--
T ss_pred ccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCC--
Confidence 13478899999998877655443321 11223344566666666544332 2222223333332
Q ss_pred cceEEEEccCCCCCcccHHHHHHHHHHhhchh-----hhhhhhcCCCCcccCc-cchHHHHHHHHHhhhccccccc
Q 005304 520 ARGLTWFIPSDDPTLISKQQLFARIVGGLGGR-----AAEEVIFGEPEVTTGA-AGDLQQITGLAKQAHYFFFFLQ 589 (703)
Q Consensus 520 a~G~~~~~p~~~~~~~t~~~l~~~i~~~lgGr-----aAE~~~fg~~~~t~Ga-~~Dl~~at~lA~~~~~~~~~~~ 589 (703)
.|+..+-|+... |..+-..|+..++.. .+ +++ +. ..|- ..-+.+..+.|+...+|+.++.
T Consensus 512 -~gvLl~GPPGtG----KT~lAkaiA~e~~~~f~~v~~~-~l~-s~---~vGese~~vr~lF~~Ar~~~P~IifiD 577 (806)
T 3cf2_A 512 -KGVLFYGPPGCG----KTLLAKAIANECQANFISIKGP-ELL-TM---WFGESEANVREIFDKARQAAPCVLFFD 577 (806)
T ss_dssp -SCCEEESSTTSS----HHHHHHHHHHTTTCEEEECCHH-HHH-TT---TCSSCHHHHHHHHHHHHTTCSEEEECS
T ss_pred -ceEEEecCCCCC----chHHHHHHHHHhCCceEEeccc-hhh-cc---ccchHHHHHHHHHHHHHHcCCceeech
Confidence 355555554322 444444444433321 11 111 10 1121 2347777777877667666553
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=1.7e-39 Score=334.96 Aligned_cols=254 Identities=67% Similarity=1.095 Sum_probs=233.2
Q ss_pred cccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
.+..++.+|+||+|.+++++++.+++.++.++..|..+|...|++++|+||||||||++|+++|++++.|++.++++++.
T Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 3 TEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (257)
T ss_dssp EECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred CccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccc
Q 005304 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (703)
Q Consensus 302 ~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 381 (703)
+.+.|.+...++.+|+.+....||++||||+|.++..+....+++..+....+++++..++++..+.+++||++||.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ 162 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV 162 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTT
T ss_pred HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchh
Confidence 88889999999999999998899999999999999887765555667777899999999999888889999999999999
Q ss_pred ccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCH
Q 005304 382 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISS 461 (703)
Q Consensus 382 LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~ 461 (703)
+|++++|+|||++.+.+++|+.++|.+|++.+++..++.++.++..++..++||+++||.++|++|+..|.+++...|+.
T Consensus 163 l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~ 242 (257)
T 1lv7_A 163 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSM 242 (257)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred CCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccH
Confidence 99999999999999999999999999999999998888888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCc
Q 005304 462 KEIDDSIDRIVAGM 475 (703)
Q Consensus 462 ~di~~Al~~v~~g~ 475 (703)
+|+++|++++..|.
T Consensus 243 ~~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 243 VEFEKAKDKIMMGL 256 (257)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999987764
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=5.2e-38 Score=332.81 Aligned_cols=248 Identities=40% Similarity=0.742 Sum_probs=223.3
Q ss_pred cCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
..++++|+||+|++++++++.+.+.+ +.+|+.|..+|..+++++||+||||||||++|+++|++++.+|+.++|+++.+
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 45678999999999999999999886 89999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005304 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (703)
Q Consensus 303 ~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (703)
.+.|.....++.+|+.++...||||||||||.+...++...+.........+++||..|+++....+++||+|||+++.+
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 99999999999999999999999999999999987765433222334456789999999998888899999999999999
Q ss_pred cccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC------
Q 005304 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK------ 456 (703)
Q Consensus 383 D~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~------ 456 (703)
|++++|||||++.+++++|+.++|.+|++.++++..+..++++..++..+.||+|+||.++|++|+..|.++..
T Consensus 168 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~ 247 (301)
T 3cf0_A 168 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 247 (301)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999988888889999999999999999999999999999876421
Q ss_pred -------------------CCcCHHHHHHHHHHH
Q 005304 457 -------------------AAISSKEIDDSIDRI 471 (703)
Q Consensus 457 -------------------~~It~~di~~Al~~v 471 (703)
..|+.+||.+|+.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 281 (301)
T 3cf0_A 248 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFA 281 (301)
T ss_dssp ------------------CCCBCHHHHHHHHTTC
T ss_pred hhhcccccccccccccccCCccCHHHHHHHHHHc
Confidence 357778888887654
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=4e-38 Score=330.08 Aligned_cols=247 Identities=40% Similarity=0.730 Sum_probs=209.3
Q ss_pred CCCccccccccchHHHHHHHHHH-HHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH
Q 005304 225 NTGVTFDDVAGVDEAKQDFMEVV-EFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (703)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v-~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~ 303 (703)
.++++|+||+|.+++|++|.+.+ ..+.+++.|..++..+|+|++|+||||||||+|++++|++++.+++.+++.++.+.
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 46789999999999999999855 56899999999999999999999999999999999999999999999999999888
Q ss_pred HhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccccc
Q 005304 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (703)
Q Consensus 304 ~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 383 (703)
+.+.....++.+|+.++...||++|+||+|.++..++.. ........+++++.+|++......++++++||+|+.||
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~---~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR---ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 160 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC---cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC
Confidence 888888999999999988999999999999997665431 11223457899999999998888999999999999999
Q ss_pred ccccCCCccceeeeecCCChhhHHHHHHHHhcC---CCCCccccHHHHHHhCC--CCcHHHHHHHHHHHHHHHHHh----
Q 005304 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN---KKFDADVSLDVIAMRTP--GFSGADLANLLNEAAILAGRR---- 454 (703)
Q Consensus 384 ~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~---~~l~~dvdl~~lA~~t~--G~sgadL~~lv~eAa~~A~r~---- 454 (703)
++++||||||+.|++++|+.++|.+||+.++++ ..+..++++..+|..+. ||||+||.++|++|++.|.++
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999864 34567889999999754 999999999999999999875
Q ss_pred -------CCCCcCHHHHHHHHHHHHcC
Q 005304 455 -------GKAAISSKEIDDSIDRIVAG 474 (703)
Q Consensus 455 -------~~~~It~~di~~Al~~v~~g 474 (703)
+...|+++||++|++++.+.
T Consensus 241 ~~~~~~~~~~~i~~~df~~al~~~~ps 267 (274)
T 2x8a_A 241 QKSGNEKGELKVSHKHFEEAFKKVRSS 267 (274)
T ss_dssp ---------CCBCHHHHHHHHTTCCCC
T ss_pred ccccccccCCeecHHHHHHHHHHhcCC
Confidence 23479999999999876554
No 15
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=7.6e-37 Score=318.97 Aligned_cols=255 Identities=46% Similarity=0.774 Sum_probs=237.5
Q ss_pred cccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhH
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~ 300 (703)
....++++|+|++|++++++++.+.+.. +..++.|..+|...++++||+||||||||++|+++|++++.+++.++++++
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 87 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence 3456788999999999999999998876 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcc
Q 005304 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (703)
Q Consensus 301 ~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 380 (703)
...+.|.....++.+|..++...|+||||||+|.+..++.....++..+....+..++..++++..+.+++||+|||.++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD 167 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGG
T ss_pred HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCch
Confidence 99999999999999999999999999999999999888776655566777889999999999888888999999999999
Q ss_pred cccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcC
Q 005304 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAIS 460 (703)
Q Consensus 381 ~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It 460 (703)
.+|++++|++||++.+.++.|+.++|.+|++.+++...+..+.++..++..+.|++++||.++|++|...|.+++...|+
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~ 247 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVT 247 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCC
Confidence 99999999999999999999999999999999999888888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcC
Q 005304 461 SKEIDDSIDRIVAGME 476 (703)
Q Consensus 461 ~~di~~Al~~v~~g~~ 476 (703)
.+|+.+|+.++.....
T Consensus 248 ~~d~~~al~~~~~~~~ 263 (285)
T 3h4m_A 248 MDDFRKAVEKIMEKKK 263 (285)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999876543
No 16
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=2.9e-37 Score=317.17 Aligned_cols=253 Identities=53% Similarity=0.885 Sum_probs=205.2
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHh
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~ 305 (703)
++++|+||+|++++++.+++++.++..++.|..+|...|+++||+||||||||++|+++|++++.+++.++|+++.+.+.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCC-CCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccc
Q 005304 306 GVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG-GGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (703)
Q Consensus 306 G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~-~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 384 (703)
+.+...++.+|+.+....|+||||||+|.+..++..... ..+.+....+++++..+++.....+++||++||.++.+|+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 888899999999999999999999999999876643221 1234556788999999998877789999999999999999
Q ss_pred cccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCcccc--HHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHH
Q 005304 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS--LDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSK 462 (703)
Q Consensus 385 aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvd--l~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~ 462 (703)
+++|+|||++.+++++|+.++|.+|++.++....+..+.+ ...++..+.|++++||.++|++|+..|.+++...|+.+
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~ 240 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTL 240 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBC
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 9999999999999999999999999999988776654433 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcCCc
Q 005304 463 EIDDSIDRIVAGMEGT 478 (703)
Q Consensus 463 di~~Al~~v~~g~~~~ 478 (703)
|+.+|++++..+..++
T Consensus 241 d~~~a~~~~~~~~~~~ 256 (262)
T 2qz4_A 241 NFEYAVERVLAGTAKK 256 (262)
T ss_dssp CHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccChhhh
Confidence 9999999998776554
No 17
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=5.3e-36 Score=308.35 Aligned_cols=246 Identities=67% Similarity=1.114 Sum_probs=222.1
Q ss_pred ccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
...+.++|+|++|.++++.++++++..+.++..+...+..+|+|++|+||||||||++++++|+..+.+++.+++.++.+
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 34577899999999999999999999998888999999999999999999999999999999999999999999999988
Q ss_pred HHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005304 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (703)
Q Consensus 303 ~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (703)
.+.+.....++.+|+.+....|+++||||+|.++..+..+.+...++..+.+++++.+|++......++++++||.|+.+
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhC
Confidence 88888888899999999878899999999999987765433344567778899999999998887789999999999999
Q ss_pred cccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHH
Q 005304 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSK 462 (703)
Q Consensus 383 D~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~ 462 (703)
|++++|++||++.++++.|+.++|.+|++.++++..+..++++..++..++|++++||.++|++|+..|.+++...|+.+
T Consensus 168 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~ 247 (254)
T 1ixz_A 168 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMK 247 (254)
T ss_dssp CGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHH
Confidence 99999999999999999999999999999999888888888999999999999999999999999999999988899999
Q ss_pred HHHHHH
Q 005304 463 EIDDSI 468 (703)
Q Consensus 463 di~~Al 468 (703)
|+++|+
T Consensus 248 dl~~a~ 253 (254)
T 1ixz_A 248 DLEEAA 253 (254)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999875
No 18
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=1.1e-35 Score=310.71 Aligned_cols=260 Identities=64% Similarity=1.075 Sum_probs=225.6
Q ss_pred CCcccccccccccccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005304 208 GFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 208 ~~~~~~~~s~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e 287 (703)
+..+.+.++...+.. ..++++|+|++|.+++++++.+++..+.++..+...+..+|+|++|+||||||||+|++++++.
T Consensus 18 ~~~~~~~~~~~~~~~-~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 18 DSAFSFTKSRARVLT-EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp --------CCCCCBC-CCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccccccccccccc-CCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 345566666655443 3478999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCC
Q 005304 288 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (703)
Q Consensus 288 ~~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~ 367 (703)
.+.+++.+++.++.+.+.+.....++.+|+.+....|+++|+||+|.++..+..+.+...++..+.+++++.++++....
T Consensus 97 ~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 97 ARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp TTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred cCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 99999999999998888888888899999999888899999999999987665433334566788899999999998877
Q ss_pred CCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHH
Q 005304 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEA 447 (703)
Q Consensus 368 ~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA 447 (703)
..++++++||.|+.+|++++|++||++.++++.|+.++|.+||+.+++...+..++++..++..++|++++||+++|++|
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a 256 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEA 256 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999888888888999999999999999999999999
Q ss_pred HHHHHHhCCCCcCHHHHHHHH
Q 005304 448 AILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 448 a~~A~r~~~~~It~~di~~Al 468 (703)
+..|.+++...|+.+|+++|+
T Consensus 257 ~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 257 ALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHhCCCCcCHHHHHHHh
Confidence 999999888899999999885
No 19
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=6.4e-36 Score=319.50 Aligned_cols=228 Identities=35% Similarity=0.626 Sum_probs=201.3
Q ss_pred cccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhH
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~ 300 (703)
....++++|+||+|++++|+.|.+.+.+ +..|+.|.. +..+++++|||||||||||++|+++|++++.+|+.++++++
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l 87 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 87 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence 3467789999999999999999998865 677777665 56778999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc-CCCCeEEEEecCCc
Q 005304 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-GNTGIIVIAATNRA 379 (703)
Q Consensus 301 ~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~-~~~~ViVIaaTN~p 379 (703)
...+.|.....++.+|..++...|+||||||||.+..+++.+ .........++++..++++. ...+++||+|||++
T Consensus 88 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~ 164 (322)
T 3eie_A 88 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 164 (322)
T ss_dssp HTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCG
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhccccccCCceEEEEecCCh
Confidence 999999999999999999999999999999999998777543 23345667889999999885 46689999999999
Q ss_pred ccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 005304 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 455 (703)
Q Consensus 380 ~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~ 455 (703)
+.||++++| ||++.+++++|+.++|.+|++.++.+.... .+.++..++..+.||+++||.++|++|+..|.++.
T Consensus 165 ~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~ 239 (322)
T 3eie_A 165 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 239 (322)
T ss_dssp GGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHH
T ss_pred hhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999887654 56789999999999999999999999999998763
No 20
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=318.11 Aligned_cols=225 Identities=36% Similarity=0.626 Sum_probs=203.5
Q ss_pred cCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-CCCEEEeechhHH
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEFV 301 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-~~pfi~is~se~~ 301 (703)
..++++|+||+|++++|+.|++.+.+ +++|+.|.. +..+|+++|||||||||||++|+++|+++ +.+|+.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 45689999999999999999998875 788888763 35678999999999999999999999999 8999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccC-CCCeEEEEecCCcc
Q 005304 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRAD 380 (703)
Q Consensus 302 ~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~-~~~ViVIaaTN~p~ 380 (703)
..+.|.....++.+|..++...||||||||||.+..++... ........+++|+.+|+++.. ..+++||+|||+|+
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 99999999999999999999999999999999998877653 344567889999999999863 67899999999999
Q ss_pred cccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005304 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (703)
Q Consensus 381 ~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~ 454 (703)
.+|++++| ||++.+++++|+.++|.+|++.++++.+.. .+.++..|++.|.||+|+||.++|++|++.|.++
T Consensus 161 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp TSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999887654 5678999999999999999999999999999875
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=4.4e-35 Score=330.32 Aligned_cols=264 Identities=40% Similarity=0.670 Sum_probs=231.0
Q ss_pred CCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHH
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~ 304 (703)
+.++|++|+|.+++++++.+.+.. +++++.|..+|...|+++||+||||||||++|+++|++++.||++++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 567899999999999999999887 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccc
Q 005304 305 VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (703)
Q Consensus 305 ~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 384 (703)
.|.....++.+|+.|....||||||||||.+..++... ..+....++++|+..|++.....+++||+|||+++.||+
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~---~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC---CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc---cchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCH
Confidence 99999999999999999999999999999998876542 345567788999999999888889999999999999999
Q ss_pred cccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCC-------
Q 005304 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA------- 457 (703)
Q Consensus 385 aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~------- 457 (703)
+++|+|||++.+++++|+.++|.+||+.+++...+..+.++..++..+.||+++||.++|++|+..|.++...
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999998888899999999999999999999999999999987643
Q ss_pred ----------CcCHHHHHHHHHHHHcCcCCcccccCCcchhhhHHHHH
Q 005304 458 ----------AISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVG 495 (703)
Q Consensus 458 ----------~It~~di~~Al~~v~~g~~~~~~~~~~~~~~va~hEaG 495 (703)
.|+++||.+|+.++.+...+.... +...+.|.++|
T Consensus 436 ~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~---e~p~v~W~dig 480 (489)
T 3hu3_A 436 TIDAEVMNSLAVTMDDFRWALSQSNPSALRETVV---EVPQVTWEDIG 480 (489)
T ss_dssp SCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC--------------
T ss_pred ccchhhcccCcCCHHHHHHHHHhCCchhhhcccc---cCCCCCHHHcC
Confidence 478999999998877655444322 23346677776
No 22
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.1e-34 Score=314.71 Aligned_cols=226 Identities=35% Similarity=0.632 Sum_probs=194.8
Q ss_pred ccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
...++++|+||+|++++++.|.+.+.+ ++.|+.|.. +..+++++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 456789999999999999999998865 688888776 667889999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccC-CCCeEEEEecCCcc
Q 005304 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRAD 380 (703)
Q Consensus 302 ~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~-~~~ViVIaaTN~p~ 380 (703)
..+.|.....++.+|..++...||||||||||.+...++.+ .......++++|+..|+++.. ..+++||++||+++
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 198 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc
Confidence 99999999999999999999999999999999998776542 344567788999999998754 56899999999999
Q ss_pred cccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005304 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (703)
Q Consensus 381 ~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~ 454 (703)
.||++++| ||++.+++++|+.++|.+||+.++...+.. .+.++..|+..+.||+|+||.++|++|++.|.++
T Consensus 199 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 199 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp GSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999887653 5678999999999999999999999999999876
No 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=5e-37 Score=317.87 Aligned_cols=252 Identities=61% Similarity=1.012 Sum_probs=220.9
Q ss_pred cCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~ 303 (703)
..++++|+|++|.+++++.+.+++.++..++.|..+|...|+++||+||||||||++|+++|++++.||+.++++++.+.
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCC-CCCCChHHHHHHHHHHhhhcCccCC-CCeEEEEecCCccc
Q 005304 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTG-IGGGNDEREQTLNQLLTEMDGFEGN-TGIIVIAATNRADI 381 (703)
Q Consensus 304 ~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~-~~~~~~e~~~~l~~LL~~ld~~~~~-~~ViVIaaTN~p~~ 381 (703)
+.|.+...++.+|+.+....|+||||||+|.+..++..+ ....+.+..+.+++|+..+++.... .+++||+|||.++.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 888888888899999999999999999999998765321 1122333445678899999877543 45999999999999
Q ss_pred ccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCH
Q 005304 382 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISS 461 (703)
Q Consensus 382 LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~ 461 (703)
+|++++|+|||+..+++++|+.++|.+||+.++++..+..+.++..++..+.|++|+||.++|++|+..|.+++...|+.
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~ 243 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQ 243 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCH
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCH
Confidence 99999999999999999999999999999999998887788888999999999999999999999999998888889999
Q ss_pred HHHHHHHHHHHcCc
Q 005304 462 KEIDDSIDRIVAGM 475 (703)
Q Consensus 462 ~di~~Al~~v~~g~ 475 (703)
+|+.+|+.++.+..
T Consensus 244 ~~~~~a~~~~~~~~ 257 (268)
T 2r62_A 244 QHLKEAVERGIAGL 257 (268)
T ss_dssp HHHHTSCTTCCCCC
T ss_pred HHHHHHHHHHhhcc
Confidence 99999887654443
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2.7e-33 Score=312.49 Aligned_cols=227 Identities=35% Similarity=0.624 Sum_probs=194.3
Q ss_pred cccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-CCCEEEeechh
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSE 299 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-~~pfi~is~se 299 (703)
....++++|+||+|++++++.|.+.+.+ ++.|..|.. +..+++++||+||||||||++|+++|+++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 3456789999999999999999998764 777777663 35678999999999999999999999999 89999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccC-CCCeEEEEecCC
Q 005304 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNR 378 (703)
Q Consensus 300 ~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~-~~~ViVIaaTN~ 378 (703)
+...+.|.....++.+|..++...||||||||||.+..++... .......++++||..|+++.. ..+++||+|||+
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 9999999999999999999999999999999999998777543 344566789999999998763 578999999999
Q ss_pred cccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005304 379 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (703)
Q Consensus 379 p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~ 454 (703)
++.+|++++| ||++.+.+++|+.++|..|++.++.+.+.. .+.++..|+..+.||||+||.++|++|+..|.++
T Consensus 281 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 281 PWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred ccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999887653 5678999999999999999999999999999875
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.98 E-value=2e-31 Score=289.02 Aligned_cols=245 Identities=33% Similarity=0.579 Sum_probs=210.5
Q ss_pred cCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
..++++|+||+|++++++.+.+.+.+ +..++.|...+ ..++++||+||||||||++|+++|.+++.+|+.++|+++..
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 44678999999999999999998876 77787776654 67899999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccC--CCCeEEEEecCCcc
Q 005304 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--NTGIIVIAATNRAD 380 (703)
Q Consensus 303 ~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~--~~~ViVIaaTN~p~ 380 (703)
.+.|.....++.+|..+....|+||||||||.+..++..+ .+......+++|+..+++... ..+++||+|||.++
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG---EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC---cchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 9999999999999999999999999999999998766432 344566788899999998653 46799999999999
Q ss_pred cccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC----
Q 005304 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG---- 455 (703)
Q Consensus 381 ~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~---- 455 (703)
.+|++++| ||+..+++++|+.++|.+|++.++...... .+.++..++..+.||+++||.++|++|...+.++-
T Consensus 233 ~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~ 310 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTAD 310 (357)
T ss_dssp GBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC--
T ss_pred hCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999 999999999999999999999998765433 34568899999999999999999999999998743
Q ss_pred --------CCCcCHHHHHHHHHHHHcC
Q 005304 456 --------KAAISSKEIDDSIDRIVAG 474 (703)
Q Consensus 456 --------~~~It~~di~~Al~~v~~g 474 (703)
...|+.+||..|+.++.+.
T Consensus 311 ~~~~~~~~~~~i~~~d~~~al~~~~ps 337 (357)
T 3d8b_A 311 IATITPDQVRPIAYIDFENAFRTVRPS 337 (357)
T ss_dssp --------CCCBCHHHHHHHHHHHGGG
T ss_pred hccccccccCCcCHHHHHHHHHhcCCC
Confidence 3579999999999987654
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.98 E-value=9.6e-32 Score=282.29 Aligned_cols=243 Identities=38% Similarity=0.595 Sum_probs=206.1
Q ss_pred ccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
.+.++++|+|++|++++++.+.+.+.. +.+++.|..++ .+++++||+||||||||++|+++|++++.+|+.++|+++.
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 456788999999999999999998865 66777776554 4678999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCC---CCeEEEEecCC
Q 005304 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN---TGIIVIAATNR 378 (703)
Q Consensus 302 ~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~---~~ViVIaaTN~ 378 (703)
..+.+.+...++.+|..+....|+||||||+|.+...+.... .+......+.|+..+++.... .+++||++||.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE---HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR 168 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC------CEEEEEEESC
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc---chHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC
Confidence 888888889999999999999999999999999987765422 222355677888888877553 57999999999
Q ss_pred cccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC-
Q 005304 379 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK- 456 (703)
Q Consensus 379 p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~- 456 (703)
++.+|++++| ||+..+.+++|+.++|..|++.++...... .+.++..++..+.|++++||.++|++|+..|.++..
T Consensus 169 ~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~ 246 (297)
T 3b9p_A 169 PQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNV 246 (297)
T ss_dssp GGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-
T ss_pred hhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 999999999999999999999998765432 345688999999999999999999999999988742
Q ss_pred -----------CCcCHHHHHHHHHHH
Q 005304 457 -----------AAISSKEIDDSIDRI 471 (703)
Q Consensus 457 -----------~~It~~di~~Al~~v 471 (703)
..|+.+||..|+.++
T Consensus 247 ~~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 247 EQVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp -------CCCCCCCCHHHHHHHTTSC
T ss_pred hhcccccccccCCcCHHHHHHHHHHc
Confidence 579999999998754
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=4e-34 Score=340.35 Aligned_cols=233 Identities=42% Similarity=0.774 Sum_probs=206.6
Q ss_pred ccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
...+.++|+|++|++++|+.+.+.+.+ +.++..|..++..+++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 469 ~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 345688999999999999999998876 6778888899999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccc
Q 005304 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (703)
Q Consensus 302 ~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 381 (703)
+.|+|.....++.+|+.++...||||||||||.++..++...+........++++||.+||++....+++||+|||+++.
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ 628 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGG
T ss_pred hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCccc
Confidence 99999999999999999999999999999999998877643332334567899999999999988889999999999999
Q ss_pred ccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 005304 382 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 455 (703)
Q Consensus 382 LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~ 455 (703)
||++++|||||++.|++++|+.++|.+||+.++++.++..++++..++..+.|||++||.++|++|+..|.++.
T Consensus 629 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988889999999999999999999999999999998875
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=1.3e-30 Score=285.34 Aligned_cols=246 Identities=37% Similarity=0.589 Sum_probs=201.0
Q ss_pred ccccCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechh
Q 005304 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (703)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se 299 (703)
+....++++|+||+|++++++.+.+.+.. +..++.|...+ .+++++||+||||||||++|+++|.+++.+|+.++|++
T Consensus 105 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~ 183 (389)
T 3vfd_A 105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS 183 (389)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC
T ss_pred hhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH
Confidence 34456788999999999999999998865 56677666665 45789999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccC--CCCeEEEEecC
Q 005304 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--NTGIIVIAATN 377 (703)
Q Consensus 300 ~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~--~~~ViVIaaTN 377 (703)
+...+.|.....++.+|..++...|+||||||||.++..+..+ ........++.|+..+++... ..+++||++||
T Consensus 184 l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn 260 (389)
T 3vfd_A 184 LTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG---EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATN 260 (389)
T ss_dssp C-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC-----CEEEEEEES
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc---cchHHHHHHHHHHHHhhcccccCCCCEEEEEecC
Confidence 9999999999999999999999999999999999998766432 233456778889999987764 45799999999
Q ss_pred CcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh--
Q 005304 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR-- 454 (703)
Q Consensus 378 ~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~-- 454 (703)
+++.+|++++| ||+..++++.|+.++|.+|++.++...... .+.++..++..+.|+++++|.++|++|...+.++
T Consensus 261 ~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 261 RPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp CGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSC
T ss_pred CchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999 999999999999999999999998775433 3446889999999999999999999999999887
Q ss_pred ----------CCCCcCHHHHHHHHHHHH
Q 005304 455 ----------GKAAISSKEIDDSIDRIV 472 (703)
Q Consensus 455 ----------~~~~It~~di~~Al~~v~ 472 (703)
....|+.+||..++.++.
T Consensus 339 ~~~~~~~~~~~~~~i~~~d~~~al~~~~ 366 (389)
T 3vfd_A 339 PEQVKNMSASEMRNIRLSDFTESLKKIK 366 (389)
T ss_dssp CC---CCSSSCCCCCCHHHHHHHHHHCC
T ss_pred hhhhhccchhhcCCcCHHHHHHHHHHcC
Confidence 345789999999998653
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.97 E-value=3.2e-31 Score=280.07 Aligned_cols=228 Identities=17% Similarity=0.250 Sum_probs=160.6
Q ss_pred ccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhhHHHHHHHHH----HhcCCeEEEEcCccc
Q 005304 259 IGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKA----KENAPCIVFVDEIDA 334 (703)
Q Consensus 259 lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~~ir~lF~~A----~~~aP~ILfIDEID~ 334 (703)
.+.+.|+++|||||||||||++|+++|++++.+|++++|+++.+.+.|.....++.+|+.| +...||||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 4678899999999999999999999999999999999999999999999999999999999 577899999999999
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHhhhcCcc-----------CCCCeEEEEecCCcccccccccCCCccceeeeecCCCh
Q 005304 335 VGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDI 403 (703)
Q Consensus 335 L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~-----------~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~ 403 (703)
++++++.. .........+.+.|+..||+.. ...+++||+|||+++.+|++++|||||++.++ .|+.
T Consensus 111 ~~~~~~~~-~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~ 187 (293)
T 3t15_A 111 GAGRMGGT-TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 187 (293)
T ss_dssp --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCH
T ss_pred hcCCCCCC-ccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCH
Confidence 98754321 1112233456677777776332 45679999999999999999999999998886 5799
Q ss_pred hhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHH-------HHHHHHHHH-hCCCCcCHHHHHHHHHHHHcCc
Q 005304 404 RGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLL-------NEAAILAGR-RGKAAISSKEIDDSIDRIVAGM 475 (703)
Q Consensus 404 ~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv-------~eAa~~A~r-~~~~~It~~di~~Al~~v~~g~ 475 (703)
++|.+|++.++.. .+++.+.++..+.||++++|..+. .++.....+ .+... +. .+++...
T Consensus 188 ~~r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~~g~~~-----~~---~~~~~~~ 255 (293)
T 3t15_A 188 EDRIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEK-----IG---DKLLNSF 255 (293)
T ss_dssp HHHHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHTCSTT-----CH---HHHTSCS
T ss_pred HHHHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHhCHHH-----HH---HHHHcCC
Confidence 9999999988764 356688999999999999886431 111111111 11111 11 1222222
Q ss_pred CCcccccCCcchhhhHHHHHHHHHHh
Q 005304 476 EGTVMTDGKSKSLVAYHEVGHAICGT 501 (703)
Q Consensus 476 ~~~~~~~~~~~~~va~hEaGhAlv~~ 501 (703)
.......+......++||+||++++.
T Consensus 256 ~~~~~~~~~~~~~~~l~~~g~~~~~e 281 (293)
T 3t15_A 256 DGPPTFEQPKMTIEKLLEYGNMLVQE 281 (293)
T ss_dssp SCSCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHH
Confidence 22223344567788999999999864
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=3.8e-28 Score=288.99 Aligned_cols=248 Identities=42% Similarity=0.689 Sum_probs=224.1
Q ss_pred cCCCccccccccchHHHHHHHHHHHH-hcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
..++++|+||+|++++++.+.+.+.. +.+|+.|..++..+++++||+||||||||++|+++|++++.+++.++|.++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 34678999999999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005304 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (703)
Q Consensus 303 ~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (703)
.+.+.....++.+|+.+....|+++||||||.+..+++.. ..+.....+++|+..+++...+.++++|++||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC---CSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc---cchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 8999999999999999999999999999999998776532 2445567888999999999888899999999999999
Q ss_pred cccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCC-----
Q 005304 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA----- 457 (703)
Q Consensus 383 D~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~----- 457 (703)
|+++.++|||++.+.++.|+.++|.+|++.++.+..+..+.++..++..+.|++++|+..++++|+..+.++...
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~ 433 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchh
Confidence 999999999999999999999999999999999998888889999999999999999999999999988776432
Q ss_pred ------------CcCHHHHHHHHHHHHcC
Q 005304 458 ------------AISSKEIDDSIDRIVAG 474 (703)
Q Consensus 458 ------------~It~~di~~Al~~v~~g 474 (703)
.++.+|+..++......
T Consensus 434 ~~~~~~~~~~~~~v~~~d~~~al~~~~~s 462 (806)
T 1ypw_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp HHHCCHHHHTTCCCCTTHHHHHHHHSCCC
T ss_pred hhccchhhhhhhhhhhhhhhccccccCch
Confidence 35667777777765443
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.91 E-value=4.3e-26 Score=255.01 Aligned_cols=205 Identities=25% Similarity=0.353 Sum_probs=145.7
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcC--CCEEEeechhHHH
Q 005304 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVE 302 (703)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~se~~~ 302 (703)
.+...|++++|++++++.+.+++..++. |..+|+++||+||||||||++|+++|++++ ++|+.++++++..
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 3456799999999999999999877654 445678999999999999999999999999 9999999999999
Q ss_pred HHhhhhhhHHHHHHHHH---HhcCCeEEEEcCcccccccCCCCCCCCChH-HH---------------HHHHHHHhhhc-
Q 005304 303 MFVGVGASRVRDLFKKA---KENAPCIVFVDEIDAVGRQRGTGIGGGNDE-RE---------------QTLNQLLTEMD- 362 (703)
Q Consensus 303 ~~~G~~~~~ir~lF~~A---~~~aP~ILfIDEID~L~~~r~~~~~~~~~e-~~---------------~~l~~LL~~ld- 362 (703)
.+.|.+.. ++++|+.| +...||||||||+|.++.+|+....++... .. ...++++..++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999887 99999999 788899999999999998886532211110 01 11233444444
Q ss_pred -CccCCCCeEEEEecCCcccccccccCCCccce--eeeecCCC--hhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcH
Q 005304 363 -GFEGNTGIIVIAATNRADILDSALLRPGRFDR--QVTVDVPD--IRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 437 (703)
Q Consensus 363 -~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr--~I~i~~Pd--~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sg 437 (703)
+......++|++|||+++.+|++++||||||+ .+.++.|+ .++|.+|++.+.. .|++.++..+.| |
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--g 253 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--G 253 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--h
Confidence 33334446666999999999999999999999 66777774 4778888776542 268899999999 9
Q ss_pred HHHHHHHHH
Q 005304 438 ADLANLLNE 446 (703)
Q Consensus 438 adL~~lv~e 446 (703)
+||.++|+.
T Consensus 254 adl~~l~~~ 262 (456)
T 2c9o_A 254 QDILSMMGQ 262 (456)
T ss_dssp ---------
T ss_pred hHHHHHHhh
Confidence 999999965
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.88 E-value=1.5e-22 Score=213.06 Aligned_cols=224 Identities=18% Similarity=0.269 Sum_probs=172.2
Q ss_pred cc-ccccchHHHHHHHHHHHHhcCchhhhhccCCC---CceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEeech
Q 005304 230 FD-DVAGVDEAKQDFMEVVEFLKKPERFTAIGARI---PKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGS 298 (703)
Q Consensus 230 f~-dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~---p~gvLL~GPpGTGKT~LArAlA~e~-------~~pfi~is~s 298 (703)
++ +|+|++++++.+.+++..+..+..+...|... +.++||+||||||||++|+++|+.+ ..++++++++
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 44 79999999999999999877677777776554 3479999999999999999999987 3499999999
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 299 e~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
++...+.|.....++.+|+.+ .++||||||+|.+...+.. .+.....++.|+..++.. ..+++||++||.
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~-----~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~ 178 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMENN--RDDLVVILAGYA 178 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC--------CCTHHHHHHHHHHHHHC--TTTCEEEEEECH
T ss_pred HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc-----ccccHHHHHHHHHHHhcC--CCCEEEEEeCCh
Confidence 999888898888888999887 4689999999999755432 222455777788877743 456899999986
Q ss_pred cc-----cccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCcc-ccHHHHHHh-------CCCCcHHHHHHHHH
Q 005304 379 AD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMR-------TPGFSGADLANLLN 445 (703)
Q Consensus 379 p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~lA~~-------t~G~sgadL~~lv~ 445 (703)
++ .++|+|++ ||+..++|+.|+.+++.+|++.++......-+ ..+..++.. ....+++++.++++
T Consensus 179 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~ 256 (309)
T 3syl_A 179 DRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALD 256 (309)
T ss_dssp HHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHH
Confidence 54 35799999 99999999999999999999999876544322 224455554 33346899999999
Q ss_pred HHHHHHHHh----CCCCcCHHHHH
Q 005304 446 EAAILAGRR----GKAAISSKEID 465 (703)
Q Consensus 446 eAa~~A~r~----~~~~It~~di~ 465 (703)
.|...+..+ ....++.+++.
T Consensus 257 ~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 257 RARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCHHHHh
Confidence 998766554 33456665554
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.88 E-value=2.3e-22 Score=216.79 Aligned_cols=252 Identities=19% Similarity=0.273 Sum_probs=168.7
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcC--CCEEEeechhHHHH
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEM 303 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~se~~~~ 303 (703)
+..+|++++|++++++.+..+...+... ..+++++||+||||||||++|+++|++++ .||+.++|..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~~~-------~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIREG-------KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHTT-------CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHHHcC-------CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 4456999999999999988888776653 23457999999999999999999999987 48999998763321
Q ss_pred H-------------------------------------------------hhhhhhHHHHHHHHHHh---------cCCe
Q 005304 304 F-------------------------------------------------VGVGASRVRDLFKKAKE---------NAPC 325 (703)
Q Consensus 304 ~-------------------------------------------------~G~~~~~ir~lF~~A~~---------~aP~ 325 (703)
+ .|.....++..|..+.. ..|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 1 12224456666665533 1278
Q ss_pred EEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec-----------CCcccccccccCCCccce
Q 005304 326 IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT-----------NRADILDSALLRPGRFDR 394 (703)
Q Consensus 326 ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaT-----------N~p~~LD~aLlRpgRfdr 394 (703)
||||||+|.+. ...++.|+..++... ..++++++. |.++.+++++++ ||..
T Consensus 192 vl~IDEi~~l~--------------~~~~~~L~~~le~~~--~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~ 253 (368)
T 3uk6_A 192 VLFIDEVHMLD--------------IESFSFLNRALESDM--APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI 253 (368)
T ss_dssp EEEEESGGGSB--------------HHHHHHHHHHTTCTT--CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE
T ss_pred eEEEhhccccC--------------hHHHHHHHHHhhCcC--CCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE
Confidence 99999999982 234556666665432 245555543 357789999999 9975
Q ss_pred eeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 005304 395 QVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVA 473 (703)
Q Consensus 395 ~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~~ 473 (703)
+.+++|+.+++.+|++.++...... ++..+..++..+.+.+++++.++++.|...|..++...|+.+|+.+++..+..
T Consensus 254 -i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~ 332 (368)
T 3uk6_A 254 -VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLD 332 (368)
T ss_dssp -EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBC
T ss_pred -EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC
Confidence 8999999999999999887654332 22347788888875689999999999999999999999999999999986432
Q ss_pred CcCCcccccCCcchhhhHHHHHHHHHHhhcC
Q 005304 474 GMEGTVMTDGKSKSLVAYHEVGHAICGTLTP 504 (703)
Q Consensus 474 g~~~~~~~~~~~~~~va~hEaGhAlv~~~~~ 504 (703)
.......... .....-++|.++--...-+.
T Consensus 333 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 362 (368)
T 3uk6_A 333 ESRSTQYMKE-YQDAFLFNELKGETMDTSLE 362 (368)
T ss_dssp HHHHHHHHC----------------------
T ss_pred HHHHHHHHHH-hhhhhhhhcCCccccccchh
Confidence 2211112222 22234467766655444333
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.87 E-value=5.5e-21 Score=203.96 Aligned_cols=220 Identities=20% Similarity=0.241 Sum_probs=168.4
Q ss_pred cccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechh
Q 005304 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (703)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se 299 (703)
.+.++..+.+|++++|.+++++.+.+.+...+.+ ...+.++||+||||||||++|+++|++++.+|+.++|+.
T Consensus 18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~ 90 (338)
T 3pfi_A 18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPM 90 (338)
T ss_dssp -----CCCCSGGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchh
Confidence 3445666779999999999999999988765422 234568999999999999999999999999999999976
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccC-------------
Q 005304 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG------------- 366 (703)
Q Consensus 300 ~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~------------- 366 (703)
+. ....+...+.. ...+++|||||||.+. .. ..+.|+..++....
T Consensus 91 ~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~-----------~~---~~~~Ll~~l~~~~~~~~~~~~~~~~~~ 148 (338)
T 3pfi_A 91 IE------KSGDLAAILTN--LSEGDILFIDEIHRLS-----------PA---IEEVLYPAMEDYRLDIIIGSGPAAQTI 148 (338)
T ss_dssp CC------SHHHHHHHHHT--CCTTCEEEEETGGGCC-----------HH---HHHHHHHHHHTSCC---------CCCC
T ss_pred cc------chhHHHHHHHh--ccCCCEEEEechhhcC-----------HH---HHHHHHHHHHhccchhhcccCccccce
Confidence 53 22234444433 2457899999999982 22 34444544443220
Q ss_pred ---CCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHH
Q 005304 367 ---NTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLAN 442 (703)
Q Consensus 367 ---~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~ 442 (703)
..++++|++||....++++|++ ||+..+.+++|+.+++..+++.++...... .+..+..++..+.| +++++.+
T Consensus 149 ~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~ 225 (338)
T 3pfi_A 149 KIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALR 225 (338)
T ss_dssp CCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHH
T ss_pred ecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHH
Confidence 1148999999999999999999 999999999999999999999888765533 22336778886665 6899999
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 005304 443 LLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (703)
Q Consensus 443 lv~eAa~~A~r~~~~~It~~di~~Al~~v 471 (703)
+++.+...|...+...|+.+++..++...
T Consensus 226 ~l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 226 LLKRVRDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHHh
Confidence 99999988888888899999999988763
No 35
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.83 E-value=4.1e-20 Score=195.44 Aligned_cols=220 Identities=22% Similarity=0.275 Sum_probs=164.2
Q ss_pred cCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~ 303 (703)
+..+.+|++++|.+++++.+.+.+...... ...+.++||+||||||||++|++++++++.+|+.++|+.+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~- 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK- 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence 345668999999999999999888765321 134568999999999999999999999999999999876532
Q ss_pred HhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc-----Ccc--------CCCCe
Q 005304 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD-----GFE--------GNTGI 370 (703)
Q Consensus 304 ~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld-----~~~--------~~~~V 370 (703)
...+...|..+ ...+++|||||+|.+. ...+..+..++.... +.. ...++
T Consensus 77 -----~~~l~~~l~~~-~~~~~~l~lDEi~~l~-----------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 77 -----PGDLAAILANS-LEEGDILFIDEIHRLS-----------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp -----HHHHHHHHTTT-CCTTCEEEETTTTSCC-----------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred -----hHHHHHHHHHh-ccCCCEEEEECCcccc-----------cchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 11222223221 1457899999999982 223333333333221 000 11358
Q ss_pred EEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHH
Q 005304 371 IVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAI 449 (703)
Q Consensus 371 iVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~ 449 (703)
++|++||.++.+++++++ ||+..+.+++|+.+++..+++.++...... .+..+..++..+.| +++++.++++.+..
T Consensus 140 ~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRD 216 (324)
T ss_dssp EEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTT
T ss_pred EEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 999999999999999998 998899999999999999999988754433 22336788888865 68999999999988
Q ss_pred HHHHhCCCCcCHHHHHHHHHHH
Q 005304 450 LAGRRGKAAISSKEIDDSIDRI 471 (703)
Q Consensus 450 ~A~r~~~~~It~~di~~Al~~v 471 (703)
.|...+...|+.+++..++...
T Consensus 217 ~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 217 FAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp TSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHh
Confidence 8877777889999999888754
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.82 E-value=6.4e-20 Score=192.04 Aligned_cols=236 Identities=23% Similarity=0.347 Sum_probs=163.0
Q ss_pred cccccchHHHHHHHHHHHH-hcCchhhhhc-cCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH-HHhhh
Q 005304 231 DDVAGVDEAKQDFMEVVEF-LKKPERFTAI-GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVGV 307 (703)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~-l~~p~~~~~l-g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~-~~~G~ 307 (703)
++|+|++++++.+...+.. +........+ +...|.++||+||||||||++|+++|+.++.+++.++|+++.+ .+.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 4699999999999887754 2222111111 1245779999999999999999999999999999999998875 45554
Q ss_pred h-hhHHHHHHHHH-----HhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc--------CCCCeEEE
Q 005304 308 G-ASRVRDLFKKA-----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVI 373 (703)
Q Consensus 308 ~-~~~ir~lF~~A-----~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~--------~~~~ViVI 373 (703)
. ...+++++..+ ....++||||||+|.+...... .+.......+.+.|+..+++.. ...++++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~--~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 172 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 172 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC--CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc--cccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEE
Confidence 3 34466666532 1123689999999999765432 1122223334667777777532 23468888
Q ss_pred Ee----cCCcccccccccCCCccceeeeecCCChhhHHHHHHHHh-------------cCCCCC-ccccHHHHHHhC---
Q 005304 374 AA----TNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG-------------SNKKFD-ADVSLDVIAMRT--- 432 (703)
Q Consensus 374 aa----TN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l-------------~~~~l~-~dvdl~~lA~~t--- 432 (703)
++ ++.+..+++++++ ||+..+.|++|+.+++.+|++.++ .+..+. ++..++.++..+
T Consensus 173 ~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 250 (310)
T 1ofh_A 173 ASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRV 250 (310)
T ss_dssp EEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHH
T ss_pred EcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhh
Confidence 88 4578899999998 999889999999999999998422 111111 222356666655
Q ss_pred ----CCCcHHHHHHHHHHHHHHHHHh-----CCC-CcCHHHHHHHHHH
Q 005304 433 ----PGFSGADLANLLNEAAILAGRR-----GKA-AISSKEIDDSIDR 470 (703)
Q Consensus 433 ----~G~sgadL~~lv~eAa~~A~r~-----~~~-~It~~di~~Al~~ 470 (703)
.+.+.+++.++++.+...+..+ +.. .|+.+++.+++..
T Consensus 251 ~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 251 NEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred cccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 2467899999999877544322 211 4899999888764
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.82 E-value=1.4e-19 Score=187.71 Aligned_cols=225 Identities=20% Similarity=0.282 Sum_probs=150.2
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH-HHHhhh
Q 005304 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV-EMFVGV 307 (703)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~-~~~~G~ 307 (703)
..+.++|.+++.+.+.+....+. ..+...+...++++||+||||||||++|+++|.+.+.||+.+++++.. ....+.
T Consensus 31 ~~~~~i~~~~~~~~i~~~~~~l~--~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~ 108 (272)
T 1d2n_A 31 IMNGIIKWGDPVTRVLDDGELLV--QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETA 108 (272)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHH--HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHH
T ss_pred HhcCCCCccHHHHHHHHHHHHHH--HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHH
Confidence 34678899888777766322221 111223356678999999999999999999999999999999887522 111122
Q ss_pred hhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc-CCCCeEEEEecCCcccccc-c
Q 005304 308 GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-GNTGIIVIAATNRADILDS-A 385 (703)
Q Consensus 308 ~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~-~~~~ViVIaaTN~p~~LD~-a 385 (703)
....++.+|+.+....++||||||||.+...+..+ .......++.|...+++.. ...+++||+|||.++.+++ .
T Consensus 109 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~ 184 (272)
T 1d2n_A 109 KCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG----PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEME 184 (272)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT----TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC----hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhh
Confidence 33567889999888889999999999997654321 1223345556666666554 3456889999999999998 5
Q ss_pred ccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCC----cHHHHHHHHHHHHHHHHHhCCCCcCH
Q 005304 386 LLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGF----SGADLANLLNEAAILAGRRGKAAISS 461 (703)
Q Consensus 386 LlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~----sgadL~~lv~eAa~~A~r~~~~~It~ 461 (703)
+.+ ||+..+.++ +..+|.+|.+.......+ .+.++..++..+.|+ +.+++.++++.|...+ .....
T Consensus 185 l~~--rf~~~i~~p--~l~~r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-----~~~~~ 254 (272)
T 1d2n_A 185 MLN--AFSTTIHVP--NIATGEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-----PEYRV 254 (272)
T ss_dssp CTT--TSSEEEECC--CEEEHHHHHHHHHHHTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-----GGGHH
T ss_pred hhc--ccceEEcCC--CccHHHHHHHHHHhcCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-----hHHHH
Confidence 555 998777665 444455555444333333 344578899988886 5777777777664322 22344
Q ss_pred HHHHHHHH
Q 005304 462 KEIDDSID 469 (703)
Q Consensus 462 ~di~~Al~ 469 (703)
+++..++.
T Consensus 255 ~~~~~~l~ 262 (272)
T 1d2n_A 255 RKFLALLR 262 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44554444
No 38
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.81 E-value=3.2e-20 Score=211.88 Aligned_cols=225 Identities=24% Similarity=0.296 Sum_probs=150.1
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH---
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE--- 302 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~--- 302 (703)
.....+|++|++++++.+.+.+..-.-.. .. .+..++|+||||||||++|+++|+.++.++..++|+.+.+
T Consensus 76 ~~~l~~di~G~~~vk~~i~~~~~l~~~~~-----~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~ 149 (543)
T 3m6a_A 76 GRLLDEEHHGLEKVKERILEYLAVQKLTK-----SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESE 149 (543)
T ss_dssp GGTHHHHCSSCHHHHHHHHHHHHHHHHSS-----SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcc-----cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhh
Confidence 44567889999999999987664321110 01 3457999999999999999999999999999999877544
Q ss_pred ------HHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCC---------
Q 005304 303 ------MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN--------- 367 (703)
Q Consensus 303 ------~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~--------- 367 (703)
.++|.....+...|..+....| ||||||||.+...+. ....+.||..||.....
T Consensus 150 ~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~----------~~~~~~LL~~ld~~~~~~~~~~~~~~ 218 (543)
T 3m6a_A 150 IRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR----------GDPSSAMLEVLDPEQNSSFSDHYIEE 218 (543)
T ss_dssp --------------CHHHHHHTTCSSSE-EEEEEESSSCC-------------------CCGGGTCTTTTTBCCCSSSCC
T ss_pred hhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc----------cCHHHHHHHHHhhhhcceeecccCCe
Confidence 5667777777888888765655 999999999964331 22456677777643211
Q ss_pred ----CCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcC-----CCCC------ccccHHHHHH-h
Q 005304 368 ----TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN-----KKFD------ADVSLDVIAM-R 431 (703)
Q Consensus 368 ----~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~-----~~l~------~dvdl~~lA~-~ 431 (703)
.+++||+|||.++.++++|++ ||+ .|+++.|+.+++.+|++.++.. ..+. .+..+..++. .
T Consensus 219 ~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~ 295 (543)
T 3m6a_A 219 TFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYY 295 (543)
T ss_dssp CCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHH
T ss_pred eecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhC
Confidence 568999999999999999999 995 7999999999999999987621 2221 1122445454 3
Q ss_pred CCCCcHHHHHHHHH----HHHHHHHHh--CCCCcCHHHHHHHHHH
Q 005304 432 TPGFSGADLANLLN----EAAILAGRR--GKAAISSKEIDDSIDR 470 (703)
Q Consensus 432 t~G~sgadL~~lv~----eAa~~A~r~--~~~~It~~di~~Al~~ 470 (703)
+...+.++|++.+. .|+..+.+. +...|+.+++.+++..
T Consensus 296 ~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 296 TREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred ChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 33345566655554 444444433 3457899999988754
No 39
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.80 E-value=5e-19 Score=191.53 Aligned_cols=221 Identities=24% Similarity=0.289 Sum_probs=152.3
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhh---hccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH-Hhhh
Q 005304 232 DVAGVDEAKQDFMEVVEFLKKPERFT---AIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGV 307 (703)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~---~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~-~~G~ 307 (703)
.|+|++++++.+...+.......... ......++++||+||||||||++|+++|..++.||+.++|+++... |.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 37999999999998875321111100 0112356799999999999999999999999999999999998754 7777
Q ss_pred h-hhHHHHHHHHH----HhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc-----------------
Q 005304 308 G-ASRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE----------------- 365 (703)
Q Consensus 308 ~-~~~ir~lF~~A----~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~----------------- 365 (703)
. ...++.+|..+ ....++||||||||.+...+.....+.......+++.||..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 55677777765 3456789999999999877655433333344457888888888431
Q ss_pred --CCCCeEEEEecCCc----------cc-----------------------------------ccccccCCCccceeeee
Q 005304 366 --GNTGIIVIAATNRA----------DI-----------------------------------LDSALLRPGRFDRQVTV 398 (703)
Q Consensus 366 --~~~~ViVIaaTN~p----------~~-----------------------------------LD~aLlRpgRfdr~I~i 398 (703)
...++++|+++|.. .. +.|+|+. ||+..+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 22345666666542 11 6777877 99999999
Q ss_pred cCCChhhHHHHHHHHh-----------cCCCCCc---cccHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHh
Q 005304 399 DVPDIRGRTEILKVHG-----------SNKKFDA---DVSLDVIAM--RTPGFSGADLANLLNEAAILAGRR 454 (703)
Q Consensus 399 ~~Pd~~eR~~IL~~~l-----------~~~~l~~---dvdl~~lA~--~t~G~sgadL~~lv~eAa~~A~r~ 454 (703)
.+|+.+++.+|+...+ ....... +..++.|+. ....+..++|+++++++...+..+
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 9999999999987511 1112211 112455554 334456788999988888777654
No 40
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.79 E-value=5.2e-19 Score=187.76 Aligned_cols=210 Identities=18% Similarity=0.224 Sum_probs=145.4
Q ss_pred cccccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeec
Q 005304 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (703)
Q Consensus 218 ~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (703)
...+.++.++.+|++++|.+++++.+.+.+.. ...|..+|++||||||||++|+++|++++.+++++++
T Consensus 13 ~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~ 81 (324)
T 3u61_B 13 EHILEQKYRPSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNG 81 (324)
T ss_dssp CSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEET
T ss_pred cchHHHhhCCCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 34677788889999999999999988887761 2456678999999999999999999999999999998
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHhc-----CCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEE
Q 005304 298 SEFVEMFVGVGASRVRDLFKKAKEN-----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (703)
Q Consensus 298 se~~~~~~G~~~~~ir~lF~~A~~~-----aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViV 372 (703)
++.. ...+++.+...... .++||||||+|.+.. .. ..+.|+..++.. ..++.+
T Consensus 82 ~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~---~~~~L~~~le~~--~~~~~i 139 (324)
T 3u61_B 82 SDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AE---SQRHLRSFMEAY--SSNCSI 139 (324)
T ss_dssp TTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HH---HHHHHHHHHHHH--GGGCEE
T ss_pred cccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HH---HHHHHHHHHHhC--CCCcEE
Confidence 7632 33455555443332 568999999999931 12 334455555533 245788
Q ss_pred EEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHh-------c--CCCCCccccHHHHHHhCCCCcHHHHHHH
Q 005304 373 IAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG-------S--NKKFDADVSLDVIAMRTPGFSGADLANL 443 (703)
Q Consensus 373 IaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l-------~--~~~l~~dvdl~~lA~~t~G~sgadL~~l 443 (703)
|++||.++.+++++++ ||. .+.|+.|+.++|.+|++... . +..+.+...+..++..+.| +.+++.+.
T Consensus 140 I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~ 215 (324)
T 3u61_B 140 IITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGE 215 (324)
T ss_dssp EEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHH
T ss_pred EEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHH
Confidence 9999999999999999 885 79999999999877655432 2 2233331346778888765 45556666
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 005304 444 LNEAAILAGRRGKAAISSKEIDDSIDR 470 (703)
Q Consensus 444 v~eAa~~A~r~~~~~It~~di~~Al~~ 470 (703)
++.++ ....|+.+++.+++..
T Consensus 216 L~~~~------~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 216 LDSYS------SKGVLDAGILSLVTND 236 (324)
T ss_dssp HHHHG------GGTCBCC---------
T ss_pred HHHHh------ccCCCCHHHHHHHhCC
Confidence 66554 2345888888776543
No 41
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.79 E-value=3e-20 Score=206.13 Aligned_cols=170 Identities=24% Similarity=0.327 Sum_probs=82.1
Q ss_pred cccccchHHHHHHHHHHHH-hcCchhhhhccCC-CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH-HHhhh
Q 005304 231 DDVAGVDEAKQDFMEVVEF-LKKPERFTAIGAR-IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVGV 307 (703)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~-l~~p~~~~~lg~~-~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~-~~~G~ 307 (703)
++|+|++++|+.+...+.. ++.+..+..++.. .|+++||+||||||||++|+++|+.++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4799999999999887754 4444444444333 5789999999999999999999999999999999999988 58885
Q ss_pred -hhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEe-cCCccccccc
Q 005304 308 -GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA-TNRADILDSA 385 (703)
Q Consensus 308 -~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaa-TN~p~~LD~a 385 (703)
....++.+|+.+... +++||++.+.... .......++++||.+||++.....+ +++ ||+++.||++
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHH
Confidence 788999999998775 3489998874322 2234567999999999999776654 455 9999999999
Q ss_pred ccCCCccceeeeecCCChh-hHHHHHHH
Q 005304 386 LLRPGRFDRQVTVDVPDIR-GRTEILKV 412 (703)
Q Consensus 386 LlRpgRfdr~I~i~~Pd~~-eR~~IL~~ 412 (703)
|+||||||+.|+|++|+.. .|.+|+..
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp ----------------------------
T ss_pred HHcCCCcceEEEEcCCCCccchhhhhcC
Confidence 9999999999999999987 78888753
No 42
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.79 E-value=1.3e-18 Score=187.00 Aligned_cols=224 Identities=17% Similarity=0.225 Sum_probs=163.2
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEeech
Q 005304 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGS 298 (703)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~s 298 (703)
..+++++|.++..+.+.+.+..... ...+.+++|+||||||||++|+++++++ +.++++++|.
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 3558999999999888776643211 2345689999999999999999999988 8899999987
Q ss_pred hHHH------HHh----------hhhhhH-HHHHHHHHHh-cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhh
Q 005304 299 EFVE------MFV----------GVGASR-VRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 360 (703)
Q Consensus 299 e~~~------~~~----------G~~~~~-ir~lF~~A~~-~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ 360 (703)
...+ ... +..... ...+++.... ..|+||||||+|.+...+ ..+..+..++..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~ 158 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRI 158 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHG
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhc
Confidence 5321 110 111222 3344444433 348899999999994321 134677777777
Q ss_pred hcCccCCCCeEEEEecCCc---ccccccccCCCccce-eeeecCCChhhHHHHHHHHhcC----CCCCccccHHHHHHhC
Q 005304 361 MDGFEGNTGIIVIAATNRA---DILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSN----KKFDADVSLDVIAMRT 432 (703)
Q Consensus 361 ld~~~~~~~ViVIaaTN~p---~~LD~aLlRpgRfdr-~I~i~~Pd~~eR~~IL~~~l~~----~~l~~dvdl~~lA~~t 432 (703)
++....+.++++|++||.+ +.+++.+.+ ||.. .+.+++|+.+++.+|++.++.. ..+.++ .++.++..+
T Consensus 159 ~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~l~~~~ 235 (387)
T 2v1u_A 159 NQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPD-VVPLCAALA 235 (387)
T ss_dssp GGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS-HHHHHHHHH
T ss_pred hhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 6654325678999999987 778899988 8875 8999999999999999988653 233332 356677666
Q ss_pred C---CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 005304 433 P---GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (703)
Q Consensus 433 ~---G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~ 472 (703)
. | +++.+.++++.|...|..++...|+.+|+.+++....
T Consensus 236 ~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 236 AREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 5 5 6888999999999999888889999999999998763
No 43
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.78 E-value=1.4e-18 Score=193.44 Aligned_cols=222 Identities=18% Similarity=0.277 Sum_probs=156.2
Q ss_pred CCCccccccc-cchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEeech
Q 005304 225 NTGVTFDDVA-GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGS 298 (703)
Q Consensus 225 ~~~~~f~dv~-G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~s 298 (703)
.+..+|++++ |.+... ....+......+. . +.+++||||||||||+||+++++++ +.+++++++.
T Consensus 99 ~~~~tfd~fv~g~~n~~-a~~~~~~~a~~~~-------~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSF-AYHAALEVAKHPG-------R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CTTCSGGGCCCCTTTHH-HHHHHHHHHHSTT-------S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCCCChhhcCCCCchHH-HHHHHHHHHhCCC-------C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 3456899988 644332 2233333333332 2 5589999999999999999999988 8999999999
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 299 e~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
++...+.+.........|.......|+||||||+|.+..+ ...+.. |+..++........+||++.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~---------~~~q~~---l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 170 KFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK---------TGVQTE---LFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC---------HHHHHH---HHHHHHHHHTTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC---------hHHHHH---HHHHHHHHHHCCCeEEEEECCC
Confidence 9876655443322223344443336899999999999421 122223 3333332223445566666565
Q ss_pred ccc---ccccccCCCccc--eeeeecCCChhhHHHHHHHHhcC--CCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005304 379 ADI---LDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSN--KKFDADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (703)
Q Consensus 379 p~~---LD~aLlRpgRfd--r~I~i~~Pd~~eR~~IL~~~l~~--~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A 451 (703)
+.. +++++++ ||. ..+.+++|+.++|.+|++..+.. ..+++++ +..++..+.| +.+++.++++.+...|
T Consensus 238 ~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~-l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 238 PQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp GGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTH-HHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 664 7899999 886 68999999999999999988764 3343333 7888988875 8999999999999998
Q ss_pred HHhCCCCcCHHHHHHHHHHHH
Q 005304 452 GRRGKAAISSKEIDDSIDRIV 472 (703)
Q Consensus 452 ~r~~~~~It~~di~~Al~~v~ 472 (703)
...+. .|+.+++.+++....
T Consensus 314 ~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 314 ETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHSSS-CCCHHHHHHHTSTTT
T ss_pred HHhCC-CCCHHHHHHHHHHHh
Confidence 77664 699999999987654
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.77 E-value=3e-18 Score=191.14 Aligned_cols=206 Identities=24% Similarity=0.300 Sum_probs=153.8
Q ss_pred cCCCccccccccchHHH---HHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhH
Q 005304 224 PNTGVTFDDVAGVDEAK---QDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k---~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~ 300 (703)
..++.+|++++|+++++ ..+...+..-+ ..++||+||||||||++|+++|+.++.+|+.+++..
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~------------~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~- 85 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEAGH------------LHSMILWGPPGTGKTTLAEVIARYANADVERISAVT- 85 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHHTC------------CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHcCC------------CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-
Confidence 34567899999999999 56666664321 147999999999999999999999999999999743
Q ss_pred HHHHhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 005304 301 VEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (703)
Q Consensus 301 ~~~~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaT 376 (703)
.+...++.+|..+.. ..++||||||||.+... ..+.|+..++. ..+++|++|
T Consensus 86 ------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le~----~~v~lI~at 141 (447)
T 3pvs_A 86 ------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIED----GTITFIGAT 141 (447)
T ss_dssp ------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT----TSCEEEEEE
T ss_pred ------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHhc----CceEEEecC
Confidence 234456777776653 46799999999998321 23446666653 457777777
Q ss_pred --CCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCC-------CCC-ccccHHHHHHhCCCCcHHHHHHHHHH
Q 005304 377 --NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK-------KFD-ADVSLDVIAMRTPGFSGADLANLLNE 446 (703)
Q Consensus 377 --N~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~-------~l~-~dvdl~~lA~~t~G~sgadL~~lv~e 446 (703)
|....++++|++ |+. .+.++.|+.+++..+++..+... ... ++..++.++..+.| +.+++.++++.
T Consensus 142 t~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~ 217 (447)
T 3pvs_A 142 TENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEM 217 (447)
T ss_dssp SSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHH
T ss_pred CCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 445689999999 885 78899999999999999988652 111 22236778888665 78999999999
Q ss_pred HHHHHHHh--CCCCcCHHHHHHHHHH
Q 005304 447 AAILAGRR--GKAAISSKEIDDSIDR 470 (703)
Q Consensus 447 Aa~~A~r~--~~~~It~~di~~Al~~ 470 (703)
+...+... +...||.+++.+++.+
T Consensus 218 a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 218 MADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp HHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred HHHhcccccCCCCccCHHHHHHHHhh
Confidence 98877533 4568999999998864
No 45
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.77 E-value=1.2e-17 Score=164.40 Aligned_cols=206 Identities=22% Similarity=0.228 Sum_probs=149.0
Q ss_pred ccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEe
Q 005304 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSI 295 (703)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~pfi~i 295 (703)
+.++.++.+|++++|.++.++.+.+.+..- .+.+++|+||||||||++|+++++++ ..+++.+
T Consensus 7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 74 (226)
T 2chg_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (226)
T ss_dssp HHHHTSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEE
T ss_pred HHHhcCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEe
Confidence 344566778999999999999888776421 12259999999999999999999875 5678888
Q ss_pred echhHHHHHhhhhhhHHHHHHHHHH------hcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCC
Q 005304 296 SGSEFVEMFVGVGASRVRDLFKKAK------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG 369 (703)
Q Consensus 296 s~se~~~~~~G~~~~~ir~lF~~A~------~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ 369 (703)
++++... ...++..+.... ...+++|||||+|.+. ... .+.|+..++.. ..+
T Consensus 75 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~---~~~l~~~l~~~--~~~ 132 (226)
T 2chg_A 75 NASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------ADA---QAALRRTMEMY--SKS 132 (226)
T ss_dssp ETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC-----------HHH---HHHHHHHHHHT--TTT
T ss_pred ccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcC-----------HHH---HHHHHHHHHhc--CCC
Confidence 8865332 122233333222 2468899999999983 222 33444444432 346
Q ss_pred eEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 005304 370 IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAA 448 (703)
Q Consensus 370 ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa 448 (703)
+.+|++||.++.+++++.+ ||. .+.+++|+.++..++++.++...... .+..+..++..+.| +++.+.++++.++
T Consensus 133 ~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~ 208 (226)
T 2chg_A 133 CRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (226)
T ss_dssp EEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred CeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 7888999999999999998 887 89999999999999999887543322 22336677877765 6788888888776
Q ss_pred HHHHHhCCCCcCHHHHHHHHH
Q 005304 449 ILAGRRGKAAISSKEIDDSID 469 (703)
Q Consensus 449 ~~A~r~~~~~It~~di~~Al~ 469 (703)
..+ ..|+.+|+++++.
T Consensus 209 ~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 209 AIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HTC-----SCBCHHHHHHHHH
T ss_pred hcC-----ceecHHHHHHHhc
Confidence 554 5899999999875
No 46
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.76 E-value=9.7e-18 Score=178.24 Aligned_cols=218 Identities=15% Similarity=0.222 Sum_probs=146.6
Q ss_pred CCccccccc-cch--HHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechh
Q 005304 226 TGVTFDDVA-GVD--EAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (703)
Q Consensus 226 ~~~~f~dv~-G~d--e~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se 299 (703)
+..+|++++ |.+ .+...+..++ ..+. ..+.+++|+||||||||++|+++++++ +.+++++++.+
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~---~~~~-------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEAL---ENLG-------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHH---HTTT-------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHH---hCcC-------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 456899997 533 3333333333 3321 235689999999999999999999988 89999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005304 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (703)
Q Consensus 300 ~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (703)
+...+.+.........|.... ..+++|||||+|.+..+ ...++.+..++..+ ......+|+++++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~---------~~~~~~l~~~l~~~---~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGK---------ERTQIEFFHIFNTL---YLLEKQIILASDRHP 142 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTC---------HHHHHHHHHHHHHH---HHTTCEEEEEESSCG
T ss_pred HHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCC---------hHHHHHHHHHHHHH---HHCCCeEEEEecCCh
Confidence 877665543332223343333 24789999999998421 12233333333322 223456777777777
Q ss_pred c---cccccccCCCccc--eeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHH---
Q 005304 380 D---ILDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAIL--- 450 (703)
Q Consensus 380 ~---~LD~aLlRpgRfd--r~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~--- 450 (703)
. .++++|++ ||+ ..+.+++ +.+++.+|++.++...... ++..++.++..+ .+.+++.++++.+...
T Consensus 143 ~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~~~~ 217 (324)
T 1l8q_A 143 QKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLKGFE 217 (324)
T ss_dssp GGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHHCHH
T ss_pred HHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHcCHH
Confidence 6 68899998 886 5788999 9999999999988644332 222377888888 4789999999888765
Q ss_pred HHH-hCCCCc-CHHHHHHHHHHH
Q 005304 451 AGR-RGKAAI-SSKEIDDSIDRI 471 (703)
Q Consensus 451 A~r-~~~~~I-t~~di~~Al~~v 471 (703)
+.. .+...| +.+++.+++...
T Consensus 218 ~l~~~~~~~i~t~~~i~~~~~~~ 240 (324)
T 1l8q_A 218 GLERKERKERDKLMQIVEFVANY 240 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccccCCCCHHHHHHHHHHH
Confidence 100 122356 777777777654
No 47
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.75 E-value=2.9e-18 Score=194.51 Aligned_cols=232 Identities=19% Similarity=0.244 Sum_probs=152.3
Q ss_pred cccccccccCCCccccccccchHHHHHHHHHHHHhcC--chhhhhccC---CCCceEEEEcCCCChHHHHHHHHHHhcCC
Q 005304 216 SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKK--PERFTAIGA---RIPKGVLLVGPPGTGKTLLAKAIAGEAGV 290 (703)
Q Consensus 216 s~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~--p~~~~~lg~---~~p~gvLL~GPpGTGKT~LArAlA~e~~~ 290 (703)
+...+|.++.++.+|+|++|.+++++.+.+.+..... +..|...|. ..++++||+||||||||++|+++|++++.
T Consensus 24 ~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~ 103 (516)
T 1sxj_A 24 ASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY 103 (516)
T ss_dssp --CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred ccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3456788899999999999999999999888764321 222333333 36689999999999999999999999999
Q ss_pred CEEEeechhHHHHHhhhhh-------hHHHHHHHHH-----HhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHH
Q 005304 291 PFFSISGSEFVEMFVGVGA-------SRVRDLFKKA-----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (703)
Q Consensus 291 pfi~is~se~~~~~~G~~~-------~~ir~lF~~A-----~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL 358 (703)
++++++|+++......... ..+..+|..+ ....++||||||+|.+.... .. .++.|+
T Consensus 104 ~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~--------~~---~l~~L~ 172 (516)
T 1sxj_A 104 DILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD--------RG---GVGQLA 172 (516)
T ss_dssp EEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS--------TT---HHHHHH
T ss_pred CEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh--------HH---HHHHHH
Confidence 9999999876543221100 0123344443 23568999999999995321 11 233444
Q ss_pred hhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcC--CCCCccccHHHHHHhCCCCc
Q 005304 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN--KKFDADVSLDVIAMRTPGFS 436 (703)
Q Consensus 359 ~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~--~~l~~dvdl~~lA~~t~G~s 436 (703)
..++. .+..+++|+++.....+.+ +. |+...+.|+.|+.+++.+++...+.. ..++++ .+..|+..+.| +
T Consensus 173 ~~l~~--~~~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~G-d 244 (516)
T 1sxj_A 173 QFCRK--TSTPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTRG-D 244 (516)
T ss_dssp HHHHH--CSSCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTTT-C
T ss_pred HHHHh--cCCCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-c
Confidence 44432 2334566555544444543 43 34468999999999999999877643 334433 37888888865 4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 005304 437 GADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (703)
Q Consensus 437 gadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v 471 (703)
.+.+.++++.+ +. +...|+.+++.+++...
T Consensus 245 iR~~i~~L~~~---~~--~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 245 IRQVINLLSTI---ST--TTKTINHENINEISKAW 274 (516)
T ss_dssp HHHHHHHHTHH---HH--HSSCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHH---Hh--cCCCCchHHHHHHHHhh
Confidence 55555555443 32 34578888888777643
No 48
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.75 E-value=1.2e-17 Score=178.01 Aligned_cols=215 Identities=18% Similarity=0.163 Sum_probs=150.7
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH--HHHh
Q 005304 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV--EMFV 305 (703)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~--~~~~ 305 (703)
-.+++++|++++++.+...+.. ++++||+||||||||++|+++|+.++.+++.++|.... ..+.
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 3578899999999877765532 23799999999999999999999999999999884211 1122
Q ss_pred hhhhhH-HHHHHHHHHhcC---CeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCc---------cCCCCeEE
Q 005304 306 GVGASR-VRDLFKKAKENA---PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF---------EGNTGIIV 372 (703)
Q Consensus 306 G~~~~~-ir~lF~~A~~~a---P~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~---------~~~~~ViV 372 (703)
|..... ....|. .... .+||||||+|.+. .. ..+.|+..|+.. ..+.+++|
T Consensus 90 g~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~-----------~~---~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 90 GTMIYNQHKGNFE--VKKGPVFSNFILADEVNRSP-----------AK---VQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp EEEEEETTTTEEE--EEECTTCSSEEEEETGGGSC-----------HH---HHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred CceeecCCCCceE--eccCcccccEEEEEccccCC-----------HH---HHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 211000 000000 0112 3799999999972 22 344444444321 22446888
Q ss_pred EEecCCcc-----cccccccCCCccceeeeecCCChhhHHHHHHHHhcCCC------------------------CCccc
Q 005304 373 IAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK------------------------FDADV 423 (703)
Q Consensus 373 IaaTN~p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~------------------------l~~dv 423 (703)
|+|+|..+ .+++++++ ||+.++.++.|+.+++.+|++.++.... ++++
T Consensus 154 iat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~- 230 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISES- 230 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHH-
T ss_pred EEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHH-
Confidence 99888544 38999999 9998899999999999999998876431 1111
Q ss_pred cHHHHHHh-------------------CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCc
Q 005304 424 SLDVIAMR-------------------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGM 475 (703)
Q Consensus 424 dl~~lA~~-------------------t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~~g~ 475 (703)
.++.++.. ..|.|++.+.++++.|...|..+++..|+.+|+.+++..++...
T Consensus 231 ~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r 301 (331)
T 2r44_A 231 LEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHR 301 (331)
T ss_dssp HHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhh
Confidence 12333221 12568999999999999999999999999999999999887553
No 49
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.75 E-value=3e-17 Score=175.12 Aligned_cols=220 Identities=20% Similarity=0.269 Sum_probs=141.9
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------C------
Q 005304 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------P------ 291 (703)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~-------p------ 291 (703)
.++.+|++++|.+++++.+.... + .+ .+.++||+||||||||++|+++++.++. +
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~--~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTA--V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH--H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHh--h-CC---------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 35678999999999876543221 1 11 1236999999999999999999998862 2
Q ss_pred --------------------EEEeechhHHHHHhhhhhhHHHHHHHHH---------HhcCCeEEEEcCcccccccCCCC
Q 005304 292 --------------------FFSISGSEFVEMFVGVGASRVRDLFKKA---------KENAPCIVFVDEIDAVGRQRGTG 342 (703)
Q Consensus 292 --------------------fi~is~se~~~~~~G~~~~~ir~lF~~A---------~~~aP~ILfIDEID~L~~~r~~~ 342 (703)
++.+..+.....+.|.. .+...|... ....++||||||||.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~------ 157 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLE------ 157 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCC------
Confidence 22222111111122210 011122211 11236899999999982
Q ss_pred CCCCChHHHHHHHHHHhhhcC----c-------cCCCCeEEEEecCCcc-cccccccCCCccceeeeecCC-ChhhHHHH
Q 005304 343 IGGGNDEREQTLNQLLTEMDG----F-------EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVP-DIRGRTEI 409 (703)
Q Consensus 343 ~~~~~~e~~~~l~~LL~~ld~----~-------~~~~~ViVIaaTN~p~-~LD~aLlRpgRfdr~I~i~~P-d~~eR~~I 409 (703)
.. .++.|+..++. + ....++++|+|||..+ .++++|++ ||+.++.++.| +.+++.+|
T Consensus 158 -----~~---~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~i 227 (350)
T 1g8p_A 158 -----DH---IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEV 227 (350)
T ss_dssp -----HH---HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHH
T ss_pred -----HH---HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHH
Confidence 22 23344443332 1 1123689999999754 89999999 99988999999 56677788
Q ss_pred HHHHh-------------------------------cCCCCCccccHHHHHHhCC---CCcHHHHHHHHHHHHHHHHHhC
Q 005304 410 LKVHG-------------------------------SNKKFDADVSLDVIAMRTP---GFSGADLANLLNEAAILAGRRG 455 (703)
Q Consensus 410 L~~~l-------------------------------~~~~l~~dvdl~~lA~~t~---G~sgadL~~lv~eAa~~A~r~~ 455 (703)
++.++ ....++++ .+..++.... +-+.+.+.++++.|...|..++
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~-~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~ 306 (350)
T 1g8p_A 228 IRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNT-ALYDCAALCIALGSDGLRGELTLLRSARALAALEG 306 (350)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHH-HHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC
Confidence 86631 11222222 2344444332 2367999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHcCc
Q 005304 456 KAAISSKEIDDSIDRIVAGM 475 (703)
Q Consensus 456 ~~~It~~di~~Al~~v~~g~ 475 (703)
+..|+.+|+.+|+..++...
T Consensus 307 ~~~v~~~~v~~a~~~~l~~r 326 (350)
T 1g8p_A 307 ATAVGRDHLKRVATMALSHR 326 (350)
T ss_dssp CSBCCHHHHHHHHHHHHGGG
T ss_pred CCcCCHHHHHHHHHHHHhhc
Confidence 99999999999998876553
No 50
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.75 E-value=1.5e-17 Score=179.37 Aligned_cols=214 Identities=23% Similarity=0.307 Sum_probs=156.4
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-----------CCCEEEeec
Q 005304 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----------GVPFFSISG 297 (703)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-----------~~pfi~is~ 297 (703)
.+++++|.++.++++.+.+...... ..+++++|+||||||||++|+++++++ +.++++++|
T Consensus 18 ~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 18 VFKEIPFREDILRDAAIAIRYFVKN--------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp HCSSCTTCHHHHHHHHHHHHHHHTT--------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 3489999999999999888654322 345689999999999999999999987 899999998
Q ss_pred hhHH-H----------HH-------hhhh-hhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHH-HHHH
Q 005304 298 SEFV-E----------MF-------VGVG-ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT-LNQL 357 (703)
Q Consensus 298 se~~-~----------~~-------~G~~-~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~-l~~L 357 (703)
.... . .+ .+.. ...+..+++.+... ++||||||+|.+.... .... +..|
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~----------~~~~~l~~l 158 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRR----------GGDIVLYQL 158 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHST----------TSHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCC----------CCceeHHHH
Confidence 7643 1 11 0111 12234444444333 3499999999995321 1234 5555
Q ss_pred HhhhcCccCCCCeEEEEecCCc---ccccccccCCCccceeeeecCCChhhHHHHHHHHhcC----CCCCccccHHHHHH
Q 005304 358 LTEMDGFEGNTGIIVIAATNRA---DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN----KKFDADVSLDVIAM 430 (703)
Q Consensus 358 L~~ld~~~~~~~ViVIaaTN~p---~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~----~~l~~dvdl~~lA~ 430 (703)
+... .++.+|++||.+ +.+++++++ ||...+.+++|+.++..+|++.++.. ..+.++ .++.++.
T Consensus 159 ~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~i~~ 229 (384)
T 2qby_B 159 LRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDE-ILSYIAA 229 (384)
T ss_dssp HTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSH-HHHHHHH
T ss_pred hcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHH-HHHHHHH
Confidence 5433 678999999987 678999988 88889999999999999999988752 223332 3566776
Q ss_pred hCCC--CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 005304 431 RTPG--FSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (703)
Q Consensus 431 ~t~G--~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~ 472 (703)
.+.+ .+.+.+.++++.|...|. +...|+.+|+.+++++..
T Consensus 230 ~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 230 ISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 6651 357788899999988876 667899999999998764
No 51
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.75 E-value=3e-17 Score=163.08 Aligned_cols=208 Identities=20% Similarity=0.285 Sum_probs=150.2
Q ss_pred cccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--------
Q 005304 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------- 291 (703)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p-------- 291 (703)
.+.++..+.+|++++|.++.++.+.+.+..- +.++.++|+||||+|||+++++++++.+..
T Consensus 12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~ 80 (250)
T 1njg_A 12 VLARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 80 (250)
T ss_dssp CHHHHTCCCSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC
T ss_pred HHhhccCCccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 3445666778999999999999888877532 234579999999999999999999877432
Q ss_pred ----------------EEEeechhHHHHHhhhhhhHHHHHHHHHH----hcCCeEEEEcCcccccccCCCCCCCCChHHH
Q 005304 292 ----------------FFSISGSEFVEMFVGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDERE 351 (703)
Q Consensus 292 ----------------fi~is~se~~~~~~G~~~~~ir~lF~~A~----~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~ 351 (703)
++.++... ......++.+++.+. ...|.+|+|||+|.+. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~--------------~ 140 (250)
T 1njg_A 81 GVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------------R 140 (250)
T ss_dssp SCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC--------------H
T ss_pred cccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc--------------H
Confidence 22222211 112234555555442 2347899999999982 1
Q ss_pred HHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHH
Q 005304 352 QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAM 430 (703)
Q Consensus 352 ~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~ 430 (703)
..++.|+..++.. ..++++|++||.++.+++++.+ |+ ..+.+++|+.++..++++.++...... .+..+..++.
T Consensus 141 ~~~~~l~~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~ 215 (250)
T 1njg_A 141 HSFNALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 215 (250)
T ss_dssp HHHHHHHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 2445566666543 4568899999999999999988 65 588999999999999999887644322 2233678888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 431 RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 431 ~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
.+.| +++++.++++.|... +...|+.+++++++
T Consensus 216 ~~~G-~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 216 AAEG-SLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHTT-CHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HcCC-CHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 8877 799999999888543 34589999998875
No 52
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.74 E-value=2.2e-17 Score=165.51 Aligned_cols=206 Identities=13% Similarity=0.122 Sum_probs=140.1
Q ss_pred CCccccccccch---HHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechh
Q 005304 226 TGVTFDDVAGVD---EAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (703)
Q Consensus 226 ~~~~f~dv~G~d---e~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se 299 (703)
+..+|++++|.+ ++.+.+...+. . ..+++++|+||||||||++|+++++++ +.+++++++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~---~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAAS---G---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHH---T---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 347899999833 34443333332 1 134589999999999999999999876 48899999988
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCe-EEEEecCC
Q 005304 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGI-IVIAATNR 378 (703)
Q Consensus 300 ~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~V-iVIaaTN~ 378 (703)
+.+.+... ++. ...+++|||||+|.+.. .......+..++.. ......+ +|+++++.
T Consensus 91 ~~~~~~~~--------~~~--~~~~~vliiDe~~~~~~---------~~~~~~~l~~~l~~---~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 91 HASISTAL--------LEG--LEQFDLICIDDVDAVAG---------HPLWEEAIFDLYNR---VAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGGSCGGG--------GTT--GGGSSEEEEETGGGGTT---------CHHHHHHHHHHHHH---HHHHCSCEEEEEESSC
T ss_pred HHHHHHHH--------HHh--ccCCCEEEEeccccccC---------CHHHHHHHHHHHHH---HHHcCCCeEEEEcCCC
Confidence 76543211 111 13468999999999832 11123333333332 2223334 44444444
Q ss_pred cc---cccccccCCCccc--eeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 005304 379 AD---ILDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAG 452 (703)
Q Consensus 379 p~---~LD~aLlRpgRfd--r~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~ 452 (703)
++ .+++++.+ ||. ..+++++|+.+++.++++.++...... .+..++.++..+.| +.+++.++++.+...|.
T Consensus 149 ~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~ 225 (242)
T 3bos_A 149 PMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASM 225 (242)
T ss_dssp TTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 44 45678888 776 799999999999999999987644332 22336778888875 79999999999998886
Q ss_pred HhCCCCcCHHHHHHHHH
Q 005304 453 RRGKAAISSKEIDDSID 469 (703)
Q Consensus 453 r~~~~~It~~di~~Al~ 469 (703)
..+ ..|+.+++++++.
T Consensus 226 ~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 226 VHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHT-CCCCHHHHHHHHT
T ss_pred HhC-CCCcHHHHHHHhh
Confidence 655 4699999998863
No 53
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.74 E-value=1.2e-16 Score=171.37 Aligned_cols=216 Identities=23% Similarity=0.340 Sum_probs=159.7
Q ss_pred cCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~ 303 (703)
.-.+.+|++++|.+.+++.+...+...+.+ ...+..++|+||||+|||+||+++|++.++++...++..+..
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~- 89 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK- 89 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-
Confidence 344558999999999988887776543211 134567999999999999999999999999998887754421
Q ss_pred HhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc----------------CC
Q 005304 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE----------------GN 367 (703)
Q Consensus 304 ~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~----------------~~ 367 (703)
...+..++.. ...++|+||||+|.+.+ ..+..+ +..++... .-
T Consensus 90 -----~~~l~~~~~~--~~~~~v~~iDE~~~l~~-----------~~~e~L---~~~~~~~~~~i~~~~~~~~~~i~~~l 148 (334)
T 1in4_A 90 -----QGDMAAILTS--LERGDVLFIDEIHRLNK-----------AVEELL---YSAIEDFQIDIMIGKGPSAKSIRIDI 148 (334)
T ss_dssp -----HHHHHHHHHH--CCTTCEEEEETGGGCCH-----------HHHHHH---HHHHHTSCCCC---------------
T ss_pred -----HHHHHHHHHH--ccCCCEEEEcchhhcCH-----------HHHHHH---HHHHHhcccceeeccCcccccccccC
Confidence 1223333332 23467999999999832 122233 22222211 01
Q ss_pred CCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCc-cccHHHHHHhCCCCcHHHHHHHHHH
Q 005304 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGADLANLLNE 446 (703)
Q Consensus 368 ~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~lA~~t~G~sgadL~~lv~e 446 (703)
..+.++++|+.+..|++.+++ ||...+.+++|+.+++.+|++.......... +..+..++.++.| +++++.++++.
T Consensus 149 ~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~ 225 (334)
T 1in4_A 149 QPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKR 225 (334)
T ss_dssp CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHH
T ss_pred CCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 246788899999999999999 9988899999999999999998875443332 2237788888887 67999999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHH
Q 005304 447 AAILAGRRGKAAISSKEIDDSIDRI 471 (703)
Q Consensus 447 Aa~~A~r~~~~~It~~di~~Al~~v 471 (703)
+...|..++...|+.+++.++++.+
T Consensus 226 ~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 226 VRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 9999988888899999999999875
No 54
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.72 E-value=8.7e-17 Score=172.47 Aligned_cols=223 Identities=17% Similarity=0.254 Sum_probs=159.0
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc------CCCEEEeechhH
Q 005304 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSISGSEF 300 (703)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~------~~pfi~is~se~ 300 (703)
...+++++|.++..+.+.+.+..... ...+..++|+||||||||++++++++++ +.++++++|...
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 34568999999998888776643211 1345689999999999999999999988 899999998754
Q ss_pred HH------HH----------hhhhhhH-HHHHHHHHHhc-CCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc
Q 005304 301 VE------MF----------VGVGASR-VRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (703)
Q Consensus 301 ~~------~~----------~G~~~~~-ir~lF~~A~~~-aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld 362 (703)
.. .. .+..... ...+++..... .|+||+|||+|.+..... ...+..++..++
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----------~~~l~~l~~~~~ 157 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----------DDILYKLSRINS 157 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----------STHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----------CHHHHHHhhchh
Confidence 21 11 0111222 33444444433 389999999999954321 135666666665
Q ss_pred CccCCCCeEEEEecCCc---ccccccccCCCccc-eeeeecCCChhhHHHHHHHHhcC----CCCCccccHHHHHHhCC-
Q 005304 363 GFEGNTGIIVIAATNRA---DILDSALLRPGRFD-RQVTVDVPDIRGRTEILKVHGSN----KKFDADVSLDVIAMRTP- 433 (703)
Q Consensus 363 ~~~~~~~ViVIaaTN~p---~~LD~aLlRpgRfd-r~I~i~~Pd~~eR~~IL~~~l~~----~~l~~dvdl~~lA~~t~- 433 (703)
.. ...++.+|++||.+ +.+++.+.+ ||. +.+.+++++.++..++++.++.. ..+.+ ..+..++..+.
T Consensus 158 ~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 233 (386)
T 2qby_A 158 EV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPD-NVIKLCAALAAR 233 (386)
T ss_dssp SC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCH-HHHHHHHHHHHH
T ss_pred hc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHH
Confidence 44 34578899999876 467788887 665 58999999999999999987642 22222 22555666655
Q ss_pred --CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 005304 434 --GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (703)
Q Consensus 434 --G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~ 472 (703)
| +++.+.++++.|...|...+...|+.+++..|+....
T Consensus 234 ~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 234 EHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp TTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred hcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 5 5788889999999999888888999999999998764
No 55
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.72 E-value=1.2e-17 Score=160.51 Aligned_cols=160 Identities=24% Similarity=0.412 Sum_probs=118.0
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEe
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~pfi~i 295 (703)
.+.+|++++|.++..+++.+.+. . ..+++++|+||||||||++|+++++++ +.+++++
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQ---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hhccccccccchHHHHHHHHHHh---c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 35579999999998777666542 2 235689999999999999999999986 7899999
Q ss_pred echhHH--HHHhhhhhhHHHHHHHHHHh-cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEE
Q 005304 296 SGSEFV--EMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (703)
Q Consensus 296 s~se~~--~~~~G~~~~~ir~lF~~A~~-~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViV 372 (703)
++..+. ..+.+.....++.++..+.. ..|+||||||+|.+...+... ........+..++. ..++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~---~~~~~~~~l~~~~~-------~~~~~~ 154 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDAGNMLKPALA-------RGELHC 154 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHHH-------TTSCCE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc---chHHHHHHHHHhhc-------cCCeEE
Confidence 998876 23455566677788876643 558899999999996543211 11222333444332 346788
Q ss_pred EEecCCcc-----cccccccCCCccceeeeecCCChhhHHHHH
Q 005304 373 IAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEIL 410 (703)
Q Consensus 373 IaaTN~p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL 410 (703)
|++||.++ .+++++++ ||+ .+.++.|+.+++.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 89998876 68999999 998 6999999999998875
No 56
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.72 E-value=3.3e-17 Score=178.01 Aligned_cols=235 Identities=20% Similarity=0.224 Sum_probs=142.8
Q ss_pred cccccchHHHHHHHHHHHH-hcCchhh-----------------hhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE
Q 005304 231 DDVAGVDEAKQDFMEVVEF-LKKPERF-----------------TAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF 292 (703)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~-l~~p~~~-----------------~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pf 292 (703)
++|+|++++|+.+...+.. ++..... ..-....+.++||+||||||||++|+++|+.++.||
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3589999999999987732 1111100 001223566899999999999999999999999999
Q ss_pred EEeechhHH-HHHhhhh-hhHHHHHHHHHH----hcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc-
Q 005304 293 FSISGSEFV-EMFVGVG-ASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE- 365 (703)
Q Consensus 293 i~is~se~~-~~~~G~~-~~~ir~lF~~A~----~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~- 365 (703)
+.++|+.+. ..+.|.. ...+..+|..+. ...++||||||+|.+...+..............++.|+..|++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999998875 3455543 334555555432 346789999999999766433221122222336677777777531
Q ss_pred ------------------CCCCeEEEEecCCc-----------------------------------------ccccccc
Q 005304 366 ------------------GNTGIIVIAATNRA-----------------------------------------DILDSAL 386 (703)
Q Consensus 366 ------------------~~~~ViVIaaTN~p-----------------------------------------~~LD~aL 386 (703)
...++++|+++|.. ..+.|.|
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 12457888888721 1244566
Q ss_pred cCCCccceeeeecCCChhhHHHHHHH-----------Hhc--CCCCC-ccccHHHHHHhCC--CCcHHHHHHHHHHHHHH
Q 005304 387 LRPGRFDRQVTVDVPDIRGRTEILKV-----------HGS--NKKFD-ADVSLDVIAMRTP--GFSGADLANLLNEAAIL 450 (703)
Q Consensus 387 lRpgRfdr~I~i~~Pd~~eR~~IL~~-----------~l~--~~~l~-~dvdl~~lA~~t~--G~sgadL~~lv~eAa~~ 450 (703)
++ ||+..+.+++++.++...|+.. .+. +..+. .+..+..|+.... ..+.++|.++++.+...
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 66 8888899999999999888862 111 11111 1222556666532 35678999999988877
Q ss_pred HHHhCC------CCcCHHHHHHH
Q 005304 451 AGRRGK------AAISSKEIDDS 467 (703)
Q Consensus 451 A~r~~~------~~It~~di~~A 467 (703)
+..+.. ..|+.+++.++
T Consensus 339 ~~~~~~~~~~~~~~i~~~~v~~~ 361 (376)
T 1um8_A 339 IMFDLPKLKGSEVRITKDCVLKQ 361 (376)
T ss_dssp HHHTGGGGTTSEEEECHHHHTTS
T ss_pred HHhhccCCCCCEEEEeHHHhcCC
Confidence 655421 24777776654
No 57
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.71 E-value=7.1e-17 Score=190.94 Aligned_cols=223 Identities=21% Similarity=0.326 Sum_probs=163.4
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEe
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~pfi~i 295 (703)
.+-+|++++|.++.++.+.+++. . ..+.++||+||||||||++|+++|..+ +.+++.+
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~---~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLC---R---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred hcCCCCCccCCHHHHHHHHHHHh---c---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 44589999999998887666552 1 234589999999999999999999876 6678888
Q ss_pred echhHH--HHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEE
Q 005304 296 SGSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (703)
Q Consensus 296 s~se~~--~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVI 373 (703)
+++.+. ..+.|....+++.+|+.+....++||||||+|.+.+.++. ........+.|...+ .+.++.+|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~-----~~~~~~~~~~L~~~l----~~~~~~~I 319 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA-----SGGQVDAANLIKPLL----SSGKIRVI 319 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCS-----SSCHHHHHHHHSSCS----SSCCCEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCC-----CcchHHHHHHHHHHH----hCCCeEEE
Confidence 887776 3567778889999999998878899999999999765432 111223333333333 35678999
Q ss_pred EecCCcc-----cccccccCCCccceeeeecCCChhhHHHHHHHHhcC------CCCCccccHHHHHHh-----CCCCcH
Q 005304 374 AATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN------KKFDADVSLDVIAMR-----TPGFSG 437 (703)
Q Consensus 374 aaTN~p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~------~~l~~dvdl~~lA~~-----t~G~sg 437 (703)
++||.++ .+|++|.| ||+ .+.|+.|+.+++.+|++.+... ..+.++ .+..++.. ...+.+
T Consensus 320 ~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~-al~~~~~~s~~~i~~~~lp 395 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAK-AVRAAVELAVKYINDRHLP 395 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHCTTSCTT
T ss_pred EEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHhhhhcccccCc
Confidence 9999754 47899999 998 7999999999999999876643 222222 24444443 334667
Q ss_pred HHHHHHHHHHHHHHHH----hCCCCcCHHHHHHHHHHHHc
Q 005304 438 ADLANLLNEAAILAGR----RGKAAISSKEIDDSIDRIVA 473 (703)
Q Consensus 438 adL~~lv~eAa~~A~r----~~~~~It~~di~~Al~~v~~ 473 (703)
..+..++++|+..+.. .+...|+.+|+.+++.++..
T Consensus 396 ~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~~ 435 (758)
T 1r6b_X 396 DKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIAR 435 (758)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhcC
Confidence 7888999999877655 34568999999999988753
No 58
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=5.8e-17 Score=172.84 Aligned_cols=214 Identities=20% Similarity=0.223 Sum_probs=151.6
Q ss_pred cccccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcC------CC
Q 005304 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG------VP 291 (703)
Q Consensus 218 ~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~------~p 291 (703)
...+.++.++.+|++++|.+++++.+...+. .. ..+ ++||+||||||||++|+++|++++ ..
T Consensus 24 ~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~---~~--------~~~-~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~ 91 (353)
T 1sxj_D 24 QQPWVEKYRPKNLDEVTAQDHAVTVLKKTLK---SA--------NLP-HMLFYGPPGTGKTSTILALTKELYGPDLMKSR 91 (353)
T ss_dssp --CHHHHTCCSSTTTCCSCCTTHHHHHHHTT---CT--------TCC-CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred CccHHHhcCCCCHHHhhCCHHHHHHHHHHHh---cC--------CCC-EEEEECCCCCCHHHHHHHHHHHhCCCcccccc
Confidence 3456677888999999999999987776653 21 122 499999999999999999998853 56
Q ss_pred EEEeechhHHHHHhhhhhhHHHHHHHHHH----------------hcCCeEEEEcCcccccccCCCCCCCCChHHHHHHH
Q 005304 292 FFSISGSEFVEMFVGVGASRVRDLFKKAK----------------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLN 355 (703)
Q Consensus 292 fi~is~se~~~~~~G~~~~~ir~lF~~A~----------------~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~ 355 (703)
++.+++++... ...+++.+.... ...+.||||||+|.+. . ...+
T Consensus 92 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~-----------~---~~~~ 151 (353)
T 1sxj_D 92 ILELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-----------A---DAQS 151 (353)
T ss_dssp EEEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-----------H---HHHH
T ss_pred eEEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-----------H---HHHH
Confidence 88888775311 112222222111 1235699999999983 1 2334
Q ss_pred HHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCC
Q 005304 356 QLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPG 434 (703)
Q Consensus 356 ~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G 434 (703)
.|+..++... .+..+|.+||.++.+++++++ |+. .+.+++|+.++...+++..+...... ++..+..++..+.|
T Consensus 152 ~Ll~~le~~~--~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 226 (353)
T 1sxj_D 152 ALRRTMETYS--GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG 226 (353)
T ss_dssp HHHHHHHHTT--TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS
T ss_pred HHHHHHHhcC--CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 5555555432 346677788999999999998 886 78999999999999999887654332 23347788888876
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCC-CcCHHHHHHHHH
Q 005304 435 FSGADLANLLNEAAILAGRRGKA-AISSKEIDDSID 469 (703)
Q Consensus 435 ~sgadL~~lv~eAa~~A~r~~~~-~It~~di~~Al~ 469 (703)
+.+.+.++++.+...+.+.+.. .|+.+|+.+++.
T Consensus 227 -~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 227 -DLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp -CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 5788888888888777655444 799999987654
No 59
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.70 E-value=6.5e-17 Score=169.86 Aligned_cols=203 Identities=20% Similarity=0.281 Sum_probs=138.7
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHH-----
Q 005304 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----- 302 (703)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~----- 302 (703)
++++|++++++.+...+......-. ...++..++||+||||||||++|+++|+.+ +.+++.++|+.+.+
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~---~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS---CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC---CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 4688999999999988876421100 011233479999999999999999999987 67899999987643
Q ss_pred HHhhhhh-----hHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc---------CCC
Q 005304 303 MFVGVGA-----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------GNT 368 (703)
Q Consensus 303 ~~~G~~~-----~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~---------~~~ 368 (703)
.+.|... .....+........++||||||+|.+. . ...+.|+..++... .-.
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~-----------~---~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH-----------P---DVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC-----------H---HHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC-----------H---HHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 2222110 000122333334455899999999982 2 24455555554321 013
Q ss_pred CeEEEEecCC--------------------------cccccccccCCCccceeeeecCCChhhHHHHHHHHhcCC-----
Q 005304 369 GIIVIAATNR--------------------------ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK----- 417 (703)
Q Consensus 369 ~ViVIaaTN~--------------------------p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~----- 417 (703)
++++|+|||. ...++++|++ ||+..+.+.+|+.+++..|++.++...
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~ 237 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLA 237 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6789999998 5578888988 999999999999999999998876542
Q ss_pred --CCC---ccccHHHHHHhCC--CCcHHHHHHHHHHHHHHHH
Q 005304 418 --KFD---ADVSLDVIAMRTP--GFSGADLANLLNEAAILAG 452 (703)
Q Consensus 418 --~l~---~dvdl~~lA~~t~--G~sgadL~~lv~eAa~~A~ 452 (703)
... .+..+..++.... ..+.++|.++++.+...+.
T Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 238 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp TTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred hCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 111 1223566777655 5688999999998877654
No 60
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.70 E-value=3.5e-16 Score=168.60 Aligned_cols=220 Identities=14% Similarity=0.153 Sum_probs=158.4
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCc--eEEEEcCCCChHHHHHHHHHHhc----CCCEEEeechhHH
Q 005304 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK--GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFV 301 (703)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~--gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~se~~ 301 (703)
..+++++|.++..+.+.+.+...... ..+. .++|+||||||||++++++++.+ +.++++++|....
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 34589999999999988887653211 1233 79999999999999999999988 6789999976532
Q ss_pred H------HHh----------hhhhhHHH-HHHHHHH-hcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcC
Q 005304 302 E------MFV----------GVGASRVR-DLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 363 (703)
Q Consensus 302 ~------~~~----------G~~~~~ir-~lF~~A~-~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~ 363 (703)
. ... +.....+. .+..... ...|.||+|||+|.+. ...++.|+..++.
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~--------------~~~~~~L~~~~~~ 151 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA--------------PDILSTFIRLGQE 151 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC--------------HHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc--------------hHHHHHHHHHHHh
Confidence 1 111 11112222 2222222 2458999999999981 2345556655554
Q ss_pred ccC--CCCeEEEEecCCc---ccccccccCCCccce-eeeecCCChhhHHHHHHHHhcC----CCCCccccHHHHHHhCC
Q 005304 364 FEG--NTGIIVIAATNRA---DILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSN----KKFDADVSLDVIAMRTP 433 (703)
Q Consensus 364 ~~~--~~~ViVIaaTN~p---~~LD~aLlRpgRfdr-~I~i~~Pd~~eR~~IL~~~l~~----~~l~~dvdl~~lA~~t~ 433 (703)
... ..++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..++++..+.. ..+ .+..+..++..+.
T Consensus 152 ~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~l~~~~~ 228 (389)
T 1fnn_A 152 ADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSY-SEDILQMIADITG 228 (389)
T ss_dssp HHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSS-CHHHHHHHHHHHS
T ss_pred CCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHh
Confidence 332 2478899999987 677888877 7875 7999999999999999887653 222 2334677888873
Q ss_pred --------CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 005304 434 --------GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (703)
Q Consensus 434 --------G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~ 472 (703)
+.+++.+.++++.|...|..++...|+.+++..++....
T Consensus 229 ~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 229 AQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp BSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred hcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 236889999999999999988889999999999988764
No 61
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.70 E-value=7.5e-17 Score=180.85 Aligned_cols=208 Identities=22% Similarity=0.338 Sum_probs=141.7
Q ss_pred cCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEE
Q 005304 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFF 293 (703)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~pfi 293 (703)
...+-+|++|+|.++.++.+.+++.. ..+.++||+||||||||++|+++|..+ +.+|+
T Consensus 173 ~~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HHhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 34566899999999998887776642 123479999999999999999999986 88899
Q ss_pred EeechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEE
Q 005304 294 SISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (703)
Q Consensus 294 ~is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVI 373 (703)
.++++ ..+.|....+++.+|+.+....|+||||| +. ....+.|+..|+ ...+.+|
T Consensus 241 ~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~-------------~~a~~~L~~~L~----~g~v~vI 295 (468)
T 3pxg_A 241 TLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA-------------IDASNILKPSLA----RGELQCI 295 (468)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEE
T ss_pred EeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc-------------hhHHHHHHHhhc----CCCEEEE
Confidence 99988 66778888889999999998889999999 10 113345555554 4579999
Q ss_pred EecCCcc-----cccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCC----C-ccccHHHHHHhC-----CCCcHH
Q 005304 374 AATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKF----D-ADVSLDVIAMRT-----PGFSGA 438 (703)
Q Consensus 374 aaTN~p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l----~-~dvdl~~lA~~t-----~G~sga 438 (703)
++||.++ .+|++++| ||. .|.|+.|+.+++.+|++.++..... . .+..+..++..+ ..+.+.
T Consensus 296 ~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~ 372 (468)
T 3pxg_A 296 GATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPD 372 (468)
T ss_dssp EECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTH
T ss_pred ecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCc
Confidence 9999987 68999999 997 5999999999999999988765321 1 122244444432 234456
Q ss_pred HHHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHHH
Q 005304 439 DLANLLNEAAILAGRRGK-AAISSKEIDDSIDRI 471 (703)
Q Consensus 439 dL~~lv~eAa~~A~r~~~-~~It~~di~~Al~~v 471 (703)
....++.+|+..+..+.. ..-...+++..++++
T Consensus 373 ~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 373 KAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 777888888766655433 233444555554443
No 62
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.69 E-value=1.7e-16 Score=166.45 Aligned_cols=206 Identities=23% Similarity=0.258 Sum_probs=148.3
Q ss_pred cccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEE
Q 005304 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFS 294 (703)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~pfi~ 294 (703)
.+.++.++.+|++++|++++++.+.+.+.. ...| ++||+||||||||++|+++++++ +.+++.
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 73 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVER-----------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT-----------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEE
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhC-----------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEE
Confidence 355677888999999999999887765531 1223 49999999999999999999986 456888
Q ss_pred eechhHHHHHhhhhhhHHHHHHHHHH------hcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCC
Q 005304 295 ISGSEFVEMFVGVGASRVRDLFKKAK------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (703)
Q Consensus 295 is~se~~~~~~G~~~~~ir~lF~~A~------~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~ 368 (703)
+++++... ...+++.+.... ...+.||+|||+|.+. ....+.|+..++.. ..
T Consensus 74 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~--------------~~~~~~L~~~le~~--~~ 131 (319)
T 2chq_A 74 MNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT--------------ADAQAALRRTMEMY--SK 131 (319)
T ss_dssp EETTSTTC------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC--------------HHHHHTTGGGTSSS--SS
T ss_pred EeCccccC------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC--------------HHHHHHHHHHHHhc--CC
Confidence 88876421 112223333222 1447899999999983 13456677777643 45
Q ss_pred CeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHH
Q 005304 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEA 447 (703)
Q Consensus 369 ~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA 447 (703)
++++|++||.++.+++++.+ |+. .+.+++|+.+++.+++..++...+.. ++..+..++..+.| +.+.+.++++.+
T Consensus 132 ~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~ 207 (319)
T 2chq_A 132 SCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGA 207 (319)
T ss_dssp SEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHH
T ss_pred CCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 68889999999999999999 775 89999999999999999888765443 22336777776655 567776776665
Q ss_pred HHHHHHhCCCCcCHHHHHHHH
Q 005304 448 AILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 448 a~~A~r~~~~~It~~di~~Al 468 (703)
+.. ...|+.+++.+++
T Consensus 208 ~~~-----~~~i~~~~v~~~~ 223 (319)
T 2chq_A 208 AAI-----GEVVDADTIYQIT 223 (319)
T ss_dssp HHS-----SSCBCHHHHHHHT
T ss_pred HHc-----CCCCCHHHHHHHH
Confidence 432 3468888887664
No 63
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.67 E-value=7.9e-17 Score=171.82 Aligned_cols=159 Identities=8% Similarity=0.061 Sum_probs=116.5
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEeechhHHH
Q 005304 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSISGSEFVE 302 (703)
Q Consensus 233 v~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~pfi~is~se~~~ 302 (703)
+.|.++..+.+...+...- ....|.+++|+||||||||++++++++++ ++.+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i--------~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSL--------MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 6677777776666654422 22357789999999999999999999987 35688999865432
Q ss_pred ----------HHhh------hhhhHHHHHHHHH--HhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCc
Q 005304 303 ----------MFVG------VGASRVRDLFKKA--KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 364 (703)
Q Consensus 303 ----------~~~G------~~~~~ir~lF~~A--~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~ 364 (703)
.+.| .....++..|... ....++||||||+|.+. .+..+..|+....
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------------~q~~L~~l~~~~~-- 158 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------------SEKILQYFEKWIS-- 158 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------------CTHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------------cchHHHHHHhccc--
Confidence 2222 2445677888875 35668999999999994 1346666765433
Q ss_pred cCCCCeEEEEecCCccc----ccccccCCCccc-eeeeecCCChhhHHHHHHHHhcC
Q 005304 365 EGNTGIIVIAATNRADI----LDSALLRPGRFD-RQVTVDVPDIRGRTEILKVHGSN 416 (703)
Q Consensus 365 ~~~~~ViVIaaTN~p~~----LD~aLlRpgRfd-r~I~i~~Pd~~eR~~IL~~~l~~ 416 (703)
..+.+++||+.+|..+. |++++++ ||. +.|.|++++.++..+|++.++..
T Consensus 159 ~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 159 SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 23567999999998764 5666677 887 58999999999999999988764
No 64
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=1.6e-15 Score=159.59 Aligned_cols=206 Identities=21% Similarity=0.264 Sum_probs=145.9
Q ss_pred cccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCEEE
Q 005304 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFS 294 (703)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~-----~pfi~ 294 (703)
.+.++.++.+|++++|++++++.+.+.+..- +.| ++||+||||||||++|+++++.+. .+++.
T Consensus 14 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~-~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~ 81 (327)
T 1iqp_A 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG-----------SMP-HLLFAGPPGVGKTTAALALARELFGENWRHNFLE 81 (327)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT-----------CCC-EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred chhhccCCCCHHHhhCCHHHHHHHHHHHHcC-----------CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEE
Confidence 4556778889999999999999888777531 222 599999999999999999999863 45788
Q ss_pred eechhHHHHHhhhhhhHHHHHHHHHH------hcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCC
Q 005304 295 ISGSEFVEMFVGVGASRVRDLFKKAK------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (703)
Q Consensus 295 is~se~~~~~~G~~~~~ir~lF~~A~------~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~ 368 (703)
+++++.... ..+++.+.... ...++||+|||+|.+. . ...+.|+..++.. ..
T Consensus 82 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~---~~~~~L~~~le~~--~~ 139 (327)
T 1iqp_A 82 LNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALT-----------Q---DAQQALRRTMEMF--SS 139 (327)
T ss_dssp EETTCHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----------H---HHHHHHHHHHHHT--TT
T ss_pred eeccccCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----------H---HHHHHHHHHHHhc--CC
Confidence 887764321 11222222211 1447899999999982 1 2345555555532 34
Q ss_pred CeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHH
Q 005304 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEA 447 (703)
Q Consensus 369 ~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA 447 (703)
++++|.+||.++.+++++.+ |+. .+.+++|+.++..++++..+...... ++..+..++..+.| +.+.+.++++.+
T Consensus 140 ~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~ 215 (327)
T 1iqp_A 140 NVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAA 215 (327)
T ss_dssp TEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred CCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 67888899999999999988 776 78999999999999999887655432 22336777777765 677777777655
Q ss_pred HHHHHHhCCCCcCHHHHHHHH
Q 005304 448 AILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 448 a~~A~r~~~~~It~~di~~Al 468 (703)
.. ....|+.+++.+++
T Consensus 216 ~~-----~~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 216 AA-----LDKKITDENVFMVA 231 (327)
T ss_dssp HT-----TCSEECHHHHHHHT
T ss_pred Hh-----cCCCCCHHHHHHHH
Confidence 42 22368887776654
No 65
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.65 E-value=5e-16 Score=149.19 Aligned_cols=153 Identities=25% Similarity=0.409 Sum_probs=111.5
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEe
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~pfi~i 295 (703)
.+.+|++++|.++..+.+.+.+ .. ..+++++|+||||||||++|++++.++ +.+++++
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l---~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 17 RAGKLDPVIGRDTEIRRAIQIL---SR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred hccccchhhcchHHHHHHHHHH---hC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 3557999999998777666554 22 224589999999999999999999986 7899999
Q ss_pred echhHHHH--HhhhhhhHHHHHHHHHHhc-CCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEE
Q 005304 296 SGSEFVEM--FVGVGASRVRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (703)
Q Consensus 296 s~se~~~~--~~G~~~~~ir~lF~~A~~~-aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViV 372 (703)
++..+... +.+.....++.++..+... .|++|||||+|.+...+... ..... ..+.|...++ ..++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~~~~~---~~~~l~~~~~----~~~~~i 155 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA--EGALD---AGNILKPMLA----RGELRC 155 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC--TTSCC---THHHHHHHHH----TTCSCE
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc--ccchH---HHHHHHHHHh----cCCeeE
Confidence 98877642 4455566677888877654 68899999999996544311 11122 2233333333 356889
Q ss_pred EEecCCcc-----cccccccCCCccceeeeecCCC
Q 005304 373 IAATNRAD-----ILDSALLRPGRFDRQVTVDVPD 402 (703)
Q Consensus 373 IaaTN~p~-----~LD~aLlRpgRfdr~I~i~~Pd 402 (703)
|++||.++ .+|+++++ ||+. +.++.|+
T Consensus 156 i~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 156 IGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp EEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred EEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 99999876 58999999 9984 8998886
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.65 E-value=6.3e-16 Score=182.99 Aligned_cols=191 Identities=23% Similarity=0.332 Sum_probs=137.3
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEE
Q 005304 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFS 294 (703)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~pfi~ 294 (703)
..+-+|++++|.++.++.+.+++.. ..+.++||+||||||||++|+++|..+ +.+++.
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred HhhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 4556899999999999988776632 223479999999999999999999986 889998
Q ss_pred eechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEE
Q 005304 295 ISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIA 374 (703)
Q Consensus 295 is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIa 374 (703)
+++ ...|.|....+++.+|..+....|+||||| +. ....+.|+..|+ +..+.+|+
T Consensus 242 ~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~-------------~~~~~~L~~~l~----~~~v~~I~ 296 (758)
T 3pxi_A 242 LDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA-------------IDASNILKPSLA----RGELQCIG 296 (758)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEEE
T ss_pred ecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc-------------hhHHHHHHHHHh----cCCEEEEe
Confidence 888 456788888899999999999999999999 10 113345555554 56799999
Q ss_pred ecCCcc-----cccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCc-----cccHHHHHHh-----CCCCcHHH
Q 005304 375 ATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-----DVSLDVIAMR-----TPGFSGAD 439 (703)
Q Consensus 375 aTN~p~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-----dvdl~~lA~~-----t~G~sgad 439 (703)
+||..+ .+|++++| ||. .|.|+.|+.+++.+|++.+........ +..+..++.. +.++.+..
T Consensus 297 at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ 373 (758)
T 3pxi_A 297 ATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDK 373 (758)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHH
T ss_pred CCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcH
Confidence 999988 69999999 994 699999999999999998776532221 1123333332 45677888
Q ss_pred HHHHHHHHHHHHHHhC
Q 005304 440 LANLLNEAAILAGRRG 455 (703)
Q Consensus 440 L~~lv~eAa~~A~r~~ 455 (703)
...++.+|+..+..+.
T Consensus 374 ai~ll~~a~~~~~~~~ 389 (758)
T 3pxi_A 374 AIDLIDEAGSKVRLRS 389 (758)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhc
Confidence 8889999887766553
No 67
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.65 E-value=1.9e-15 Score=162.34 Aligned_cols=206 Identities=19% Similarity=0.275 Sum_probs=149.9
Q ss_pred cccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 005304 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 291 (703)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p---------- 291 (703)
.++.++.+|++++|++++++.+.+.+..- +.+..+||+||||||||++|+++|+.++..
T Consensus 7 ~~k~rp~~~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 75 (373)
T 1jr3_A 7 ARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 (373)
T ss_dssp HHHTCCCSTTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSS
T ss_pred HHhhCCCchhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 34566778999999999999888877531 335579999999999999999999987542
Q ss_pred --------------EEEeechhHHHHHhhhhhhHHHHHHHHHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHH
Q 005304 292 --------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (703)
Q Consensus 292 --------------fi~is~se~~~~~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~ 353 (703)
++.++.+. ..+...++++++.+.. ..+.||+|||+|.+. ...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~--------------~~~ 135 (373)
T 1jr3_A 76 CDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------------RHS 135 (373)
T ss_dssp SHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC--------------HHH
T ss_pred cHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc--------------HHH
Confidence 22222211 1123346677776642 346899999999982 234
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhC
Q 005304 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (703)
Q Consensus 354 l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t 432 (703)
.+.|+..++.. ..++++|.+|+.++.+.+.+++ |+ ..+.+++|+.++..++++.++...+.. ++..+..++..+
T Consensus 136 ~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~ 210 (373)
T 1jr3_A 136 FNALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 (373)
T ss_dssp HHHHHHHHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHS
T ss_pred HHHHHHHHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHC
Confidence 56666666643 4568888889999999999988 76 688999999999999999887644332 222367788888
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
.| +++++.++++.+...+ ...|+.+++.+++
T Consensus 211 ~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 211 EG-SLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp SS-CHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred CC-CHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 66 7889999988875433 3568998887765
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.65 E-value=6.8e-16 Score=182.67 Aligned_cols=198 Identities=20% Similarity=0.287 Sum_probs=137.5
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhccCCCCc-eEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHHh
Q 005304 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK-GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV 305 (703)
Q Consensus 230 f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~-gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~~ 305 (703)
.++++|++++++.+.+.+...+.... ....|. ++||+||||||||++|+++|..+ +.||++++|+++.+.+.
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLK----DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCS----CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccC----CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 36799999999999998876542211 011233 69999999999999999999987 78999999999987654
Q ss_pred hhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc---------CCCCeEEEEec
Q 005304 306 GVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------GNTGIIVIAAT 376 (703)
Q Consensus 306 G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~---------~~~~ViVIaaT 376 (703)
.. ...++...+...++||||||||.+ +. .+++.|+..|+.-. ...++++|+||
T Consensus 566 ~~----~~~l~~~~~~~~~~vl~lDEi~~~-----------~~---~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 566 TS----GGQLTEKVRRKPYSVVLLDAIEKA-----------HP---DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp CC-------CHHHHHHCSSSEEEEECGGGS-----------CH---HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred cc----cchhhHHHHhCCCeEEEEeCcccc-----------CH---HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 43 222344445566789999999988 22 34555555555321 22468999999
Q ss_pred CCccc------------ccccccCCCccceeeeecCCChhhHHHHHHHHhcCC-------CCCccc---cHHHHHHh--C
Q 005304 377 NRADI------------LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK-------KFDADV---SLDVIAMR--T 432 (703)
Q Consensus 377 N~p~~------------LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~-------~l~~dv---dl~~lA~~--t 432 (703)
|.+.. +.|+|++ ||+..|.|++|+.+++..|++.++... .....+ .++.|+.. .
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~ 705 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVD 705 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCC
T ss_pred CCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCC
Confidence 96543 6788888 999999999999999999998776432 111112 25556553 3
Q ss_pred CCCcHHHHHHHHHHHHHHH
Q 005304 433 PGFSGADLANLLNEAAILA 451 (703)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A 451 (703)
..++.++|+++++++...+
T Consensus 706 ~~~~~R~L~~~i~~~v~~~ 724 (758)
T 3pxi_A 706 LEYGARPLRRAIQKHVEDR 724 (758)
T ss_dssp TTTTTTTHHHHHHHHTHHH
T ss_pred CCCCChHHHHHHHHHHHHH
Confidence 4567788888888765444
No 69
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.65 E-value=9.7e-16 Score=183.71 Aligned_cols=204 Identities=23% Similarity=0.322 Sum_probs=136.6
Q ss_pred CCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEE
Q 005304 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFS 294 (703)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~pfi~ 294 (703)
..+-+|++++|.++..+.+.+++. . ..+.+++|+||||||||++|+++|..+ +.++++
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l~---~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQILL---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHH---C---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred HhcCCCcccCCcHHHHHHHHHHHh---c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 345689999999988777666552 2 224579999999999999999999987 889999
Q ss_pred eechhHH--HHHhhhhhhHHHHHHHHHHhc-CCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeE
Q 005304 295 ISGSEFV--EMFVGVGASRVRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGII 371 (703)
Q Consensus 295 is~se~~--~~~~G~~~~~ir~lF~~A~~~-aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~Vi 371 (703)
++++.+. ..+.|....+++.+|+.+... .|+||||||+|.+.+.+... +.. ...+.|...++ ..++.
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~---g~~---~~~~~L~~~l~----~~~i~ 301 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE---GAV---DAGNMLKPALA----RGELR 301 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------------HHHHH----TTCCC
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc---chH---HHHHHHHHHHh----CCCeE
Confidence 9999887 467788888999999999875 68999999999996543321 111 22333333333 35688
Q ss_pred EEEecCCcc----cccccccCCCccceeeeecCCChhhHHHHHHHHhcC------CCCCccccHHHHHHh-----CCCCc
Q 005304 372 VIAATNRAD----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN------KKFDADVSLDVIAMR-----TPGFS 436 (703)
Q Consensus 372 VIaaTN~p~----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~------~~l~~dvdl~~lA~~-----t~G~s 436 (703)
+|++||.++ .+|++|.| ||+. +.++.|+.+++.+|++.++.. ..+.+ ..+..++.. +..+.
T Consensus 302 ~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~-~al~~~~~ls~r~i~~~~l 377 (854)
T 1qvr_A 302 LIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISD-SAIIAAATLSHRYITERRL 377 (854)
T ss_dssp EEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECH-HHHHHHHHHHHHHCCSSCT
T ss_pred EEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCH-HHHHHHHHHHhhhcccccC
Confidence 999999775 47999999 9985 999999999999999866542 22222 223444443 45677
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 005304 437 GADLANLLNEAAILAGRR 454 (703)
Q Consensus 437 gadL~~lv~eAa~~A~r~ 454 (703)
+.....++.+|+..+..+
T Consensus 378 p~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 378 PDKAIDLIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 888889999888777654
No 70
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=1.3e-15 Score=159.87 Aligned_cols=206 Identities=17% Similarity=0.204 Sum_probs=147.6
Q ss_pred ccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEe
Q 005304 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSI 295 (703)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~pfi~i 295 (703)
+.++.++.+|++++|++++++.+.+.+.. .+.|. ++|+||||+|||++|+++++++ +.+++++
T Consensus 11 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 78 (323)
T 1sxj_B 11 WVEKYRPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLEL 78 (323)
T ss_dssp HHHHTCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEE
T ss_pred HHHhcCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEe
Confidence 34556778899999999999988877642 12344 9999999999999999999985 4568888
Q ss_pred echhHHHHHhhhhhhHHHHHHHHHH-------hcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCC
Q 005304 296 SGSEFVEMFVGVGASRVRDLFKKAK-------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (703)
Q Consensus 296 s~se~~~~~~G~~~~~ir~lF~~A~-------~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~ 368 (703)
++++.. +...++++++... ...++||+|||+|.+. . ...+.|+..++.. ..
T Consensus 79 ~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----------~---~~~~~L~~~le~~--~~ 136 (323)
T 1sxj_B 79 NASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT-----------A---GAQQALRRTMELY--SN 136 (323)
T ss_dssp CTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC-----------H---HHHHTTHHHHHHT--TT
T ss_pred cCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCC-----------H---HHHHHHHHHHhcc--CC
Confidence 876521 2344555665554 2347899999999983 1 2344555555532 35
Q ss_pred CeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHH
Q 005304 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEA 447 (703)
Q Consensus 369 ~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA 447 (703)
++++|.+||.++.+++++.+ |+. .+.+++|+.++..++++.++...+.. ++..+..++..+.| +++.+.++++.+
T Consensus 137 ~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~ 212 (323)
T 1sxj_B 137 STRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQST 212 (323)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred CceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 67888889999999999998 775 89999999999999999877543322 22336778887765 566677777665
Q ss_pred HHHHHHhCCCCcCHHHHHHHHH
Q 005304 448 AILAGRRGKAAISSKEIDDSID 469 (703)
Q Consensus 448 a~~A~r~~~~~It~~di~~Al~ 469 (703)
.... ..|+.+++.+++.
T Consensus 213 ~~~~-----~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 213 VAGH-----GLVNADNVFKIVD 229 (323)
T ss_dssp HHHH-----SSBCHHHHHHHHT
T ss_pred HhcC-----CCcCHHHHHHHHC
Confidence 5321 4688888877653
No 71
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.64 E-value=9.9e-16 Score=157.99 Aligned_cols=207 Identities=20% Similarity=0.276 Sum_probs=122.7
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCEEEeechhHHHHH
Q 005304 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVEMF 304 (703)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~---~pfi~is~se~~~~~ 304 (703)
.+|++++|.+++.+.+.+.+..+.. .+.++||+||||||||++|++++.... .||++++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 4799999999999998887766432 234899999999999999999999874 799999998764321
Q ss_pred -----hhhhhhH-------HHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc-----C-ccC
Q 005304 305 -----VGVGASR-------VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD-----G-FEG 366 (703)
Q Consensus 305 -----~G~~~~~-------ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld-----~-~~~ 366 (703)
.|..... ....|..+ .+++|||||||.+. ...+..+.+++..-. + ...
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~ 138 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP-----------MMVQEKLLRVIEYGELERVGGSQPL 138 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSC-----------HHHHHHHHHHHHHCEECCCCC--CE
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcC-----------HHHHHHHHHHHHhCCeecCCCcccc
Confidence 1211000 01223332 35799999999982 233333444443211 0 011
Q ss_pred CCCeEEEEecCCc-c------cccccccCCCccceeeeecCCChhhHHH----HHHHHh----cCCCCC-----ccccHH
Q 005304 367 NTGIIVIAATNRA-D------ILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHG----SNKKFD-----ADVSLD 426 (703)
Q Consensus 367 ~~~ViVIaaTN~p-~------~LD~aLlRpgRfdr~I~i~~Pd~~eR~~----IL~~~l----~~~~l~-----~dvdl~ 426 (703)
..++.+|+|||.+ + .++++|.+ ||+ .+.+..|+.++|.+ +++.++ ...... .+..+.
T Consensus 139 ~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~-~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~ 215 (265)
T 2bjv_A 139 QVNVRLVCATNADLPAMVNEGTFRADLLD--ALA-FDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARE 215 (265)
T ss_dssp ECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHC-SEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHH
T ss_pred cCCeEEEEecCcCHHHHHHcCCccHHHHH--hhc-CcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHH
Confidence 3468899999974 2 35677777 775 35677777776643 333222 212111 122245
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Q 005304 427 VIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEI 464 (703)
Q Consensus 427 ~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di 464 (703)
.+.......+.++|.++++.+...+. ...|+.+|+
T Consensus 216 ~L~~~~~~gn~reL~~~l~~~~~~~~---~~~i~~~~l 250 (265)
T 2bjv_A 216 TLLNYRWPGNIRELKNVVERSVYRHG---TSDYPLDDI 250 (265)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHHHHHC---CSSSCBCCC
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhCC---CCcCcHHHc
Confidence 55555434578899999999877652 345655544
No 72
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.64 E-value=7.5e-16 Score=182.21 Aligned_cols=200 Identities=18% Similarity=0.259 Sum_probs=139.2
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH-------
Q 005304 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM------- 303 (703)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~------- 303 (703)
++++|++++++.+.+.+...+..-. ...++..++||+||||||||++|+++|..++.+|+.++|+++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~---~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~ 534 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLG---HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCS---CTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccC---CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhc
Confidence 4689999999998887765332100 001233479999999999999999999999999999999998753
Q ss_pred -----HhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccC---------CCC
Q 005304 304 -----FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG---------NTG 369 (703)
Q Consensus 304 -----~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~---------~~~ 369 (703)
|+|.... ..+....+...++||||||||.+ + ..+++.|+..|+.-.- -.+
T Consensus 535 g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~-----------~---~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 598 (758)
T 1r6b_X 535 GAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-----------H---PDVFNILLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_dssp CCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS-----------C---HHHHHHHHHHHHHSEEEETTTEEEECTT
T ss_pred CCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc-----------C---HHHHHHHHHHhcCcEEEcCCCCEEecCC
Confidence 3333221 22344455566799999999987 2 2355666666653210 146
Q ss_pred eEEEEecCCcc-------------------------cccccccCCCccceeeeecCCChhhHHHHHHHHhcCC-------
Q 005304 370 IIVIAATNRAD-------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK------- 417 (703)
Q Consensus 370 ViVIaaTN~p~-------------------------~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~------- 417 (703)
++||+|||.+. .++|+|++ |||..|.|++|+.+++..|++.++...
T Consensus 599 ~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~ 676 (758)
T 1r6b_X 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQK 676 (758)
T ss_dssp EEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 88999999743 67888888 999999999999999999999877521
Q ss_pred C--CC-ccccHHHHHHhC--CCCcHHHHHHHHHHHHHHH
Q 005304 418 K--FD-ADVSLDVIAMRT--PGFSGADLANLLNEAAILA 451 (703)
Q Consensus 418 ~--l~-~dvdl~~lA~~t--~G~sgadL~~lv~eAa~~A 451 (703)
. +. .+..++.++... ..+..++|.++++.+...+
T Consensus 677 ~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~ 715 (758)
T 1r6b_X 677 GVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKP 715 (758)
T ss_dssp TEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHH
T ss_pred CcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHH
Confidence 1 11 112245555432 3456788888888776543
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.62 E-value=6.8e-16 Score=174.16 Aligned_cols=210 Identities=20% Similarity=0.200 Sum_probs=134.6
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcC--CCEEEeechh-HHHHHhhh
Q 005304 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSE-FVEMFVGV 307 (703)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~se-~~~~~~G~ 307 (703)
..++|.+++++.+...+.. ..++||+||||||||++|+++|..++ .+|..++|.- -.+.+.|.
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 4688999988766554421 23799999999999999999999884 4677766642 11222231
Q ss_pred --hhh-HHHHHHHHHHhc---CCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc--------CCCCeEEE
Q 005304 308 --GAS-RVRDLFKKAKEN---APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVI 373 (703)
Q Consensus 308 --~~~-~ir~lF~~A~~~---aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~--------~~~~ViVI 373 (703)
... .-...|..+... .++|||||||+.+. ..+.+.|+..|+... .....++|
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~--------------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI 153 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG--------------PAILNTLLTAINERQFRNGAHVEKIPMRLLV 153 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGGGCC--------------HHHHHHHHHHHHSSEEECSSSEEECCCCEEE
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc--------------HHHHHHHHHHHHHHhccCCCCcCCcchhhhh
Confidence 100 012233322222 46899999998762 234556666664211 11122467
Q ss_pred EecCCc-c--cccccccCCCccceeeeecCCCh-hhHHHHHHHHhcC-------------------------CCCCcccc
Q 005304 374 AATNRA-D--ILDSALLRPGRFDRQVTVDVPDI-RGRTEILKVHGSN-------------------------KKFDADVS 424 (703)
Q Consensus 374 aaTN~p-~--~LD~aLlRpgRfdr~I~i~~Pd~-~eR~~IL~~~l~~-------------------------~~l~~dvd 424 (703)
+|||.+ + ...+++++ ||...+.++.|+. +++..|++.+... ..+++++
T Consensus 154 ~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v- 230 (500)
T 3nbx_X 154 AASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV- 230 (500)
T ss_dssp EEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH-
T ss_pred hccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH-
Confidence 777853 2 23458998 9998999999987 6788998876531 1122111
Q ss_pred HHHHHHh---------CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 005304 425 LDVIAMR---------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (703)
Q Consensus 425 l~~lA~~---------t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~ 472 (703)
.+.++.. ..|.|++.+..+++.|...|..+++..|+.+|+. ++..++
T Consensus 231 ~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL 286 (500)
T 3nbx_X 231 FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCL 286 (500)
T ss_dssp HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTS
T ss_pred HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhh
Confidence 2333322 3588999999999999999999999999999998 444333
No 74
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.60 E-value=1.3e-15 Score=161.42 Aligned_cols=201 Identities=24% Similarity=0.349 Sum_probs=128.7
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHH---
Q 005304 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF--- 304 (703)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~--- 304 (703)
++++|.+.+.+++.+.+..+.. .+.+|||+||||||||++|++++... +.||+.++|+.+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----------SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----------CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 4689999999999888876542 24489999999999999999999854 6899999998764422
Q ss_pred --hhhhh-------hHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc---------C
Q 005304 305 --VGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------G 366 (703)
Q Consensus 305 --~G~~~-------~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~---------~ 366 (703)
.|... ......|+.+. +++|||||||.+. ... ...|+..++... .
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~-----------~~~---q~~Ll~~l~~~~~~~~g~~~~~ 134 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDIS-----------PLM---QVRLLRAIQEREVQRVGSNQTI 134 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCC-----------HHH---HHHHHHHHHSSBCCBTTBCCCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCC-----------HHH---HHHHHHHHhcCEeeecCCcccc
Confidence 22100 01223455553 4699999999982 222 334444444321 1
Q ss_pred CCCeEEEEecCCc--c-----cccccccCCCccceeeeecCCChhhHHH----HHHHHhcC---------CCCCccccHH
Q 005304 367 NTGIIVIAATNRA--D-----ILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHGSN---------KKFDADVSLD 426 (703)
Q Consensus 367 ~~~ViVIaaTN~p--~-----~LD~aLlRpgRfdr~I~i~~Pd~~eR~~----IL~~~l~~---------~~l~~dvdl~ 426 (703)
..++.||+|||.+ + .+++.|.. ||. .+.+..|+.++|.+ ++++++.. ..+++ ..+.
T Consensus 135 ~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~-~a~~ 210 (304)
T 1ojl_A 135 SVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTP-QAMD 210 (304)
T ss_dssp BCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCH-HHHH
T ss_pred cCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCH-HHHH
Confidence 3468999999975 1 23444555 554 66777888776644 44443321 11222 2255
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Q 005304 427 VIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (703)
Q Consensus 427 ~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~ 465 (703)
.+.......+.++|.++++.|...+ ....|+.+|+.
T Consensus 211 ~L~~~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~ 246 (304)
T 1ojl_A 211 LLIHYDWPGNIRELENAIERAVVLL---TGEYISERELP 246 (304)
T ss_dssp HHHHCCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSC
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHhC---CCCcccHHhhh
Confidence 6666663457899999999988765 23456666553
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=1.1e-14 Score=155.88 Aligned_cols=210 Identities=21% Similarity=0.240 Sum_probs=142.3
Q ss_pred cccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----CEEE
Q 005304 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----PFFS 294 (703)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~-----pfi~ 294 (703)
.+.++.++.+|++++|++++++.|...+.. .+.|. ++|+||||||||++|+++|+.+.. .+..
T Consensus 14 ~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 81 (340)
T 1sxj_C 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDE-----------GKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 81 (340)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred chHHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence 456678888999999999999888877642 13344 999999999999999999998632 3566
Q ss_pred eechhHHHHHhhhhhhHHHHHHHHHHh------cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCC
Q 005304 295 ISGSEFVEMFVGVGASRVRDLFKKAKE------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (703)
Q Consensus 295 is~se~~~~~~G~~~~~ir~lF~~A~~------~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~ 368 (703)
+++++.. +...+++.+..... ..+.|++|||+|.+. . ...+.|+..++.. ..
T Consensus 82 ~~~~~~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-----------~---~~~~~L~~~le~~--~~ 139 (340)
T 1sxj_C 82 LNASDDR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----------N---AAQNALRRVIERY--TK 139 (340)
T ss_dssp ECTTSCC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----------H---HHHHHHHHHHHHT--TT
T ss_pred EcCcccc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----------H---HHHHHHHHHHhcC--CC
Confidence 6665421 12334444443321 236899999999982 1 2345566666543 34
Q ss_pred CeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcC--CCCCccccHHHHHHhCCCCcHHHHHHHHHH
Q 005304 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN--KKFDADVSLDVIAMRTPGFSGADLANLLNE 446 (703)
Q Consensus 369 ~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~--~~l~~dvdl~~lA~~t~G~sgadL~~lv~e 446 (703)
.+.+|.+||.++.+.+++++ |+. .+.+..++.++..+++...+.. ..+.++ .+..++..+.| +.+.+.++++.
T Consensus 140 ~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~-~~~~i~~~s~G-~~r~~~~~l~~ 214 (340)
T 1sxj_C 140 NTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPN-AEKALIELSNG-DMRRVLNVLQS 214 (340)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHH-HHHHHHHHHTT-CHHHHHHHTTT
T ss_pred CeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHH
Confidence 56777888999999999999 875 7889999999999999887743 333332 35667766654 45555555555
Q ss_pred HHHHHHHhCCCCcCHHHHHHHH
Q 005304 447 AAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 447 Aa~~A~r~~~~~It~~di~~Al 468 (703)
+...+...+...|+.+++.+++
T Consensus 215 ~~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 215 CKATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp TTTTTCSSSCCCBCHHHHHHHT
T ss_pred HHHhcCCcccccccHHHHHHHh
Confidence 4433322233468888776654
No 76
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.55 E-value=7.3e-16 Score=177.68 Aligned_cols=219 Identities=21% Similarity=0.186 Sum_probs=138.9
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEe----echhHHHH---
Q 005304 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI----SGSEFVEM--- 303 (703)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~i----s~se~~~~--- 303 (703)
..|+|++++|+.+.-.+..- .+........+...++||+||||||||++|+++|+.++.+++.. ++..+...
T Consensus 295 ~~I~G~e~vk~al~~~l~~g-~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG-VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC-CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCC-CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 46889988877653322110 00001111223334899999999999999999999987665542 22222111
Q ss_pred --HhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc-----------CCCCe
Q 005304 304 --FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GNTGI 370 (703)
Q Consensus 304 --~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~-----------~~~~V 370 (703)
+.|... .....+..| ..+|+||||||.+. .. ..+.|+..|+... .+.++
T Consensus 374 ~~~~g~~~-~~~G~l~~A---~~gil~IDEid~l~-----------~~---~q~~Ll~~le~~~i~i~~~g~~~~~~~~~ 435 (595)
T 3f9v_A 374 EKGTGEYY-LEAGALVLA---DGGIAVIDEIDKMR-----------DE---DRVAIHEAMEQQTVSIAKAGIVAKLNARA 435 (595)
T ss_dssp GGGTSSCS-EEECHHHHH---SSSEECCTTTTCCC-----------SH---HHHHHHHHHHSSSEEEESSSSEEEECCCC
T ss_pred cccccccc-ccCCeeEec---CCCcEEeehhhhCC-----------Hh---HhhhhHHHHhCCEEEEecCCcEEEecCce
Confidence 111100 001123333 34799999999982 22 3344454444221 13468
Q ss_pred EEEEecCCcc-------------cccccccCCCccce-eeeecCCChhhHHHHHHHHhcCCC-------CC---------
Q 005304 371 IVIAATNRAD-------------ILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSNKK-------FD--------- 420 (703)
Q Consensus 371 iVIaaTN~p~-------------~LD~aLlRpgRfdr-~I~i~~Pd~~eR~~IL~~~l~~~~-------l~--------- 420 (703)
.||+|||.+. .|+++|++ |||. .+..+.|+.+ ...|.++.+.... +.
T Consensus 436 ~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~ 512 (595)
T 3f9v_A 436 AVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIA 512 (595)
T ss_dssp EEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHH
T ss_pred EEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHH
Confidence 9999999876 89999999 9985 5566777777 7777776654321 00
Q ss_pred ----------ccccHHHHHHh--------------CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 005304 421 ----------ADVSLDVIAMR--------------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (703)
Q Consensus 421 ----------~dvdl~~lA~~--------------t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v 471 (703)
.+...+.|... ..+.|++.+.++++.|...|..+++..|+.+|+.+|+.-+
T Consensus 513 ~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 513 YARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp HHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 11112333332 3578999999999999999999999999999999998754
No 77
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=3.5e-14 Score=151.86 Aligned_cols=196 Identities=16% Similarity=0.200 Sum_probs=133.2
Q ss_pred cccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCC---------
Q 005304 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--------- 290 (703)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~--------- 290 (703)
.|.++.++.+|++++|++++++.+.+.+. . ..+.|. ++|+||+|+|||++++++|+++..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~ 71 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 71 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEec
Confidence 46778888999999999999887766541 1 123455 999999999999999999996421
Q ss_pred --------------------CEEEeechhHHHHHhhhhhhHHHHHHHHHH--------------hcCCeEEEEcCccccc
Q 005304 291 --------------------PFFSISGSEFVEMFVGVGASRVRDLFKKAK--------------ENAPCIVFVDEIDAVG 336 (703)
Q Consensus 291 --------------------pfi~is~se~~~~~~G~~~~~ir~lF~~A~--------------~~aP~ILfIDEID~L~ 336 (703)
+++.++.++... .....+++.++.+. ...|.||+|||++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~ 147 (354)
T 1sxj_E 72 VRQFVTASNRKLELNVVSSPYHLEITPSDMGN----NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT 147 (354)
T ss_dssp --------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC
T ss_pred ceeecccccccceeeeecccceEEecHhhcCC----cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC
Confidence 233333322110 00013455555442 2357799999999972
Q ss_pred ccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcC
Q 005304 337 RQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN 416 (703)
Q Consensus 337 ~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~ 416 (703)
. ...+.|+..++.. ..+..+|.+||.++.+.+.+++ |+ ..+.|++|+.++..++++..+..
T Consensus 148 -----------~---~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~ 208 (354)
T 1sxj_E 148 -----------K---DAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTN 208 (354)
T ss_dssp -----------H---HHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred -----------H---HHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHH
Confidence 2 2344555555543 2357888889999999999998 88 68999999999999999988764
Q ss_pred CCCC-c-cccHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 005304 417 KKFD-A-DVSLDVIAMRTPGFSGADLANLLNEAAIL 450 (703)
Q Consensus 417 ~~l~-~-dvdl~~lA~~t~G~sgadL~~lv~eAa~~ 450 (703)
.++. + +..+..++..+.| +.+++.++++.+...
T Consensus 209 ~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 209 ERIQLETKDILKRIAQASNG-NLRVSLLMLESMALN 243 (354)
T ss_dssp HTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHT
T ss_pred cCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 4332 2 3346788887765 677777877766543
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.54 E-value=1.3e-14 Score=173.90 Aligned_cols=204 Identities=21% Similarity=0.294 Sum_probs=137.8
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHH--
Q 005304 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF-- 304 (703)
Q Consensus 230 f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~-- 304 (703)
+++|+|++++++.+.+.+...+..-. ...++..++||+||||||||++|++++..+ +.+|+.++|+++.+..
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~---~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCS---CSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccC---CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 46789999999999988876432100 001223489999999999999999999988 8899999999876431
Q ss_pred ---hhh-----hhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc---------CC
Q 005304 305 ---VGV-----GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------GN 367 (703)
Q Consensus 305 ---~G~-----~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~---------~~ 367 (703)
.|. +......+....+...++||||||||.+ + ..+++.|+..|+.-. .-
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l-----------~---~~~~~~Ll~~l~~~~~~~~~g~~vd~ 699 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA-----------H---PDVFNILLQILDDGRLTDSHGRTVDF 699 (854)
T ss_dssp GGC--------------CHHHHHHHCSSEEEEESSGGGS-----------C---HHHHHHHHHHHTTTEECCSSSCCEEC
T ss_pred HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc-----------C---HHHHHHHHHHhccCceECCCCCEecc
Confidence 111 1111133444445566789999999987 2 235666666665321 01
Q ss_pred CCeEEEEecCCc--------------------------ccccccccCCCccceeeeecCCChhhHHHHHHHHhcCC----
Q 005304 368 TGIIVIAATNRA--------------------------DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK---- 417 (703)
Q Consensus 368 ~~ViVIaaTN~p--------------------------~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~---- 417 (703)
.+++||+|||.. ..+.|+|+. ||+..+.+.+|+.+++..|++.++...
T Consensus 700 ~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~ 777 (854)
T 1qvr_A 700 RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARL 777 (854)
T ss_dssp TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 368899999972 134566666 999999999999999999998776521
Q ss_pred ---CCC---ccccHHHHHHhCC--CCcHHHHHHHHHHHHHHHH
Q 005304 418 ---KFD---ADVSLDVIAMRTP--GFSGADLANLLNEAAILAG 452 (703)
Q Consensus 418 ---~l~---~dvdl~~lA~~t~--G~sgadL~~lv~eAa~~A~ 452 (703)
... .+..++.|+.... .++.++|.++++.+...+.
T Consensus 778 ~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~ 820 (854)
T 1qvr_A 778 AEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 820 (854)
T ss_dssp HTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHH
T ss_pred HhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHH
Confidence 111 1222566666544 5678999999988876653
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.52 E-value=3e-13 Score=146.98 Aligned_cols=228 Identities=15% Similarity=0.143 Sum_probs=152.4
Q ss_pred ccccccccchHHHHHHHHHH-HHhcCchhhhhccCCCCceEEE--EcCCCChHHHHHHHHHHhc---------CCCEEEe
Q 005304 228 VTFDDVAGVDEAKQDFMEVV-EFLKKPERFTAIGARIPKGVLL--VGPPGTGKTLLAKAIAGEA---------GVPFFSI 295 (703)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v-~~l~~p~~~~~lg~~~p~gvLL--~GPpGTGKT~LArAlA~e~---------~~pfi~i 295 (703)
...++++|.++..+.+.+.+ ....... ...+..++| +||||+|||++++++++++ +.+++++
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGA------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSS------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCC------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 34588999999999998887 6543210 012457999 9999999999999998876 5678899
Q ss_pred echh------HHHHHh---h-------hhhhH-HHHHHHHHH-hcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHH
Q 005304 296 SGSE------FVEMFV---G-------VGASR-VRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (703)
Q Consensus 296 s~se------~~~~~~---G-------~~~~~-ir~lF~~A~-~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~L 357 (703)
+|.. +...+. + ..... ...+.+... ...|+||+|||+|.+...+. .....+..+
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--------~~~~~l~~l 164 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--------IAAEDLYTL 164 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--------SCHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--------cchHHHHHH
Confidence 8743 221111 1 11111 222222222 35589999999999843210 012345555
Q ss_pred HhhhcCccC-C--CCeEEEEecCCcc---ccc---ccccCCCccceeeeecCCChhhHHHHHHHHhcCCC---CCccccH
Q 005304 358 LTEMDGFEG-N--TGIIVIAATNRAD---ILD---SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK---FDADVSL 425 (703)
Q Consensus 358 L~~ld~~~~-~--~~ViVIaaTN~p~---~LD---~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~---l~~dvdl 425 (703)
+..++.... . .++.+|++||.++ .++ +.+.+ +|...+.+++++.++..++++.++.... ...+..+
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~ 242 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHL 242 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHH
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHH
Confidence 555543321 2 5788888887665 344 66666 5655699999999999999987654211 1122336
Q ss_pred HHHHHhCC------CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 005304 426 DVIAMRTP------GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (703)
Q Consensus 426 ~~lA~~t~------G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~ 472 (703)
..++..+. | +++.+.++++.|...|..++...++.+++..++....
T Consensus 243 ~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 243 ELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 67778777 6 5888999999999888888888999999998887643
No 80
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.50 E-value=1.3e-14 Score=136.49 Aligned_cols=112 Identities=21% Similarity=0.294 Sum_probs=81.6
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhhH
Q 005304 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASR 311 (703)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~~ 311 (703)
+++|.+++.+++.+.+..+.. .+.+|||+||||||||++|++++.... ||++++|+++.+.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 588999999999988875432 234799999999999999999999888 99999999876543
Q ss_pred HHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005304 312 VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (703)
Q Consensus 312 ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (703)
...+|+.+. +++|||||||.+. ...+..+.+++.... +.++.+|+|||.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~-----------~~~q~~Ll~~l~~~~----~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYS-----------RNIQTGITFIIGKAE----RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCC-----------HHHHHHHHHHHHHHT----TTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHCC-----------HHHHHHHHHHHHhCC----CCCEEEEEecCCC
Confidence 455666653 4699999999982 233344444444321 4568899999864
No 81
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.48 E-value=4.5e-14 Score=133.06 Aligned_cols=112 Identities=15% Similarity=0.194 Sum_probs=80.9
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHHhhhh
Q 005304 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVG 308 (703)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~~G~~ 308 (703)
+++|.+++.+++.+.+..+... +.+|||+||||||||++|++++... +.||+ ++|+.+.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~----------~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSET----------DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTC----------CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 6889999999998888765432 3479999999999999999999886 78999 999876543
Q ss_pred hhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005304 309 ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (703)
Q Consensus 309 ~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (703)
......|+.+. +++|||||||.+. ...+ ..|+..|.. ...++.+|+|||.+
T Consensus 66 -~~~~~~~~~a~---~g~l~ldei~~l~-----------~~~q---~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 -PQLNDFIALAQ---GGTLVLSHPEHLT-----------REQQ---YHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp -SCHHHHHHHHT---TSCEEEECGGGSC-----------HHHH---HHHHHHHHS--SSCSSCEEEEESSC
T ss_pred -hhhhcHHHHcC---CcEEEEcChHHCC-----------HHHH---HHHHHHHhh--cCCCEEEEEECCcC
Confidence 23455666663 4699999999982 2233 334444432 24467889999864
No 82
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.44 E-value=6.3e-13 Score=153.52 Aligned_cols=220 Identities=21% Similarity=0.330 Sum_probs=133.8
Q ss_pred ccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---EEEeechh
Q 005304 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISGSE 299 (703)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p---fi~is~se 299 (703)
.+.++.+|++++|++.+++.+...+.. ...++|+||||||||++|+++|+..... .+.+.+..
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred ccccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 345677899999999998877766531 1379999999999999999999977432 12221110
Q ss_pred ------------------HHHHHh--------------------------------------hhhhhHHHHHHHH-----
Q 005304 300 ------------------FVEMFV--------------------------------------GVGASRVRDLFKK----- 318 (703)
Q Consensus 300 ------------------~~~~~~--------------------------------------G~~~~~ir~lF~~----- 318 (703)
+.+... .........+|..
T Consensus 99 ~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~ 178 (604)
T 3k1j_A 99 EDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDP 178 (604)
T ss_dssp TCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCC
T ss_pred ccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEech
Confidence 000000 0000011112210
Q ss_pred ------------------HHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc----C------------c
Q 005304 319 ------------------AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD----G------------F 364 (703)
Q Consensus 319 ------------------A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld----~------------~ 364 (703)
.....+.+|||||+|.+ +...+..+..+|..-. + .
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l-----------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~ 247 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATL-----------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTE 247 (604)
T ss_dssp C----CCCCGGGGEECCHHHHTTTSEEEETTGGGS-----------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCS
T ss_pred hhcCCccccccccccCceeeecCCCEEEEechhhC-----------CHHHHHHHHHHHHcCcEEecccccccccccCCCC
Confidence 11224579999999998 2233334444443211 0 1
Q ss_pred cCCCCeEEEEecCCc--ccccccccCCCccc---eeeeecC--C-ChhhHHHHHHHHhcC-------CCCCccccHHHHH
Q 005304 365 EGNTGIIVIAATNRA--DILDSALLRPGRFD---RQVTVDV--P-DIRGRTEILKVHGSN-------KKFDADVSLDVIA 429 (703)
Q Consensus 365 ~~~~~ViVIaaTN~p--~~LD~aLlRpgRfd---r~I~i~~--P-d~~eR~~IL~~~l~~-------~~l~~dvdl~~lA 429 (703)
....++.||++||+. +.++++|++ ||+ ..+.++. + .......+++...+. ..++++ .+..+.
T Consensus 248 ~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~e-Al~~Li 324 (604)
T 3k1j_A 248 PVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKE-AVEEIV 324 (604)
T ss_dssp CEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHH-HHHHHH
T ss_pred ccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHH-HHHHHH
Confidence 112368899999986 689999999 986 3444432 2 233345555433221 122222 234444
Q ss_pred H---hCCCC------cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 005304 430 M---RTPGF------SGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (703)
Q Consensus 430 ~---~t~G~------sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~ 470 (703)
. +..|- +.+++.++++.|...|..+++..|+.+|+.+|+.+
T Consensus 325 ~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 325 REAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 3 23553 79999999999999999999999999999999964
No 83
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.41 E-value=2.1e-13 Score=170.81 Aligned_cols=152 Identities=19% Similarity=0.248 Sum_probs=111.1
Q ss_pred CCccccccccchHHHHHHHHHHHH-hc----------Cchhhhh------ccCC----------CCce--EEEEcCCCCh
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEF-LK----------KPERFTA------IGAR----------IPKG--VLLVGPPGTG 276 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~-l~----------~p~~~~~------lg~~----------~p~g--vLL~GPpGTG 276 (703)
..++|+|+.|.+++|+++.+.+.+ ++ .++.|+. .|.. +|+| +|||||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 448999999999999999998877 42 2556665 3443 6677 9999999999
Q ss_pred HHHHHHHHHHhc---CCCEEEeechhHH------------HHHhhh----hhhHHHHHHHHHHhcCCeEEEEcCcccccc
Q 005304 277 KTLLAKAIAGEA---GVPFFSISGSEFV------------EMFVGV----GASRVRDLFKKAKENAPCIVFVDEIDAVGR 337 (703)
Q Consensus 277 KT~LArAlA~e~---~~pfi~is~se~~------------~~~~G~----~~~~ir~lF~~A~~~aP~ILfIDEID~L~~ 337 (703)
||+||++++.+. +-|.++++..+.. +.+++. +++.++.+|..|+..+||+||+|++|+|.+
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999998866 6677777776533 445566 788999999999999999999999999998
Q ss_pred cCC---CCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 338 QRG---TGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 338 ~r~---~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
.+. ........-..+.++++|.+|++.....+|+|| +||+
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1217 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eecc
Confidence 842 211111234556899999999998877888888 6776
No 84
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.34 E-value=1.1e-11 Score=132.80 Aligned_cols=159 Identities=18% Similarity=0.200 Sum_probs=113.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC------------------------EEEeechhHHHHHhhhhhhHHHHHHH
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------------------------FFSISGSEFVEMFVGVGASRVRDLFK 317 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~p------------------------fi~is~se~~~~~~G~~~~~ir~lF~ 317 (703)
+.|+.+||+||||+|||++|+++|+.+.++ ++.++..+ .-...+.+.++++++
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~---~~~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK---GKNTLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---TCSSBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---cCCCCCHHHHHHHHH
Confidence 456789999999999999999999987543 22222210 001123456778877
Q ss_pred HHHh----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccc
Q 005304 318 KAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 393 (703)
Q Consensus 318 ~A~~----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfd 393 (703)
.+.. ..+.|++|||+|.+. ....|.|+..++. +..++++|.+||.++.+.+.+++ |+.
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~--------------~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc~ 160 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLT--------------DAAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RCR 160 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBC--------------HHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TSE
T ss_pred HHhhccccCCcEEEEECchhhcC--------------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cce
Confidence 7643 236899999999982 2356778888874 34568888889999999999999 774
Q ss_pred eeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHH
Q 005304 394 RQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEA 447 (703)
Q Consensus 394 r~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA 447 (703)
.+.+++|+.++..++++... .+ ++..+..++..+.| +.+.+.++++.+
T Consensus 161 -~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~~~ 208 (334)
T 1a5t_A 161 -LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQGD 208 (334)
T ss_dssp -EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTSSH
T ss_pred -eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhccc
Confidence 79999999999999998876 22 23335677777765 566666666544
No 85
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.32 E-value=4.8e-12 Score=107.15 Aligned_cols=76 Identities=24% Similarity=0.450 Sum_probs=72.2
Q ss_pred cCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 005304 399 DVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG 474 (703)
Q Consensus 399 ~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~~g 474 (703)
|+||.++|.+||+.|+++.++..++|+..||..|+||||+||.++|++|++.|.+++...|+++||..|++++...
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 6899999999999999999988899999999999999999999999999999999999999999999999998653
No 86
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.31 E-value=4.7e-12 Score=109.57 Aligned_cols=78 Identities=23% Similarity=0.433 Sum_probs=73.9
Q ss_pred eecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 005304 397 TVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG 474 (703)
Q Consensus 397 ~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~~g 474 (703)
.-.+||.++|.+||+.++++.++..++|++.||..|+||||+||.++|++|++.|.+++...|+++||.+|++++.++
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 446899999999999999999998999999999999999999999999999999999999999999999999998765
No 87
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.29 E-value=7.8e-12 Score=108.57 Aligned_cols=78 Identities=22% Similarity=0.483 Sum_probs=70.0
Q ss_pred ChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCcCCcc
Q 005304 402 DIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTV 479 (703)
Q Consensus 402 d~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~~g~~~~~ 479 (703)
|.++|.+||+.|+++.++..++|+..||..|+||||+||.++|++|++.|.+++...|+++||..|++++..+.+++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~ 79 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFS 79 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCccccc
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999887654
No 88
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.26 E-value=1.5e-11 Score=134.62 Aligned_cols=212 Identities=18% Similarity=0.275 Sum_probs=131.4
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHH---
Q 005304 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM--- 303 (703)
Q Consensus 230 f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~--- 303 (703)
+++++|.+...+++.+.+..+.... .+|+|+|++||||+++|+++.... +.||+.++|+.+.+.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~----------~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAE----------CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCC----------SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCCC----------CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 5678888888888888887765443 369999999999999999997765 479999999876542
Q ss_pred --Hhhhhh-------hHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc--Ccc----CCC
Q 005304 304 --FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE----GNT 368 (703)
Q Consensus 304 --~~G~~~-------~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~~----~~~ 368 (703)
..|... .....+|+.|.. .+||||||+.+ +...+..+.++|..-. ... ...
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 271 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRKEIEV 271 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceeec
Confidence 222110 012345666543 59999999998 3344555555554311 111 123
Q ss_pred CeEEEEecCCcc--cccccccCCCccce--eeeecCCChhhHHH----HHHH----HhcCCCCC-cccc---HHHHHHhC
Q 005304 369 GIIVIAATNRAD--ILDSALLRPGRFDR--QVTVDVPDIRGRTE----ILKV----HGSNKKFD-ADVS---LDVIAMRT 432 (703)
Q Consensus 369 ~ViVIaaTN~p~--~LD~aLlRpgRfdr--~I~i~~Pd~~eR~~----IL~~----~l~~~~l~-~dvd---l~~lA~~t 432 (703)
++.+|+|||..- .+.....|+..|.+ .+.+..|..++|.+ ++++ +..+.... ..++ +..+....
T Consensus 272 ~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~ 351 (387)
T 1ny5_A 272 NVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYP 351 (387)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSC
T ss_pred cEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC
Confidence 688999999631 22222222222222 56788899988754 2222 22221111 1122 44455444
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
.-.+.++|+|++++|...+ ....|+.+|+...+
T Consensus 352 wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 352 WYGNVRELKNVIERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp CTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHhh
Confidence 3347789999999998766 33578988886543
No 89
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.26 E-value=3.2e-11 Score=127.90 Aligned_cols=142 Identities=13% Similarity=0.149 Sum_probs=105.8
Q ss_pred cchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc------CCCEEEeechhHHHHHhhhh
Q 005304 235 GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSISGSEFVEMFVGVG 308 (703)
Q Consensus 235 G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~------~~pfi~is~se~~~~~~G~~ 308 (703)
|++++.+.|...++.-+ +..+|||||||+|||++|+++|+.+ ...++.++.+. ...+
T Consensus 1 g~~~~~~~L~~~i~~~~------------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE------------GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIG 63 (305)
T ss_dssp ---CHHHHHHHHHHTCS------------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBC
T ss_pred ChHHHHHHHHHHHHCCC------------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCC
Confidence 56677777776664221 2379999999999999999999864 34677777542 0234
Q ss_pred hhHHHHHHHHHHhcC----CeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccc
Q 005304 309 ASRVRDLFKKAKENA----PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (703)
Q Consensus 309 ~~~ir~lF~~A~~~a----P~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 384 (703)
...+|++++.+.... ..|++|||+|.+. ....|.||..|+.. ..++++|.+||.++.+.+
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt--------------~~a~naLLk~LEep--~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMT--------------QQAANAFLKALEEP--PEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC--------------HHHHHHTHHHHHSC--CTTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhC--------------HHHHHHHHHHHhCC--CCCeEEEEEECChHhChH
Confidence 456888888875332 3699999999992 23567888888853 456788888888999999
Q ss_pred cccCCCccceeeeecCCChhhHHHHHHHHh
Q 005304 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHG 414 (703)
Q Consensus 385 aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l 414 (703)
++++ | .+.+++|+.++..++++..+
T Consensus 128 tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 128 TIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 9999 7 78999999999999998876
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.21 E-value=6.4e-11 Score=114.74 Aligned_cols=134 Identities=17% Similarity=0.221 Sum_probs=83.3
Q ss_pred CCCccccccccchH-HHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEeechh
Q 005304 225 NTGVTFDDVAGVDE-AKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSE 299 (703)
Q Consensus 225 ~~~~~f~dv~G~de-~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~se 299 (703)
..+.+|+++++.+. .++.+..+..++.+.. ...+++++|+||||||||+|++++++.+ |..++++++.+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~ 77 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVHNFN------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD 77 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHHSCC------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHHhcc------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 45678999987543 3333333444443322 2235689999999999999999999876 77888899988
Q ss_pred HHHHHhhhhhh-HHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 300 FVEMFVGVGAS-RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 300 ~~~~~~G~~~~-~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
+.+.+...... ....+++.. ..|.+|+|||++..+ .+......+..++.... ..+..+|.+||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~---------~~~~~~~~l~~ll~~~~----~~~~~ii~tsn~ 142 (180)
T 3ec2_A 78 LIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER---------LSDWQRELISYIITYRY----NNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC---------CCHHHHHHHHHHHHHHH----HTTCEEEEECCC
T ss_pred HHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc---------CCHHHHHHHHHHHHHHH----HcCCCEEEEcCC
Confidence 87654322110 011222222 357899999998652 23445556666665432 124567777876
Q ss_pred c
Q 005304 379 A 379 (703)
Q Consensus 379 p 379 (703)
+
T Consensus 143 ~ 143 (180)
T 3ec2_A 143 S 143 (180)
T ss_dssp C
T ss_pred C
Confidence 4
No 91
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.13 E-value=2.3e-10 Score=149.21 Aligned_cols=138 Identities=20% Similarity=0.331 Sum_probs=98.3
Q ss_pred CceEEEEcCCCChHHHHH-HHHHHhcCCCEEEeechhHHHHHhhhhhhHHHHHHHHHH---------------hcCCeEE
Q 005304 264 PKGVLLVGPPGTGKTLLA-KAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAK---------------ENAPCIV 327 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LA-rAlA~e~~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~---------------~~aP~IL 327 (703)
.+++||+||||||||++| ++++...+.+++.++++...+ ...+...++... ...++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 358999999999999999 555555578888888875432 233444444321 1235799
Q ss_pred EEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCC--------CCeEEEEecCCcc-----cccccccCCCccce
Q 005304 328 FVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN--------TGIIVIAATNRAD-----ILDSALLRPGRFDR 394 (703)
Q Consensus 328 fIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~--------~~ViVIaaTN~p~-----~LD~aLlRpgRfdr 394 (703)
||||||.....+. +.......+.++++ ..++... .++.+|||+|+|. .|+++++| || .
T Consensus 1341 FiDEinmp~~d~y-----g~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~ 1411 (2695)
T 4akg_A 1341 FCDEINLPKLDKY-----GSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-A 1411 (2695)
T ss_dssp EEETTTCSCCCSS-----SCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-E
T ss_pred Eeccccccccccc-----CchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-e
Confidence 9999997533321 23345566777664 2232211 2589999999994 89999999 89 7
Q ss_pred eeeecCCChhhHHHHHHHHhcC
Q 005304 395 QVTVDVPDIRGRTEILKVHGSN 416 (703)
Q Consensus 395 ~I~i~~Pd~~eR~~IL~~~l~~ 416 (703)
.+.++.|+.+++..|+..+++.
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999887653
No 92
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.08 E-value=1.8e-10 Score=98.58 Aligned_cols=75 Identities=23% Similarity=0.366 Sum_probs=69.0
Q ss_pred ChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCcC
Q 005304 402 DIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME 476 (703)
Q Consensus 402 d~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~~g~~ 476 (703)
|.++|.+||+.|+++.++..++|+..||..|+||||+||.++|++|++.|.+++...|+++||..|+.++.+...
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCch
Confidence 678999999999999998889999999999999999999999999999999999999999999999999876643
No 93
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.07 E-value=3.1e-10 Score=111.66 Aligned_cols=103 Identities=22% Similarity=0.263 Sum_probs=66.8
Q ss_pred CCccccccccchHHHH-HHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHH
Q 005304 226 TGVTFDDVAGVDEAKQ-DFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 301 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~-~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~ 301 (703)
...+|+++++.+...+ .+..+..++..... ...|++++|+||||||||++|+++++++ +.+++++++.++.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 3568999998774333 33333344332210 0124799999999999999999999877 7899999999887
Q ss_pred HHHhhhh-hhHHHHHHHHHHhcCCeEEEEcCcccc
Q 005304 302 EMFVGVG-ASRVRDLFKKAKENAPCIVFVDEIDAV 335 (703)
Q Consensus 302 ~~~~G~~-~~~ir~lF~~A~~~aP~ILfIDEID~L 335 (703)
..+.... ...+..+++.... +.+|+|||++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 95 RELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 6543211 1112333444332 359999999775
No 94
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.96 E-value=1.7e-10 Score=98.63 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=54.6
Q ss_pred hhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCcC
Q 005304 404 RGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME 476 (703)
Q Consensus 404 ~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~~g~~ 476 (703)
++|.+||+.|+++.++..++|+..||..|+||||+||.++|++|++.|.+++...|+++||..|++++..+..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~ 73 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDN 73 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC---
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcC
Confidence 4789999999999988889999999999999999999999999999999999999999999999998865543
No 95
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.95 E-value=1.2e-08 Score=107.86 Aligned_cols=190 Identities=15% Similarity=0.107 Sum_probs=117.3
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhH-----
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF----- 300 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~----- 300 (703)
+....+.++|.++..+.|.+ + .. ..++|+||+|+|||+|++.++++.+.+++++++...
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l---~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-L---RA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNY 71 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-T---CS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSC
T ss_pred CCCCHHHhcChHHHHHHHHH-h---cC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccC
Confidence 44466789999988777665 4 22 279999999999999999999998878888887643
Q ss_pred ------HHHHhhh-----------------------------------hhhHHHHHHHHHHhc--CCeEEEEcCcccccc
Q 005304 301 ------VEMFVGV-----------------------------------GASRVRDLFKKAKEN--APCIVFVDEIDAVGR 337 (703)
Q Consensus 301 ------~~~~~G~-----------------------------------~~~~ir~lF~~A~~~--aP~ILfIDEID~L~~ 337 (703)
...+... ....+..+++...+. .|.+|+|||+|.+..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 1110000 012344555555443 389999999999843
Q ss_pred cCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccccccc-----cc--CCCccceeeeecCCChhhHHHHH
Q 005304 338 QRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSA-----LL--RPGRFDRQVTVDVPDIRGRTEIL 410 (703)
Q Consensus 338 ~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~a-----Ll--RpgRfdr~I~i~~Pd~~eR~~IL 410 (703)
.. .......+..+... ..++.+|.+++....+... .. -.||+...+.+++.+.++..+++
T Consensus 152 ~~-------~~~~~~~l~~~~~~------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l 218 (357)
T 2fna_A 152 LR-------GVNLLPALAYAYDN------LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFL 218 (357)
T ss_dssp CT-------TCCCHHHHHHHHHH------CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHH
T ss_pred cC-------chhHHHHHHHHHHc------CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHH
Confidence 10 11122333333332 1246666666543222211 00 12366678999999999999999
Q ss_pred HHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHH
Q 005304 411 KVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNE 446 (703)
Q Consensus 411 ~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~e 446 (703)
...+.......+. ...+...+.|+ +.-+..++..
T Consensus 219 ~~~~~~~~~~~~~-~~~i~~~t~G~-P~~l~~~~~~ 252 (357)
T 2fna_A 219 RRGFQEADIDFKD-YEVVYEKIGGI-PGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHTCCCCC-HHHHHHHHCSC-HHHHHHHHHH
T ss_pred HHHHHHcCCCCCc-HHHHHHHhCCC-HHHHHHHHHH
Confidence 8876432222222 37788888875 6666666544
No 96
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.95 E-value=1.3e-09 Score=120.97 Aligned_cols=213 Identities=17% Similarity=0.116 Sum_probs=122.4
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHH-HHhcCCCEEEeechhH-HHHHhhh---
Q 005304 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAI-AGEAGVPFFSISGSEF-VEMFVGV--- 307 (703)
Q Consensus 233 v~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAl-A~e~~~pfi~is~se~-~~~~~G~--- 307 (703)
|.|++.+|..+.-.+. ....+ .+-.-+|||.|+||| ||++|+++ +.-+.. .++.++..- .....+.
T Consensus 215 I~G~e~vK~aLll~L~--GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR-~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLF--SCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPR-GVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHT--TCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSS-EEEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHc--CCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCC-eEEecCCCCCccCceEEEEc
Confidence 8999998776554331 11111 112237999999999 99999999 665533 333322100 0001100
Q ss_pred --hhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcC-------ccCCCCeEEEEecCC
Q 005304 308 --GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-------FEGNTGIIVIAATNR 378 (703)
Q Consensus 308 --~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~-------~~~~~~ViVIaaTN~ 378 (703)
+...-...+..|.. .|+|||||+.+- ..++..|++.|+. ..-+..+.||||+|.
T Consensus 286 ~tG~~~~~G~l~LAdg---Gvl~lDEIn~~~--------------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP 348 (506)
T 3f8t_A 286 DRGWALRAGAAVLADG---GILAVDHLEGAP--------------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAINP 348 (506)
T ss_dssp SSSEEEEECHHHHTTT---SEEEEECCTTCC--------------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECC
T ss_pred CCCcccCCCeeEEcCC---CeeehHhhhhCC--------------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCc
Confidence 00000112333322 599999999982 2344455555542 222457899999998
Q ss_pred cc-----------cccccccCCCccceee-eecCCChhhHH---------HHHH---HHhc----CCCCCcccc--HHHH
Q 005304 379 AD-----------ILDSALLRPGRFDRQV-TVDVPDIRGRT---------EILK---VHGS----NKKFDADVS--LDVI 428 (703)
Q Consensus 379 p~-----------~LD~aLlRpgRfdr~I-~i~~Pd~~eR~---------~IL~---~~l~----~~~l~~dvd--l~~l 428 (703)
.+ .|++++++ |||..+ .++.|+.+.-. +.++ .+++ ...+++++. +..+
T Consensus 349 ~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 349 GEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp CC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHH
T ss_pred ccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHH
Confidence 65 78889999 998743 45666543311 1111 1222 222222211 0000
Q ss_pred ------H--H------hCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 005304 429 ------A--M------RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVA 473 (703)
Q Consensus 429 ------A--~------~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~v~~ 473 (703)
. . ...|.|++.+..+++-|...|.-+++..|+.+|+.+|+.-+..
T Consensus 427 y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 427 YETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDW 485 (506)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHH
T ss_pred HHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHH
Confidence 0 0 2558999999999999999999999999999999999875443
No 97
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.93 E-value=7.2e-08 Score=101.59 Aligned_cols=192 Identities=20% Similarity=0.190 Sum_probs=115.7
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH----
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV---- 301 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~---- 301 (703)
+...-+.++|.++..+.|.+.+.. | +.++|+||+|+|||+|++.++++.+ ++++++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 344567899999998888877653 1 3799999999999999999999885 7788775432
Q ss_pred --------HHHh--------------------hhh----hhHHHHHHHHH----HhcCCeEEEEcCcccccccCCCCCCC
Q 005304 302 --------EMFV--------------------GVG----ASRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGG 345 (703)
Q Consensus 302 --------~~~~--------------------G~~----~~~ir~lF~~A----~~~aP~ILfIDEID~L~~~r~~~~~~ 345 (703)
..+. +.. ...+.++++.. ....|.+|+|||++.+..... .
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~----~ 146 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS----R 146 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT----T
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc----c
Confidence 1110 000 01223333322 223489999999999842100 0
Q ss_pred CChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccccc---------ccccCCCccceeeeecCCChhhHHHHHHHHhcC
Q 005304 346 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD---------SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN 416 (703)
Q Consensus 346 ~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD---------~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~ 416 (703)
........+..++.. . .++.+|.++.....++ ..+. ||+...+.+.+.+.++-.+++...+..
T Consensus 147 ~~~~~~~~L~~~~~~---~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~ 218 (350)
T 2qen_A 147 GGKELLALFAYAYDS---L---PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFRE 218 (350)
T ss_dssp TTHHHHHHHHHHHHH---C---TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHh---c---CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHH
Confidence 111222333333322 1 3556666654422121 1122 366668899999999999999887654
Q ss_pred CCCC-ccccHHHHHHhCCCCcHHHHHHHHHH
Q 005304 417 KKFD-ADVSLDVIAMRTPGFSGADLANLLNE 446 (703)
Q Consensus 417 ~~l~-~dvdl~~lA~~t~G~sgadL~~lv~e 446 (703)
.... .+.....+...+.|+ +.-+..++..
T Consensus 219 ~~~~~~~~~~~~i~~~tgG~-P~~l~~~~~~ 248 (350)
T 2qen_A 219 VNLDVPENEIEEAVELLDGI-PGWLVVFGVE 248 (350)
T ss_dssp TTCCCCHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 3322 223466778888875 5556655543
No 98
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.91 E-value=2.4e-09 Score=116.34 Aligned_cols=193 Identities=22% Similarity=0.366 Sum_probs=117.3
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEeechhHHHH-----
Q 005304 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFVEM----- 303 (703)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~--pfi~is~se~~~~----- 303 (703)
.+++|.+....++.+.+..+.... ..++++|++||||+++|+++....+. +|+.++|+.+.+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~----------~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSK----------APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSC----------SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccc----------hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 467899998888888877655432 26999999999999999999876643 3999999865432
Q ss_pred Hhhhhh-------hHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhc--CccC----CCCe
Q 005304 304 FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG----NTGI 370 (703)
Q Consensus 304 ~~G~~~-------~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld--~~~~----~~~V 370 (703)
+.|... ..-...|+.|.. .+||||||+.+ +...+..+.++|+.-. .... ..++
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 264 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGEL-----------DQRVQAKLLRVLETGSFTRLGGNQKIEVDI 264 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGS-----------CHHHHHHHHHHHHHSEECCBTCCCBEECCC
T ss_pred hcCccccccCCcccccCChHhhcCC---CeEEecChhhC-----------CHHHHHHHHHHHHhCCcccCCCCcceeeee
Confidence 222111 111235666543 48999999999 3344555555554321 1111 2257
Q ss_pred EEEEecCCcccccccccCCCccc-----e--eeeecCCChhhHHH----HHHHHhc----CCC-----CCccccHHHHHH
Q 005304 371 IVIAATNRADILDSALLRPGRFD-----R--QVTVDVPDIRGRTE----ILKVHGS----NKK-----FDADVSLDVIAM 430 (703)
Q Consensus 371 iVIaaTN~p~~LD~aLlRpgRfd-----r--~I~i~~Pd~~eR~~----IL~~~l~----~~~-----l~~dvdl~~lA~ 430 (703)
.+|+|||.. +. .....|+|. | .+.+.+|..++|.+ ++++++. ... ++++ .+..|..
T Consensus 265 rii~at~~~--l~-~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~L~~ 340 (368)
T 3dzd_A 265 RVISATNKN--LE-EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEE-TKEYLMK 340 (368)
T ss_dssp EEEEEESSC--HH-HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHH-HHHHHHT
T ss_pred EEEEecCCC--HH-HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-HHHHHHh
Confidence 899999952 11 122233332 2 66788888888743 2333321 111 2222 2455555
Q ss_pred hCCCCcHHHHHHHHHHHHHHH
Q 005304 431 RTPGFSGADLANLLNEAAILA 451 (703)
Q Consensus 431 ~t~G~sgadL~~lv~eAa~~A 451 (703)
...-.+.++|+|+++.|...+
T Consensus 341 ~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 341 QEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CCCTTHHHHHHHHHHHHHHTC
T ss_pred CCCCcHHHHHHHHHHHHHHhC
Confidence 553346788999999887654
No 99
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.84 E-value=6.3e-09 Score=98.67 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=67.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCC
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRG 340 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~ 340 (703)
...++|+||+|+|||+|++++++.+ |..++++++.++... +....|.+|+|||++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~---- 96 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG---- 96 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC----
Confidence 3479999999999999999999977 778899988776532 112357899999998872
Q ss_pred CCCCCCChHHHHHHHHHHhhhcCccCCCCe-EEEEecC-Cccccc--ccccCCCccceeeee
Q 005304 341 TGIGGGNDEREQTLNQLLTEMDGFEGNTGI-IVIAATN-RADILD--SALLRPGRFDRQVTV 398 (703)
Q Consensus 341 ~~~~~~~~e~~~~l~~LL~~ld~~~~~~~V-iVIaaTN-~p~~LD--~aLlRpgRfdr~I~i 398 (703)
.. .++.+..++..+. .+... ++| +|| .|+.+. +.|.+ |+..-..+
T Consensus 97 ------~~-~~~~l~~li~~~~---~~g~~~iii-ts~~~p~~l~~~~~L~S--Rl~~g~~~ 145 (149)
T 2kjq_A 97 ------NE-EQALLFSIFNRFR---NSGKGFLLL-GSEYTPQQLVIREDLRT--RMAYCLVY 145 (149)
T ss_dssp ------SH-HHHHHHHHHHHHH---HHTCCEEEE-EESSCTTTSSCCHHHHH--HGGGSEEC
T ss_pred ------hH-HHHHHHHHHHHHH---HcCCcEEEE-ECCCCHHHccccHHHHH--HHhcCeeE
Confidence 11 2444555555433 12222 444 555 455443 67777 77654433
No 100
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.83 E-value=3.3e-09 Score=112.51 Aligned_cols=101 Identities=22% Similarity=0.320 Sum_probs=63.3
Q ss_pred CccccccccchHH-HHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEeechhHH
Q 005304 227 GVTFDDVAGVDEA-KQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFV 301 (703)
Q Consensus 227 ~~~f~dv~G~de~-k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~se~~ 301 (703)
+.+|+++.+.+.. ...+..+..++.... ...+++++|+||||||||+||+++|.++ +.++++++++++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYP------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCS------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhcc------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 4689999876532 223333334443221 1124689999999999999999998754 5899999999887
Q ss_pred HHHhhhh-hhHHHHHHHHHHhcCCeEEEEcCcccc
Q 005304 302 EMFVGVG-ASRVRDLFKKAKENAPCIVFVDEIDAV 335 (703)
Q Consensus 302 ~~~~G~~-~~~ir~lF~~A~~~aP~ILfIDEID~L 335 (703)
..+.... .......+.... .+.+|||||++..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 7554321 111222233322 3469999999765
No 101
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.83 E-value=1.2e-09 Score=116.11 Aligned_cols=121 Identities=18% Similarity=0.196 Sum_probs=72.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeec--hhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCccccccc
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG--SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQ 338 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~--se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~ 338 (703)
....+.++|+||||||||+||.++|.+.+.++.+++. .+..+.+.......+..+++...+.. +||||+++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGA 197 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccc
Confidence 3334557999999999999999999876555444444 33222222233344445555555443 9999999999543
Q ss_pred CCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccc
Q 005304 339 RGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL 386 (703)
Q Consensus 339 r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aL 386 (703)
...... .....+.+.+++..|.++....++.+|.++| +...|+++
T Consensus 198 ~~~~s~--~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 198 AGGNTT--SGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred cccccc--cchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 322100 1112355677777777666666788898888 55556554
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.64 E-value=2.2e-08 Score=99.77 Aligned_cols=130 Identities=23% Similarity=0.269 Sum_probs=83.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHH--------hcC-CCEEEeechhHHHHHh----------hh-----hhhHHHHHHHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAG--------EAG-VPFFSISGSEFVEMFV----------GV-----GASRVRDLFKKA 319 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~--------e~~-~pfi~is~se~~~~~~----------G~-----~~~~ir~lF~~A 319 (703)
+--.|++|+||||||++|.+.+. +.| .++++.++.++.-... .. ....+.+++..
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~- 83 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK- 83 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-
Confidence 44689999999999999988643 345 7888787776542111 11 11222222211
Q ss_pred HhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeec
Q 005304 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 399 (703)
Q Consensus 320 ~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~ 399 (703)
....++||+|||++.+.+.+..+. +.. .++..+.. ....++-+|.+|+.++.|+.++++ |++.++++.
T Consensus 84 ~~~~~~vliIDEAq~l~~~~~~~~-----e~~----rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~ 151 (199)
T 2r2a_A 84 PENIGSIVIVDEAQDVWPARSAGS-----KIP----ENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIA 151 (199)
T ss_dssp GGGTTCEEEETTGGGTSBCCCTTC-----CCC----HHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEE
T ss_pred cccCceEEEEEChhhhccCccccc-----hhH----HHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEc
Confidence 234578999999999976553211 111 23344432 234466778888889999999888 999999998
Q ss_pred CCChhhH
Q 005304 400 VPDIRGR 406 (703)
Q Consensus 400 ~Pd~~eR 406 (703)
.|....+
T Consensus 152 ~~~~~~~ 158 (199)
T 2r2a_A 152 SNKMGMR 158 (199)
T ss_dssp ECSSCCE
T ss_pred CcccCcc
Confidence 8765544
No 103
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.61 E-value=5.4e-07 Score=118.07 Aligned_cols=165 Identities=16% Similarity=0.190 Sum_probs=110.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCC
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 344 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~ 344 (703)
.|+++.||+|||||.+++++|+.+|.+++.++|++-.+ ...+..+|..+... ++++++|||+.+
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~--------- 709 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRL--------- 709 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSS---------
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhc---------
Confidence 48999999999999999999999999999999987543 24456677766544 479999999998
Q ss_pred CCChHHHHHHHHHHhhhc-------------C--ccCCCCeEEEEecCC----cccccccccCCCccceeeeecCCChhh
Q 005304 345 GGNDEREQTLNQLLTEMD-------------G--FEGNTGIIVIAATNR----ADILDSALLRPGRFDRQVTVDVPDIRG 405 (703)
Q Consensus 345 ~~~~e~~~~l~~LL~~ld-------------~--~~~~~~ViVIaaTN~----p~~LD~aLlRpgRfdr~I~i~~Pd~~e 405 (703)
..+....+++.+..+. | +.-+.++.|++|.|. ...|+++|++ || +.+.+..||.+.
T Consensus 710 --~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~ 784 (2695)
T 4akg_A 710 --DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGT 784 (2695)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHH
T ss_pred --ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHH
Confidence 3344444444333221 1 122345778888884 4578899988 88 789999999998
Q ss_pred HHHHHHHHhcCCCCCccc-----cHH-HHHHhCC-----CCcHHHHHHHHHHHHHHH
Q 005304 406 RTEILKVHGSNKKFDADV-----SLD-VIAMRTP-----GFSGADLANLLNEAAILA 451 (703)
Q Consensus 406 R~~IL~~~l~~~~l~~dv-----dl~-~lA~~t~-----G~sgadL~~lv~eAa~~A 451 (703)
..+|+-... ........ .+- .+..... .|.-+.+..+++.|....
T Consensus 785 i~ei~l~s~-Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lk 840 (2695)
T 4akg_A 785 IAEMILQIM-GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLI 840 (2695)
T ss_dssp HHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhh
Confidence 888754322 11111110 111 1111222 267788888888776544
No 104
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.54 E-value=5.7e-08 Score=105.86 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=78.2
Q ss_pred ccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccc-
Q 005304 259 IGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGR- 337 (703)
Q Consensus 259 lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~- 337 (703)
++.+.++.++|+||||+|||++++++++..+..++.+...+-...+ .+. .-...+++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~------~lg------~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNF------ELG------VAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHH------HHG------GGTTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHH------HHH------HhcchhHHHHHHHHHHHHH
Confidence 3667777899999999999999999999887766654332210000 011 112346789999999864
Q ss_pred cCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecC
Q 005304 338 QRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDV 400 (703)
Q Consensus 338 ~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~ 400 (703)
.+... .+. .. .....+...+++ .+.|+.+||+++.+ +++++|||++..+....
T Consensus 232 ~r~l~--~~~-~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLP--SGQ-GI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCC--CCS-HH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhhcc--ccC-cc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 22211 111 11 123344455554 35678889999999 79999999998776644
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.52 E-value=2.3e-07 Score=118.14 Aligned_cols=117 Identities=19% Similarity=0.225 Sum_probs=82.4
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHH----HHHhh------------hhhhHHHHHHHHHH
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----EMFVG------------VGASRVRDLFKKAK 320 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~----~~~~G------------~~~~~ir~lF~~A~ 320 (703)
|.+.+++++|+||||||||+||.+++.++ |..+.+++..+.. ....| .++..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 36777899999999999999999997765 5677777765432 11122 23345666777788
Q ss_pred hcCCeEEEEcCcccccccC---CCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 005304 321 ENAPCIVFVDEIDAVGRQR---GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (703)
Q Consensus 321 ~~aP~ILfIDEID~L~~~r---~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaT 376 (703)
..+|++|||||++.+.+.+ +...+.......+.+.++|.+|.++....+++||.+-
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 8999999999999987643 2111111112456788889999888777788777654
No 106
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.25 E-value=3.6e-06 Score=111.22 Aligned_cols=136 Identities=21% Similarity=0.278 Sum_probs=89.8
Q ss_pred ceEEEEcCCCChHHHHHHHH-HHhcCCCEEEeechhHHHHHhhhhhhHHHHHHHHH----H------------hcCCeEE
Q 005304 265 KGVLLVGPPGTGKTLLAKAI-AGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKA----K------------ENAPCIV 327 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAl-A~e~~~pfi~is~se~~~~~~G~~~~~ir~lF~~A----~------------~~aP~IL 327 (703)
++|||+||||||||.+++.. ++..+.+++.++++.-.+ +..+...++.- + .+..+|+
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 47999999999999877654 444467788888875432 23333344321 0 0223699
Q ss_pred EEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc-------CCCCeEEEEecCCc-----ccccccccCCCcccee
Q 005304 328 FVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-------GNTGIIVIAATNRA-----DILDSALLRPGRFDRQ 395 (703)
Q Consensus 328 fIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~-------~~~~ViVIaaTN~p-----~~LD~aLlRpgRfdr~ 395 (703)
||||++.-.... -+.......+.+++..-.-+. .-.++.+|||.|.| ..++++++| ||. .
T Consensus 1379 FiDDiNmp~~D~-----yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~-v 1450 (3245)
T 3vkg_A 1379 FCDEINLPSTDK-----YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP-I 1450 (3245)
T ss_dssp EETTTTCCCCCT-----TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-E
T ss_pred EecccCCCCccc-----cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-E
Confidence 999998642211 123345556666665321111 12368899999987 368999999 885 6
Q ss_pred eeecCCChhhHHHHHHHHh
Q 005304 396 VTVDVPDIRGRTEILKVHG 414 (703)
Q Consensus 396 I~i~~Pd~~eR~~IL~~~l 414 (703)
+.++.|+.+....|+..++
T Consensus 1451 i~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1451 LLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp EECCCCCHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 8999999999999976543
No 107
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.24 E-value=8.5e-06 Score=86.75 Aligned_cols=176 Identities=16% Similarity=0.168 Sum_probs=113.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CC-CEEEeechhHHHHHhhhhhhHHHHHHHHHHh----cCCeEEEEcCccc
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GV-PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDA 334 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~---~~-pfi~is~se~~~~~~G~~~~~ir~lF~~A~~----~aP~ILfIDEID~ 334 (703)
.+..+|||||+|+||+..+++++..+ +. ++..+... + ...++++++.+.. ....|++|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 45579999999999999999998765 32 32222111 1 1335566655532 3356999999998
Q ss_pred -ccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCc------ccccccccCCCccceeeeecCCChhhHH
Q 005304 335 -VGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA------DILDSALLRPGRFDRQVTVDVPDIRGRT 407 (703)
Q Consensus 335 -L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p------~~LD~aLlRpgRfdr~I~i~~Pd~~eR~ 407 (703)
+.. ...+.|+..++... .++++|.+++.+ ..+-+++.+ |. ..+.+..|+.++..
T Consensus 88 kl~~--------------~~~~aLl~~le~p~--~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~ 148 (343)
T 1jr3_D 88 GPNA--------------AINEQLLTLTGLLH--DDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLP 148 (343)
T ss_dssp CCCT--------------THHHHHHHHHTTCB--TTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHH
T ss_pred CCCh--------------HHHHHHHHHHhcCC--CCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHH
Confidence 621 14455666666432 344444444432 356677777 54 47899999999999
Q ss_pred HHHHHHhcCCCCCcc-ccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 005304 408 EILKVHGSNKKFDAD-VSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (703)
Q Consensus 408 ~IL~~~l~~~~l~~d-vdl~~lA~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al~~ 470 (703)
..++..+...++.-+ ..+..++..+.| +.+++.+.++..+..+ +...||.+++.+.+..
T Consensus 149 ~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 149 RWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhh
Confidence 999888776554422 235667766654 6666666666665543 3458999999888764
No 108
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.22 E-value=2.3e-06 Score=95.28 Aligned_cols=127 Identities=18% Similarity=0.271 Sum_probs=98.3
Q ss_pred CeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEe---------cC---CcccccccccCCCc
Q 005304 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA---------TN---RADILDSALLRPGR 391 (703)
Q Consensus 324 P~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaa---------TN---~p~~LD~aLlRpgR 391 (703)
|.|+||||+|.+. ....+.|+..|+.... +++++++ ++ .++.|++.+++ |
T Consensus 296 ~~VliIDEa~~l~--------------~~a~~aLlk~lEe~~~--~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R 357 (456)
T 2c9o_A 296 PGVLFVDEVHMLD--------------IECFTYLHRALESSIA--PIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--R 357 (456)
T ss_dssp ECEEEEESGGGCB--------------HHHHHHHHHHTTSTTC--CEEEEEECCSEEECBTTSSCEEETTCCHHHHT--T
T ss_pred ceEEEEechhhcC--------------HHHHHHHHHHhhccCC--CEEEEecCCccccccccccccccccCChhHHh--h
Confidence 4699999999992 3567888888885543 3555455 33 27788999999 9
Q ss_pred cceeeeecCCChhhHHHHHHHHhcC--CCCCccccHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005304 392 FDRQVTVDVPDIRGRTEILKVHGSN--KKFDADVSLDVIAMRT-PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (703)
Q Consensus 392 fdr~I~i~~Pd~~eR~~IL~~~l~~--~~l~~dvdl~~lA~~t-~G~sgadL~~lv~eAa~~A~r~~~~~It~~di~~Al 468 (703)
|.. +.+++|+.++..++++..+.. ..++++ .+..++..+ .| +++...++++.|...|..+++..|+.+|+.+++
T Consensus 358 ~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~-~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~ 434 (456)
T 2c9o_A 358 VMI-IRTMLYTPQEMKQIIKIRAQTEGINISEE-ALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEIS 434 (456)
T ss_dssp EEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred cce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHH
Confidence 976 699999999999999987643 223322 356677766 54 789999999999999999999999999999998
Q ss_pred HHH
Q 005304 469 DRI 471 (703)
Q Consensus 469 ~~v 471 (703)
.-+
T Consensus 435 ~~~ 437 (456)
T 2c9o_A 435 ELF 437 (456)
T ss_dssp HHS
T ss_pred HHh
Confidence 754
No 109
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.04 E-value=1.4e-06 Score=86.98 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=25.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi 293 (703)
+++|||||||||||++|.++|+.++-.++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 57999999999999999999999865443
No 110
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.98 E-value=2.8e-05 Score=102.95 Aligned_cols=126 Identities=19% Similarity=0.244 Sum_probs=90.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCC
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 344 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~ 344 (703)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-.+. ..+..+|.-+... .+..++|||+.+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl--------- 668 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRL--------- 668 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSS---------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcC---------
Confidence 477899999999999999999999999999999874432 3345566655433 468899999998
Q ss_pred CCChHHHHHHHHHHhhh-------------c-C--ccCCCCeEEEEecCC----cccccccccCCCccceeeeecCCChh
Q 005304 345 GGNDEREQTLNQLLTEM-------------D-G--FEGNTGIIVIAATNR----ADILDSALLRPGRFDRQVTVDVPDIR 404 (703)
Q Consensus 345 ~~~~e~~~~l~~LL~~l-------------d-~--~~~~~~ViVIaaTN~----p~~LD~aLlRpgRfdr~I~i~~Pd~~ 404 (703)
..+...++.+.+..+ + | +.-+.++.|++|.|. ...|+++|.. || |.|.+..||.+
T Consensus 669 --~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~ 743 (3245)
T 3vkg_A 669 --EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDRE 743 (3245)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHH
Confidence 233333333333211 1 1 223446788888884 3578999998 88 77999999998
Q ss_pred hHHHHHH
Q 005304 405 GRTEILK 411 (703)
Q Consensus 405 eR~~IL~ 411 (703)
...+|+-
T Consensus 744 ~i~ei~L 750 (3245)
T 3vkg_A 744 MIAQVML 750 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877754
No 111
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.98 E-value=2.7e-05 Score=75.78 Aligned_cols=28 Identities=36% Similarity=0.608 Sum_probs=24.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi 293 (703)
.+.|.||+|+|||||++.+++..++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999998765543
No 112
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.96 E-value=1.7e-05 Score=77.98 Aligned_cols=39 Identities=21% Similarity=0.088 Sum_probs=32.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechh
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se 299 (703)
.....-++|+||||+|||+|++.+|...+.++++++...
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 444456899999999999999999986678888888654
No 113
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.91 E-value=0.00024 Score=80.86 Aligned_cols=174 Identities=16% Similarity=0.146 Sum_probs=98.1
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEeechhH
Q 005304 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSEF 300 (703)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-------~~pfi~is~se~ 300 (703)
.....++|.+...++|.+.+.... ..++-|+|+||+|+|||+||+.+++.. ...++.++.+..
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLK----------GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTST----------TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCCeecccHHHHHHHHHHHhccc----------CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 355679999999888877664211 123469999999999999999997532 122444443321
Q ss_pred -----HHHH------hh----------hhhhHHHHHHHHHHh--cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHH
Q 005304 301 -----VEMF------VG----------VGASRVRDLFKKAKE--NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (703)
Q Consensus 301 -----~~~~------~G----------~~~~~ir~lF~~A~~--~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~L 357 (703)
...+ .+ .....+...+..... ..|++|+||+++.. . .
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------------~----~ 250 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------------W----V 250 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------------H----H
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------------H----H
Confidence 1111 11 011122222322222 26899999999753 0 1
Q ss_pred HhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeee---cCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCC
Q 005304 358 LTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTV---DVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPG 434 (703)
Q Consensus 358 L~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i---~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G 434 (703)
+.. + ..+..||.||..+..... .. + ..+.+ ...+.++-.+++..++.............|++.+.|
T Consensus 251 l~~---l--~~~~~ilvTsR~~~~~~~--~~-~---~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G 319 (591)
T 1z6t_A 251 LKA---F--DSQCQILLTTRDKSVTDS--VM-G---PKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKG 319 (591)
T ss_dssp HHT---T--CSSCEEEEEESCGGGGTT--CC-S---CEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTT
T ss_pred HHH---h--cCCCeEEEECCCcHHHHh--cC-C---CceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCC
Confidence 121 2 234566667765443211 11 1 22333 367888888999888754222223346788999988
Q ss_pred CcHHHHHHH
Q 005304 435 FSGADLANL 443 (703)
Q Consensus 435 ~sgadL~~l 443 (703)
. |--|..+
T Consensus 320 ~-PLal~~~ 327 (591)
T 1z6t_A 320 S-PLVVSLI 327 (591)
T ss_dssp C-HHHHHHH
T ss_pred C-cHHHHHH
Confidence 6 5444433
No 114
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.87 E-value=2.8e-05 Score=76.84 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=29.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeech
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s 298 (703)
.....-++|+||||+|||+|++.++... +.++++++..
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 3444568999999999999999998654 5677777643
No 115
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.83 E-value=2.8e-05 Score=80.64 Aligned_cols=26 Identities=42% Similarity=0.561 Sum_probs=23.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGV 290 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~ 290 (703)
++++||||||||||++|+++|+....
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 47999999999999999999997644
No 116
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.83 E-value=3.9e-05 Score=76.64 Aligned_cols=118 Identities=17% Similarity=0.174 Sum_probs=62.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHh--c-------CCCEEEeechh------HHHH--Hhhh---------------h
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGE--A-------GVPFFSISGSE------FVEM--FVGV---------------G 308 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e--~-------~~pfi~is~se------~~~~--~~G~---------------~ 308 (703)
++...-++|+||||+|||+|++.++.. . +...++++..+ +... ..+. .
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 344456999999999999999999985 2 45678887654 1110 0111 0
Q ss_pred hh----HHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005304 309 AS----RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (703)
Q Consensus 309 ~~----~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (703)
.. .+..+.+.+....|.+|+|||+..+....-.+. +...+.++.+..++..+..+....++.||.+++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~ 174 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGR-GELSARQMHLARFLRMLLRLADEFGVAVVITNQVV 174 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC---
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeee
Confidence 11 122233344456799999999998853221100 00012222244444444333333356666666543
No 117
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.77 E-value=5.8e-05 Score=81.80 Aligned_cols=117 Identities=23% Similarity=0.283 Sum_probs=67.5
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHH----Hhhh-----------hhhHHHHHHHHH-H
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM----FVGV-----------GASRVRDLFKKA-K 320 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~----~~G~-----------~~~~ir~lF~~A-~ 320 (703)
|.....-++|+||||+|||+||..+|..+ +.++++++...-.+. ..|. ....+.+.++.. +
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 34445579999999999999999997754 678888886542211 1111 112222333322 3
Q ss_pred hcCCeEEEEcCcccccccCCC-CCCCC-C-hHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 005304 321 ENAPCIVFVDEIDAVGRQRGT-GIGGG-N-DEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (703)
Q Consensus 321 ~~aP~ILfIDEID~L~~~r~~-~~~~~-~-~e~~~~l~~LL~~ld~~~~~~~ViVIaaT 376 (703)
...+++|+||.+..+...... +..+. + ....+.+.+++..|..+....++.||.+.
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 466899999999999642211 00000 0 02224456666666555455566666653
No 118
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.77 E-value=0.00011 Score=73.68 Aligned_cols=128 Identities=21% Similarity=0.233 Sum_probs=70.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHH--Hh--cCCCEEEeechhHHHHH------hhh------------------------
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIA--GE--AGVPFFSISGSEFVEMF------VGV------------------------ 307 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA--~e--~~~pfi~is~se~~~~~------~G~------------------------ 307 (703)
+...-+.|.||+|+|||||++.++ .. .+...++++........ .+.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLP 107 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC---------
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccccc
Confidence 334469999999999999999998 32 35556666543211100 000
Q ss_pred ------------hhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEe
Q 005304 308 ------------GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (703)
Q Consensus 308 ------------~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaa 375 (703)
.......+........|.+|+|||..+...... ........+..++..+. ..++.||.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~----~~g~tii~v 178 (251)
T 2ehv_A 108 SEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILL----EMGVTTILT 178 (251)
T ss_dssp ----------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHH----HHCCEEEEE
T ss_pred cccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHH----HCCCeEEEE
Confidence 011122233334457899999999987753211 12334445666666653 235567777
Q ss_pred cCCccccc-----ccccCCCcc-ceeeeecC
Q 005304 376 TNRADILD-----SALLRPGRF-DRQVTVDV 400 (703)
Q Consensus 376 TN~p~~LD-----~aLlRpgRf-dr~I~i~~ 400 (703)
|+..+... +.+.. .+ |+.+.+..
T Consensus 179 tH~~~~~~~~~~~~~i~~--~~aD~vi~l~~ 207 (251)
T 2ehv_A 179 TEAPDPQHGKLSRYGIEE--FIARGVIVLDL 207 (251)
T ss_dssp ECCC----CCSSSSSCGG--GGCSEEEEEEE
T ss_pred ECCCCCCcccccccChhh--EeeeEEEEEee
Confidence 77655442 22222 45 77776653
No 119
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.76 E-value=2.2e-05 Score=84.50 Aligned_cols=77 Identities=19% Similarity=0.238 Sum_probs=49.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHH----HHhhhh-----------hhHHHHHHH-HHHh
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----MFVGVG-----------ASRVRDLFK-KAKE 321 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~----~~~G~~-----------~~~ir~lF~-~A~~ 321 (703)
.....-++|+||||+|||+|+..++..+ +.++++++...-.+ ...|.. ...+..+.+ .++.
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRS 137 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhc
Confidence 3444569999999999999999997654 67788887653211 111211 111222222 2235
Q ss_pred cCCeEEEEcCcccccc
Q 005304 322 NAPCIVFVDEIDAVGR 337 (703)
Q Consensus 322 ~aP~ILfIDEID~L~~ 337 (703)
..|.+|+||++..+..
T Consensus 138 ~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 138 GALDIIVIDSVAALVP 153 (349)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred CCCCEEEEcChHhhcc
Confidence 6799999999999863
No 120
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.76 E-value=3.9e-05 Score=81.50 Aligned_cols=116 Identities=22% Similarity=0.233 Sum_probs=68.6
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEeechhH--HH----HH--hhhh--------------
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF--VE----MF--VGVG-------------- 308 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~se~--~~----~~--~G~~-------------- 308 (703)
|.+...-++|+||||+|||+++..+|..+ +.++++++...- .+ .. .|..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 34444569999999999999999998865 567888887642 11 00 1110
Q ss_pred -hh----HHHHHHHHHHh-cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 005304 309 -AS----RVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (703)
Q Consensus 309 -~~----~ir~lF~~A~~-~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaT 376 (703)
.. .+..+....+. ..+.+|+||.+..+......+. +...+.++.+.+++..+..+....++.||.+.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT-TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 11 12233334444 6789999999999864321110 11123334566666666655444456666553
No 121
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.74 E-value=6.6e-05 Score=81.04 Aligned_cols=115 Identities=20% Similarity=0.209 Sum_probs=67.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHH----HHhhhh--------hhHHHHHHHH----HHh
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----MFVGVG--------ASRVRDLFKK----AKE 321 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~----~~~G~~--------~~~ir~lF~~----A~~ 321 (703)
.....-++|+||||+|||+|+..++..+ +.++++++..+... .-.|.. ...+.+++.. .+.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRS 137 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhh
Confidence 3444568999999999999999998764 67788888754221 001110 1112222222 234
Q ss_pred cCCeEEEEcCcccccc-cCCCCCCCCC--hHHHHHHHHHHhhhcCccCCCCeEEEEe
Q 005304 322 NAPCIVFVDEIDAVGR-QRGTGIGGGN--DEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (703)
Q Consensus 322 ~aP~ILfIDEID~L~~-~r~~~~~~~~--~e~~~~l~~LL~~ld~~~~~~~ViVIaa 375 (703)
..|.+++||.+..+.+ ..-.+..+.. ....+.+.+++..+..+....++.||.+
T Consensus 138 ~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 138 GVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp SCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred cCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 6789999999999875 2111111111 1234556666666666555556666654
No 122
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.70 E-value=8.3e-05 Score=82.69 Aligned_cols=67 Identities=28% Similarity=0.383 Sum_probs=41.2
Q ss_pred ccccccCCCccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CC-CEEE
Q 005304 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GV-PFFS 294 (703)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~-pfi~ 294 (703)
+-+.++..+.+|+++ .+++++.+..++.++.... ..++|.|+||||||+++.+++..+ +. .++.
T Consensus 12 ~~~~~~~~p~~~~~L--n~~Q~~av~~~~~~i~~~~----------~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~ 79 (459)
T 3upu_A 12 SGLVPRGSHMTFDDL--TEGQKNAFNIVMKAIKEKK----------HHVTINGPAGTGATTLTKFIIEALISTGETGIIL 79 (459)
T ss_dssp ---------CCSSCC--CHHHHHHHHHHHHHHHSSS----------CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCccccCCCccccC--CHHHHHHHHHHHHHHhcCC----------CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 346678888999987 4455666666666655432 269999999999999999998765 33 4554
Q ss_pred eec
Q 005304 295 ISG 297 (703)
Q Consensus 295 is~ 297 (703)
+..
T Consensus 80 ~a~ 82 (459)
T 3upu_A 80 AAP 82 (459)
T ss_dssp EES
T ss_pred ecC
Confidence 443
No 123
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.70 E-value=0.00055 Score=83.92 Aligned_cols=170 Identities=15% Similarity=0.135 Sum_probs=100.3
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEeechh-
Q 005304 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSE- 299 (703)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~-------~~pfi~is~se- 299 (703)
....+++|.++..++|.+.+.... ..++-|.|+|+.|+|||+||+.+++.. ...++.++.+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 345679999999888887763211 124468899999999999999997752 12233444332
Q ss_pred ----HHHHH------hh----------hhhhHHHHHHHHHHh--cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHH
Q 005304 300 ----FVEMF------VG----------VGASRVRDLFKKAKE--NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (703)
Q Consensus 300 ----~~~~~------~G----------~~~~~ir~lF~~A~~--~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~L 357 (703)
....+ .+ .....+.+.+..... ..+++|+||+++...
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------- 249 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------- 249 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH---------------------
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH---------------------
Confidence 11100 00 011223333333323 337899999997641
Q ss_pred HhhhcCccCCCCeEEEEecCCcccccccccCCCccceeeeecC-CChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCc
Q 005304 358 LTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDV-PDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFS 436 (703)
Q Consensus 358 L~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~-Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~s 436 (703)
.++.+ ..+..||.||..+...... . .....+.++. .+.++-.++|..+..............|++.+.|..
T Consensus 250 --~~~~~--~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 250 --VLKAF--DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp --HHTTT--CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred --HHHhh--cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 11222 2345677777765443211 1 1234667775 788888899988775443333334778999998863
No 124
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.67 E-value=6.6e-05 Score=95.94 Aligned_cols=119 Identities=18% Similarity=0.271 Sum_probs=79.1
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHH----hhh--------hhhHHHHHHHHHHh---
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF----VGV--------GASRVRDLFKKAKE--- 321 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~----~G~--------~~~~ir~lF~~A~~--- 321 (703)
|..+...++|+|+||+|||+||..+|..+ +.+++++++.+..+.. .|. ....+.++++.++.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 46667789999999999999999998866 5679999987544432 221 11224455555543
Q ss_pred -cCCeEEEEcCcccccc-cCCCCC-CCCC-hHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 322 -NAPCIVFVDEIDAVGR-QRGTGI-GGGN-DEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 322 -~aP~ILfIDEID~L~~-~r~~~~-~~~~-~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
..|++||||.++.+.. ....+. +... .-..+.+++++..|..+....++.||++..-
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv 868 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 6799999999999965 221111 1111 1223457888888887777777888777643
No 125
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.63 E-value=0.00014 Score=69.31 Aligned_cols=40 Identities=15% Similarity=0.367 Sum_probs=34.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~ 303 (703)
|+-|+|+|+||+||||++++++..++.+++.++...+.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~ 42 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA 42 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh
Confidence 4569999999999999999999999999998887766543
No 126
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.61 E-value=0.00012 Score=79.07 Aligned_cols=117 Identities=19% Similarity=0.279 Sum_probs=65.5
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHH----HHhhh-----------hhhHHHHHHHHH-H
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----MFVGV-----------GASRVRDLFKKA-K 320 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~----~~~G~-----------~~~~ir~lF~~A-~ 320 (703)
|.+...-++|+||||+|||+||..+|.++ +.++++++...-.+ .-.|. ....+.++++.. +
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 34445579999999999999999998754 67888888743211 11111 112233334332 3
Q ss_pred hcCCeEEEEcCcccccccCC-CCCCCCC-h-HHHHHHHHHHhhhcCccCCCCeEEEEec
Q 005304 321 ENAPCIVFVDEIDAVGRQRG-TGIGGGN-D-EREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (703)
Q Consensus 321 ~~aP~ILfIDEID~L~~~r~-~~~~~~~-~-e~~~~l~~LL~~ld~~~~~~~ViVIaaT 376 (703)
...+.+|+||.+..+..... .+..+.. . ...+.+.+++..+..+....++.||.+.
T Consensus 139 ~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~n 197 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 197 (356)
T ss_dssp HTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred ccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 46789999999999864211 0000000 0 1122345555555444334456666543
No 127
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.61 E-value=8.6e-05 Score=73.41 Aligned_cols=38 Identities=24% Similarity=0.170 Sum_probs=28.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC---------CCEEEeech
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSISGS 298 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~---------~pfi~is~s 298 (703)
++...-+.|.||+|+|||+|++.++...- ...++++..
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 34444699999999999999999998542 236666654
No 128
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.61 E-value=0.00011 Score=78.72 Aligned_cols=116 Identities=22% Similarity=0.208 Sum_probs=67.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEeechhH--HH----HH--hhhh---------------
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF--VE----MF--VGVG--------------- 308 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~se~--~~----~~--~G~~--------------- 308 (703)
.+...-++|+||||+|||+|+..+|..+ +.++++++...- .+ .. .|..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCC
Confidence 3444458999999999999999998863 557888876542 11 10 1110
Q ss_pred hhHH----HHHHHHHHh--cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 005304 309 ASRV----RDLFKKAKE--NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (703)
Q Consensus 309 ~~~i----r~lF~~A~~--~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN 377 (703)
...+ ..+....+. ..+.+|+||.+..+......+. +....+.+.+.+++..+..+....++.||.+..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGR-GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGG-GCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 1111 122233444 6789999999999864321100 111223344666666665554455666666544
No 129
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.52 E-value=0.00012 Score=80.12 Aligned_cols=118 Identities=18% Similarity=0.213 Sum_probs=66.1
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEeechhHH------H--HHhhhh--------------
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEFV------E--MFVGVG-------------- 308 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~se~~------~--~~~G~~-------------- 308 (703)
|+....-++|+||||+|||+|++.++... +...++++..+-. . ...|..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 44444569999999999999999776433 3447888765410 0 001110
Q ss_pred -----hhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 309 -----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 309 -----~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
...+..+.+.+....|.+|+||++-.+......+ .++..++++.+.+++..+..+....++.||.++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg-~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG-RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 0111222333345679999999998886432221 11223445555666666655544446667766654
No 130
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.49 E-value=0.00044 Score=68.94 Aligned_cols=39 Identities=33% Similarity=0.451 Sum_probs=29.8
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEeech
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGS 298 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s 298 (703)
|.....-++|+||||+|||+++..+|.. .+.++++++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3444456899999999999999888654 36788887764
No 131
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.45 E-value=0.0023 Score=64.62 Aligned_cols=162 Identities=24% Similarity=0.303 Sum_probs=84.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEeech--------hHHHHHhh----------h--hhhHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS--------EFVEMFVG----------V--GASRVRDLFKKAKEN 322 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s--------e~~~~~~G----------~--~~~~ir~lF~~A~~~ 322 (703)
.+++.|+||+|||+++-.+|..+ |..++.++.. .+...... . .+..+..++ ..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L----~~ 83 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALL----KA 83 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHH----HH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHH----hc
Confidence 69999999999999999998764 7776655542 12111100 0 112233322 24
Q ss_pred CCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC--cc----------------cccc
Q 005304 323 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR--AD----------------ILDS 384 (703)
Q Consensus 323 aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~--p~----------------~LD~ 384 (703)
.|.+++|||+-..-.. +..+...-+.+..++ ..++=|++|+|. .+ .++.
T Consensus 84 ~pdlvIVDElG~~~~~-----~~r~~~~~qDV~~~l--------~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd 150 (228)
T 2r8r_A 84 APSLVLVDELAHTNAP-----GSRHTKRWQDIQELL--------AAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPD 150 (228)
T ss_dssp CCSEEEESCTTCBCCT-----TCSSSBHHHHHHHHH--------HTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCH
T ss_pred CCCEEEEeCCCCCCcc-----cchhHHHHHHHHHHH--------cCCCCEEEEccccccccHHHHHHHHcCCCcCCcCcc
Confidence 6899999998654111 111222223333332 234557777772 22 2333
Q ss_pred cccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005304 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGR 453 (703)
Q Consensus 385 aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eAa~~A~r 453 (703)
.+++ +.|.+.-++.|..+ +++.....+-..++..-..+.. -|+...|..|-+-|...++.
T Consensus 151 ~~~~--~a~~v~lvD~~p~~----l~~rl~~g~vy~~~~~~~a~~~---~f~~~nl~~lrelal~~~a~ 210 (228)
T 2r8r_A 151 WVLQ--EAFDLVLIDLPPRE----LLERLRDGKVYVPEQARAAIDA---FFTQTNLTALREMAMQTAAA 210 (228)
T ss_dssp HHHH--TCSEEEEBCCCHHH----HHHHHHTTCCCCTTCCHHHHHH---HCCHHHHHHHHHHHHHHHHT
T ss_pred HHHh--hCCeEEEecCCHHH----HHHHHHCCCccChhHHHHHHHh---hhchhhHHHHHHHHHHHHHH
Confidence 3444 45556666776654 3333333333232222222222 26777777765556665543
No 132
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.43 E-value=0.0024 Score=72.49 Aligned_cols=165 Identities=11% Similarity=0.102 Sum_probs=93.8
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHH----hcCCCE---EEeechh-----HH
Q 005304 234 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG----EAGVPF---FSISGSE-----FV 301 (703)
Q Consensus 234 ~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~----e~~~pf---i~is~se-----~~ 301 (703)
+|.++.++++.+.+..-. ...++-|.|+|+.|+|||+||+.+++ .....| +.++.++ ..
T Consensus 131 ~GR~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhccc---------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 499999888887774321 11245789999999999999999996 332221 2233222 11
Q ss_pred ---HHH---hhhh-------------hhHHHHHHHHHHhcC-CeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhh
Q 005304 302 ---EMF---VGVG-------------ASRVRDLFKKAKENA-PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 361 (703)
Q Consensus 302 ---~~~---~G~~-------------~~~ir~lF~~A~~~a-P~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~l 361 (703)
... .+.. ...+...+...-... +++|+||+++... +. .+..
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~---------------~~--~~~~-- 262 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE---------------TI--RWAQ-- 262 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH---------------HH--HHHH--
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch---------------hh--cccc--
Confidence 111 1111 111233344433443 8999999997741 11 1111
Q ss_pred cCccCCCCeEEEEecCCcccccccccCCCccceeeeecCCChhhHHHHHHHHhcCCCCCcc--ccHHHHHHhCCCC
Q 005304 362 DGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD--VSLDVIAMRTPGF 435 (703)
Q Consensus 362 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d--vdl~~lA~~t~G~ 435 (703)
..+..||.||........ .. -.+..+.++..+.++-.++|..++.......+ .....|++.+.|.
T Consensus 263 -----~~gs~ilvTTR~~~v~~~--~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl 329 (549)
T 2a5y_B 263 -----ELRLRCLVTTRDVEISNA--AS--QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN 329 (549)
T ss_dssp -----HTTCEEEEEESBGGGGGG--CC--SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC
T ss_pred -----cCCCEEEEEcCCHHHHHH--cC--CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC
Confidence 134567777765433221 11 13356889999999999999988644332111 1245677777775
No 133
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.43 E-value=6.3e-05 Score=73.49 Aligned_cols=68 Identities=18% Similarity=0.143 Sum_probs=38.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHh---cCCCEEEeechhHHHHH--------hhh-----hhhHHHHHHHHHHhcCCeEEEE
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMF--------VGV-----GASRVRDLFKKAKENAPCIVFV 329 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~se~~~~~--------~G~-----~~~~ir~lF~~A~~~aP~ILfI 329 (703)
-++++||+|+|||+++..++.. .+.+++.+.... -..+ .|. ......++++.+. ..+.+|+|
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~-d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviI 82 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI-DSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFI 82 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc-ccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEE
Confidence 5789999999999999666654 366655543221 0000 010 0011223333322 24579999
Q ss_pred cCcccc
Q 005304 330 DEIDAV 335 (703)
Q Consensus 330 DEID~L 335 (703)
||++.+
T Consensus 83 DE~Q~~ 88 (184)
T 2orw_A 83 DEVQFF 88 (184)
T ss_dssp CCGGGS
T ss_pred ECcccC
Confidence 999987
No 134
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.40 E-value=0.00017 Score=76.06 Aligned_cols=116 Identities=21% Similarity=0.247 Sum_probs=67.1
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---------------C----CCEEEeechhH--HH----HH--hhhh----
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------------G----VPFFSISGSEF--VE----MF--VGVG---- 308 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---------------~----~pfi~is~se~--~~----~~--~G~~---- 308 (703)
|.+...-++|+||||+|||++|..+|..+ | .++++++...- .+ .. .|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 34444568999999999999999998753 2 57788876542 11 10 1110
Q ss_pred -----------hh----HHHHHHHHHHh-cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEE
Q 005304 309 -----------AS----RVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (703)
Q Consensus 309 -----------~~----~ir~lF~~A~~-~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViV 372 (703)
.. .+..+.+..+. ..+.+|+||.+..+......+. +...+.++.+.+++..+..+....++.|
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-~~~~~r~~~~~~~~~~L~~la~~~~~~v 252 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGR-GKLAERQQKLGRHMATLNKLADLFNCVV 252 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCT-TSHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 01 11123333344 5688999999999864321110 1112334456667666665555556666
Q ss_pred EEec
Q 005304 373 IAAT 376 (703)
Q Consensus 373 IaaT 376 (703)
|.+.
T Consensus 253 i~~n 256 (322)
T 2i1q_A 253 LVTN 256 (322)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 6653
No 135
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.40 E-value=0.00029 Score=75.73 Aligned_cols=119 Identities=23% Similarity=0.242 Sum_probs=64.9
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhcC---------CCEEEeechhHH--H----HH--hh-------------h--
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSISGSEFV--E----MF--VG-------------V-- 307 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~~---------~pfi~is~se~~--~----~~--~G-------------~-- 307 (703)
|++...-+.|+||||+|||+|++.++.... -.+++++..+.. . .. .+ .
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~ 206 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 206 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecC
Confidence 444445699999999999999999998762 355777764320 1 00 00 0
Q ss_pred hhhHHHHHHHH----HHh-----cCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 308 GASRVRDLFKK----AKE-----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 308 ~~~~ir~lF~~----A~~-----~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
......++++. +.. ..|.+|+|||+-++......+. +....+.+.+.+++..+..+....++.||.+++.
T Consensus 207 ~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~-~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~ 285 (349)
T 1pzn_A 207 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR-GALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 285 (349)
T ss_dssp SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCST-TTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhccc-ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccc
Confidence 01111222222 233 5799999999988764321110 0111222345555555544433445566666554
Q ss_pred c
Q 005304 379 A 379 (703)
Q Consensus 379 p 379 (703)
.
T Consensus 286 ~ 286 (349)
T 1pzn_A 286 Q 286 (349)
T ss_dssp C
T ss_pred c
Confidence 3
No 136
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.40 E-value=0.00012 Score=92.60 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=55.0
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHH----Hhhh--------hhhHHHHHHHHHH----
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM----FVGV--------GASRVRDLFKKAK---- 320 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~----~~G~--------~~~~ir~lF~~A~---- 320 (703)
|..+...++|+||||+|||+||..+|.++ +.++++++..+-.+. ..|. ....+.++++.++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 46666789999999999999999998765 568889887654321 1221 1112344444443
Q ss_pred hcCCeEEEEcCcccccc
Q 005304 321 ENAPCIVFVDEIDAVGR 337 (703)
Q Consensus 321 ~~aP~ILfIDEID~L~~ 337 (703)
...|++|+||.++.+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 57899999999999963
No 137
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.38 E-value=0.0014 Score=72.54 Aligned_cols=93 Identities=26% Similarity=0.356 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCcc--------CCCCeEEEEec-----CC
Q 005304 312 VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVIAAT-----NR 378 (703)
Q Consensus 312 ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~--------~~~~ViVIaaT-----N~ 378 (703)
.++.++.|..+ +|+|+||||.++.+.+. .+++...+.+...||..||+.. ...+|++|+|. |.
T Consensus 241 ~~~ai~~ae~~--~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~ 316 (444)
T 1g41_A 241 KQKAIDAVEQN--GIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARP 316 (444)
T ss_dssp HHHHHHHHHHH--CEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCG
T ss_pred HHHHHHHhccC--CeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCCh
Confidence 44555555333 49999999999765431 2233334457778888888742 34579999987 44
Q ss_pred cccccccccCCCccceeeeecCCChhhHHHHHH
Q 005304 379 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILK 411 (703)
Q Consensus 379 p~~LD~aLlRpgRfdr~I~i~~Pd~~eR~~IL~ 411 (703)
.+ +-|.|+. ||..+|.++.++.++..+|+.
T Consensus 317 ~d-lipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 317 SD-LIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp GG-SCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred hh-cchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 44 5578887 999999999999999999994
No 138
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.33 E-value=0.00035 Score=74.15 Aligned_cols=110 Identities=15% Similarity=0.232 Sum_probs=62.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc-----CCCEEEeechhHHH----HHhhh-----------hhhHH-HHHHHHH---Hh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEFVE----MFVGV-----------GASRV-RDLFKKA---KE 321 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~se~~~----~~~G~-----------~~~~i-r~lF~~A---~~ 321 (703)
-++|+||||+|||+|+-.++.++ +..+++++..+-.. .-.|. ....+ -++.+.+ +.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 47899999999999987775543 66788888754221 11121 11122 2222222 45
Q ss_pred cCCeEEEEcCcccccccCC-CCCCC----CChHHHHHHHHHHhhhcCccCCCCeEEEEe
Q 005304 322 NAPCIVFVDEIDAVGRQRG-TGIGG----GNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (703)
Q Consensus 322 ~aP~ILfIDEID~L~~~r~-~~~~~----~~~e~~~~l~~LL~~ld~~~~~~~ViVIaa 375 (703)
..|.+|+||-|.++.++.. .+..+ ++....+.+.+.|..|.++....++.||.+
T Consensus 110 ~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp TCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 6799999999999974321 11101 011244556666666655545556666654
No 139
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.31 E-value=0.00059 Score=71.25 Aligned_cols=61 Identities=28% Similarity=0.349 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 237 DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 237 de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
++....+.+++..+... ......|.-++|.||||+||||+++.++.+.+..++.+++..+.
T Consensus 10 ~~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred HHHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 34444455555443222 12334567899999999999999999999886567778876553
No 140
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.30 E-value=0.00045 Score=69.70 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=44.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHH------HHhhhh-----hhHHHHHHHHHHh----cCCeEE
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE------MFVGVG-----ASRVRDLFKKAKE----NAPCIV 327 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~------~~~G~~-----~~~ir~lF~~A~~----~aP~IL 327 (703)
-++++||+|+|||+++..++..+ +..++.++...-.. ...|.. .....++++.+.. ..+.+|
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 47788999999999998887655 66777664332100 001110 1112356666654 347899
Q ss_pred EEcCcccc
Q 005304 328 FVDEIDAV 335 (703)
Q Consensus 328 fIDEID~L 335 (703)
+|||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999887
No 141
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.28 E-value=0.001 Score=66.40 Aligned_cols=39 Identities=33% Similarity=0.330 Sum_probs=29.6
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHh----cCCCEEEeech
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSISGS 298 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e----~~~pfi~is~s 298 (703)
|.....-++|+|+||+|||++|..+|.+ .+.++++++..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 3444456999999999999999887543 37788888754
No 142
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.24 E-value=0.00039 Score=71.75 Aligned_cols=36 Identities=31% Similarity=0.494 Sum_probs=27.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc--C-----------CCEEEeechh
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA--G-----------VPFFSISGSE 299 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~--~-----------~pfi~is~se 299 (703)
..-++|+||||+|||+|++.++..+ | .++.+++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 3469999999999999999998643 2 4677776543
No 143
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.24 E-value=0.0026 Score=70.42 Aligned_cols=73 Identities=19% Similarity=0.186 Sum_probs=49.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHH-------HH---h----------hhhhhHHHHHHHHH
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-------MF---V----------GVGASRVRDLFKKA 319 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~-------~~---~----------G~~~~~ir~lF~~A 319 (703)
.|.-+++.|++|+||||++..+|..+ |..+..+++..+.. .+ . ......+++.++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998754 66777776643311 00 0 11223346677777
Q ss_pred HhcCCeEEEEcCcccc
Q 005304 320 KENAPCIVFVDEIDAV 335 (703)
Q Consensus 320 ~~~aP~ILfIDEID~L 335 (703)
+...+.+++||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7767789999987443
No 144
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.20 E-value=0.00019 Score=68.91 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=32.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhh
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 306 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G 306 (703)
++.|+|+||||+|||++++.+|..++.+|+.. .++.....|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~--d~~~~~~~g 45 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS--DKEIEKRTG 45 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH--HHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHHcC
Confidence 45799999999999999999999999988754 444444333
No 145
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.15 E-value=0.0011 Score=67.57 Aligned_cols=41 Identities=29% Similarity=0.435 Sum_probs=34.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
...|.-++|.|+||+||||+++.++..++.+++.+++..+.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r 69 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR 69 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH
Confidence 34567899999999999999999999998777888877663
No 146
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.12 E-value=0.00098 Score=73.98 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=30.8
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEeech
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s 298 (703)
|.....-++|.|+||+|||+|+..+|..+ |.++++++..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 45555569999999999999999997643 6688888753
No 147
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.08 E-value=0.00039 Score=66.85 Aligned_cols=33 Identities=36% Similarity=0.649 Sum_probs=29.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (703)
..|.-|+|.|+||+||||+++.++..++.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 446679999999999999999999999988765
No 148
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.07 E-value=0.00029 Score=68.86 Aligned_cols=38 Identities=37% Similarity=0.503 Sum_probs=31.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~ 303 (703)
.+.++|.||||+||||+++++|..++.+++. ..++...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~--~d~~~~~ 62 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFID--LDWYIEE 62 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEE--HHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEc--chHHHHH
Confidence 4579999999999999999999999998864 3444443
No 149
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.01 E-value=0.0005 Score=66.11 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=33.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
..+.-+.|.||||+||||+++.+++..+.+.+.++..++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW 46 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchh
Confidence 3445689999999999999999999988888888876653
No 150
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.98 E-value=0.0016 Score=72.05 Aligned_cols=39 Identities=28% Similarity=0.175 Sum_probs=30.8
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEeech
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s 298 (703)
|..+..-++|.|+||+|||+++..+|... +.++++++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 44555568999999999999999987643 6788888763
No 151
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.97 E-value=0.0011 Score=68.82 Aligned_cols=38 Identities=21% Similarity=0.157 Sum_probs=29.0
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEeec
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISG 297 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~ 297 (703)
|+....-++|.||||+|||+|++.+|... |.++++++.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34444468999999999999999998754 556766654
No 152
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.91 E-value=0.00054 Score=64.40 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=27.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEee
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (703)
-|+|.||||+||||+++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4899999999999999999999998887654
No 153
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.91 E-value=0.0035 Score=66.11 Aligned_cols=39 Identities=26% Similarity=0.134 Sum_probs=30.5
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeech
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s 298 (703)
|..+..-++|.|+||+|||+|+..+|..+ +.++++++..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 44444569999999999999999998654 5688888753
No 154
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.91 E-value=0.0046 Score=62.39 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=29.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeech-hHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS-EFV 301 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s-e~~ 301 (703)
.++++||+|+|||.++.+++...+.+++.+... ++.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~ 146 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHH
Confidence 489999999999999999998888777777654 443
No 155
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.90 E-value=0.0015 Score=66.80 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=33.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh---cCCCEEEeechhHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVE 302 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~se~~~ 302 (703)
+.-|+|+|+||+||||+|+.++.. .|.+++.++...+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~ 45 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE 45 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence 346999999999999999999997 788988777766654
No 156
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.90 E-value=0.0016 Score=61.57 Aligned_cols=36 Identities=28% Similarity=0.691 Sum_probs=29.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
..+.|+||||+||||+++.+|+.++.+++ +...+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i--d~d~~~~ 40 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY--DSDQEIE 40 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE--EHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE--eccHHHH
Confidence 46999999999999999999999987654 4544443
No 157
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.88 E-value=0.00051 Score=65.84 Aligned_cols=36 Identities=31% Similarity=0.559 Sum_probs=29.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~ 303 (703)
-|+|+|+||+|||++|+.+|..++.+++. ..++...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id--~D~~~~~ 39 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD--TDVAIEQ 39 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE--HHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe--CchHHHH
Confidence 49999999999999999999999998764 4454443
No 158
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.86 E-value=0.0012 Score=75.52 Aligned_cols=96 Identities=25% Similarity=0.355 Sum_probs=55.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHh---cCCCEEEeechhHHHH----HhhhhhhHHHHHHHHH---------HhcCCeEEEE
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM----FVGVGASRVRDLFKKA---------KENAPCIVFV 329 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~se~~~~----~~G~~~~~ir~lF~~A---------~~~aP~ILfI 329 (703)
.++|.||||||||+++++++.. .+.+++.+..+.-... ..+.....+..++... ......+|+|
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlII 285 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLIV 285 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEEE
Confidence 6899999999999999999764 3677776644322111 1122222233332110 0113479999
Q ss_pred cCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 330 DEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
||+..+. ...+..|+..+. ....+++++-.+.
T Consensus 286 DEasml~--------------~~~~~~Ll~~~~---~~~~lilvGD~~Q 317 (574)
T 3e1s_A 286 DEVSMMG--------------DALMLSLLAAVP---PGARVLLVGDTDQ 317 (574)
T ss_dssp CCGGGCC--------------HHHHHHHHTTSC---TTCEEEEEECTTS
T ss_pred cCccCCC--------------HHHHHHHHHhCc---CCCEEEEEecccc
Confidence 9998872 234555655443 3456777775554
No 159
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.85 E-value=0.0005 Score=65.76 Aligned_cols=32 Identities=38% Similarity=0.771 Sum_probs=28.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEe
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (703)
++.|+|+|+||+|||++++.++..++.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 45699999999999999999999999877643
No 160
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.85 E-value=0.0033 Score=70.90 Aligned_cols=75 Identities=20% Similarity=0.318 Sum_probs=50.6
Q ss_pred Ce-EEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcc--cccccccCCCccceeeeecC
Q 005304 324 PC-IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD--ILDSALLRPGRFDRQVTVDV 400 (703)
Q Consensus 324 P~-ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~--~LD~aLlRpgRfdr~I~i~~ 400 (703)
|. +|+|||+..+.... ..+....+..+.. .....++.+|.+|.+|. .++..++. -|...|.+..
T Consensus 297 P~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar----~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV-------GKKVEELIARLAQ----KARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV 363 (512)
T ss_dssp CEEEEEEETHHHHHHHH-------HHHHHHHHHHHHH----HCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC
T ss_pred CcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHH----HhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEc
Confidence 54 88999998874310 1122333333332 22345789999999987 67777766 6777888999
Q ss_pred CChhhHHHHHH
Q 005304 401 PDIRGRTEILK 411 (703)
Q Consensus 401 Pd~~eR~~IL~ 411 (703)
.+..+.+.|+.
T Consensus 364 ~s~~dsr~ilg 374 (512)
T 2ius_A 364 SSKIDSRTILD 374 (512)
T ss_dssp SSHHHHHHHHS
T ss_pred CCHHHHHHhcC
Confidence 99888888874
No 161
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.82 E-value=0.00065 Score=64.74 Aligned_cols=35 Identities=29% Similarity=0.584 Sum_probs=29.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
.++|.||||+||||+++.+|..++.+++. ..++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d--~d~~~~ 40 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD--SDFLIE 40 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc--ccHHHH
Confidence 58999999999999999999999987764 444443
No 162
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.80 E-value=0.00066 Score=64.12 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=29.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
.++|.|+||+||||+++.+|..++.|++.. .++..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id~--D~~~~ 43 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLDT--DMIIS 43 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEEH--HHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC--hHHHH
Confidence 799999999999999999999999998753 44443
No 163
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.80 E-value=0.0038 Score=71.05 Aligned_cols=74 Identities=19% Similarity=0.290 Sum_probs=53.5
Q ss_pred eEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcc--cccccccCCCccceeeeecCCC
Q 005304 325 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD--ILDSALLRPGRFDRQVTVDVPD 402 (703)
Q Consensus 325 ~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~--~LD~aLlRpgRfdr~I~i~~Pd 402 (703)
.+|+|||++.+.... ..+....+.++..+ ....+|.+|.+|.+|. .++..++. -|...|.+...+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 589999999885321 12344444454443 3466899999999987 78877776 677788899999
Q ss_pred hhhHHHHHH
Q 005304 403 IRGRTEILK 411 (703)
Q Consensus 403 ~~eR~~IL~ 411 (703)
..+...|+.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888877774
No 164
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.79 E-value=0.00062 Score=65.72 Aligned_cols=31 Identities=42% Similarity=0.696 Sum_probs=26.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh-cCCCEEE
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGE-AGVPFFS 294 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e-~~~pfi~ 294 (703)
+..++|+|+||+|||++++.+|.. .|.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 346999999999999999999998 6866654
No 165
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.79 E-value=0.0013 Score=62.16 Aligned_cols=36 Identities=31% Similarity=0.670 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHH-hcCCCEEEeechhHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAG-EAGVPFFSISGSEFV 301 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~-e~~~pfi~is~se~~ 301 (703)
|+-|+|.|+||+||||+|+.++. ..+ +..++...+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~d~~r 38 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDYR 38 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC--cEEecHHHHH
Confidence 45699999999999999999998 444 4555544443
No 166
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.79 E-value=0.0008 Score=65.59 Aligned_cols=34 Identities=41% Similarity=0.625 Sum_probs=29.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEe
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (703)
..|.-|+|+|+||+||||+|+.++..++.+++..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3455699999999999999999999999886543
No 167
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.76 E-value=0.00055 Score=65.50 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=17.8
Q ss_pred CceEEEEcCCCChHHHHHHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAI 284 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAl 284 (703)
+.-+.|.||+|+|||||++++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 345889999999999999953
No 168
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.72 E-value=0.001 Score=63.53 Aligned_cols=38 Identities=26% Similarity=0.491 Sum_probs=30.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
.++-|+|.|+||+||||+++.++..++.+++ +..++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i--~~d~~~~ 42 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHL--SAGDLLR 42 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEe--eHHHHHH
Confidence 4567999999999999999999999987655 4444443
No 169
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.69 E-value=0.0014 Score=62.51 Aligned_cols=37 Identities=30% Similarity=0.555 Sum_probs=31.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~ 300 (703)
+.-+.|.|++|+||||+++.++..+ |.|++.++...+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 4568899999999999999999987 999998876543
No 170
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.69 E-value=0.001 Score=63.70 Aligned_cols=37 Identities=30% Similarity=0.514 Sum_probs=30.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
|.-|+|.|+||+||||+|+.++..++.+++ +..++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~~ 39 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGELLR 39 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHHH
Confidence 456999999999999999999999987664 5555543
No 171
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.65 E-value=0.001 Score=67.97 Aligned_cols=32 Identities=38% Similarity=0.512 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeec
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (703)
-++|.||||+|||++|+++|.+.+.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 48899999999999999999999998887654
No 172
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.65 E-value=0.0019 Score=69.62 Aligned_cols=68 Identities=26% Similarity=0.355 Sum_probs=43.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCCEEEeec-hhHH---------HHHhhhhhhHHHHHHHHHHhcCCeEEEEcC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISG-SEFV---------EMFVGVGASRVRDLFKKAKENAPCIVFVDE 331 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~-se~~---------~~~~G~~~~~ir~lF~~A~~~aP~ILfIDE 331 (703)
-+++.||+|+||||+.+++++.. +..++.+.- .++. ....+.....+.+.+..+-...|.+|++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 48999999999999999998755 233332211 0110 000111122345577777788999999999
Q ss_pred cc
Q 005304 332 ID 333 (703)
Q Consensus 332 ID 333 (703)
+-
T Consensus 205 p~ 206 (356)
T 3jvv_A 205 MR 206 (356)
T ss_dssp CC
T ss_pred CC
Confidence 83
No 173
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.65 E-value=0.0008 Score=62.88 Aligned_cols=29 Identities=34% Similarity=0.630 Sum_probs=25.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEe
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (703)
-|+|+||||+||||+++.+ ...|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4889999999999999999 8888886654
No 174
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.64 E-value=0.0011 Score=64.56 Aligned_cols=31 Identities=35% Similarity=0.763 Sum_probs=27.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (703)
++-|+|.|+||+||||+++.+++.++.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4569999999999999999999999877665
No 175
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.63 E-value=0.0081 Score=59.33 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=46.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEeech---------hHHHHHh-----------------hhhhhHHHHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS---------EFVEMFV-----------------GVGASRVRDLF 316 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s---------e~~~~~~-----------------G~~~~~ir~lF 316 (703)
.|++|+++|.|||++|-++|-++ |..+..+..- .+.+.+. .......+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 58999999999999999997655 7777777321 2333331 00123445566
Q ss_pred HHHHh----cCCeEEEEcCcccc
Q 005304 317 KKAKE----NAPCIVFVDEIDAV 335 (703)
Q Consensus 317 ~~A~~----~aP~ILfIDEID~L 335 (703)
+.+++ ....+|+|||+-..
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~a 132 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYM 132 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHH
T ss_pred HHHHHHHhcCCCCEEEEeCCCcc
Confidence 66654 34689999999654
No 176
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.62 E-value=0.00094 Score=63.61 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=23.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi 293 (703)
|.-|+|.|+||+||||+++.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456999999999999999999999999987
No 177
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.60 E-value=0.001 Score=64.06 Aligned_cols=37 Identities=24% Similarity=0.474 Sum_probs=29.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
+.-|+|.|+||+||||+++.+|..++.+++. ..++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~--~d~~~~ 45 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS--TGDLLR 45 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc--HHHHHH
Confidence 4469999999999999999999999887654 444443
No 178
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.58 E-value=0.0074 Score=63.62 Aligned_cols=73 Identities=25% Similarity=0.300 Sum_probs=47.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHH-------HH---hh----------hhhhHHHHHHH
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-------MF---VG----------VGASRVRDLFK 317 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~-------~~---~G----------~~~~~ir~lF~ 317 (703)
...|+-+++.||+|+||||++..+|..+ +..+..+++..+.. .+ .+ .......+.+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3456779999999999999999998755 55666666543211 11 01 11111233455
Q ss_pred HHHhcCCeEEEEcCcc
Q 005304 318 KAKENAPCIVFVDEID 333 (703)
Q Consensus 318 ~A~~~aP~ILfIDEID 333 (703)
.+....|.+++||+.-
T Consensus 181 ~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 5666788999999874
No 179
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.55 E-value=0.0015 Score=64.72 Aligned_cols=37 Identities=22% Similarity=0.468 Sum_probs=30.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
+.-|+|.|+||+||||+++.+|..++.+++. ..++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~~~~ 40 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLA--TGDMLR 40 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe--hhHHHH
Confidence 4579999999999999999999999976654 444443
No 180
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.55 E-value=0.0013 Score=61.97 Aligned_cols=35 Identities=26% Similarity=0.532 Sum_probs=29.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
-|+|.|+||+|||++++.+|..++.+++. ..++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id--~d~~~~ 38 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD--TDIFMQ 38 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc--ccHHHH
Confidence 58999999999999999999999987664 444443
No 181
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.53 E-value=0.0012 Score=63.15 Aligned_cols=35 Identities=34% Similarity=0.639 Sum_probs=28.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
.-++|.|+||+||||+++.+|..++.+++ +..++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i--~~d~~~ 39 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKL--STGDIL 39 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEE--CHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEe--cHHHHH
Confidence 35899999999999999999999987654 444443
No 182
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.53 E-value=0.0011 Score=65.96 Aligned_cols=37 Identities=19% Similarity=0.425 Sum_probs=29.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
+.-|+|.|+||+||||+++.+|..++.+++. .+++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~~~~ 43 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLS--SGDLLR 43 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE--HHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEe--chHHHH
Confidence 4579999999999999999999999876654 444443
No 183
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.53 E-value=0.0057 Score=61.23 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAG 289 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~ 289 (703)
..-+.|.||+|+|||||.+++++...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34588999999999999999998754
No 184
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.52 E-value=0.0011 Score=63.86 Aligned_cols=37 Identities=24% Similarity=0.483 Sum_probs=29.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
+.-|+|.|+||+||||+++.++..++.+++ +..++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i--~~d~~~~ 48 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHL--STGELLR 48 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEE--EHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE--cHHHHHH
Confidence 446999999999999999999999986554 4455543
No 185
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.51 E-value=0.0013 Score=64.81 Aligned_cols=30 Identities=33% Similarity=0.641 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEe
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (703)
.|+|.||||+||||+|+.++.+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 388999999999999999999998876654
No 186
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.49 E-value=0.0015 Score=64.64 Aligned_cols=36 Identities=28% Similarity=0.584 Sum_probs=29.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
..|+|.|+||+||||+++.+|..++.+++. ..++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~li~ 41 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLS--TGDMLR 41 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEe--hhHHHH
Confidence 469999999999999999999999977664 344443
No 187
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.49 E-value=0.0064 Score=73.64 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=34.3
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005304 234 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 234 ~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e 287 (703)
+|.++.+++|.+.+.... ..+-+.|+||.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~d-----------~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELR-----------PAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCC-----------SSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccC-----------CCeEEEEEcCCCccHHHHHHHHHHh
Confidence 899999888888765321 1346899999999999999999863
No 188
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.47 E-value=0.0014 Score=61.61 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=29.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
.|+|.|+||+|||++++.++..++.+++. ..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~--~d~~~~ 36 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD--VDEEVQ 36 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE--HHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE--CcHHHH
Confidence 48999999999999999999999988764 444443
No 189
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.47 E-value=0.0014 Score=64.52 Aligned_cols=30 Identities=33% Similarity=0.589 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEe
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (703)
-|+|.||||+||||+|+.++.+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999998877644
No 190
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.45 E-value=0.0015 Score=63.45 Aligned_cols=37 Identities=16% Similarity=0.393 Sum_probs=29.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
++-|+|+|+||+||||+++.++..++.+++. .+++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~--~d~~~~ 51 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS--AGDLLR 51 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEE--HHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe--HHHHHH
Confidence 4569999999999999999999999876554 444443
No 191
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.45 E-value=0.0015 Score=62.48 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAG 289 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~ 289 (703)
.-|+|.|+||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 192
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.44 E-value=0.0015 Score=66.27 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=30.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
.|.-|+|.||||+||||+|+.++...+.+++ +.+++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i--s~~~~~r 65 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL--STGDLLR 65 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEE--ecHHHHH
Confidence 4567999999999999999999999987665 4445443
No 193
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.39 E-value=0.002 Score=64.60 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=31.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
+.|+-|+|.||||+||+|.|+.||...+.+. ++..++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdllR 65 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLLR 65 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHHH
Confidence 4466799999999999999999999998654 56666554
No 194
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.38 E-value=0.0022 Score=64.30 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=29.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
+..|+|.|+||+||||+++.||..++.+++. ..++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~li~ 52 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA--TGDMLR 52 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec--HHHHHH
Confidence 3469999999999999999999999976654 445443
No 195
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.37 E-value=0.0038 Score=60.85 Aligned_cols=33 Identities=33% Similarity=0.454 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
-+.|.||+|+||||+++.+++ +|.+++ +..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~~ 36 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVVA 36 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc--chHHHH
Confidence 588999999999999999998 787765 455544
No 196
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.37 E-value=0.0022 Score=62.58 Aligned_cols=35 Identities=34% Similarity=0.693 Sum_probs=28.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~ 300 (703)
+.-+.|.||+|+||||+++.+++..|..+ +++.++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 44699999999999999999999987654 445443
No 197
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.36 E-value=0.0021 Score=61.32 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC---CCEEEeechhHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFV 301 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~---~pfi~is~se~~ 301 (703)
-|+|.|+||+||||+++.++..++ .++..++.+++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 489999999999999999999775 446666655443
No 198
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.36 E-value=0.0023 Score=60.70 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhH
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~ 300 (703)
.-++|.||||+||||+++.+++..|.+++ ++.++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i--~~d~~ 42 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFL--DGDFL 42 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEE--EGGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEE--eCccc
Confidence 46899999999999999999998876654 44443
No 199
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.35 E-value=0.0015 Score=67.22 Aligned_cols=67 Identities=22% Similarity=0.377 Sum_probs=42.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC----CCEEEeechhH----------H-HHHhhhhhhHHHHHHHHHHhcCCeEEEEc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAG----VPFFSISGSEF----------V-EMFVGVGASRVRDLFKKAKENAPCIVFVD 330 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~----~pfi~is~se~----------~-~~~~G~~~~~ir~lF~~A~~~aP~ILfID 330 (703)
-++|.||+|+||||+++++++... ..++ +..... + ...+|.....++..+..+-...|.+|++|
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~-~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illlD 105 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQTKSYHII-TIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 105 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEES
T ss_pred EEEEECCCCccHHHHHHHHHHhCCCCCCCEEE-EcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeC
Confidence 589999999999999999988541 2222 111110 0 00011112334666777767789999999
Q ss_pred Ccc
Q 005304 331 EID 333 (703)
Q Consensus 331 EID 333 (703)
|.-
T Consensus 106 Ep~ 108 (261)
T 2eyu_A 106 EMR 108 (261)
T ss_dssp CCC
T ss_pred CCC
Confidence 983
No 200
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.34 E-value=0.0088 Score=67.05 Aligned_cols=39 Identities=15% Similarity=0.032 Sum_probs=31.0
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEeech
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s 298 (703)
|.....-++|.|+||+|||+|+..+|..+ +.++++++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 44445569999999999999999987654 5688888764
No 201
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.33 E-value=0.005 Score=60.30 Aligned_cols=23 Identities=43% Similarity=0.684 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||+|+||||+++.+++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 37899999999999999999865
No 202
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.32 E-value=0.0017 Score=64.28 Aligned_cols=36 Identities=25% Similarity=0.476 Sum_probs=29.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
|.-|+|.||||+||||+++.+|..++.++ ++.+++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~--i~~d~~~ 40 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAH--ISAGDLL 40 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEE--CCHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCce--ecHHHHH
Confidence 45699999999999999999999998754 4554544
No 203
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.32 E-value=0.015 Score=65.72 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=62.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhH----HHHH--hh----------------------hhh
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF----VEMF--VG----------------------VGA 309 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~----~~~~--~G----------------------~~~ 309 (703)
+....-++|.||+|+|||+|++.++... |-+++++...+- .... .| .+.
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g 357 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLE 357 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHH
Confidence 3334468999999999999999998754 456666654321 1100 00 122
Q ss_pred hHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCc
Q 005304 310 SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (703)
Q Consensus 310 ~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 379 (703)
...+.++..+....|.+|+||=+..+-.. . ........+..++..+. ..++.+|.+++..
T Consensus 358 ~~q~~~~a~~l~~~p~llilDp~~~Ld~~--~----~~~~~~~~i~~ll~~l~----~~g~tvilvsh~~ 417 (525)
T 1tf7_A 358 DHLQIIKSEINDFKPARIAIDSLSALARG--V----SNNAFRQFVIGVTGYAK----QEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECHHHHTSS--S----CHHHHHHHHHHHHHHHH----HTTCEEEEEEECS
T ss_pred HHHHHHHHHHHhhCCCEEEEcChHHHHhh--C----ChHHHHHHHHHHHHHHH----hCCCEEEEEECcc
Confidence 34556677777788999999966555221 0 01123444555555543 2244555555543
No 204
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.28 E-value=0.0035 Score=61.14 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=29.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~ 300 (703)
+.-+.|.||+|+||||+++++|+.+ |...++++..++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 4468899999999999999999987 555556665544
No 205
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.24 E-value=0.012 Score=65.15 Aligned_cols=39 Identities=26% Similarity=0.134 Sum_probs=31.0
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeech
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s 298 (703)
|..+..-++|.|+||+|||++|..+|..+ |.++++++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 44455569999999999999999887654 7788888764
No 206
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.22 E-value=0.00085 Score=72.22 Aligned_cols=52 Identities=19% Similarity=0.387 Sum_probs=36.6
Q ss_pred cchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 005304 235 GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (703)
Q Consensus 235 G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (703)
..+...+.+.+.+.....+.. ...++|+||||+|||++++++|+.++.+|+.
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~--------~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNY--------RVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCS--------CEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCC--------eeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 345555555555544222211 1369999999999999999999999988855
No 207
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.21 E-value=0.0043 Score=60.78 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
|.|+|+||+|+|||+|++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 469999999999999999997653
No 208
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.21 E-value=0.0027 Score=67.52 Aligned_cols=35 Identities=34% Similarity=0.587 Sum_probs=30.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeech
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s 298 (703)
++.++|+||+|+|||++++.+|.+.+.+++.++.-
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 45799999999999999999999999887777543
No 209
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.20 E-value=0.0035 Score=59.97 Aligned_cols=31 Identities=26% Similarity=0.169 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEee
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSIS 296 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is 296 (703)
-|.|.|+||+||||+++.++..+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999987 89988764
No 210
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.18 E-value=0.0024 Score=67.96 Aligned_cols=69 Identities=23% Similarity=0.287 Sum_probs=46.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC--CCEEEeechh-H-----HHH--HhhhhhhHHHHHHHHHHhcCCeEEEEcCccc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSE-F-----VEM--FVGVGASRVRDLFKKAKENAPCIVFVDEIDA 334 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~se-~-----~~~--~~G~~~~~ir~lF~~A~~~aP~ILfIDEID~ 334 (703)
.++|.||+|+||||+++++++... .-.+.+.... + .+. ++..+..+.+..+..|....|.+|++||.-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 699999999999999999998763 2234443321 1 000 1100234567778888788999999999743
No 211
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.15 E-value=0.039 Score=60.90 Aligned_cols=73 Identities=23% Similarity=0.215 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHH----------HHhhh----------hhhHHHHHHHHH
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----------MFVGV----------GASRVRDLFKKA 319 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~----------~~~G~----------~~~~ir~lF~~A 319 (703)
.|+-+++.||+|+||||++..+|..+ |..+..+++.-+.. ...+. ........++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46779999999999999999998655 66776666542211 00111 111234455555
Q ss_pred HhcCCeEEEEcCcccc
Q 005304 320 KENAPCIVFVDEIDAV 335 (703)
Q Consensus 320 ~~~aP~ILfIDEID~L 335 (703)
....+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5567889999987543
No 212
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.14 E-value=0.018 Score=56.78 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=42.7
Q ss_pred ceEEEEcCCCChHH-HHHHHHHH--hcCCCEEEeech---hHHHHH---hhh-----hhhHHHHHHHHHHhcCCeEEEEc
Q 005304 265 KGVLLVGPPGTGKT-LLAKAIAG--EAGVPFFSISGS---EFVEMF---VGV-----GASRVRDLFKKAKENAPCIVFVD 330 (703)
Q Consensus 265 ~gvLL~GPpGTGKT-~LArAlA~--e~~~pfi~is~s---e~~~~~---~G~-----~~~~ir~lF~~A~~~aP~ILfID 330 (703)
+=.++|||.|+||| .|.+++.+ +.+..++++... .+.+.+ .|. ......++++..+ ...+|+||
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlID 98 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGID 98 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEES
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEEE
Confidence 35788999999999 88898855 457788888644 221110 110 0111223344332 34699999
Q ss_pred Ccccc
Q 005304 331 EIDAV 335 (703)
Q Consensus 331 EID~L 335 (703)
|+..+
T Consensus 99 EaQFf 103 (195)
T 1w4r_A 99 EGQFF 103 (195)
T ss_dssp SGGGC
T ss_pred chhhh
Confidence 99988
No 213
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.12 E-value=0.0092 Score=58.63 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=31.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc----CCCEEEeechhHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFV 301 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~se~~ 301 (703)
+.-++|.|+||+||||+++.++..+ |.+++.++...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 4468999999999999999999865 5778888866554
No 214
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.12 E-value=0.0062 Score=59.13 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=27.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~ 303 (703)
-|.|.|++|+||||+++.+++ .|++++. ..++...
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~--~d~~~~~ 37 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD--ADKLIHS 37 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE--HHHHHHG
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE--ccHHHHH
Confidence 488999999999999999999 8876655 4455443
No 215
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.12 E-value=0.0033 Score=61.94 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEe
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (703)
.|+|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 389999999999999999999998877554
No 216
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.11 E-value=0.0034 Score=61.94 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=28.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
.-+.|.||+|+||||+++.+++..+++++ +..++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~--d~g~i~ 40 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL--DSGAIY 40 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc--cCccee
Confidence 35899999999999999999999997765 444443
No 217
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.10 E-value=0.004 Score=67.40 Aligned_cols=72 Identities=25% Similarity=0.426 Sum_probs=43.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC----CCEEEeech-hH--------H-HHHhhhhhhHHHHHHHHHHhcCCeEE
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAG----VPFFSISGS-EF--------V-EMFVGVGASRVRDLFKKAKENAPCIV 327 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~~----~pfi~is~s-e~--------~-~~~~G~~~~~ir~lF~~A~~~aP~IL 327 (703)
.....++|.||+|+||||+++++++... ..++.+... ++ + ...+|.....++..+..+....|.+|
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 3344689999999999999999988542 223222210 00 0 00011122234556666666789999
Q ss_pred EEcCcc
Q 005304 328 FVDEID 333 (703)
Q Consensus 328 fIDEID 333 (703)
++||+-
T Consensus 214 lldE~~ 219 (372)
T 2ewv_A 214 FVGEMR 219 (372)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999983
No 218
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.09 E-value=0.0033 Score=62.49 Aligned_cols=34 Identities=38% Similarity=0.645 Sum_probs=28.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
-++|.||||+||+|.|+.||...+++. ++..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 378999999999999999999998765 5555554
No 219
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.08 E-value=0.004 Score=60.28 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=28.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-CCCEEEee
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSIS 296 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~-~~pfi~is 296 (703)
++-|.|.|++|+||||+++.++..+ |.+++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4569999999999999999999998 57887665
No 220
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.07 E-value=0.027 Score=63.51 Aligned_cols=111 Identities=20% Similarity=0.224 Sum_probs=63.4
Q ss_pred CCceEEEEcCCCChHHHHHHH--HHHhc--CCCEEEeechhHHHH------Hhhh-------------------------
Q 005304 263 IPKGVLLVGPPGTGKTLLAKA--IAGEA--GVPFFSISGSEFVEM------FVGV------------------------- 307 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArA--lA~e~--~~pfi~is~se~~~~------~~G~------------------------- 307 (703)
...-++|.||+|+|||+|++. +++-. +-..+++++.+.... ..|.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~ 117 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEV 117 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhh
Confidence 344699999999999999999 44432 455666665431100 0000
Q ss_pred -----hhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCcccc
Q 005304 308 -----GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (703)
Q Consensus 308 -----~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 382 (703)
-...............|.+|+|||.-++.+.- +.+......+..++..+.. .++.||.+|++.+.+
T Consensus 118 l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~-----~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 118 VGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY-----DASSVVRRELFRLVARLKQ----IGATTVMTTERIEEY 188 (525)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT-----CCHHHHHHHHHHHHHHHHH----HTCEEEEEEECSSSS
T ss_pred hcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc-----CCHHHHHHHHHHHHHHHHH----CCCEEEEEecCCCCc
Confidence 01122233444455778999999997763220 1122334455566665542 355677777776654
No 221
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.05 E-value=0.0033 Score=60.67 Aligned_cols=29 Identities=24% Similarity=0.534 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (703)
-|.|.|++|+||||+++.+|+.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 48899999999999999999999987764
No 222
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.02 E-value=0.0041 Score=62.67 Aligned_cols=31 Identities=32% Similarity=0.623 Sum_probs=27.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (703)
|.-+.|.||+|+||||+++.++...|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4579999999999999999999999876553
No 223
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.99 E-value=0.0049 Score=59.18 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEee
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSIS 296 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~---~~pfi~is 296 (703)
|.|.|++|+||||+++.++..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999988 99988654
No 224
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.98 E-value=0.022 Score=59.65 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEeech
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s 298 (703)
.++-++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45679999999999999999998643 5577766654
No 225
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.96 E-value=0.009 Score=58.59 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=30.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 306 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G 306 (703)
-|.|+|++||||||+++.++..+|++++ ++.++.....+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vi--d~D~~~~~~~~ 52 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVV--NVDRIGHEVLE 52 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEE--ECcHHHHHHHH
Confidence 4889999999999999999998887765 45556544443
No 226
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.94 E-value=0.0059 Score=61.89 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=31.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCC--------EEEeechhHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVP--------FFSISGSEFV 301 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~p--------fi~is~se~~ 301 (703)
|.-|.|.|++|+||||+|+.++..++.+ +..++..++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 4569999999999999999999999877 3467777665
No 227
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.93 E-value=0.0053 Score=59.50 Aligned_cols=30 Identities=37% Similarity=0.661 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEe
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (703)
-+.|.|++|+|||++++.+|..++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 588999999999999999999999887753
No 228
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.91 E-value=0.0042 Score=61.84 Aligned_cols=34 Identities=18% Similarity=0.434 Sum_probs=27.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
-|+|.|+||+||||+++.++..++.+++ +..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i--~~dd~~ 35 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHI--ESGGIF 35 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE--chHHHH
Confidence 3889999999999999999999987554 444544
No 229
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.90 E-value=0.0052 Score=59.31 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=29.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~ 303 (703)
|.-|.|.|++|+|||++++.+|.. |.+++ +..++...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~~~~ 44 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDALAAR 44 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHHHHH
Confidence 456999999999999999999998 77765 45555443
No 230
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.82 E-value=0.0078 Score=58.81 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAG 289 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~~ 289 (703)
..++-++|.||||+||||+++.++...+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3455799999999999999999999874
No 231
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.76 E-value=0.034 Score=53.72 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
.+++.+|+|+|||.++-..+.+
T Consensus 50 ~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 50 NIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999998877654
No 232
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.76 E-value=0.024 Score=65.24 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=18.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
-++++||||||||+++..+...
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHH
Confidence 5999999999999998877543
No 233
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.75 E-value=0.0078 Score=58.33 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=25.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCC--EEE
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVP--FFS 294 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~p--fi~ 294 (703)
.-|+|.|+||+||||+++.++..++.. ++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 36 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYL 36 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEE
Confidence 468999999999999999999988763 544
No 234
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.74 E-value=0.0062 Score=61.75 Aligned_cols=35 Identities=26% Similarity=0.499 Sum_probs=28.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~ 300 (703)
|.-+.|.||||+|||++++.+|..++.+++ +...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~--d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYL--DTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc--cCCcH
Confidence 446999999999999999999999987664 44444
No 235
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.72 E-value=0.0088 Score=58.82 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAG 289 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~ 289 (703)
++-+.|.||+|+||||+++.++....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44688999999999999999998763
No 236
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.70 E-value=0.03 Score=56.54 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.-+.|.||+|+|||||++.+++..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998854
No 237
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.69 E-value=0.011 Score=56.75 Aligned_cols=37 Identities=32% Similarity=0.364 Sum_probs=29.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~ 300 (703)
+.-++|.|+||+||||+++.+|..+ +.++..++...+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 4568999999999999999999876 455666665444
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.67 E-value=0.011 Score=56.78 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=22.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.+-+.|.||+|+|||||++.+++..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999999865
No 239
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.65 E-value=0.031 Score=59.68 Aligned_cols=38 Identities=24% Similarity=0.125 Sum_probs=30.2
Q ss_pred cCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeec
Q 005304 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 297 (703)
Q Consensus 260 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~ 297 (703)
|..+..-++|.|+||+|||+||..+|..+ +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34444469999999999999999997763 788888875
No 240
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.65 E-value=0.0031 Score=61.44 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=24.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCC
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVP 291 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~p 291 (703)
++-|+|.|+||+||||+++.++..++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4569999999999999999999887544
No 241
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.58 E-value=0.0066 Score=62.13 Aligned_cols=30 Identities=40% Similarity=0.633 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEe
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (703)
.+.|.|++|+||||+++.+|..++.+|+..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 699999999999999999999999877653
No 242
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.58 E-value=0.015 Score=57.37 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.++-+.|.||+|+|||+|++++++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568999999999999999998764
No 243
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.55 E-value=0.026 Score=55.30 Aligned_cols=70 Identities=17% Similarity=0.129 Sum_probs=41.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHH---H----HHhhhh-----hhHHHHHHHHHHhcCCeEEEE
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV---E----MFVGVG-----ASRVRDLFKKAKENAPCIVFV 329 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~---~----~~~G~~-----~~~ir~lF~~A~~~aP~ILfI 329 (703)
+-.+++||+|+|||+.+-.++..+ +..++.+...... + ...|.. .....++++.+.. ...+|+|
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvViI 87 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIAI 87 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEEE
Confidence 357889999999999988887765 6666666422111 0 011110 0111345554432 3479999
Q ss_pred cCcccc
Q 005304 330 DEIDAV 335 (703)
Q Consensus 330 DEID~L 335 (703)
||++.+
T Consensus 88 DEaqfl 93 (191)
T 1xx6_A 88 DEVQFF 93 (191)
T ss_dssp CSGGGS
T ss_pred ECCCCC
Confidence 999887
No 244
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.52 E-value=0.004 Score=60.68 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=23.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAG 289 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~ 289 (703)
|.-|+|.|+||+||||+++.++..++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45699999999999999999998763
No 245
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.49 E-value=0.013 Score=60.52 Aligned_cols=37 Identities=27% Similarity=0.602 Sum_probs=28.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-CCCEEEeechhHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEFVE 302 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~-~~pfi~is~se~~~ 302 (703)
|+-|+|.|+||+||||+++.++... +. ..++...+..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~--~~i~~D~~r~ 39 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGF--YNINRDDYRQ 39 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTE--EEECHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCc--EEecccHHHH
Confidence 4568999999999999999999864 54 4455544443
No 246
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.47 E-value=0.042 Score=66.06 Aligned_cols=108 Identities=12% Similarity=0.117 Sum_probs=55.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh-----cCCCE--------------EEeechhHHHHHhhhhhhHHHHHHHHHH-hcC
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGE-----AGVPF--------------FSISGSEFVEMFVGVGASRVRDLFKKAK-ENA 323 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e-----~~~pf--------------i~is~se~~~~~~G~~~~~ir~lF~~A~-~~a 323 (703)
..-++|.||.|+||||+.|.++.- .|..+ -.+...+.............++....++ ...
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~ 752 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATS 752 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCT
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccC
Confidence 346899999999999999998742 22211 1111112111111111111222222221 467
Q ss_pred CeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCCccccc
Q 005304 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (703)
Q Consensus 324 P~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 383 (703)
|.+|++||.-+= -+..........++..+.. ..+..+|.+|+..+...
T Consensus 753 p~LlLLDEP~~G---------lD~~~~~~i~~~il~~L~~---~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 753 QSLVILDELGRG---------TSTHDGIAIAYATLEYFIR---DVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp TCEEEEESTTTT---------SCHHHHHHHHHHHHHHHHH---TTCCEEEEECSCGGGGG
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHHHHHHHHH---hcCCeEEEEeCcHHHHH
Confidence 899999998442 1222333344456655421 23567888898876544
No 247
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.46 E-value=0.0069 Score=64.70 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=30.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeech
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s 298 (703)
++-++|.||+|+|||+|+..||.+++.+++..+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 34699999999999999999999999887766543
No 248
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.43 E-value=0.021 Score=55.98 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=22.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAG 289 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~ 289 (703)
+.-+.|.||+|+|||||++.+++...
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44688999999999999999998774
No 249
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.40 E-value=0.0071 Score=59.03 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=24.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc-CCCEEE
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA-GVPFFS 294 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~-~~pfi~ 294 (703)
.-+.|.|++|+||||+++.+++.. +++++.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 458899999999999999999987 554443
No 250
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.39 E-value=0.025 Score=57.21 Aligned_cols=35 Identities=31% Similarity=0.602 Sum_probs=28.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
-+-|.||||+||||+|+.|+...+++++ +..++..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdllR 44 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQI--STGDMLR 44 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCee--echHHHH
Confidence 3678999999999999999999998866 4445443
No 251
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.39 E-value=0.0098 Score=58.52 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=28.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
|.-|.|.|++|+||||+++.++. +|.+++ +..++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~i--d~D~~~~ 39 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVI--DADIIAR 39 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEE--EHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEE--EccHHHH
Confidence 34689999999999999999998 777655 4444443
No 252
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.38 E-value=0.01 Score=58.30 Aligned_cols=30 Identities=30% Similarity=0.535 Sum_probs=26.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (703)
..+.|.|++|+|||++++.++..+|.+++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 468999999999999999999999987654
No 253
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.37 E-value=0.037 Score=62.54 Aligned_cols=41 Identities=29% Similarity=0.473 Sum_probs=33.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF 304 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~~ 304 (703)
|.-|+|+|.||+|||++|+.+|..+ +.+...++..++....
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~ 78 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA 78 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh
Confidence 4468999999999999999999987 5666677877776543
No 254
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.32 E-value=0.0093 Score=63.02 Aligned_cols=36 Identities=33% Similarity=0.605 Sum_probs=30.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeech
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s 298 (703)
.|+-++|.||+|+|||+||..+|...+.+++..+.-
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 356789999999999999999999998777766543
No 255
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.27 E-value=0.012 Score=58.81 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=29.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
.+.-+.|.|++|+|||++++.+|+.+|++++ +..++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~--d~d~~~ 51 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYL--DTGAMY 51 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcee--cCCCee
Confidence 3446899999999999999999999998765 444444
No 256
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.23 E-value=0.023 Score=62.28 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhH
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~ 300 (703)
.|.-|+|+|+||+||||+|+.++...+.++ ++..++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~--i~~D~~ 292 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTL 292 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEE--CCGGGS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEE--EccchH
Confidence 345689999999999999999999987654 444443
No 257
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.19 E-value=0.013 Score=59.46 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=25.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi 293 (703)
-+.|.||+|+||||+++.+|..+|.+++
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 5889999999999999999999998765
No 258
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.16 E-value=0.016 Score=55.60 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~ 301 (703)
-+.|.||+|+||||+++.+++..+. .+.++..++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~~ 38 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDIIN 38 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccchh
Confidence 4789999999999999999985532 3556665554
No 259
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.15 E-value=0.078 Score=51.02 Aligned_cols=17 Identities=41% Similarity=0.464 Sum_probs=15.0
Q ss_pred ceEEEEcCCCChHHHHH
Q 005304 265 KGVLLVGPPGTGKTLLA 281 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LA 281 (703)
+.+++.+|+|+|||..+
T Consensus 39 ~~~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAF 55 (207)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 47999999999999864
No 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.13 E-value=0.012 Score=56.93 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.+.-+.|.||+|+||||+++.+++..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34468999999999999999999876
No 261
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.11 E-value=0.035 Score=64.07 Aligned_cols=37 Identities=30% Similarity=0.555 Sum_probs=32.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~ 300 (703)
+.-|+|+|.||+||||+|++++..+ |.+++.++...+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 4569999999999999999999998 999999876554
No 262
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.04 E-value=0.039 Score=53.73 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=29.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~ 300 (703)
+.-+.|.||+|+||||+++.+++.+ +.+++..+...+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 4468899999999999999999865 667776654443
No 263
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.01 E-value=0.015 Score=63.25 Aligned_cols=23 Identities=48% Similarity=0.741 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||+|+|||||.|++|+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 48899999999999999999843
No 264
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.01 E-value=0.1 Score=52.02 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=17.4
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 005304 265 KGVLLVGPPGTGKTLLAKAIA 285 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA 285 (703)
+.+++.||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 469999999999998766553
No 265
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.99 E-value=0.014 Score=60.53 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=28.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~ 302 (703)
|.-|.|+|++|+||||+|+.++ +.|.++ +++.++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~--id~D~~~~ 110 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYI--IDSDHLGH 110 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEE--EEHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcE--EehhHHHH
Confidence 4469999999999999999999 677765 45555543
No 266
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.97 E-value=0.32 Score=47.29 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=32.1
Q ss_pred ccccccccchHHHHHHHHHHHHhcCchhhhhccC---CCCceEEEEcCCCChHHHHHHHHHHh
Q 005304 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~---~~p~gvLL~GPpGTGKT~LArAlA~e 287 (703)
.+|+|+.-.++..+.+.+. .+..+..++.... ...+.+++.+|+|+|||..+-..+-+
T Consensus 14 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 3577775444554444331 1223333332211 11257999999999999876555443
No 267
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.97 E-value=0.01 Score=67.02 Aligned_cols=69 Identities=25% Similarity=0.324 Sum_probs=44.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCEEEeechh-HHH---HH--------hhhhhhHHHHHHHHHHhcCCeEEEEc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSE-FVE---MF--------VGVGASRVRDLFKKAKENAPCIVFVD 330 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~se-~~~---~~--------~G~~~~~ir~lF~~A~~~aP~ILfID 330 (703)
.+++|.||+|+||||+++++++... ...+.+.... +.- .+ .+.....+.+++..+....|.+++++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 3699999999999999999998763 3344443321 110 00 01111234556666667889999999
Q ss_pred Ccc
Q 005304 331 EID 333 (703)
Q Consensus 331 EID 333 (703)
|+-
T Consensus 341 Eir 343 (511)
T 2oap_1 341 EVR 343 (511)
T ss_dssp CCC
T ss_pred CcC
Confidence 973
No 268
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.90 E-value=0.037 Score=56.99 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||+|+|||||++++++-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58899999999999999998743
No 269
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.83 E-value=0.12 Score=62.37 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAG 286 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~ 286 (703)
.-++|.||.|+||||+.|.+|.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999953
No 270
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.80 E-value=0.015 Score=62.10 Aligned_cols=32 Identities=28% Similarity=0.338 Sum_probs=27.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEee
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (703)
+-|+|.||+|+|||++|+.+|..++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46899999999999999999999986555444
No 271
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.77 E-value=0.018 Score=56.70 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (703)
-|.|.|++|||||++++.+|..+|.+|+-
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58999999999999999999999999883
No 272
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.77 E-value=0.022 Score=55.55 Aligned_cols=25 Identities=44% Similarity=0.755 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
++-+.|.||+|+|||||++.+++..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3469999999999999999998865
No 273
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.77 E-value=0.072 Score=57.61 Aligned_cols=22 Identities=45% Similarity=0.691 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
-+.|.||+|+|||||.|++|+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4789999999999999999984
No 274
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.76 E-value=0.015 Score=56.80 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=23.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAG 289 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~ 289 (703)
+.-+.|.||+|+||||+++.+++..+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34588999999999999999999876
No 275
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.73 E-value=0.015 Score=57.67 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=26.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEe
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (703)
.++++|.||+|+|||++|..++...+ +++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsd 64 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIAD 64 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEec
Confidence 45899999999999999999998866 55543
No 276
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.73 E-value=0.018 Score=61.02 Aligned_cols=33 Identities=30% Similarity=0.297 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEeec
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (703)
+-++|.||+|+|||+|+..+|...+..++..+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 358899999999999999999998776655544
No 277
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.72 E-value=0.042 Score=59.19 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||+|+|||||.|++|+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 48899999999999999999843
No 278
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.72 E-value=0.026 Score=56.48 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=38.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHH-------HHHhhhh-----hhHHHHHHHHHHhcCCeEEEEcC
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV-------EMFVGVG-----ASRVRDLFKKAKENAPCIVFVDE 331 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~-------~~~~G~~-----~~~ir~lF~~A~~~aP~ILfIDE 331 (703)
.+++||.|+|||+.+-.++..+ +..++.+....-. ....|.. .....++++.+. ....+|+|||
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~-~~~dvViIDE 109 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHIT-EEMDVIAIDE 109 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGCC-SSCCEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHh-cCCCEEEEEC
Confidence 5689999999999888776644 7777766532110 0000110 000123343332 2356999999
Q ss_pred cccc
Q 005304 332 IDAV 335 (703)
Q Consensus 332 ID~L 335 (703)
+..+
T Consensus 110 aQF~ 113 (214)
T 2j9r_A 110 VQFF 113 (214)
T ss_dssp GGGS
T ss_pred cccC
Confidence 9987
No 279
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.64 E-value=0.059 Score=59.19 Aligned_cols=94 Identities=19% Similarity=0.304 Sum_probs=51.5
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhcCC---CEEEeech-hHH-
Q 005304 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV---PFFSISGS-EFV- 301 (703)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~~~---pfi~is~s-e~~- 301 (703)
..+++++.-....+..+.+++ ..+. .-++|.||+|+||||+.+++++.... .++.+.-. ++.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~---~~~g----------gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~ 209 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLI---KRPH----------GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI 209 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHH---TSSS----------EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC
T ss_pred CCCHHHcCCCHHHHHHHHHHH---HhcC----------CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhcc
Confidence 467788754444444444442 2221 14789999999999999999987632 33332211 100
Q ss_pred H-----HHhhhhhhHHHHHHHHHHhcCCeEEEEcCcc
Q 005304 302 E-----MFVGVGASRVRDLFKKAKENAPCIVFVDEID 333 (703)
Q Consensus 302 ~-----~~~G~~~~~ir~lF~~A~~~aP~ILfIDEID 333 (703)
. .+.....-...+.+..+-...|.++++.|+.
T Consensus 210 ~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 210 DGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp SSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred CCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 0 0000000112334445555689999999973
No 280
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.56 E-value=0.019 Score=55.24 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
+-+.|.||+|+||||+++.+++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458899999999999999999865
No 281
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.52 E-value=0.021 Score=55.14 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.-+.|.||+|+||||+++.+++..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358899999999999999999875
No 282
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.45 E-value=0.24 Score=49.96 Aligned_cols=23 Identities=35% Similarity=0.710 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e 287 (703)
..|+|.|.||+|||+|..++.+.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 36999999999999999999764
No 283
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.41 E-value=0.035 Score=59.96 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||+|+|||||.|++++-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 48899999999999999998843
No 284
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.30 E-value=0.2 Score=59.39 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e 287 (703)
..-++|.||.|+||||+.|.++.-
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 346899999999999999999863
No 285
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.29 E-value=0.16 Score=52.85 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEeec
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISG 297 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~ 297 (703)
+.+++.+|+|+|||+.+-..+-+. +...+.+..
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P 82 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECS
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcC
Confidence 579999999999998865554432 445555543
No 286
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.20 E-value=0.081 Score=55.93 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=29.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeec
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 297 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~ 297 (703)
...++-++++||+|+||||++..+|..+ +..+..+++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3456779999999999999999998754 566666654
No 287
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.15 E-value=0.029 Score=54.57 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=28.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEeechh
Q 005304 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~se 299 (703)
+|++|++|+|||++|..++.. +.|.+|+..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88998887754
No 288
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.13 E-value=0.028 Score=55.85 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=15.9
Q ss_pred CceEEEEcCCCChHHHHHHHHH-Hhc
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIA-GEA 288 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA-~e~ 288 (703)
..-+.|.||+|+||||+++.++ +..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3458899999999999999999 764
No 289
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.06 E-value=0.15 Score=56.24 Aligned_cols=72 Identities=24% Similarity=0.278 Sum_probs=47.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEeechhHH----HH---H---hh---------hh-hhHHHHHHH
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFV----EM---F---VG---------VG-ASRVRDLFK 317 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~se~~----~~---~---~G---------~~-~~~ir~lF~ 317 (703)
..|+.++++|++|+||||++-.+|..+ |..+..+++.-+. +. + .+ .. ...+++.++
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 457789999999999999999997644 7778877775321 11 0 01 01 222356677
Q ss_pred HHHhcCCeEEEEcCcc
Q 005304 318 KAKENAPCIVFVDEID 333 (703)
Q Consensus 318 ~A~~~aP~ILfIDEID 333 (703)
.++.....+++||=.-
T Consensus 178 ~~~~~~~D~VIIDTpG 193 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAG 193 (433)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHhCCCCEEEEECCC
Confidence 7665555789988743
No 290
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.06 E-value=0.25 Score=48.21 Aligned_cols=52 Identities=21% Similarity=0.180 Sum_probs=29.8
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcc---CCCCceEEEEcCCCChHHHH
Q 005304 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIG---ARIPKGVLLVGPPGTGKTLL 280 (703)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg---~~~p~gvLL~GPpGTGKT~L 280 (703)
..+|+++.-.+...+.+.+. .+..+..++... +...+.+++.+|+|+|||..
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHH
Confidence 35688875445555444332 123333333221 11235799999999999977
No 291
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.04 E-value=0.12 Score=54.96 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
..|.-+.|.||+|+||||+++.+|+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 446679999999999999999999865
No 292
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.00 E-value=0.099 Score=57.65 Aligned_cols=36 Identities=33% Similarity=0.365 Sum_probs=29.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeech
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s 298 (703)
.|+.++++|++|+||||++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 45689999999999999999998865 5667767654
No 293
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.97 E-value=0.15 Score=57.03 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
..+.-++|.||+|+||||+++.||+..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 345568899999999999999999865
No 294
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.97 E-value=0.11 Score=54.15 Aligned_cols=73 Identities=27% Similarity=0.266 Sum_probs=46.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhH----HH---HH---hh---------hhh-hHHHHHHHHH
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF----VE---MF---VG---------VGA-SRVRDLFKKA 319 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~----~~---~~---~G---------~~~-~~ir~lF~~A 319 (703)
.++-+.++|++|+|||++++.+|... +..+..+++.-. .. .+ .+ ..+ ...+..++.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678889999999999999998754 556665554211 00 00 01 011 2235567777
Q ss_pred HhcCCeEEEEcCcccc
Q 005304 320 KENAPCIVFVDEIDAV 335 (703)
Q Consensus 320 ~~~aP~ILfIDEID~L 335 (703)
+...+.+|+||+--.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 6567789999997444
No 295
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.96 E-value=0.027 Score=61.58 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=27.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEee
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (703)
++-++|.||+|+|||+|+..+|...+..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 346889999999999999999999987665543
No 296
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.93 E-value=0.17 Score=50.07 Aligned_cols=53 Identities=23% Similarity=0.172 Sum_probs=29.3
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhcc---CCCCceEEEEcCCCChHHHHH
Q 005304 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIG---ARIPKGVLLVGPPGTGKTLLA 281 (703)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg---~~~p~gvLL~GPpGTGKT~LA 281 (703)
..+|+++.-.+...+.+.+. .+..+..++... +...+.+++.+|+|+|||..+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 34688875444554444321 122233333211 112357999999999999854
No 297
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.83 E-value=0.1 Score=58.69 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=28.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeec
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 297 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~ 297 (703)
..|+.|+++|+||+||||++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 346789999999999999999998654 667777766
No 298
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.83 E-value=0.18 Score=50.89 Aligned_cols=90 Identities=21% Similarity=0.170 Sum_probs=49.4
Q ss_pred eEEEEcCCCChHHHHHHHHHH---hcCCCEEEeech-------hHHHHHhhhh-----hhHHHHHHHHHHhcCCeEEEEc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGS-------EFVEMFVGVG-----ASRVRDLFKKAKENAPCIVFVD 330 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~---e~~~pfi~is~s-------e~~~~~~G~~-----~~~ir~lF~~A~~~aP~ILfID 330 (703)
-.+++||.|+|||+.+-..+. ..|..++.+... .+.+.. |.. .....++++.+ ....+|+||
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvViID 97 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIGID 97 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEEEE
Confidence 477899999999977765544 346666655421 111111 110 01112345554 335699999
Q ss_pred CcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCC
Q 005304 331 EIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (703)
Q Consensus 331 EID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 378 (703)
|+..+. + +.+++..++. .++.||++.-+
T Consensus 98 EaQF~~-----------~-----v~el~~~l~~----~gi~VI~~GL~ 125 (234)
T 2orv_A 98 EGQFFP-----------D-----IVEFCEAMAN----AGKTVIVAALD 125 (234)
T ss_dssp SGGGCT-----------T-----HHHHHHHHHH----TTCEEEEECCS
T ss_pred chhhhh-----------h-----HHHHHHHHHh----CCCEEEEEecc
Confidence 998871 1 4455555553 45567777644
No 299
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.79 E-value=0.035 Score=57.90 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=29.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC-----CEEEe-echhH
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----PFFSI-SGSEF 300 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~-----pfi~i-s~se~ 300 (703)
..|.-|.|.||+|+||||+++.+++.++. +.+.+ +...|
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 34556889999999999999999887642 33444 66554
No 300
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.78 E-value=0.12 Score=51.63 Aligned_cols=18 Identities=33% Similarity=0.350 Sum_probs=15.5
Q ss_pred ceEEEEcCCCChHHHHHH
Q 005304 265 KGVLLVGPPGTGKTLLAK 282 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LAr 282 (703)
+.+++.+|+|+|||..+-
T Consensus 67 ~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCEEEEECTTSCHHHHHH
T ss_pred CCEEEECCCcCHHHHHHH
Confidence 579999999999998743
No 301
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.78 E-value=0.12 Score=61.19 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=19.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e 287 (703)
..+++.||+|+|||+++..+..+
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999977777544
No 302
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.76 E-value=0.15 Score=56.56 Aligned_cols=40 Identities=28% Similarity=0.482 Sum_probs=31.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM 303 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~~ 303 (703)
+.-|+|.|.||+|||++++.++..+ ..+...++..++...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~ 81 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRD 81 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhh
Confidence 4469999999999999999999876 456666666555443
No 303
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.71 E-value=0.035 Score=55.09 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=21.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.-+.|.||+|+|||||++.+++..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358899999999999999999876
No 304
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.71 E-value=0.11 Score=59.27 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=33.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC----CCEEEeechhHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAG----VPFFSISGSEFVE 302 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~----~pfi~is~se~~~ 302 (703)
+.-|+|.|+||+||||+|++++..++ .+++.++...+..
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~ 438 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH 438 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH
Confidence 45689999999999999999999875 8899888766543
No 305
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=93.70 E-value=0.2 Score=49.49 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=29.6
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccC---CCCceEEEEcCCCChHHHHH
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLA 281 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~---~~p~gvLL~GPpGTGKT~LA 281 (703)
+..+|+++.-.+...+.+.+. .+..+..++.... ...+.+++.+|+|+|||..+
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAA--GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 445788875444454444321 1223333332211 12357999999999999763
No 306
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.67 E-value=0.17 Score=59.84 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e 287 (703)
..-++|.||.|+||||+.|.++.-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 346899999999999999999863
No 307
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.61 E-value=0.11 Score=51.18 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=31.1
Q ss_pred cCCCccccccccchH-HHHHHHHHHHHhcCchhhhhccC---CCCceEEEEcCCCChHHHHHH
Q 005304 224 PNTGVTFDDVAGVDE-AKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLAK 282 (703)
Q Consensus 224 ~~~~~~f~dv~G~de-~k~~L~e~v~~l~~p~~~~~lg~---~~p~gvLL~GPpGTGKT~LAr 282 (703)
+.+..+|+|..+... ..+.+.+. .+..+..++.... ...+.+++.+|+|+|||..+-
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 345567888655543 33333221 1233333333211 123579999999999997643
No 308
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.53 E-value=0.041 Score=53.78 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~ 289 (703)
-+.|.||+|+|||||++++++...
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 588999999999999999999864
No 309
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.53 E-value=0.31 Score=51.89 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=25.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeec
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 297 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~ 297 (703)
.-|.|+|+||+|||+++.+++..+ |..+..+++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 368999999999999999998764 555554443
No 310
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.47 E-value=0.051 Score=51.49 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||.|+|||||+|++++..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999999986
No 311
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.44 E-value=0.11 Score=54.39 Aligned_cols=71 Identities=25% Similarity=0.261 Sum_probs=45.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHH----H---HH---hh---------h-hhhHHHHHHHHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----E---MF---VG---------V-GASRVRDLFKKAK 320 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~----~---~~---~G---------~-~~~~ir~lF~~A~ 320 (703)
++-+++.|++|+|||+++..+|..+ +..+..+++.-+. + .+ .+ . ....+++.++.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 6678899999999999999998755 6667766654211 0 00 01 0 1122345666665
Q ss_pred hcCCeEEEEcCccc
Q 005304 321 ENAPCIVFVDEIDA 334 (703)
Q Consensus 321 ~~aP~ILfIDEID~ 334 (703)
.....+++||=.-.
T Consensus 178 ~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 178 SEKMEIIIVDTAGR 191 (297)
T ss_dssp HTTCSEEEEECCCS
T ss_pred hCCCCEEEEeCCCC
Confidence 45667899887543
No 312
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.43 E-value=0.034 Score=57.97 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=25.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC---CCEEEeechhHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFV 301 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~---~pfi~is~se~~ 301 (703)
-|.|.||+|+||||+|+.++..++ ..+..+++.++.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 588999999999999999998765 455666666554
No 313
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.40 E-value=0.086 Score=55.28 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
...+.-+.|.||+|+||||+++.+|+..
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3455678999999999999999999865
No 314
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.39 E-value=0.041 Score=55.23 Aligned_cols=29 Identities=24% Similarity=0.494 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (703)
-|.|.|++|||||++++.+|..+|.+|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 58899999999999999999999999864
No 315
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=93.39 E-value=0.23 Score=54.44 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=29.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeech-hHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS-EFV 301 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s-e~~ 301 (703)
.++|++|+|+|||..+-.++...+.+++.+... .+.
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~ 146 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHH
Confidence 599999999999999988888888888877655 443
No 316
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=93.36 E-value=0.17 Score=58.81 Aligned_cols=33 Identities=39% Similarity=0.474 Sum_probs=22.9
Q ss_pred ceEEEEcCCCChHHHHHHHH-HHhc--CCCEEEeec
Q 005304 265 KGVLLVGPPGTGKTLLAKAI-AGEA--GVPFFSISG 297 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAl-A~e~--~~pfi~is~ 297 (703)
+.+++.+|+|+|||+.+-.. .... +...+++..
T Consensus 41 ~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P 76 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVP 76 (702)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 47999999999999988433 2222 556666654
No 317
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=93.34 E-value=0.18 Score=44.15 Aligned_cols=63 Identities=14% Similarity=0.232 Sum_probs=40.2
Q ss_pred CCccccHHHHH-HHHhcCCeeEEEEeeCCeEEEEEeccccCCCceeEEEEEcCCCcHHHHHHHHhc
Q 005304 92 SSSRMSYSRFL-EYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREK 156 (703)
Q Consensus 92 ~~~~~~y~~f~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (703)
+..+|||++|. ++|++|.|++|.+.. ...+.+...+.........+.+.++. .+.+.+.|++.
T Consensus 14 ~~~eIs~~eF~~~~L~kG~V~kI~V~n-k~~v~V~l~~~a~~~~~~~~~f~IGS-vd~FE~~Le~a 77 (99)
T 2lna_A 14 SGREITWKDFVNNYLSKGVVDRLEVVN-KRFVRVTFTPGKTPVDGQYVWFNIGS-VDTFERNLETL 77 (99)
T ss_dssp SSEECCHHHHHHHTGGGTCEEEEEEET-TTEEEEEECTTTSCSTTCCEEEECSC-HHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHhhCCCceEEEEEc-CCEEEEEEcCCCcCCCCceEEEEeCC-HHHHHHHHHHH
Confidence 45689999999 799999999999874 43444443332211112335667763 45666666543
No 318
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.32 E-value=0.11 Score=59.98 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=23.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh---cCCCEEEeechh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSE 299 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~se 299 (703)
-.||.||||||||+.+-.+... .+.+++.+..+.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 3799999999999765444332 266666666543
No 319
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.20 E-value=0.14 Score=50.81 Aligned_cols=55 Identities=20% Similarity=0.161 Sum_probs=30.8
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhcc---CCCCceEEEEcCCCChHHHHHH
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIG---ARIPKGVLLVGPPGTGKTLLAK 282 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg---~~~p~gvLL~GPpGTGKT~LAr 282 (703)
+..+|+++.=.+...+.+.+. .+..+..++... +...+.+++.+|+|+|||..+-
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAY--GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 345799985444444443321 133333333221 1123579999999999997643
No 320
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.18 E-value=0.25 Score=56.29 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.-+.|.||+|+|||||++.+++..
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 358899999999999999998854
No 321
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.17 E-value=0.051 Score=54.65 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=23.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVP 291 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~p 291 (703)
-+-|.||+|+||||+++.+++.+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 47899999999999999999987654
No 322
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.15 E-value=0.023 Score=55.20 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~ 289 (703)
-|.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998774
No 323
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.13 E-value=0.32 Score=53.48 Aligned_cols=72 Identities=28% Similarity=0.260 Sum_probs=44.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHH----H---HH---hh---------hh-hhHHHHHHHHH
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----E---MF---VG---------VG-ASRVRDLFKKA 319 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~----~---~~---~G---------~~-~~~ir~lF~~A 319 (703)
.|+.+++.|++|+||||++..+|..+ +..+..+++.-+. + .+ .+ .. ....++.++.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 56678899999999999999998755 5566666543111 1 11 01 01 12235566666
Q ss_pred HhcCCeEEEEcCccc
Q 005304 320 KENAPCIVFVDEIDA 334 (703)
Q Consensus 320 ~~~aP~ILfIDEID~ 334 (703)
+.....+++||=.-.
T Consensus 177 ~~~~~DvVIIDTaG~ 191 (425)
T 2ffh_A 177 RLEARDLILVDTAGR 191 (425)
T ss_dssp HHTTCSEEEEECCCC
T ss_pred HHCCCCEEEEcCCCc
Confidence 545557888875433
No 324
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.05 E-value=0.31 Score=51.73 Aligned_cols=57 Identities=25% Similarity=0.232 Sum_probs=31.2
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhccCC---CCceEEEEcCCCChHHHHHHHHH
Q 005304 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGAR---IPKGVLLVGPPGTGKTLLAKAIA 285 (703)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~~---~p~gvLL~GPpGTGKT~LArAlA 285 (703)
..+|+|+.-.++..+.+.+. .+..+..++..... ..+.+++.+|+|+|||..+-..+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 45788876555555444331 12223333322111 12579999999999998654443
No 325
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.04 E-value=0.12 Score=59.08 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.-+.|.||+|+|||||++.+++..
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 358899999999999999998854
No 326
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.96 E-value=0.057 Score=56.82 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
+...-+.|+||+|+|||||++.|++..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 334468999999999999999999876
No 327
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.95 E-value=0.23 Score=57.94 Aligned_cols=33 Identities=33% Similarity=0.417 Sum_probs=22.8
Q ss_pred CceEEEEcCCCChHHHHHH-HHHHh---cCCCEEEee
Q 005304 264 PKGVLLVGPPGTGKTLLAK-AIAGE---AGVPFFSIS 296 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LAr-AlA~e---~~~pfi~is 296 (703)
.+.++++||+|+|||+.+- ++... .+...+++.
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~ 75 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIV 75 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEEC
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 5689999999999998873 33221 245555554
No 328
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.85 E-value=0.094 Score=56.29 Aligned_cols=69 Identities=22% Similarity=0.341 Sum_probs=43.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCEEEeech-hHH--------------HHHhhh-hhhHHHHHHHHHHhcCCeE
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGS-EFV--------------EMFVGV-GASRVRDLFKKAKENAPCI 326 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~s-e~~--------------~~~~G~-~~~~ir~lF~~A~~~aP~I 326 (703)
..++|.||+|+||||+++++++... .-.+.+... ++. +...+. ....+++.+..+....|..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~ 255 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTR 255 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCE
Confidence 3699999999999999999998653 223333321 110 000010 1223566777777778999
Q ss_pred EEEcCcc
Q 005304 327 VFVDEID 333 (703)
Q Consensus 327 LfIDEID 333 (703)
++++|+.
T Consensus 256 ~l~~e~r 262 (361)
T 2gza_A 256 ILLAELR 262 (361)
T ss_dssp EEESCCC
T ss_pred EEEcCch
Confidence 9999974
No 329
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.83 E-value=0.09 Score=52.63 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=25.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCEEEe
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSI 295 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~--~pfi~i 295 (703)
.-+.|.||||+||||+++.++..++ .+++..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 4588899999999999999999875 566544
No 330
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.80 E-value=0.16 Score=57.76 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=31.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC----CCEEEeechhHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAG----VPFFSISGSEFVE 302 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~----~pfi~is~se~~~ 302 (703)
+..+.|.|++|+||||++++||+.++ ..+..+++..+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 34688999999999999999999874 4566677766644
No 331
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.80 E-value=0.2 Score=52.98 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=29.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC-----CCEEEeechhH
Q 005304 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSISGSEF 300 (703)
Q Consensus 262 ~~p~gvLL~GPpGTGKT~LArAlA~e~~-----~pfi~is~se~ 300 (703)
..|.-+.|.||+|+||||+++.++...+ ..+..++...|
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 3455688999999999999999998764 23555555443
No 332
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=92.79 E-value=0.37 Score=46.21 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=15.3
Q ss_pred ceEEEEcCCCChHHHHHH
Q 005304 265 KGVLLVGPPGTGKTLLAK 282 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LAr 282 (703)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 479999999999997544
No 333
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=92.79 E-value=0.22 Score=57.92 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=23.5
Q ss_pred CceEEEEcCCCChHHHHHHHHH-H---hcCCCEEEeec
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIA-G---EAGVPFFSISG 297 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA-~---e~~~pfi~is~ 297 (703)
.+.++++||+|+|||+.+-..+ . ..+...+++..
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P 83 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTP 83 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECS
T ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 5689999999999999984332 2 12455555543
No 334
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.79 E-value=0.082 Score=58.84 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-++|+||+|+|||+|++.++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 48999999999999999887653
No 335
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.74 E-value=0.071 Score=51.71 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=23.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~pfi 293 (703)
.+|+||.|++|+|||++|.++... |..++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 359999999999999999999874 44333
No 336
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.62 E-value=0.12 Score=55.57 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
...+.-+.|.||+|+||||+++.+|+..
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3456679999999999999999999865
No 337
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=92.58 E-value=0.26 Score=50.57 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=25.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEeec
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (703)
+.+++.+|+|+|||..+-..+-+.+...+.+..
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P 64 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTP 64 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeC
Confidence 369999999999999877766666666666654
No 338
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=92.53 E-value=0.65 Score=48.84 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=17.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAG 286 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~ 286 (703)
+.+++.+|+|+|||..+-..+-
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999987644433
No 339
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.47 E-value=0.24 Score=56.94 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||.|+|||||.+.+++..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58899999999999999999854
No 340
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.46 E-value=0.11 Score=49.08 Aligned_cols=25 Identities=24% Similarity=0.565 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
...|++.|++|+|||+|..++.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999998754
No 341
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.42 E-value=0.13 Score=51.59 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=36.8
Q ss_pred eEEEEcCCCChHHH-HHHHH--HHhcCCCEEEeechh-H------HHHHhhhh-----hhHHHHHHHHHHhcCCeEEEEc
Q 005304 266 GVLLVGPPGTGKTL-LAKAI--AGEAGVPFFSISGSE-F------VEMFVGVG-----ASRVRDLFKKAKENAPCIVFVD 330 (703)
Q Consensus 266 gvLL~GPpGTGKT~-LArAl--A~e~~~pfi~is~se-~------~~~~~G~~-----~~~ir~lF~~A~~~aP~ILfID 330 (703)
-.+++||.|+|||+ |.+.+ +...+..++.+.... - +....|.. .....++++.. .....+|+||
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i-~~~~dvV~ID 108 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHD-LTNVDVIGID 108 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSC-CTTCSEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHH-hcCCCEEEEe
Confidence 36789999999999 55554 234466665554321 0 00001110 01112333322 2346799999
Q ss_pred Ccccc
Q 005304 331 EIDAV 335 (703)
Q Consensus 331 EID~L 335 (703)
|+..+
T Consensus 109 EaQFf 113 (219)
T 3e2i_A 109 EVQFF 113 (219)
T ss_dssp CGGGS
T ss_pred chhcC
Confidence 99998
No 342
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=92.41 E-value=0.34 Score=51.93 Aligned_cols=33 Identities=36% Similarity=0.487 Sum_probs=25.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCCEEEeech
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s 298 (703)
++++..|+|+|||..+-+++... +.+++.+...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 69999999999999988876554 5666666553
No 343
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.41 E-value=0.31 Score=55.84 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.-+.|.||+|+|||||++.+++..
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 458999999999999999998854
No 344
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.40 E-value=0.31 Score=59.35 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.2
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 005304 265 KGVLLVGPPGTGKTLLAKAIA 285 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA 285 (703)
.-++|+||.|+||||+.|.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 569999999999999999993
No 345
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=92.37 E-value=0.28 Score=47.81 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=15.3
Q ss_pred ceEEEEcCCCChHHHHHH
Q 005304 265 KGVLLVGPPGTGKTLLAK 282 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LAr 282 (703)
+.+++.+|+|+|||..+-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 479999999999998643
No 346
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.30 E-value=0.29 Score=55.72 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.-+.|.||+|+|||||++.+++..
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 358899999999999999998854
No 347
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.29 E-value=0.15 Score=50.79 Aligned_cols=50 Identities=18% Similarity=0.245 Sum_probs=34.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEeechhHHHHHhhhhhhHHHHHHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKK 318 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~se~~~~~~G~~~~~ir~lF~~ 318 (703)
.|-|+|..|||||++++.++. .|+|++ ++..+.......+...+..+++.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vi--daD~ia~~l~~~~~~~~~~i~~~ 60 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLV--DTDLIAHRITAPAGLAMPAIEQT 60 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEE--EHHHHHHHHTSTTCTTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEE--ECcHHHHHHhcCCcHHHHHHHHH
Confidence 588999999999999999997 888876 45555444333333333444433
No 348
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.05 E-value=0.26 Score=54.41 Aligned_cols=23 Identities=39% Similarity=0.356 Sum_probs=19.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e 287 (703)
+-.++.|+||||||++.+.++..
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Confidence 45789999999999999888754
No 349
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.05 E-value=0.091 Score=52.51 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=23.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAG 289 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~ 289 (703)
|+-|.|.|++|+||||+++.++..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 44689999999999999999999983
No 350
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.05 E-value=0.13 Score=64.26 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.-+.|+||+|+|||||++.+.+..
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cEEEEEecCCCcHHHHHHHhcccc
Confidence 458899999999999999998865
No 351
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.01 E-value=0.08 Score=55.38 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAG 289 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~ 289 (703)
+.-+.|.||+|+||||+++.+++..+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999999765
No 352
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.98 E-value=0.37 Score=48.79 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
..|++.|.+|+|||+|..++.+..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999998743
No 353
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.97 E-value=0.34 Score=54.31 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=15.1
Q ss_pred CceEEEEcCCCChHHHH
Q 005304 264 PKGVLLVGPPGTGKTLL 280 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~L 280 (703)
.+.+++.+|+|+|||..
T Consensus 111 ~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SEEEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCccHH
Confidence 46899999999999975
No 354
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=91.88 E-value=0.23 Score=56.31 Aligned_cols=44 Identities=23% Similarity=0.175 Sum_probs=30.2
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHh
Q 005304 234 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 234 ~G~de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e 287 (703)
.-.+.+.+.+..+++.+... .+.+++++|+|+|||..+-.++..
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~----------~~~~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQG----------KKRSLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTT----------CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhcC----------CCceEEEecCCCChHHHHHHHHHH
Confidence 34455666666666655432 236899999999999998777654
No 355
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.84 E-value=0.049 Score=55.33 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=25.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-CCCEE
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA-GVPFF 293 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~-~~pfi 293 (703)
+.-|.|.|++|+||||+++.|+..+ +.+++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 4468999999999999999999998 54443
No 356
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.79 E-value=0.095 Score=55.20 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.+.-+.|.||+|+|||||++.|++..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 34458899999999999999999865
No 357
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.68 E-value=0.35 Score=54.82 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=31.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeechhHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~se~~~ 302 (703)
+.-|+|+|++|+||||+|+.++..+ |.++..++...+..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~ 413 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRT 413 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhh
Confidence 4568999999999999999999865 56788888766544
No 358
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=91.62 E-value=0.79 Score=54.20 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeec
Q 005304 238 EAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 297 (703)
Q Consensus 238 e~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~ 297 (703)
.+++.+.++...+.. ..|..+|+.||+|+|||..+-..+-.. +...+.+..
T Consensus 372 ~Q~~ai~~I~~~l~~---------~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaP 425 (780)
T 1gm5_A 372 AQKRAHQEIRNDMIS---------EKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP 425 (780)
T ss_dssp HHHHHHHHHHHHHHS---------SSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred HHHHHHHHHHhhccc---------cCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 344455555554433 234579999999999998876554332 666666654
No 359
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=91.60 E-value=0.76 Score=48.88 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=31.5
Q ss_pred CccccccccchHHHHHHHHHHHHhcCchhhhhccC---CCCceEEEEcCCCChHHHHHHHH
Q 005304 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLAKAI 284 (703)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~---~~p~gvLL~GPpGTGKT~LArAl 284 (703)
..+|+++.=.+...+.+.+. .+..+..++.... ...+.+++.+|+|+|||..+-..
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHH
Confidence 44788875445555444321 1233333332211 12357999999999999765543
No 360
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.58 E-value=0.27 Score=46.11 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-|++.|++|+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 59999999999999999887654
No 361
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.54 E-value=0.098 Score=47.97 Aligned_cols=21 Identities=52% Similarity=0.947 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAG 286 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~ 286 (703)
-|++.|++|+|||+|.+++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999964
No 362
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=91.52 E-value=0.35 Score=54.76 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=30.8
Q ss_pred CCCccccccccchHHHHHHHHHHHHh--cCchhhhhccCC-----CCceEEEEcCCCChHHHHH
Q 005304 225 NTGVTFDDVAGVDEAKQDFMEVVEFL--KKPERFTAIGAR-----IPKGVLLVGPPGTGKTLLA 281 (703)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l--~~p~~~~~lg~~-----~p~gvLL~GPpGTGKT~LA 281 (703)
..+++|+++........++.+.+..+ ..+..++...++ ..+.+++.+|+|+|||..+
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHH
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHH
Confidence 34566777653332333444444432 222223322111 3458999999999999853
No 363
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.48 E-value=0.11 Score=49.98 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
..-+.|.|++|+|||++++.++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3468999999999999999998763
No 364
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=91.42 E-value=1.6 Score=48.14 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=24.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc--------CCCEEEeech
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISGS 298 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~--------~~pfi~is~s 298 (703)
.+++.+|+|+|||..+-..+.+. +..++.+...
T Consensus 21 ~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 21 NTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 69999999999998876665433 5556666543
No 365
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=91.40 E-value=0.25 Score=49.35 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.0
Q ss_pred ceEEEEcCCCChHHHHHH
Q 005304 265 KGVLLVGPPGTGKTLLAK 282 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LAr 282 (703)
+.+++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 369999999999997543
No 366
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.38 E-value=0.076 Score=53.48 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~ 289 (703)
-+.|.||+|+|||||.+++++-..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 588999999999999999997653
No 367
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=91.37 E-value=1.1 Score=49.56 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=23.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc--------CCCEEEeec
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISG 297 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~--------~~pfi~is~ 297 (703)
.+++.+|+|+|||..+-..+.+. +..++.+..
T Consensus 24 ~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 63 (556)
T 4a2p_A 24 NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 63 (556)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeC
Confidence 69999999999998876555433 555665554
No 368
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=91.36 E-value=0.98 Score=47.84 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=15.8
Q ss_pred ceEEEEcCCCChHHHHHHH
Q 005304 265 KGVLLVGPPGTGKTLLAKA 283 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArA 283 (703)
+.+++.+|+|+|||+.+-.
T Consensus 78 ~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCEEECCCSCSSSHHHHHH
T ss_pred CCEEEECCCCCcccHHHHH
Confidence 4699999999999987533
No 369
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=91.33 E-value=0.46 Score=49.85 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=17.2
Q ss_pred CceEEEEcCCCChHHHHHHHH
Q 005304 264 PKGVLLVGPPGTGKTLLAKAI 284 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAl 284 (703)
++.+++.+|+|+|||..+-..
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 368999999999999865443
No 370
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.26 E-value=0.12 Score=54.34 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 005304 263 IPKGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 263 ~p~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.+.-+.|.||+|+||||+++.+|+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35578999999999999999999865
No 371
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.25 E-value=0.2 Score=56.82 Aligned_cols=103 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred EEEEcCCCChHHHHHHHHHH--------------------hcCCCEEEeechhHHHHHhhh-------------------
Q 005304 267 VLLVGPPGTGKTLLAKAIAG--------------------EAGVPFFSISGSEFVEMFVGV------------------- 307 (703)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~--------------------e~~~pfi~is~se~~~~~~G~------------------- 307 (703)
+.|.||.|+|||||++++++ +.-.+.+..+..+........
T Consensus 297 ~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~ 376 (538)
T 3ozx_A 297 IGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH 376 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCH
Q ss_pred -----------hhhHHHHHHHHHHhcCCeEEEEcCcccccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 005304 308 -----------GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (703)
Q Consensus 308 -----------~~~~ir~lF~~A~~~aP~ILfIDEID~L~~~r~~~~~~~~~e~~~~l~~LL~~ld~~~~~~~ViVIaaT 376 (703)
+-.+-|-.+..|-...|.||++||--+-. ......+++..+..+....+..||..|
T Consensus 377 ~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gL-------------D~~~~~~i~~~l~~l~~~~g~tvi~vs 443 (538)
T 3ozx_A 377 RLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYL-------------DVEERYIVAKAIKRVTRERKAVTFIID 443 (538)
T ss_dssp GCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTC-------------CHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCC-------------CHHHHHHHHHHHHHHHHhCCCEEEEEe
Q ss_pred CCcccc
Q 005304 377 NRADIL 382 (703)
Q Consensus 377 N~p~~L 382 (703)
+..+.+
T Consensus 444 Hdl~~~ 449 (538)
T 3ozx_A 444 HDLSIH 449 (538)
T ss_dssp SCHHHH
T ss_pred CCHHHH
No 372
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.21 E-value=0.08 Score=52.42 Aligned_cols=22 Identities=50% Similarity=0.596 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
-+.|.||+|+|||||++++++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999874
No 373
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.18 E-value=0.093 Score=53.13 Aligned_cols=24 Identities=38% Similarity=0.693 Sum_probs=21.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.-+.|.||+|+|||||.+++++-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999864
No 374
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.18 E-value=0.3 Score=48.43 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-|+|.|++|+|||+|..++.+..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 59999999999999999998743
No 375
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.06 E-value=0.073 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||+|+|||||.+++++-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
No 376
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.91 E-value=0.66 Score=46.25 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=25.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc--CCCEEEee
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA--GVPFFSIS 296 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~--~~pfi~is 296 (703)
+.-+++.|.+|+|||+++..+|..+ +..+..++
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 3468889999999999999998654 55565555
No 377
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.91 E-value=0.14 Score=48.52 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~ 289 (703)
-.+|+||.|+|||++++||+.-++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 468999999999999999987664
No 378
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.90 E-value=0.14 Score=57.71 Aligned_cols=26 Identities=12% Similarity=0.010 Sum_probs=23.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGV 290 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~ 290 (703)
..|+|.|.+|+||||++++||..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999874
No 379
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.83 E-value=0.22 Score=47.82 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=25.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCEEEee
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSIS 296 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is 296 (703)
+-+.|.|++|+|||+++..++..+ +..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 358899999999999999998764 45555554
No 380
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.64 E-value=0.23 Score=49.27 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=25.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCEEEee
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSIS 296 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is 296 (703)
+-|.|.|++|+||||+++.++..+ +.+++...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 357889999999999999998866 56665543
No 381
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.62 E-value=0.098 Score=53.61 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||+|+|||||.+++++-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998865
No 382
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.61 E-value=0.096 Score=52.94 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.-+.|.||+|+|||||.+++++-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998764
No 383
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=90.57 E-value=1.6 Score=53.66 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=23.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCEEEeec
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 297 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~ 297 (703)
+.+|++||+|+|||+.+-..+... +...+++..
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 379999999999998875554433 555565554
No 384
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.46 E-value=0.1 Score=51.91 Aligned_cols=23 Identities=43% Similarity=0.495 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||.|+|||||.+++++-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998854
No 385
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.45 E-value=0.14 Score=49.16 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.|++|+|||+|.+.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998853
No 386
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.44 E-value=0.63 Score=49.31 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||||+|||||.+++++..
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 58899999999999999998754
No 387
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.39 E-value=0.22 Score=48.41 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
..+++.|++|+|||+|+..++...
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 369999999999999999998875
No 388
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.34 E-value=0.13 Score=49.12 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.|++|+|||+|.+.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998854
No 389
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.33 E-value=0.1 Score=53.25 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||+|+|||||.+++++-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998865
No 390
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.30 E-value=0.43 Score=59.74 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
-+-|+||+|+|||||++.+.+-
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 4889999999999999999874
No 391
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.27 E-value=0.11 Score=53.15 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.-+.|.||+|+|||||.+++++-.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 358899999999999999998865
No 392
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.22 E-value=0.12 Score=52.46 Aligned_cols=22 Identities=45% Similarity=0.773 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
-+.|.||+|+|||||.+.+++-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999985
No 393
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.20 E-value=0.13 Score=52.81 Aligned_cols=22 Identities=36% Similarity=0.709 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
-+.|.||.|+|||||.+.+++-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999986
No 394
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.19 E-value=0.1 Score=52.23 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.-+.|.||.|+|||||.+++++..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999864
No 395
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=90.17 E-value=0.81 Score=49.96 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=22.0
Q ss_pred ceEEEEcCCCChHHHHH-HHHH---HhcCCCEEEeec
Q 005304 265 KGVLLVGPPGTGKTLLA-KAIA---GEAGVPFFSISG 297 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LA-rAlA---~e~~~pfi~is~ 297 (703)
+.+|+.||+|+|||..+ .++. ...+...+.+..
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~P 39 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAP 39 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 47999999999999875 4333 233445555543
No 396
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.16 E-value=0.84 Score=43.96 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
.|+|.|++|+|||+|.+++...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999864
No 397
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.15 E-value=0.78 Score=46.00 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.5
Q ss_pred ceEEEEcCCCChHHHHHH
Q 005304 265 KGVLLVGPPGTGKTLLAK 282 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LAr 282 (703)
+.+++.+|+|+|||..+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 579999999999998643
No 398
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.14 E-value=0.15 Score=54.39 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=24.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCC
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVP 291 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~~~p 291 (703)
..-+.|.||+|+|||||++.+++.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3468999999999999999999987543
No 399
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.13 E-value=0.11 Score=53.39 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~ 289 (703)
-+.|.||+|+|||||++.+++-..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 588999999999999999998653
No 400
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.12 E-value=0.19 Score=50.50 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=22.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc-------CCCEEEee
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSIS 296 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~-------~~pfi~is 296 (703)
-|.|.|++|+||||+++.++..+ +.+++...
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 47889999999999999998876 66665543
No 401
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.08 E-value=0.12 Score=53.20 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||+|+|||||.+++++-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 48899999999999999998865
No 402
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.07 E-value=0.11 Score=53.66 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||+|+|||||++++++-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48899999999999999998854
No 403
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.04 E-value=0.11 Score=52.78 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||+|+|||||.+.+++-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998865
No 404
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=90.03 E-value=0.83 Score=48.00 Aligned_cols=54 Identities=20% Similarity=0.159 Sum_probs=30.3
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccC---CCCceEEEEcCCCChHHHHH
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLA 281 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~---~~p~gvLL~GPpGTGKT~LA 281 (703)
...+|+++.=.+...+.+... .+..+..++.... ...+.+++.+|+|+|||..+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHH
Confidence 345788875444444444331 1223333332211 11357999999999999874
No 405
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.00 E-value=0.11 Score=52.43 Aligned_cols=23 Identities=48% Similarity=0.569 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||.|+|||||.+.+++-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999865
No 406
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.94 E-value=0.77 Score=43.34 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-|+|.|++|+|||+|.+.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998754
No 407
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.93 E-value=0.57 Score=49.60 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
..-+.|.|+||+|||+++++++...
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999998754
No 408
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=89.87 E-value=0.45 Score=48.14 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.3
Q ss_pred ceEEEEcCCCChHHHHHH
Q 005304 265 KGVLLVGPPGTGKTLLAK 282 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LAr 282 (703)
+.+++.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 369999999999998653
No 409
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.85 E-value=0.15 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.+.|.||+|+|||||.+.+++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999865
No 410
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.83 E-value=0.14 Score=55.01 Aligned_cols=23 Identities=48% Similarity=0.700 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||+|+|||||.+++|+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999844
No 411
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.70 E-value=0.13 Score=52.76 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||.|+|||||.+.+++-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999998854
No 412
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.69 E-value=0.18 Score=45.79 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.+++.|++|+|||+|++++.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
No 413
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.66 E-value=0.15 Score=54.86 Aligned_cols=23 Identities=43% Similarity=0.524 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||+|+|||||.+++|+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999999854
No 414
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.65 E-value=0.13 Score=52.54 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||.|+|||||.+++++-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998854
No 415
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.64 E-value=0.15 Score=54.93 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||+|+|||||.|++|+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999844
No 416
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.59 E-value=0.12 Score=52.55 Aligned_cols=24 Identities=42% Similarity=0.634 Sum_probs=21.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~ 289 (703)
-+.|.||.|+|||||.+.+++-..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 488999999999999999998653
No 417
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.54 E-value=0.13 Score=55.04 Aligned_cols=23 Identities=43% Similarity=0.716 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||+|+|||||.|.+|+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 48899999999999999999854
No 418
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.45 E-value=0.15 Score=54.99 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||+|+|||||.|++|+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 48899999999999999999843
No 419
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.44 E-value=0.19 Score=45.96 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
.|++.|++|+|||+|.+++.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999874
No 420
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.36 E-value=0.13 Score=53.28 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||.|+|||||.+.+++..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999865
No 421
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.35 E-value=0.52 Score=56.93 Aligned_cols=21 Identities=43% Similarity=0.650 Sum_probs=19.5
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAG 286 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~ 286 (703)
-+.|.||.|+|||||.+.+++
T Consensus 463 ~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999984
No 422
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.30 E-value=0.13 Score=49.27 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.+.|.|++|+|||||++.+++..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998875
No 423
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.27 E-value=0.13 Score=52.39 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||+|+|||||.+.+++-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999864
No 424
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.20 E-value=0.24 Score=47.97 Aligned_cols=24 Identities=25% Similarity=0.591 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
..|+|.|++|+|||+|+.++.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999998754
No 425
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.11 E-value=0.18 Score=46.84 Aligned_cols=22 Identities=36% Similarity=0.745 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
-+.|.|++|+|||+|.+++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999864
No 426
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.05 E-value=0.15 Score=48.28 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=19.5
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAG 286 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~ 286 (703)
-|+|.|++|+|||+|.+.+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 427
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.05 E-value=0.21 Score=45.29 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999764
No 428
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.04 E-value=0.2 Score=45.28 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.|++.|++|+|||+|++++.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 429
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=89.02 E-value=0.67 Score=49.22 Aligned_cols=26 Identities=27% Similarity=0.618 Sum_probs=22.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHh
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e 287 (703)
...| -|.+.|++|+|||+|..++.+.
T Consensus 32 ~~lp-~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 32 DSLP-AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCCC-EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccCC-EEEEECCCCCcHHHHHHHHhCC
Confidence 3455 5899999999999999999873
No 430
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.90 E-value=0.16 Score=52.21 Aligned_cols=23 Identities=48% Similarity=0.836 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||+|+|||||.+.+++..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999875
No 431
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=88.86 E-value=1.4 Score=46.68 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=28.9
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhcc---CCCCceEEEEcCCCChHHHHH
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIG---ARIPKGVLLVGPPGTGKTLLA 281 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg---~~~p~gvLL~GPpGTGKT~LA 281 (703)
+..+|+++.=.+...+.+... .+..|..++... +...+.+++.+|+|+|||+.+
T Consensus 13 ~~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 13 HIESFSDVEMGEIIMGNIELT--RYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp CCSSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred ccCCHhhCCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHH
Confidence 344688874334444333321 123333333221 112357999999999999743
No 432
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=88.80 E-value=0.64 Score=43.85 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
.|++.|++|+|||+|.+++.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 433
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.79 E-value=0.38 Score=47.89 Aligned_cols=29 Identities=24% Similarity=0.157 Sum_probs=25.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi 293 (703)
+-|.|.|++|+||||+++.++..++.+..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 45888999999999999999999876543
No 434
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.75 E-value=0.23 Score=45.09 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
.|++.|++|+|||+|.+++.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
No 435
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.73 E-value=0.23 Score=45.28 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.|++.|++|+|||+|.+++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999997643
No 436
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=88.72 E-value=0.83 Score=45.17 Aligned_cols=17 Identities=41% Similarity=0.679 Sum_probs=14.8
Q ss_pred ceEEEEcCCCChHHHHH
Q 005304 265 KGVLLVGPPGTGKTLLA 281 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LA 281 (703)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999864
No 437
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=88.65 E-value=1.4 Score=47.80 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=29.0
Q ss_pred CCccccccccchHHHHHHHHHHHHhcCchhhhhccC---CCCceEEEEcCCCChHHHH
Q 005304 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLL 280 (703)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~lg~---~~p~gvLL~GPpGTGKT~L 280 (703)
+-.+|+++.-.+...+.+.+. .+..|..++...+ ...+.+++.+|+|+|||..
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKS--GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CcCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 345788864334444433221 1233333332211 1235799999999999984
No 438
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.60 E-value=0.2 Score=46.18 Aligned_cols=22 Identities=55% Similarity=0.860 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
-|++.|++|+|||+|.+++.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5999999999999999999753
No 439
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.59 E-value=0.14 Score=54.98 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||+|+|||||.+.+|+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999843
No 440
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.58 E-value=0.45 Score=46.32 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.-++|.|.+|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 358889999999999999998765
No 441
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.55 E-value=0.24 Score=45.27 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.|++.|++|+|||+|.+++.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998754
No 442
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.36 E-value=0.22 Score=46.68 Aligned_cols=22 Identities=36% Similarity=0.745 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
-++|.|++|+|||+|.+++++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999874
No 443
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.34 E-value=0.2 Score=54.51 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
-+.|.||+|+|||||.++||+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5889999999999999999974
No 444
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.33 E-value=0.6 Score=43.92 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e 287 (703)
.-|++.|++|+|||+|.+++.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999764
No 445
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=88.30 E-value=0.25 Score=45.64 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
.|++.|++|+|||+|.+++.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999764
No 446
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.29 E-value=0.25 Score=45.22 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
.|++.|++|+|||+|.+++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999865
No 447
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=88.29 E-value=0.24 Score=45.24 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999764
No 448
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=88.21 E-value=0.93 Score=46.96 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.7
Q ss_pred CceEEEEcCCCChHHHHH
Q 005304 264 PKGVLLVGPPGTGKTLLA 281 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LA 281 (703)
++.+++++|+|+|||...
T Consensus 131 ~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCccHHH
Confidence 468999999999999753
No 449
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=88.14 E-value=0.22 Score=57.33 Aligned_cols=33 Identities=36% Similarity=0.512 Sum_probs=24.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCCEEEeech
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s 298 (703)
..++.||||||||+++..++..+ +.+++.+..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 48999999999999887775543 4566655544
No 450
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.14 E-value=0.26 Score=45.57 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
.|++.|++|+|||+|.+.+.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999764
No 451
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.13 E-value=0.24 Score=45.29 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
.|++.|++|+|||+|.+++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 452
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=88.06 E-value=0.27 Score=44.80 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
.|++.|++|+|||+|.+++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
No 453
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=87.97 E-value=0.71 Score=49.12 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
-+.|.|+||+|||||..++++.
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 454
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.97 E-value=0.28 Score=44.68 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
.|++.|++|+|||+|.+++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 455
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.95 E-value=0.22 Score=47.11 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e 287 (703)
..|++.|++|+|||+|..++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999764
No 456
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.91 E-value=0.24 Score=45.47 Aligned_cols=21 Identities=48% Similarity=0.787 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAG 286 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~ 286 (703)
-|++.|++|+|||+|.+++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999999964
No 457
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.90 E-value=0.27 Score=45.44 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
-|++.|++|+|||+|.+++.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5999999999999999999753
No 458
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=87.88 E-value=0.28 Score=45.86 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e 287 (703)
..|+|.|++|+|||+|.+++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999863
No 459
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.88 E-value=0.19 Score=52.30 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||.|+|||||.+++++-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48899999999999999998854
No 460
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.87 E-value=0.31 Score=48.40 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=23.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (703)
.-+.|.|+.|+||||+++.+++. +..+..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~ 49 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY-KNDICL 49 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG-TTTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhc-cCCeEE
Confidence 35789999999999999999987 444443
No 461
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.87 E-value=0.29 Score=49.47 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=25.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCC-EEEe
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVP-FFSI 295 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~---~~p-fi~i 295 (703)
++-|.|.|++|+||||+++.++..+ +.+ ++..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 4468899999999999999998765 556 4433
No 462
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=87.73 E-value=2.9 Score=49.20 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=24.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc--------CCCEEEeec
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISG 297 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~--------~~pfi~is~ 297 (703)
+.+++.+|+|+|||..+-..+... +.+++.+..
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~P 304 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 479999999999998876665443 556666654
No 463
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=87.71 E-value=0.3 Score=44.55 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
.|++.|++|+|||+|.+++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999764
No 464
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.71 E-value=0.33 Score=44.86 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e 287 (703)
.-|++.|++|+|||+|.+++.+.
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999763
No 465
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=87.59 E-value=1.6 Score=54.57 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e 287 (703)
.-+-|+||+|+|||+|++.+++-
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999874
No 466
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=87.53 E-value=0.38 Score=44.03 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e 287 (703)
..|++.|++|+|||+|..++...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999763
No 467
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=87.50 E-value=0.43 Score=59.59 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.-+.|.||+|+|||||++.+++..
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999998754
No 468
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=87.47 E-value=1.6 Score=47.75 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.9
Q ss_pred CceEEEEcCCCChHHHHH
Q 005304 264 PKGVLLVGPPGTGKTLLA 281 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LA 281 (703)
++.+++.+|+|+|||..+
T Consensus 131 ~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCEEEEECCSSSSHHHHH
T ss_pred CCcEEEEcCCCCchhHHH
Confidence 468999999999999774
No 469
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=87.46 E-value=0.29 Score=45.13 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
.|++.|++|+|||+|.+++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
No 470
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.42 E-value=0.34 Score=46.05 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e 287 (703)
..|++.|++|+|||+|.+.+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999874
No 471
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=87.41 E-value=2.1 Score=47.13 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=23.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCCEEEeec
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISG 297 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~ 297 (703)
.++|+||+|+|||..+-.++... +.+++.+..
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P 165 (510)
T 2oca_A 130 RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVP 165 (510)
T ss_dssp EEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEES
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 68999999999999987666542 335665554
No 472
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.40 E-value=0.19 Score=52.79 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
..-+.|.||+|+|||||++.+++..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 3458999999999999999998754
No 473
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=87.38 E-value=0.35 Score=51.02 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=23.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi 293 (703)
+|++|.|++|+|||++|.++... |..++
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 48999999999999999999775 44443
No 474
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=87.37 E-value=0.31 Score=44.89 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.|++.|++|+|||+|.+++.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 69999999999999999998643
No 475
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=87.36 E-value=0.56 Score=46.31 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=30.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCC-CEEEeechhHH
Q 005304 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-PFFSISGSEFV 301 (703)
Q Consensus 261 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~~-pfi~is~se~~ 301 (703)
..+++-|+|+|.||+||+++|+.+....+. .+..++.++-+
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~i 49 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPL 49 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHH
Confidence 346678999999999999999999887753 24445665543
No 476
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=87.36 E-value=4.1 Score=50.25 Aligned_cols=52 Identities=21% Similarity=0.200 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHhcCchhhhhccCCCCceEEEEcCCCChHHHHHHHHHH---hcCCCEEEeec
Q 005304 237 DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISG 297 (703)
Q Consensus 237 de~k~~L~e~v~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LArAlA~---e~~~pfi~is~ 297 (703)
+.+++.+..++..+... .|..+|++||+|+|||..+-..|- ..+..++.+..
T Consensus 606 ~~Q~~ai~~il~~~~~g---------~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvP 660 (1151)
T 2eyq_A 606 PDQAQAINAVLSDMCQP---------LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 660 (1151)
T ss_dssp HHHHHHHHHHHHHHHSS---------SCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECS
T ss_pred HHHHHHHHHHHHHHhcC---------CcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEec
Confidence 44555555555544332 245799999999999987653332 33555555543
No 477
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=87.34 E-value=0.31 Score=45.76 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e 287 (703)
--|++.|++|+|||+|..++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999875
No 478
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=87.32 E-value=1 Score=49.58 Aligned_cols=21 Identities=43% Similarity=0.675 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAG 286 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~ 286 (703)
-|+|.|.||+|||+|..++.+
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEE
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 599999999999999999965
No 479
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=87.29 E-value=0.53 Score=54.52 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=16.9
Q ss_pred eEEEEcCCCChHHHHHHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAI 284 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAl 284 (703)
-+.|.||+|+|||||++.+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEEEECSTTSSHHHHHTTT
T ss_pred EEEEEeeCCCCHHHHHHHH
Confidence 4889999999999999764
No 480
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.29 E-value=0.27 Score=46.11 Aligned_cols=22 Identities=41% Similarity=0.738 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
-+.|.|+||+|||+|.+++++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 481
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=87.27 E-value=1.6 Score=53.01 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=23.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh---cCCCEEEeec
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISG 297 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~ 297 (703)
++++.+|+|+|||..+...... .+...+++..
T Consensus 103 ~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~P 137 (1010)
T 2xgj_A 103 SVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 137 (1010)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEECCCCCChHHHHHHHHHHHhccCCeEEEECC
Confidence 6999999999999987543322 3566666665
No 482
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.27 E-value=0.36 Score=48.40 Aligned_cols=31 Identities=26% Similarity=0.245 Sum_probs=24.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc----CCCEEE
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFS 294 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e~----~~pfi~ 294 (703)
++-|.|.|++|+||||+++.++..+ +.+++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 4458888999999999999998865 446555
No 483
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=87.20 E-value=0.33 Score=51.18 Aligned_cols=28 Identities=36% Similarity=0.484 Sum_probs=22.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e~~~pfi 293 (703)
+|+||.|++|+|||++|.++.. .|..++
T Consensus 148 ~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 4899999999999999998865 455544
No 484
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.19 E-value=0.32 Score=45.75 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
.|++.|++|+|||+|+.+++...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998753
No 485
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=87.15 E-value=1.9 Score=43.05 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e 287 (703)
..|+|.|++|+|||+|..++.+.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999764
No 486
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=87.14 E-value=0.32 Score=45.32 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-|++.|++|+|||+|..++.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 59999999999999999998643
No 487
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=87.12 E-value=0.33 Score=45.10 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
.|++.|++|+|||+|.+++...
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5999999999999999999864
No 488
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.11 E-value=0.31 Score=45.02 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
.|++.|++|+|||+|.+++.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999875
No 489
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=87.04 E-value=0.38 Score=52.66 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
-+.|.||+|+|||||.+++++.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999984
No 490
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=87.02 E-value=0.31 Score=45.80 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
-|++.|++|+|||+|++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 491
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=86.97 E-value=0.34 Score=45.82 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
.|++.|++|+|||+|.+++.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999874
No 492
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=86.90 E-value=0.34 Score=44.94 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
.|++.|++|+|||+|.+++.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999764
No 493
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=86.88 E-value=0.37 Score=45.99 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 005304 264 PKGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LArAlA~e 287 (703)
...|++.|++|+|||+|.+++.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 346999999999999999999764
No 494
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=86.82 E-value=0.33 Score=45.33 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
-|++.|++|+|||+|.+++.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999764
No 495
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.80 E-value=0.57 Score=50.31 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e 287 (703)
.++++.||+|+|||++++.++..
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998754
No 496
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=86.70 E-value=0.32 Score=44.95 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 005304 266 GVLLVGPPGTGKTLLAKAIAG 286 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~ 286 (703)
.|++.|++|+|||+|.+++.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 599999999999999999965
No 497
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=86.69 E-value=0.33 Score=53.94 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (703)
-+.|.||+|+|||||+|.+++-.
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 49999999999999999998864
No 498
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=86.58 E-value=0.17 Score=48.63 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 005304 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 265 ~gvLL~GPpGTGKT~LArAlA~e 287 (703)
.-+.|.|++|+|||+|.+++++.
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998754
No 499
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=86.54 E-value=1.6 Score=46.09 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.9
Q ss_pred CceEEEEcCCCChHHHHH
Q 005304 264 PKGVLLVGPPGTGKTLLA 281 (703)
Q Consensus 264 p~gvLL~GPpGTGKT~LA 281 (703)
++.+++.+|+|+|||..+
T Consensus 64 ~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCchHHHHH
Confidence 468999999999999875
No 500
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=86.46 E-value=0.3 Score=45.73 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005304 266 GVLLVGPPGTGKTLLAKAIAGE 287 (703)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (703)
.|++.|++|+|||+|..++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999764
Done!